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niman

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Everything posted by niman

  1. Descriptions Align Segment-ID Name Score E-Value Identity EPI1131087 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1019730 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019634 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019578 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019434 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019426 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI868847 A/turkey/England/052131/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019674 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019642 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019618 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019602 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019514 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019506 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019474 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019402 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI990766 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI942934 A/turkey/England/003778/2017 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019490 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI909459 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI909451 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019586 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019546 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI961448 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI909427 A/turkey/Rostov/11/2017 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019842 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019834 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019786 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019698 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019594 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019570 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019554 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019538 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019482 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI969253 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI931206 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI860400 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI860235 A/wild duck/Poland/82A/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI863848 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 3 (PA) 3886.5 0.000000e+00 2135/2151 (99%) EPI1122892 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1045608 A/chicken/Rostov/44/2017 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1040236 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019866 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019858 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019778 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019754 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019682 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019418 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019386 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI954555 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI909443 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI881285 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI877540 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI869686 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2136/2152 (99%) EPI863864 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI860392 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI859658 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1122884 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 3 (PA) 3882.8 0.000000e+00 2134/2151 (99%) EPI1122876 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 3 (PA) 3882.8 0.000000e+00 2134/2151 (99%) EPI863833 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 3 (PA) 3882.8 0.000000e+00 2134/2151 (99%) EPI863825 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 3 (PA) 3882.8 0.000000e+00 2134/2151 (99%) EPI942942 A/chicken/Wales/000023/2016 (A/H5N8) segment 3 (PA) 3880.9 0.000000e+00 2134/2151 (99%) EPI1019874 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI1019762 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI1019610 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI1019522 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2135/2152 (99%) EPI1019498 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI1019458 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI1019394 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI1019362 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI967466 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI954873 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI954857 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI954809 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI954779 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI861185 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI863856 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 3 (PA) 3875.4 0.000000e+00 2132/2151 (99%) EPI1045594 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI1019850 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI1019826 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI1019818 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI1019810 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI1019714 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI1019530 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI1019466 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI1019450 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI1019410 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI1019370 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI954755 A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI954659 A/Goose/Hungary/1030/2017 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI954603 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI954579 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI954571 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI909363 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 3 (PA) 3869.9 0.000000e+00 2132/2151 (99%) EPI1019626 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI1007674 A/peacock/Belgium/1017/2017 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI1007666 A/chicken/Belgium/807/2017 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI990782 A/mute swan/Germany-NI/AR1529-L02145/2017 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI967670 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2133/2152 (99%) EPI961466 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI909435 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%)
  2. Descriptions Align Segment-ID Name Score E-Value Identity EPI1131086 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI1131094 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI909458 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%) EPI909450 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 2 (PB1) 4067.4 0.000000e+00 2250/2274 (98%) EPI961447 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 2 (PB1) 4061.9 0.000000e+00 2249/2274 (98%) EPI1117251 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019844 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019836 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019788 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019780 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019724 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019716 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019708 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019692 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019684 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019652 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019628 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019596 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019532 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019460 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019452 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019396 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019388 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019380 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019372 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI1019364 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI956130 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI954581 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI922322 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI860495 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI860390 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4056.4 0.000000e+00 2248/2274 (98%) EPI967462 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 2 (PB1) 4052.7 0.000000e+00 2247/2274 (98%) EPI1044546 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019876 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019868 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019860 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019852 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019828 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019820 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019812 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019804 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019796 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019772 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019756 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019668 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019660 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019612 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019572 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019564 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019540 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019500 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019484 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019468 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019420 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019412 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI969252 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI954781 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI909362 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI885204 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI881281 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI881276 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI860398 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI859659 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 2 (PB1) 4050.8 0.000000e+00 2247/2274 (98%) EPI1019764 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI1019748 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI1019700 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI1019556 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI1019524 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI962063 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI954811 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI954661 A/Goose/Hungary/1030/2017 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI931205 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI909426 A/turkey/Rostov/11/2017 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI859205 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2246/2274 (98%) EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4041.6 0.000000e+00 2245/2274 (98%) EPI1122891 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1122875 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1045607 A/chicken/Rostov/44/2017 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1032482 A/Goose/Hungary/15729/2017 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1019740 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1019732 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1019644 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1019548 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1019516 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1019444 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1007673 A/peacock/Belgium/1017/2017 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1007665 A/chicken/Belgium/807/2017 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI954875 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI954867 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI954859 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI954819 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI954733 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI909466 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI860526 A/goose/Hungary/55128/2016 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI860511 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 2 (PB1) 4039.7 0.000000e+00 2245/2274 (98%) EPI1122883 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 2 (PB1) 4036.0 0.000000e+00 2244/2274 (98%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4036.0 0.000000e+00 2244/2274 (98%) EPI1032550 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 2 (PB1) 4034.2 0.000000e+00 2244/2274 (98%)
  3. Descriptions Align Segment-ID Name Score E-Value Identity EPI1131085 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI1019675 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI1019619 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI1019475 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI1019427 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 1 (PB2) 4156.1 0.000000e+00 2270/2280 (99%) EPI1019731 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI1019547 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI1019515 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI1019507 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI942932 A/turkey/England/003778/2017 (A/H5N8) segment 1 (PB2) 4146.8 0.000000e+00 2268/2280 (99%) EPI868845 A/turkey/England/052131/2016 (A/H5N8) segment 1 (PB2) 4146.8 0.000000e+00 2268/2280 (99%) EPI1019643 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1019635 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1019603 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1019587 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1019491 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1019435 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI990767 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI961446 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI942940 A/chicken/Wales/000023/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI909457 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI909449 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI909433 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1019579 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI1019555 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI954580 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI869684 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI1019403 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%) EPI1019395 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%) EPI954874 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%) EPI954858 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%) EPI1019843 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019835 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019779 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019771 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019747 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019739 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019723 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019707 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019699 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019683 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019667 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019523 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019467 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019459 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019451 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019411 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019387 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019379 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019363 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1007672 A/peacock/Belgium/1017/2017 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1007664 A/chicken/Belgium/807/2017 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI954810 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI954756 A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI881279 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI863846 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI863831 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI863823 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI860233 A/wild duck/Poland/82A/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI988591 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 1 (PB2) 4124.7 0.000000e+00 2264/2280 (99%) EPI863854 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 1 (PB2) 4124.7 0.000000e+00 2264/2280 (99%) EPI1127535 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI1117250 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI1019787 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI1019691 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI1019659 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI1019571 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI1019539 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI1019443 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI1019419 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI1019371 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI969251 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI954660 A/Goose/Hungary/1030/2017 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI909417 A/chicken/Voronezh/20/2017 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI909409 A/chicken/Voronezh/19/2017 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI909401 A/chicken/Voronezh/18/2017 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI909385 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI909377 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI954556 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 1 (PB2) 4119.1 0.000000e+00 2263/2280 (99%) EPI1122890 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019875 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019867 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019859 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019851 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019827 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019819 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019811 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019803 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019755 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019651 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019627 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019563 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI954780 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI954572 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI916719 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI909393 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI895486 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI869942 A/herring gull/Poland/84/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI860399 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI859660 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%)
  4. Descriptions Align Segment-ID Name Score E-Value Identity EPI1131091 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1032553 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI1032527 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI1032519 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI1032511 A/Goose/Hungary/59763/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI1032503 A/Goose/Hungary/17985/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI1032495 A/Goose/Hungary/17580/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI1032487 A/Goose/Hungary/17051/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI1032479 A/Goose/Hungary/15729/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI962050 A/Duck/Hungary/55764/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI962039 A/Duck/Hungary/54738/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI961503 A/turkey/Italy/17VIR1574-1/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI959534 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI959427 A/chicken/Poland/79A/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI956123 A/Goose/Hungary/59712/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI954832 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI954730 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI954722 A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI954714 A/Mute swan/Hungary/2825/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI954682 A/Mute swan/Hungary/1955/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI954650 A/Duck/Hungary/984/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI954634 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI954594 A/turkey/Italy/17VIR1338-3/2017 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI953518 A/mallard/Hungary/57857/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI866980 A/duck/Hungary/60441/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI860521 A/goose/Hungary/55128/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI860516 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI859202 A/mute_swan/Hungary/51049/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 974/983 (99%) EPI1085345 A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 973/982 (99%) EPI969267 A/chicken/Czech Republic/2644-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 973/982 (99%) EPI931199 A/chicken/Czech Republic/1896-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 973/982 (99%) EPI931112 A/mute swan/Czech Republic/879-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 973/982 (99%) EPI930844 A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 973/982 (99%) EPI930839 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1762.8 0.000000e+00 973/982 (99%) EPI1126346 A/mallard/Czech Republic/136-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI1116593 A/mute swan/Czech Republic/54-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI1087641 A/chicken/Czech Republic/988-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI1032471 A/Goose/Hungary/17261/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1002886 A/black swan/Germany-BW/R1364/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI975870 A/white stork/Germany-TH/R1149/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI975869 A/tawny owl/Germany-SN/R1186/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 971/980 (99%) EPI962060 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI961520 A/chicken/Italy/17VIR1751-3/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI961512 A/chicken/Italy/17VIR1684-2/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI959558 A/Rook/Hungary/4975/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI959526 A/Mute swan/Hungary/6092/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI959518 A/Cormorant/Hungary/6102/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI959421 A/domestic goose/Poland/33/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954864 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954840 A/Mallard/Hungary/5821/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954824 A/Chicken/Hungary/1751/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954746 A/Chicken/Hungary/2496/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954738 A/Mute swan/Hungary/3542/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954706 A/Mute swan/Hungary/2508/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954698 A/Mute swan/Hungary/2193/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954626 A/Mute swan/Hungary/119/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954586 A/turkey/Italy/17VIR973-2/2017 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI954534 A/Goose/Hungary/65817/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI869812 A/duck/France/161108h/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI859210 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI1127018 A/mallard/Czech Republic/1226-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1126383 A/mallard/Czech Republic/1219-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1126370 A/mute swan/Czech Republic/987-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1126361 A/mute swan/Czech Republic/1156-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1126360 A/mute swan/Czech Republic/1155-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1126357 A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1126351 A/mute swan/Czech Republic/967-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1126349 A/mute swan/Czech Republic/572-17_3/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1117249 A/mute swan/Czech Republic/964-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI1081897 A/turkey/Czech Republic/38-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI987885 A/chicken/Republic of Macedonia/AR1167-L02131/2017 (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI969264 A/chicken/Czech Republic/2643-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI969261 A/mute swan/Czech Republic/1813-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI961530 A/goose/Czech Republic/821-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI961487 A/mute swan/Czech Republic/581-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI961481 A/mute swan/Czech Republic/499-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI931196 A/chicken/Czech Republic/1863-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI930842 A/Indian Runner Duck/Czech Republic/749-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI919638 A/chicken/Czech Republic/585-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI917482 A/mute swan/Czech Republic/722-17_1/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI916524 A/mallard/Czech Republic/722-17_2/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI916387 A/mute swan/Czech Republic/653-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1757.3 0.000000e+00 972/982 (98%) EPI888279 A/turkey/Czech Republic/38-17_5/2017 (H5N8) (A/H5N8) segment 7 (MP) 1755.4 0.000000e+00 971/982 (98%) EPI1032543 A/Goose/Hungary/64909/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI1032535 A/Goose/Hungary/63743/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI1019529 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI961452 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954816 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954690 A/Turkey/Hungary/2030/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954674 A/Greylag_goose/Hungary/1941/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954666 A/Duck/Hungary/1588/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI954642 A/Goose/Hungary/982/2017 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI909463 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI909455 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI866974 A/chicken/Hungary/59048/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI1126347 A/goose/Czech Republic/197-17/2017 (H5N8) (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI990797 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI990789 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI964920 A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 971/982 (98%) EPI961996 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 7 (MP) 1751.7 0.000000e+00 969/979 (98%)
  5. Descriptions Align Segment-ID Name Score E-Value Identity EPI1131090 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI1131098 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 6 (NA) 2551.3 0.000000e+00 1391/1396 (99%) EPI1129918 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 6 (NA) 2446.1 0.000000e+00 1334/1339 (99%) EPI1129917 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 6 (NA) 2442.4 0.000000e+00 1322/1322 (100%) EPI1122895 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 6 (NA) 2442.4 0.000000e+00 1378/1406 (98%) EPI1122887 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 6 (NA) 2438.7 0.000000e+00 1377/1406 (97%) EPI1122879 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 6 (NA) 2438.7 0.000000e+00 1377/1406 (97%) EPI1119073 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI1127540 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI1011098 A/barnacle goose/Netherlands/2/2014 (A/H3N6) segment 6 (NA) 2381.5 0.000000e+00 1369/1408 (97%) EPI1036189 A/duck/Moscow/4652/2011 (A/H4N6) segment 6 (NA) 2300.2 0.000000e+00 1354/1408 (96%) EPI890326 A/mallard duck/Netherlands/19/2012 (A/H4N6) segment 6 (NA) 2292.8 0.000000e+00 1353/1408 (96%) EPI1036196 A/duck/Moscow/4781/2012 (A/H4N6) segment 6 (NA) 2276.2 0.000000e+00 1350/1408 (95%) EPI891032 A/mallard duck/Netherlands/30/2014 (A/H4N6) segment 6 (NA) 2220.8 0.000000e+00 1341/1409 (95%) EPI823917 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1341/1410 (95%) EPI823909 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1341/1410 (95%) EPI823901 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1341/1410 (95%) EPI823790 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 6 (NA) 2215.3 0.000000e+00 1341/1410 (95%) EPI470232 A/duck/Yunnan/87/2007 (A/H7N6) segment 6 (NA) 2215.3 0.000000e+00 1340/1409 (95%) EPI692466 A/duck/Henan/S1091/2010 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1339/1409 (95%) EPI533781 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1339/1409 (95%) EPI533775 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1339/1409 (95%) EPI485322 A/eurasian wigeon/Mongolia/340V/2009 (A/H4N6) segment 6 (NA) 2209.7 0.000000e+00 1339/1409 (95%) EPI692506 A/duck/Hunan/S1012/2009 (A/H4N6) segment 6 (NA) 2198.6 0.000000e+00 1337/1409 (94%) EPI692346 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 6 (NA) 2193.1 0.000000e+00 1336/1409 (94%) EPI692338 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 6 (NA) 2193.1 0.000000e+00 1336/1409 (94%) EPI414148 A/duck/Jiangsu/4/2010 (A/H3N6) segment 6 (NA) 2193.1 0.000000e+00 1336/1409 (94%) EPI407862 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 6 (NA) 2189.4 0.000000e+00 1335/1409 (94%) EPI372354 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 6 (NA) 2189.4 0.000000e+00 1336/1409 (94%) EPI1014700 A/mallard duck/Netherlands/7/2006 (A/H10N6) segment 6 (NA) 2187.6 0.000000e+00 1335/1409 (94%) EPI395392 A/chicken/India/WB-NIV101006/2009 (A/H4N6) segment 6 (NA) 2187.6 0.000000e+00 1335/1409 (94%) EPI1013418 A/mallard duck/Netherlands/8/2006 (A/H10N6) segment 6 (NA) 2182.0 0.000000e+00 1334/1409 (94%) EPI296530 A/mallard/Netherlands/4/2006 (A/H10N6) segment 6 (NA) 2182.0 0.000000e+00 1334/1409 (94%) EPI243479 A/duck/Vietnam/OIE-2454/2009 (A/H4N6) segment 6 (NA) 2182.0 0.000000e+00 1335/1410 (94%) EPI890683 A/mallard duck/Netherlands/6/2006 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1333/1409 (94%) EPI401303 A/duck/Korea/DY104/2007 (A/H4N6) segment 6 (NA) 2176.5 0.000000e+00 1333/1409 (94%) EPI513237 A/mallard/Sweden/104925/2009 (A/H4N6) segment 6 (NA) 2170.9 0.000000e+00 1333/1410 (94%) EPI168523 A/common pochard/Aktau/1455/2006 (A/H4N6) segment 6 (NA) 2170.9 0.000000e+00 1333/1410 (94%) EPI168522 A/coot/Aktau/1454/2006 (A/H4N6) segment 6 (NA) 2165.4 0.000000e+00 1333/1411 (94%) EPI704432 A/duck/Mongolia/769/2015 (A/H4N6) segment 6 (NA) 2154.3 0.000000e+00 1332/1412 (94%) EPI540366 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 6 (NA) 2154.3 0.000000e+00 1330/1410 (94%) EPI513749 A/mallard/Sweden/79978/2008 (A/H4N6) segment 6 (NA) 2148.8 0.000000e+00 1328/1409 (94%) EPI513568 A/mallard/Sweden/80348/2008 (A/H0) segment 6 (NA) 2148.8 0.000000e+00 1329/1410 (94%) EPI395393 A/chicken/India/WB-NIV101018/2009 (A/H4N6) segment 6 (NA) 2143.2 0.000000e+00 1328/1410 (94%) EPI284397 A/mallard/Czech Republic/12652/2007 (A/H4N6) segment 6 (NA) 2143.2 0.000000e+00 1327/1409 (94%) EPI1013677 A/mallard duck/Netherlands/10/2013 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1327/1410 (94%) EPI1011235 A/mallard duck/Netherlands/22/2011 (A/H4N6) segment 6 (NA) 2137.7 0.000000e+00 1327/1410 (94%) EPI485357 A/ruddy shelduck/Mongolia/592/2010 (A/H8N6) segment 6 (NA) 2137.7 0.000000e+00 1327/1410 (94%) EPI704293 A/duck/Mongolia/127/2015 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1412 (94%) EPI704269 A/duck/Mongolia/101/2015 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1328/1412 (94%) EPI540374 A/duck/Bangladesh/1283/2008 (A/H4N6) segment 6 (NA) 2132.2 0.000000e+00 1327/1411 (94%) EPI889824 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1325/1410 (93%) EPI540358 A/duck/Bangladesh/1766/2010 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1324/1409 (93%) EPI513170 A/mallard/Sweden/105012/2009 (A/H4N6) segment 6 (NA) 2126.6 0.000000e+00 1325/1410 (93%) EPI965451 A/duck/Bangladesh/26974/2015 (A/H3N6) segment 6 (NA) 2121.1 0.000000e+00 1327/1413 (93%) EPI618783 A/mallard/Sweden/93475/2009 (A/H10N6) segment 6 (NA) 2121.1 0.000000e+00 1325/1411 (93%) EPI513546 A/mallard/Sweden/101010/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513461 A/mallard/Sweden/101632/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513454 A/mallard/Sweden/101603/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513433 A/mallard/Sweden/101564/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513431 A/mallard/Sweden/101785/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513415 A/mallard/Sweden/101733/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513408 A/mallard/Sweden/101663/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513394 A/mallard/Sweden/101654/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513358 A/mallard/Sweden/101831/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513341 A/mallard/Sweden/104681/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513230 A/mallard/Sweden/104839/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI513163 A/mallard/Sweden/105011/2009 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI475927 A/mallard/Iceland/1007/2011 (A/H3N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI470233 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 6 (NA) 2121.1 0.000000e+00 1323/1409 (93%) EPI461617 A/duck/Hunan/S11893/2012 (A/H4N6) segment 6 (NA) 2121.1 0.000000e+00 1324/1410 (93%) EPI965498 A/duck/Bangladesh/26920/2015 (A/H3N6) segment 6 (NA) 2115.5 0.000000e+00 1326/1413 (93%) EPI965369 A/duck/Bangladesh/26948/2015 (A/H3N6) segment 6 (NA) 2115.5 0.000000e+00 1326/1413 (93%) EPI965295 A/duck/Bangladesh/26918/2015 (A/H3N6) segment 6 (NA) 2115.5 0.000000e+00 1326/1413 (93%) EPI692554 A/duck/Jiangxi/S2443/2012 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI540382 A/duck/Bangladesh/1784/2010 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1322/1409 (93%) EPI540350 A/duck/Bangladesh/1783/2010 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1322/1409 (93%) EPI514901 A/mallard/Sweden/105093/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513514 A/mallard/Sweden/101524/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1324/1411 (93%) EPI513507 A/mallard/Sweden/101504/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513493 A/mallard/Sweden/101329/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513475 A/mallard/Sweden/101642/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513468 A/mallard/Sweden/101640/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1324/1411 (93%) EPI513424 A/mallard/Sweden/101782/2009 (A/H0) segment 6 (NA) 2115.5 0.000000e+00 1324/1411 (93%) EPI513386 A/mallard/Sweden/102029/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513379 A/mallard/Sweden/102024/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513334 A/mallard/Sweden/102157/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513327 A/mallard/Sweden/102124/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1324/1411 (93%) EPI513320 A/mallard/Sweden/102114/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513306 A/mallard/Sweden/102045/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513244 A/mallard/Sweden/104931/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513216 A/mallard/Sweden/104793/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1324/1411 (93%) EPI513209 A/mallard/Sweden/104690/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1324/1411 (93%) EPI513205 A/mallard/Sweden/102250/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1324/1411 (93%) EPI513198 A/mallard/Sweden/124418/2010 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1322/1409 (93%) EPI513184 A/mallard/Sweden/105516/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI513177 A/mallard/Sweden/105137/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI395389 A/duck/India/WB-NIV10736/2009 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1322/1409 (93%) EPI357825 A/duck/Mongolia/OIE-7438/2011 (A/H4N6) segment 6 (NA) 2115.5 0.000000e+00 1323/1410 (93%) EPI222097 A/garganey/Altai/1216/2007 (A/H3N6) segment 6 (NA) 2111.8 0.000000e+00 1323/1411 (93%)
  6. Descriptions Align Segment-ID Name Score E-Value Identity EPI1131088 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1131096 A/Great Black-backed Gull/Netherlands/2/2017 (A/H5N6) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019590 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1019646 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1019622 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1019430 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1019406 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI1019478 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019438 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI954583 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI990770 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI961449 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI954813 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI942935 A/turkey/England/003778/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3042.6 0.000000e+00 1685/1704 (98%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3038.9 0.000000e+00 1684/1704 (98%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019558 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019494 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1019398 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI1007667 A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3037.0 0.000000e+00 1684/1704 (98%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 3033.3 0.000000e+00 1682/1702 (98%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI931207 A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI931145 A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3031.5 0.000000e+00 1683/1704 (98%) EPI1129916 A/Great Black-backed Gull/Netherlands/1/2017 (A/H5N6) segment 4 (HA) 3027.8 0.000000e+00 1639/1639 (100%) EPI1040223 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA) 3027.8 0.000000e+00 1682/1704 (98%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 3027.8 0.000000e+00 1682/1704 (98%) EPI1061371 A/chicken/Belgium/5990/2017 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI954671 A/Duck/Hungary/1588/2017 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI922508 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI909420 A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI909412 A/chicken/Voronezh/19/2017 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI861224 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI860519 A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%) EPI860393 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA) 3025.9 0.000000e+00 1682/1704 (98%)
  7. Isolate detail Isolate name: A/Great Black-backed Gull/Netherlands/1/2017 Isolate ID: EPI_ISL_289713 Passage details/history: MDCK1 Type: A / H5N6 Lineage: Sample information Collection date: 2017-12-18 Host Larus marinus Additional host information: Domestic status: Wild Is vaccinated: Location: Netherlands / Provincie Noord-Holland Additional location information: Health status: Dead Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Erasmus Medical Center Sample ID given by the sample provider: 320-157 Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Submitting lab: Erasmus Medical Center Sample ID given by the submitting laboratory: 320-157 Authors: Poen,MJ; Bestebroer, TM; Kelder,L; Scheuer,RD; Koopmans,MPG; Van Der Jeugd, HP; Fouchier,RAM Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/Great Black-backed Gull/Netherlands/1/2017 2307 EPI1131085 PB1 A/Great Black-backed Gull/Netherlands/1/2017 2321 EPI1131086 PA A/Great Black-backed Gull/Netherlands/1/2017 2214 EPI1131087 HA A/Great Black-backed Gull/Netherlands/1/2017 1775 EPI1131088 NP A/Great Black-backed Gull/Netherlands/1/2017 1343 EPI1131089 NA A/Great Black-backed Gull/Netherlands/1/2017 1406 EPI1131090 MP A/Great Black-backed Gull/Netherlands/1/2017 988 EPI1131091 NS A/Great Black-backed Gull/Netherlands/1/2017 851 EPI1131092 Submitter information Submitter: Poen, Maria Johanna Submission Date: 2017-12-30 Last modifier: Poen, Maria Johanna Last modified: 2017-12-30 Address: Erasmus Medical Center Department of Virology Dr. Molewaterplein 50 3015GE Rotterdam Netherlands
  8. H5N2 Clade 2.3.4.4 In Kostromskaya Russia

    Map Update https://www.google.com/maps/d/u/0/edit?hl=en&hl=en&mid=16dNNG1DKd0pSjdndXP7Qe5alqT3BHwnk&ll=57.79192457032472%2C41.0805367592468&z=16
  9. In the 2016/2017 season H5N8 Clade 2.3.4.4 spread widely in Asia, Europe, and Africa. In the 2017/2018 season H5N6 with a Eurasian N6 was reported after a late appearance in 2016/2017 season in Europe. Now a HPAI H5N2 has been reported in western Russia, suggesting multiple clade 2.3.4.4 serotypes will be co-circulating in Europe and beyond in 2018.
  10. H5N2 Clade 2.3.4.4 In Kostromskaya Russia

    Date of start of the event 17/12/2017 Outbreak Status Continuing Date of resolution of the outbreak Province KOSTROMSKAYA OBLAST District Kostromskoy Sub-district Epidemiological Unit Type Farm Location ZAO Pticefabrika Kostromskaya Latitude 57.791207 Longitude 41.082189 Description of Affected Population Affected animals Species At risk Cases Deaths Killed and disposed of Birds 663503 44112 44112 Total Animals 663503 44112 44112 0
  11. H5N2 Clade 2.3.4.4 In Kostromskaya Russia

    Highly pathogenic avian influenza, Russia Information received on 29/12/2017 from Dr Evgeny Nepoklonov, Vice-minister, Ministry of Agriculture, Ministry of Agriculture, Moscow, Russia Summary Report type Immediate notification Date of start of the event 17/12/2017 Date of confirmation of the event 19/12/2017 Report date 29/12/2017 Date submitted to OIE 29/12/2017 Reason for notification New strain of a listed disease in the country Causal agent Highly pathogenic avian influenza virus Serotype H5N2 Nature of diagnosis Clinical, Laboratory (advanced) This event pertains to a defined zone within the country New outbreaks (1) Outbreak 1 ZAO Pticefabrika Kostromskaya, Kostromskoy, KOSTROMSKAYA OBLAST Date of start of the outbreak 17/12/2017 Outbreak status Continuing (or date resolved not provided) Epidemiological unit Farm Affected animals Species Susceptible Cases Deaths Killed and disposed of Slaughtered Birds 663503 44112 44112 0 Summary of outbreaks Total outbreaks: 1 Total animals affected Species Susceptible Cases Deaths Killed and disposed of Slaughtered Birds 663503 44112 44112 0 Outbreak statistics Species Apparent morbidity rate Apparent mortality rate Apparent case fatality rate Proportion susceptible animals lost* Birds 6.65% 6.65% 100.00% ** *Removed from the susceptible population through death, destruction and/or slaughter **Not calculated because of missing information Epidemiology Source of the outbreak(s) or origin of infection Unknown or inconclusive Control measures Measures applied Movement control inside the country Surveillance within containment and/or protection zone Screening Quarantine Official disposal of carcasses, by-products and waste Stamping out Control of wildlife reservoirs Disinfection Vaccination prohibited No treatment of affected animals Measures to be applied No other measures Diagnostic test results Laboratory name and type Species Test Test date Result All-Russian Research Institute for Animal Health (FGBI-ARRIAH) (National laboratory) Birds reverse transcription - polymerase chain reaction (RT-PCR) 19/12/2017 Positive Future Reporting The event is continuing. Weekly follow-up reports will be submitted. Map of outbreak locations http://www.oie.int/wahis_2/public/wahid.php/Reviewreport/Review?page_refer=MapFullEventReport&reportid=25549
  12. Descriptions Align Segment-ID Name Score E-Value Identity EPI1081971 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 6 (NA) 2610.4 0.000000e+00 1413/1413 (100%) EPI1081923 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 6 (NA) 2593.8 0.000000e+00 1410/1413 (99%) EPI954606 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 6 (NA) 2577.2 0.000000e+00 1407/1413 (99%) EPI954574 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 6 (NA) 2577.2 0.000000e+00 1407/1413 (99%) EPI909446 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 6 (NA) 2577.2 0.000000e+00 1407/1413 (99%) EPI1040226 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 6 (NA) 2571.7 0.000000e+00 1406/1413 (99%) EPI1040224 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 6 (NA) 2568.0 0.000000e+00 1405/1413 (99%) EPI961469 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1403/1413 (99%) EPI961461 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1403/1413 (99%) EPI909430 A/turkey/Rostov/11/2017 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1403/1413 (99%) EPI869939 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1403/1413 (99%) EPI868853 A/Common-coot/Egypt/CA285/2016 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1403/1413 (99%) EPI1045976 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1045968 A/unknown/Tatarstan/86/2017 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1045618 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1032554 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1032547 A/Goose/Hungary/64909/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1032539 A/Goose/Hungary/63743/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1032523 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1032515 A/Goose/Hungary/59763/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1019733 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1019637 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1019621 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1019581 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1019549 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1019509 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1019477 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1019437 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1019397 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI962065 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI962044 A/Duck/Hungary/54738/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI961451 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI959538 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI954678 A/Greylag_goose/Hungary/1941/2017 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI954638 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI942937 A/turkey/England/003778/2017 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI909454 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI909406 A/chicken/Voronezh/18/2017 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI909398 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI866981 A/duck/Hungary/60441/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI860515 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI859209 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1402/1413 (99%) EPI1019533 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 6 (NA) 2545.8 0.000000e+00 1400/1411 (99%) EPI956129 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 6 (NA) 2545.8 0.000000e+00 1401/1413 (99%) EPI869689 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2545.8 0.000000e+00 1400/1411 (99%) EPI1117238 A/mute swan/Czech Republic/964-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI1045610 A/chicken/Rostov/44/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI1032531 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI1019677 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI1019645 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI1019557 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI1019525 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI1019429 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI1019405 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI990769 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI962055 A/Duck/Hungary/55764/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI961499 A/shelduck/Italy/17VIR1572-24/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI956127 A/Goose/Hungary/59712/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI954844 A/Mallard/Hungary/5821/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI954828 A/Chicken/Hungary/1751/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI954582 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI954538 A/Goose/Hungary/65817/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI942945 A/chicken/Wales/000023/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI909462 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI909438 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI909422 A/chicken/Voronezh/20/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI909414 A/chicken/Voronezh/19/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI909390 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI909382 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI866973 A/chicken/Hungary/59048/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI860531 A/duck/Hungary/55191/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1401/1413 (99%) EPI1019613 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 6 (NA) 2540.3 0.000000e+00 1399/1411 (99%) EPI1019413 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 6 (NA) 2540.3 0.000000e+00 1399/1411 (99%) EPI1019365 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 6 (NA) 2540.3 0.000000e+00 1399/1411 (99%) EPI1126382 A/mallard/Czech Republic/1219-17_1/2017 (H5N8) (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1126359 A/mute swan/Czech Republic/1155-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1126356 A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1126350 A/mute swan/Czech Republic/967-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1116779 A/Indian Runner Duck/Czech Republic/749-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1093383 A/mute swan/Czech Republic/1058-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1045596 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1032507 A/Goose/Hungary/17985/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1032491 A/Goose/Hungary/17051/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1032483 A/Goose/Hungary/15729/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1032475 A/Goose/Hungary/17261/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1019517 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI973845 A/tawny owl/Germany-SN/R1186/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI959434 A/chicken/Poland/114/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI954868 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI954820 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI954694 A/Turkey/Hungary/2030/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI954662 A/Goose/Hungary/1030/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI954654 A/Duck/Hungary/984/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI954558 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI869935 A/mute swan/Poland/108/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI869933 A/chicken/Poland/79A/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI869811 A/duck/France/161108h/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI868850 A/turkey/England/052131/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI860522 A/goose/Hungary/55128/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%)
  13. Istituto Zooprofilattico Sperimentale Delle Venezie has recently release wild and domestic bird H5N8 sequences collected in August, 2017.
  14. Descriptions Align Segment-ID Name Score E-Value Identity EPI1081969 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1081925 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1693/1704 (99%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1040223 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019646 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019622 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019590 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019430 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019406 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1007667 A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI909420 A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI909412 A/chicken/Voronezh/19/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1040225 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019686 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019478 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019438 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI961467 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI961459 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI954813 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI954583 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI1045597 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019558 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019398 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI990770 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI922508 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI869938 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI861224 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI860393 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1688/1702 (99%) EPI1021130 A/mute swan/Czech Republic/1848-17_2/2017 (H5N8) (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1021129 A/mute swan/Czech Republic/1848-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019854 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019742 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019566 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%)
  15. Isolate detail Isolate name: A/goose/Italy/17VIR6358-3/2017 Isolate ID: EPI_ISL_282143 Passage details/history: clinical sample Type: A / H5N8 Lineage: Sample information Collection date: 2017-08-05 Host Goose Additional host information: Domestic status: Domestic Is vaccinated: Location: Italy / Lombardy / Province of Pavia Additional location information: Chignolo Po Health status: Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Istituto Zooprofilattico Sperimentale Delle Venezie Sample ID given by the sample provider: 17VIR6358-3 Address: Istituto Zooprofilattico Sperimentale Delle Venezie viale dell'Universita 10 35020 Legnaro (PD) Italy Submitting lab: Istituto Zooprofilattico Sperimentale Delle Venezie Sample ID given by the submitting laboratory: 17VIR6358-3 Authors: Bianca,Zecchin; Alice,Fusaro; Gianpiero,Zamperin; Alessia,Schivo; Annalisa,Salviato; Sabrina,Marciano; Silvia,Ormelli; Calogero,Terregino; Isabella,Monne Address: Istituto Zooprofilattico Sperimentale Delle Venezie viale dell'Universita 10 35020 Legnaro (PD) Italy Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/goose/Italy/17VIR6358-3/2017 2341 EPI1081966 PB1 A/goose/Italy/17VIR6358-3/2017 2297 EPI1081967 PA A/goose/Italy/17VIR6358-3/2017 2228 EPI1081968 HA A/goose/Italy/17VIR6358-3/2017 1704 EPI1081969 NP A/goose/Italy/17VIR6358-3/2017 1565 EPI1081970 NA A/goose/Italy/17VIR6358-3/2017 1413 EPI1081971 MP A/goose/Italy/17VIR6358-3/2017 982 EPI1081972 NS A/goose/Italy/17VIR6358-3/2017 877 EPI1081973 Submitter information Submitter: Zecchin, Bianca Submission Date: 2017-10-12 Last modifier: Zecchin, Bianca Last modified: 2017-10-12 Address: Istituto Zooprofilattico Sperimentale Delle Venezie viale dell'Universita 10 35020 Legnaro (PD) Italy
  16. Descriptions Align Segment-ID Name Score E-Value Identity EPI1081973 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1081921 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1032556 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1032542 A/Goose/Hungary/64909/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1032534 A/Goose/Hungary/63743/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1032526 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1032518 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1032510 A/Goose/Hungary/59763/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1032502 A/Goose/Hungary/17985/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1032494 A/Goose/Hungary/17580/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1032486 A/Goose/Hungary/17051/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1032470 A/Goose/Hungary/17261/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI962038 A/Duck/Hungary/54738/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI959557 A/Rook/Hungary/4975/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI959533 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI956131 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI954863 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI954831 A/Mute swan/Hungary/3137/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI954815 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI954721 A/Mute swan/Hungary/3139/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI954673 A/Greylag_goose/Hungary/1941/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI954633 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI954601 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI888092 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI866975 A/chicken/Hungary/59048/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI860533 A/duck/Hungary/55191/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI860520 A/goose/Hungary/55128/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI860517 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 8 (NS) 1500.6 0.000000e+00 812/812 (100%) EPI1126358 A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1119075 A/spoonbill/Taiwan/DB645/2017 (A/H5N6) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1093385 A/mute swan/Czech Republic/1058-17/2017 (H5N8) (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1085346 A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1081898 A/turkey/Czech Republic/38-17_1/2017 (H5N8) (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1081886 A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1045979 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1045621 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1045599 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1040235 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1040230 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1032478 A/Goose/Hungary/15729/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1019848 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1019824 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1019816 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1019808 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1019760 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1019712 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1019624 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1019528 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1007679 A/peacock/Belgium/1017/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI969258 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI962059 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI962048 A/Duck/Hungary/55764/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI961471 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI961463 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI956122 A/Goose/Hungary/59712/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI954839 A/Mallard/Hungary/5821/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI954823 A/Chicken/Hungary/1751/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI954745 A/Chicken/Hungary/2496/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI954713 A/Mute swan/Hungary/2825/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI954705 A/Mute swan/Hungary/2508/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI954585 A/turkey/Italy/17VIR973-2/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI954569 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI953757 A/mallard/Hungary/57857/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI916717 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI909470 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI909448 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI909440 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI909424 A/chicken/Voronezh/20/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI909416 A/chicken/Voronezh/19/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI909408 A/chicken/Voronezh/18/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI909400 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI909392 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI909384 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI909368 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI869947 A/herring gull/Poland/84/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI869691 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI866979 A/duck/Hungary/60441/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI860499 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI860397 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI859211 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 8 (NS) 1495.1 0.000000e+00 811/812 (99%) EPI1007671 A/chicken/Belgium/807/2017 (A/H5N8) segment 8 (NS) 1491.4 0.000000e+00 810/812 (99%) EPI1122897 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1122889 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1122881 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1117257 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1081891 A/chicken/Czech Republic/55-17_1/2017 (H5N8) (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1045971 A/unknown/Tatarstan/86/2017 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019872 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019856 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019840 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019832 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019800 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019792 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019784 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019776 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019768 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019752 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019688 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%) EPI1019680 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 8 (NS) 1489.5 0.000000e+00 810/812 (99%)
  17. Descriptions Align Segment-ID Name Score E-Value Identity EPI1081970 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1081922 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI1040234 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI954600 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI954568 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 5 (NP) 2760.0 0.000000e+00 1496/1497 (99%) EPI1045595 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI961460 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI909445 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI909421 A/chicken/Voronezh/20/2017 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI909413 A/chicken/Voronezh/19/2017 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI909405 A/chicken/Voronezh/18/2017 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI909397 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI909389 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI909381 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 5 (NP) 2743.4 0.000000e+00 1493/1497 (99%) EPI1117254 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1044548 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019791 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019783 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019775 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019767 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019751 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019743 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019695 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019687 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019679 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019663 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019655 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019647 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019479 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019407 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019383 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019367 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI961468 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI909437 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 5 (NP) 2737.9 0.000000e+00 1492/1497 (99%) EPI1019839 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019831 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019799 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019735 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019719 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019703 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019623 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019607 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019559 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019527 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI1019375 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI961450 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI954776 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI909453 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI906264 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI888089 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI860394 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 5 (NP) 2732.3 0.000000e+00 1491/1497 (99%) EPI861394 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 5 (NP) 2728.6 0.000000e+00 1490/1497 (99%) EPI1045609 A/chicken/Rostov/44/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019863 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019855 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019847 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019759 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019711 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019567 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019463 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019455 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019447 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019439 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1019359 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI990779 A/mute swan/Germany-NI/AR1529-L02145/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI988592 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI954752 A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI909461 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI909429 A/turkey/Rostov/11/2017 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI909365 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI906263 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI888670 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI860402 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI859656 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 5 (NP) 2726.8 0.000000e+00 1490/1497 (99%) EPI1122886 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1122878 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1045975 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1045967 A/unknown/Tatarstan/86/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1045617 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1040231 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019871 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019823 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019815 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019807 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019615 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019599 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019591 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019551 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019543 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019511 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019503 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019487 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019471 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI1019415 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI954870 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI954854 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI954806 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI954656 A/Goose/Hungary/1030/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI942936 A/turkey/England/003778/2017 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1489/1497 (99%) EPI926626 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 5 (NP) 2721.2 0.000000e+00 1488/1497 (99%)
  18. Descriptions Align Segment-ID Name Score E-Value Identity EPI1081968 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1081920 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI1040236 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI954603 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI954571 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 3 (PA) 3934.5 0.000000e+00 2144/2151 (99%) EPI1019730 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019634 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019578 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019434 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019426 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI909443 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI868847 A/turkey/England/052131/2016 (A/H5N8) segment 3 (PA) 3912.3 0.000000e+00 2140/2151 (99%) EPI1019674 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019642 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019618 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019602 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019514 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019506 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019474 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1019402 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI990766 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI942934 A/turkey/England/003778/2017 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI909427 A/turkey/Rostov/11/2017 (A/H5N8) segment 3 (PA) 3906.8 0.000000e+00 2139/2151 (99%) EPI1045594 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019842 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019834 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019786 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019698 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019594 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019570 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019554 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019490 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI1019482 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI969253 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI909459 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI909451 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI860400 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI860235 A/wild duck/Poland/82A/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI877540 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 3 (PA) 3897.6 0.000000e+00 2137/2151 (99%) EPI863848 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 3 (PA) 3897.6 0.000000e+00 2137/2151 (99%) EPI1122892 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1045608 A/chicken/Rostov/44/2017 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1040229 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019866 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019858 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019778 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019754 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019682 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019586 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019546 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019418 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019386 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1019370 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI961466 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI961448 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI954555 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI881285 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI869686 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI863864 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI860392 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI859658 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI1122884 A/chicken/Greece/39_2017a/2017 (A/H5N6) segment 3 (PA) 3893.9 0.000000e+00 2136/2151 (99%) EPI1122876 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 3 (PA) 3893.9 0.000000e+00 2136/2151 (99%) EPI863833 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 3 (PA) 3893.9 0.000000e+00 2136/2151 (99%) EPI863825 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 3 (PA) 3893.9 0.000000e+00 2136/2151 (99%) EPI1045974 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1045616 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019874 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019762 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019610 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019538 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019522 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019498 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019458 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019394 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI1019362 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI967466 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI961458 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI954873 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI954857 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI954809 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI954779 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI931206 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI861185 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI863856 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 3 (PA) 3886.5 0.000000e+00 2134/2151 (99%) EPI1045966 A/unknown/Tatarstan/86/2017 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019850 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019826 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019818 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019810 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019714 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019530 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019466 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019450 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI1019410 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI954755 A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI942942 A/chicken/Wales/000023/2016 (A/H5N8) segment 3 (PA) 3880.9 0.000000e+00 2134/2151 (99%) EPI909363 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 3 (PA) 3880.9 0.000000e+00 2134/2151 (99%) EPI1019626 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI1007674 A/peacock/Belgium/1017/2017 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%)
  19. Descriptions Align Segment-ID Name Score E-Value Identity EPI1081919 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI1081967 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 2 (PB1) 4189.3 0.000000e+00 2272/2274 (99%) EPI954573 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 2 (PB1) 4169.0 0.000000e+00 2268/2274 (99%) EPI954605 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 2 (PB1) 4167.2 0.000000e+00 2268/2274 (99%) EPI1040237 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 2 (PB1) 4143.2 0.000000e+00 2263/2274 (99%) EPI909442 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 2 (PB1) 4139.5 0.000000e+00 2263/2274 (99%) EPI1040228 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 2 (PB1) 4130.2 0.000000e+00 2261/2274 (99%) EPI909458 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI909450 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI961447 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI1117251 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1045973 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2258/2275 (99%) EPI1045965 A/unknown/Tatarstan/86/2017 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2258/2275 (99%) EPI1019844 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019836 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019788 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019780 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019724 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019716 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019708 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019692 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019684 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019652 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019596 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019460 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019396 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019388 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019380 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019372 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI1019364 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI961465 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2258/2275 (99%) EPI956130 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI922322 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI860495 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI860390 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI967462 A/domestic duck/Germany-MV/R9764/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI1045615 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2257/2275 (99%) EPI1045593 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2257/2275 (99%) EPI1044546 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019876 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019868 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019860 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019852 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019828 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019820 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019812 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019804 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019796 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019772 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019756 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019668 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019660 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019572 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019564 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019540 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019500 A/Eur_Wig/NL-Akkrum/16015817-003/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019484 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019468 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019452 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019420 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019412 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI969252 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI961456 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2257/2275 (99%) EPI954781 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI909362 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI885204 A/domestic duck/Germany-MV/R9869/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI881281 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI881276 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI860398 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI859659 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI1019764 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI1019748 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI1019700 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI1019628 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI1019556 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI1019532 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI962063 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI954811 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI954661 A/Goose/Hungary/1030/2017 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI954581 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI931205 A/chicken/Germany-MV/R10048/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI859205 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI1122891 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI1122875 A/chicken/Greece/39_2017/2017 (A/H5N6) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI1019740 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI1019612 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI1019548 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI1019516 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI1019444 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI1007673 A/peacock/Belgium/1017/2017 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI1007665 A/chicken/Belgium/807/2017 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI954875 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI954867 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI954859 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI954819 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI954733 A/Mute swan/Hungary/3513/2017 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI909466 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%) EPI860526 A/goose/Hungary/55128/2016 (A/H5N8) segment 2 (PB1) 4089.6 0.000000e+00 2254/2274 (99%)
  20. Descriptions Align Segment-ID Name Score E-Value Identity EPI1081966 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI1081918 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI954572 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 1 (PB2) 4178.2 0.000000e+00 2274/2280 (99%) EPI1040238 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 1 (PB2) 4172.7 0.000000e+00 2273/2280 (99%) EPI954604 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 1 (PB2) 4161.6 0.000000e+00 2271/2280 (99%) EPI1040227 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI909441 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 1 (PB2) 4150.5 0.000000e+00 2269/2280 (99%) EPI1045592 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1007672 A/peacock/Belgium/1017/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI1007664 A/chicken/Belgium/807/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI961464 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 1 (PB2) 4145.0 0.000000e+00 2268/2280 (99%) EPI961455 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 1 (PB2) 4139.5 0.000000e+00 2267/2280 (99%) EPI1045972 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%) EPI1045964 A/unknown/Tatarstan/86/2017 (A/H5N8) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%) EPI1045614 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 1 (PB2) 4133.9 0.000000e+00 2266/2280 (99%) EPI926625 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI909433 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 1 (PB2) 4128.4 0.000000e+00 2265/2280 (99%) EPI1019555 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2264/2280 (99%) EPI869684 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 1 (PB2) 4122.8 0.000000e+00 2265/2281 (99%) EPI1019675 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019619 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019475 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019427 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019395 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI954874 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI954858 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI888085 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 1 (PB2) 4117.3 0.000000e+00 2263/2280 (99%) EPI1019843 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019835 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019779 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019771 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019747 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019739 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019731 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019723 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019707 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019699 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019683 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019667 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019547 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019523 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2263/2281 (99%) EPI1019515 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019507 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019467 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019459 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019451 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019411 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019387 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019379 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI1019363 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI954810 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI954756 A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI881279 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI863846 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI863831 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI863823 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI860233 A/wild duck/Poland/82A/2016 (A/H5N8) segment 1 (PB2) 4111.8 0.000000e+00 2262/2280 (99%) EPI988591 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 1 (PB2) 4108.1 0.000000e+00 2261/2280 (99%) EPI942932 A/turkey/England/003778/2017 (A/H5N8) segment 1 (PB2) 4108.1 0.000000e+00 2261/2280 (99%) EPI868845 A/turkey/England/052131/2016 (A/H5N8) segment 1 (PB2) 4108.1 0.000000e+00 2261/2280 (99%) EPI863854 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 1 (PB2) 4108.1 0.000000e+00 2261/2280 (99%) EPI1127535 A/mute swan/Shimane/3211A001/2017 (A/H5N6) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1117250 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019787 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019691 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019659 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019643 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019635 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019603 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019587 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019571 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019539 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019491 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019443 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019435 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019419 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI1019371 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI990767 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI969251 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI961446 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI954660 A/Goose/Hungary/1030/2017 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI942940 A/chicken/Wales/000023/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI909457 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI909449 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI909417 A/chicken/Voronezh/20/2017 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI909409 A/chicken/Voronezh/19/2017 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI909401 A/chicken/Voronezh/18/2017 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI909385 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI909377 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 1 (PB2) 4106.2 0.000000e+00 2261/2280 (99%) EPI954556 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 1 (PB2) 4102.5 0.000000e+00 2260/2280 (99%) EPI1122890 A/chicken/Greece/39_2017b/2017 (A/H5N6) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI1019875 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI1019867 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI1019859 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI1019851 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI1019827 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI1019819 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI1019811 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI1019803 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%) EPI1019755 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 1 (PB2) 4100.7 0.000000e+00 2260/2280 (99%)
  21. Descriptions Align Segment-ID Name Score E-Value Identity EPI1081972 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1081924 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI1040233 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI954602 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI909447 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI1045978 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1045970 A/unknown/Tatarstan/86/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1045620 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1040232 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1019729 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1019673 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1019641 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1019633 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1019617 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1019585 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1019577 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1019489 A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1019425 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI954570 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI942946 A/chicken/Wales/000023/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI868851 A/turkey/England/052131/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI1019601 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI1019545 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI1019529 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI1019521 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI1019513 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI1019505 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI1019473 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI1019433 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI1019401 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI961470 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI961462 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI961452 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI954578 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI942938 A/turkey/England/003778/2017 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI909463 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI909455 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI909439 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI869690 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI990765 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 7 (MP) 1785.0 0.000000e+00 976/981 (99%) EPI1117256 A/T_Dk/NL-Werkendam/16014159-001/2016 (A/H5N5) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1045598 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019841 A/T_Dk/NL-Zeewolde/16013976-005/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019833 A/T_Dk/NL-Zeewolde/16013976-004-006/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019801 A/T_Dk/NL-Werkendam/16014159-003/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019793 A/T_Dk/NL-Werkendam/16014159-002/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019785 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019777 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019745 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019721 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019705 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019657 A/Go/NL-Roggebotsluis/16014462-010/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019625 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019561 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019481 A/Dk/NL-Rotterdam/16014008-001-005/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019457 A/Dk/NL-Biddinghuizen/16015083-016-020/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019449 A/Dk/NL-Biddinghuizen/16014829-011-015/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019441 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019409 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019385 A/C_Gull/NL-Slootdorp/16014102-003/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019369 A/Bl_H_gull/NL-Slootdorp/16014102-002/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1019361 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI967142 A/turkey/Germany-NI/R9807/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI956132 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI909431 A/turkey/Rostov/11/2017 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI888091 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI860404 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI859654 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI1117264 A/M_Swan/NL-Groningen/16015826-001/2016 (A/H5N5) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1044552 A/mute swan/Kaliningrad/132/2017 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1032553 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1032527 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1032519 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1032511 A/Goose/Hungary/59763/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1032503 A/Goose/Hungary/17985/2017 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1032495 A/Goose/Hungary/17580/2017 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1032487 A/Goose/Hungary/17051/2017 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1032479 A/Goose/Hungary/15729/2017 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019873 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019849 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019825 A/T_Dk/NL-Zeewolde/16013976-004/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019817 A/T_Dk/NL-Zeewolde/16013976-001-003/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019809 A/T_Dk/NL-Zeewolde/16013976-001/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019769 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019761 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019753 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019697 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019689 A/Gull1/NL-Marker Wadden/16014466-011/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019681 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019665 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019649 A/G_c_grebe/NL-Monnickendam/16013865-009-010/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019593 A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019569 A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019553 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019537 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019465 A/Dk/NL-Biddinghuizen/16015145-021-025/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019417 A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI1019377 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI969257 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%)
  22. Descriptions Align Segment-ID Name Score E-Value Identity EPI1081923 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 6 (NA) 2610.4 0.000000e+00 1413/1413 (100%) EPI1081971 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 6 (NA) 2593.8 0.000000e+00 1410/1413 (99%) EPI954606 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 6 (NA) 2560.6 0.000000e+00 1404/1413 (99%) EPI954574 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 6 (NA) 2560.6 0.000000e+00 1404/1413 (99%) EPI909446 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 6 (NA) 2560.6 0.000000e+00 1404/1413 (99%) EPI1040226 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1403/1413 (99%) EPI1040224 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 6 (NA) 2551.3 0.000000e+00 1402/1413 (99%) EPI961469 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI961461 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI909430 A/turkey/Rostov/11/2017 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI869939 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI868853 A/Common-coot/Egypt/CA285/2016 (A/H5N8) segment 6 (NA) 2538.4 0.000000e+00 1400/1413 (99%) EPI1045976 A/unknown/Tatarstan/94/2017 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1045968 A/unknown/Tatarstan/86/2017 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1045618 A/chicken/Tatarstan/88/2017 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1032554 A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1032547 A/Goose/Hungary/64909/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1032539 A/Goose/Hungary/63743/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1032523 A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1032515 A/Goose/Hungary/59763/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1019733 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1019637 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1019621 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1019581 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1019549 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1019509 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1019477 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1019437 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1019397 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI962065 A/Turkey/Hungary/53136/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI962044 A/Duck/Hungary/54738/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI961451 A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI959538 A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI954678 A/Greylag_goose/Hungary/1941/2017 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI954638 A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI942937 A/turkey/England/003778/2017 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI909454 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI909406 A/chicken/Voronezh/18/2017 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI909398 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI866981 A/duck/Hungary/60441/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI860515 A/Mulard_duck/Hungary/54494/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI859209 A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 6 (NA) 2532.9 0.000000e+00 1399/1413 (99%) EPI1019533 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 6 (NA) 2529.2 0.000000e+00 1397/1411 (99%) EPI956129 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 6 (NA) 2529.2 0.000000e+00 1398/1413 (98%) EPI869689 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2529.2 0.000000e+00 1397/1411 (99%) EPI1117238 A/mute swan/Czech Republic/964-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI1045610 A/chicken/Rostov/44/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI1032531 A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI1019677 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI1019645 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI1019557 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI1019525 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI1019429 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI1019405 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI990769 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI962055 A/Duck/Hungary/55764/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI961499 A/shelduck/Italy/17VIR1572-24/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI956127 A/Goose/Hungary/59712/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI954844 A/Mallard/Hungary/5821/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI954828 A/Chicken/Hungary/1751/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI954582 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI954538 A/Goose/Hungary/65817/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI942945 A/chicken/Wales/000023/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI909462 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI909438 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI909422 A/chicken/Voronezh/20/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI909414 A/chicken/Voronezh/19/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI909390 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI909382 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI866973 A/chicken/Hungary/59048/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI860531 A/duck/Hungary/55191/2016 (A/H5N8) segment 6 (NA) 2527.3 0.000000e+00 1398/1413 (98%) EPI1019613 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 6 (NA) 2523.6 0.000000e+00 1396/1411 (98%) EPI1019413 A/Ch/NL-Den Oever/16014231-001/2016 (A/H5N8) segment 6 (NA) 2523.6 0.000000e+00 1396/1411 (98%) EPI1019365 A/Bk_swan/NL-Den Oever/16013973-002/2016 (A/H5N8) segment 6 (NA) 2523.6 0.000000e+00 1396/1411 (98%) EPI1126382 A/mallard/Czech Republic/1219-17_1/2017 (H5N8) (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1126359 A/mute swan/Czech Republic/1155-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1126356 A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1126350 A/mute swan/Czech Republic/967-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1116779 A/Indian Runner Duck/Czech Republic/749-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1093383 A/mute swan/Czech Republic/1058-17/2017 (H5N8) (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1045596 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1032507 A/Goose/Hungary/17985/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1032491 A/Goose/Hungary/17051/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1032483 A/Goose/Hungary/15729/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1032475 A/Goose/Hungary/17261/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI1019517 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI973845 A/tawny owl/Germany-SN/R1186/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI959434 A/chicken/Poland/114/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI954868 A/White_fronted_goose/Hungary/801/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI954820 A/GuineaFowl/Hungary/596/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI954694 A/Turkey/Hungary/2030/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI954662 A/Goose/Hungary/1030/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI954654 A/Duck/Hungary/984/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI954558 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI869935 A/mute swan/Poland/108/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI869933 A/chicken/Poland/79A/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI869811 A/duck/France/161108h/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI868850 A/turkey/England/052131/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%) EPI860522 A/goose/Hungary/55128/2016 (A/H5N8) segment 6 (NA) 2521.8 0.000000e+00 1397/1413 (98%)
  23. Descriptions Align Segment-ID Name Score E-Value Identity EPI1081969 A/goose/Italy/17VIR6358-3/2017 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI1081925 A/swan/Italy/17VIR7064-1/2017 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI954607 A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI954575 A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA) 3103.5 0.000000e+00 1696/1704 (99%) EPI909444 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA) 3098.0 0.000000e+00 1695/1704 (99%) EPI1019630 A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1019614 A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI1007675 A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA) 3092.4 0.000000e+00 1694/1704 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1693/1704 (99%) EPI1045611 A/chicken/Rostov/44/2017 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019638 A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019582 A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019550 A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019534 A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019526 A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019518 A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1019510 A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI943320 A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI909452 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI888088 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI1040223 A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI1019766 A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019718 A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019678 A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019646 A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019622 A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019606 A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019590 A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019430 A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1019406 A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1007667 A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI954877 A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI954861 A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI954559 A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI942943 A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI909436 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI909420 A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI909412 A/chicken/Voronezh/19/2017 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI1040225 A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019870 A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019862 A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019686 A/Gull/NL-Marker Wadden/16014466-020/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019478 A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI1019438 A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI990794 A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI969347 A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI969254 A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI961467 A/chicken/Sergiyev Posad/39/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI961459 A/chicken/Sergiyev Posad/38/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI954813 A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI954583 A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909428 A/turkey/Rostov/11/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909404 A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909396 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909388 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909380 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI869940 A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI869936 A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI869931 A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI861011 A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI860401 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI859653 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI909364 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI869930 A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI1045597 A/chicken/Shchyolkovo/47/2017 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019878 A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019790 A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019782 A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019774 A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019758 A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019750 A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019734 A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019726 A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019710 A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019702 A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019670 A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019558 A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019542 A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019446 A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019398 A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI1019382 A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI990802 A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI990770 A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI954783 A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI922508 A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI916604 A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI869938 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI861224 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI860393 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI907346 A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1688/1702 (99%) EPI1021130 A/mute swan/Czech Republic/1848-17_2/2017 (H5N8) (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1021129 A/mute swan/Czech Republic/1848-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1021106 A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019854 A/T_Dk/NL-Zeewolde/16013976-006/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019742 A/Mal/NL-Mastenbroek/16015378-002/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI1019566 A/Eur_Wig/NL-Groningen/16015376-003/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%)
  24. Isolate detail Isolate name: A/swan/Italy/17VIR7064-1/2017 Isolate ID: EPI_ISL_282141 Passage details/history: clinical sample Type: A / H5N8 Lineage: Sample information Collection date: 2017-08-25 Host Cygnus olor Additional host information: Domestic status: Wild Is vaccinated: Location: Italy / Lombardy / Province of Bergamo Additional location information: Mozzanica Health status: Dead Specimen source: Organ Strain or commercial product name used for vaccination: Institute information Originating lab: Istituto Zooprofilattico Sperimentale Delle Venezie Sample ID given by the sample provider: 17VIR7064-1 Address: Istituto Zooprofilattico Sperimentale Delle Venezie viale dell'Universita 10 35020 Legnaro (PD) Italy Submitting lab: Istituto Zooprofilattico Sperimentale Delle Venezie Sample ID given by the submitting laboratory: 17VIR7064-1 Authors: Bianca,Zecchin; Alice,Fusaro; Gianpiero,Zamperin; Alessia,Schivo; Annalisa,Salviato; Sabrina,Marciano; Silvia,Ormelli; Calogero,Terregino; Isabella,Monne Address: Istituto Zooprofilattico Sperimentale Delle Venezie viale dell'Universita 10 35020 Legnaro (PD) Italy Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/swan/Italy/17VIR7064-1/2017 2341 EPI1081918 PB1 A/swan/Italy/17VIR7064-1/2017 2297 EPI1081919 PA A/swan/Italy/17VIR7064-1/2017 2228 EPI1081920 HA A/swan/Italy/17VIR7064-1/2017 1704 EPI1081925 NP A/swan/Italy/17VIR7064-1/2017 1565 EPI1081922 NA A/swan/Italy/17VIR7064-1/2017 1413 EPI1081923 MP A/swan/Italy/17VIR7064-1/2017 982 EPI1081924 NS A/swan/Italy/17VIR7064-1/2017 877 EPI1081921 Submitter information Submitter: Zecchin, Bianca Submission Date: 2017-10-11 Last modifier: Zecchin, Bianca Last modified: 2017-10-11 Address: Istituto Zooprofilattico Sperimentale Delle Venezie viale dell'Universita 10 35020 Legnaro (PD) Italy
  25. edit Name Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date edit Name Isolate ID Subtype Passage PB2 PB1 PA HA NP NA MP NS HE P3 Collection date A/goose/Italy/17VIR6358-3/2017 EPI_ISL_282143 H5N8 clinical sample 2341 2297 2228 1704 1565 1413 982 877 --- --- 2017-08-05 A/swan/Italy/17VIR7064-1/2017 EPI_ISL_282141 H5N8 clinical sample 2341 2297 2228 1704 1565 1413 982 877 --- --- 2017-08-25 A/turkey/Italy/17VIR5878-3/2017 EPI_ISL_273847 H5N8 clinical sample 2280 2277 2151 1704 1497 1413 982 838 --- --- 2017-07-23
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