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niman

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  1. Key Points • In 2016, a total of 1,297 pregnancies with possible recent Zika virus infection were reported to the U.S. Zika Pregnancy Registry from 44 states. • Approximately one in 10 pregnancies with laboratory-confirmed Zika virus infection resulted in a fetus or infant with Zika virus–associated birth defects. • The proportion of fetuses and infants with Zika virus–associated birth defects was highest among those with first trimester Zika virus infections. • Only 25% of infants from pregnancies with possible recent Zika virus infection reported receiving postnatal neuroimaging. • Identification and follow-up care of infants born to mothers with laboratory evidence of possible recent Zika virus infection during pregnancy and infants with congenital Zika virus infection can ensure that appropriate intervention services are available to affected infants. • Additional information is available at https://www.cdc.gov/vitalsigns/.
  2. Megan R. Reynolds, MPH1; Abbey M. Jones, MPH1; Emily E. Petersen, MD2; Ellen H. Lee, MD3; Marion E. Rice, MPH1,4; Andrea Bingham, PhD5; Sascha R. Ellington, MSPH2; Nicole Evert, MS6; Sarah Reagan-Steiner, MD7; Titilope Oduyebo, MD2; Catherine M. Brown, DVM8; Stacey Martin, MSc9; Nina Ahmad, MD10; Julu Bhatnagar, PhD7; Jennifer Macdonald, MPH11; Carolyn Gould, MD9; Anne D. Fine, MD3; Kara D. Polen, MPH1; Heather Lake-Burger, MPH5; Christina L. Hillard, MA1; Noemi Hall, PhD6,12; Mahsa M. Yazdy, PhD8; Karnesha Slaughter, MPH1; Jamie N. Sommer, MS10; Alys Adamski, PhD1; Meghan Raycraft, MPH1; Shannon Fleck-Derderian, MPH4,13; Jyoti Gupta, MPH11; Kimberly Newsome, MPH1; Madelyn Baez-Santiago, PhD1; Sally Slavinski, DVM3; Jennifer L. White, MPH10; Cynthia A. Moore, MD, PhD1; Carrie K. Shapiro-Mendoza, PhD2; Lyle Petersen, MD9; Coleen Boyle, PhD14; Denise J. Jamieson, MD2; Dana Meaney-Delman, MD13; Margaret A. Honein, PhD1; U.S. Zika Pregnancy Registry Collaboration Corresponding author: Margaret A. Honein, eocbirthdef@cdc.gov, 404-639-3286. Top 1Division of Congenital and Developmental Disorders, National Center on Birth Defects and Developmental Disabilities, CDC; 2Division of Reproductive Health, National Center for Chronic Disease Prevention and Health Promotion, CDC; 3New York City Department of Health & Mental Hygiene; 4Oak Ridge Institute for Science and Education; 5Florida Department of Health; 6Texas Department of State Health Services; 7Division of High-Consequence Pathogens and Pathology, National Center for Emerging and Zoonotic Infectious Diseases, CDC; 8Massachusetts Department of Public Health; 9Division of Vector-Borne Diseases, National Center for Emerging and Zoonotic Infectious Diseases, CDC; 10New York State Department of Health; 11Virginia Department of Health; 12Epidemic Intelligence Service, CDC; 13Office of the Director, National Center for Emerging and Zoonotic Infectious Diseases, CDC; 14Office of the Director, National Center on Birth Defects and Developmental Disabilities, CDC.
  3. HPAI LPAI H7N9 Presser March 24

    Anticipate weekly updates.
  4. HPAI LPAI H7N9 Presser March 24

    Ongoing investigation in Georgia
  5. Immediate notification report Report reference: REF OIE 23367, Report Date: 24/03/2017, Country : China (People's Rep. of) Report Summary Name of sender of the report Dr Zhang Zhongqui Telephone (86-10) 591 928 28 Position Director General Fax (86-10) 591 928 45 Address No.11, Nongzhanguan Nanli Chaoyang District Beijing, 100125 Beijing Email chinadelegate@agri.gov.cn Date submitted to OIE 24/03/2017 Animal type Terrestrial Date of report 24/03/2017 Disease Highly pathogenic avian influenza Date of start of the event 19/03/2017 Causal Agent Highly pathogenic avian influenza virus Date of confirmation of the event 24/03/2017 Serotype(s) H7N9 Diagnosis Clinical, Laboratory (basic), Laboratory (advanced) Reason New strain of a listed disease Clinical signs Yes Country or zone a zone or compartment Number of reported outbreaks submitted= 1, Draft= 0 Outbreak details Province Number of outbreaks City County Unit Type Location Latitude Longitude Start Date End Date: HUNAN- (this report - submitted) - Dongan Farm Yongzhou 26.389 111.311 19/03/2017 Species Measuring units Susceptible Cases Deaths Destroyed Slaughtered Birds Animals 189676 29760 18497 171179 0 Affected Population The event was observed in local layer farm by active surveillance. Outbreak summary: Total outbreaks = 1 (Submitted) Species Susceptible Cases Deaths Destroyed Slaughtered Birds 189676 29760 18497 171179 0 http://www.oie.int/wahis_2/temp/reports/en_imm_0000023367_20170324_164234.pdf
  6. Japan has issue a ban for a new region in Alabama. The center of the restriction zone is a farm in Pickens Co Alabama near the border with Tusaloosa. Therefore the exclusion zone covers areas in both counties. The center of the circle is on a farm owned by Peco Foods. https://www.fsis.usda.gov/wps/portal/fsis/topics/international-affairs/exporting-products/export-library-requirements-by-country/Japan
  7. Japan has now banned poultry in a restriction zone centered in Christian County, Kentucky, which extends to Todd County https://www.fsis.usda.gov/wps/portal/fsis/topics/international-affairs/exporting-products/export-library-requirements-by-country/Japan
  8. Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1k-KvqZz3R_Dhe4TOrFD7aYv34Hs&ll=36.87094919945865%2C-87.595331053125&z=10
  9. Kentucky - Poultry slaughtered on or after February 23, 2017, which originated from or passed through or is slaughtered/processed within the zone shown on the attached map is ineligible. Within the zone, poultry slaughtered and processed before February 23 , 2017 is eligible.*
  10. Peco Foods https://www.pecofoods.com/avianflu.php
  11. Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1k-KvqZz3R_Dhe4TOrFD7aYv34Hs&ll=33.30384513352203%2C-87.8713778043213&z=14
  12. Poultry slaughtered on or after February 14, 2017, which originated from or passed through or is slaughtered/processed within the zones shown on the attached maps (2 pages) is ineligible. Within those zones, poultry slaughtered and processed before February 14 , 2017 is eligible.*
  13. EU has banned poultry from Moore County Tennessee, suggesting further H7N9 spread.
  14. H7N9 Spread To Moore County Tennessee?

    Poultry meat and poultry meat products from Lincoln, Franklin, and Moore Counties in Tennessee and Madison and Jackson Counties in Alabama produced on or after March 4, 2017 are not eligible to export to or transit via the European Union. Poultry meat and poultry meat products from Lincoln, Franklin, and Moore Counties in Tennessee and Madison and Jackson Counties in Alabama produced prior to March 4, 2017 are eligible.* https://www.fsis.usda.gov/wps/portal/fsis/topics/international-affairs/exporting-products/export-library-requirements-by-country/European-Union
  15. National Veterinary Research Institut Poland has release sequences for all 8 gene segments from 2017 H5N5 isolate from a mute swan.
  16. Align Segment-ID Name Score E-Value Identity EPI959439 A/mute swan/Poland/64/2017 (A/H5N5) segment 8 (NS) 1460.0 0.000000e+00 790/790 (100%) EPI858839 A/duck/India/10CA01/2016 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 786/790 (99%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 786/790 (99%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 786/790 (99%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 786/790 (99%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 786/790 (99%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 786/790 (99%) EPI774263 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 786/790 (99%) EPI774255 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 786/790 (99%) EPI909470 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774510 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774502 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774486 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774479 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774471 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774462 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774454 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774446 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774438 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774430 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774422 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774415 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774406 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774398 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774390 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774382 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774373 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774322 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774314 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774306 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774298 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774282 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774247 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774238 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774230 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774222 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774189 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774181 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774172 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774155 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774146 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774138 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774124 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI774117 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 785/790 (99%) EPI925950 A/gadwall/Chany/97/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 784/790 (99%) EPI888092 A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 784/790 (99%) EPI858848 A/painted stork/India/10CA03/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 784/790 (99%) EPI774494 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 784/790 (99%) EPI774348 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 784/790 (99%) EPI774340 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 784/790 (99%) EPI774290 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 784/790 (99%) EPI774273 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 782/787 (99%) EPI774214 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 784/790 (99%) EPI774206 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 784/790 (99%) EPI774197 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 784/790 (99%) EPI774164 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 782/787 (99%) EPI909448 A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI909440 A/goose/Krasnodar/3144/2017 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI909424 A/chicken/Voronezh/20/2017 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI909416 A/chicken/Voronezh/19/2017 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI909408 A/chicken/Voronezh/18/2017 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI909400 A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI909392 A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI909384 A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI909368 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI869947 A/herring gull/Poland/84/2016 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI869691 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI860499 A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI860405 A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI860397 A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI859657 A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI774365 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 781/787 (99%) EPI774331 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 781/787 (99%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 783/790 (99%) EPI959429 A/chicken/Poland/79A/2016 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 782/790 (98%) EPI909464 A/chicken/Kalmykia/2643/2016 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 782/790 (98%) EPI909456 A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 782/790 (98%) EPI909432 A/turkey/Rostov/11/2017 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 782/790 (98%) EPI881283 A/chicken/Germany-MV/R8790/2016 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 782/790 (98%) EPI869813 A/duck/France/161108h/2016 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 782/790 (98%) EPI774357 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 780/787 (99%) EPI952643 A/chicken/Korea/H903/2017 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 782/791 (98%) EPI942947 A/chicken/Wales/000023/2016 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 781/790 (98%) EPI881278 A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 781/790 (98%) EPI868852 A/turkey/England/052131/2016 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 781/790 (98%) EPI863853 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 781/790 (98%) EPI863838 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 781/790 (98%) EPI863830 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 781/790 (98%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1410.1 0.000000e+00 781/790 (98%) EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1408.3 0.000000e+00 779/790 (98%) EPI863861 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 8 (NS) 1406.4 0.000000e+00 780/790 (98%) EPI959420 A/domestic goose/Poland/33/2016 (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 780/790 (98%) EPI952801 A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 781/791 (98%) EPI942939 A/turkey/England/003778/2017 (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 780/790 (98%) EPI887472 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 780/790 (98%) EPI749883 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 781/791 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1404.6 0.000000e+00 781/791 (98%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1393.5 0.000000e+00 779/791 (98%)
  17. Align Segment-ID Name Score E-Value Identity EPI959438 A/mute swan/Poland/64/2017 (A/H5N5) segment 5 (NP) 2730.5 0.000000e+00 1478/1478 (100%) EPI926005 A/domestic_duck/Siberia/49_feather/2016 (A/H6N8) segment 5 (NP) 2658.4 0.000000e+00 1465/1478 (99%) EPI889966 A/mallard duck/Netherlands/7/2014 (A/H6N2) segment 5 (NP) 2608.6 0.000000e+00 1456/1478 (98%) EPI617869 A/mallard/Republic of Georgia/4/2012 (A/H1N1) segment 5 (NP) 2608.6 0.000000e+00 1456/1478 (98%) EPI687188 A/chicken/Scotland/532/2016 (A/H5N1) segment 5 (NP) 2564.3 0.000000e+00 1449/1479 (97%) EPI704357 A/duck/Mongolia/200/2015 (A/H3N8) segment 5 (NP) 2558.7 0.000000e+00 1447/1478 (97%) EPI493029 A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 5 (NP) 2558.7 0.000000e+00 1447/1478 (97%) EPI438282 A/duck/Vietnam/LBM300/2012 (A/H10N2) segment 5 (NP) 2553.2 0.000000e+00 1446/1478 (97%) EPI618038 A/domestic duck/Republic of Georgia/2/2010 (A/H10N7) segment 5 (NP) 2547.7 0.000000e+00 1446/1479 (97%) EPI618025 A/domestic duck/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP) 2547.7 0.000000e+00 1446/1479 (97%) EPI683033 A/wild bird/Wuhan/WHHN58/2014 (A/H1N1) segment 5 (NP) 2542.1 0.000000e+00 1444/1478 (97%) EPI683032 A/wild bird/Wuhan/WHHN16/2014 (A/H1N1) segment 5 (NP) 2542.1 0.000000e+00 1444/1478 (97%) EPI601644 A/duck/Jiangxi/5581/2013 (A/H0) segment 5 (NP) 2536.6 0.000000e+00 1443/1478 (97%) EPI601635 A/duck/Jiangxi/5576/2013 (A/H0) segment 5 (NP) 2536.6 0.000000e+00 1443/1478 (97%) EPI461630 A/duck/Hunan/S1256/2012 (A/H3N8) segment 5 (NP) 2536.6 0.000000e+00 1443/1478 (97%) EPI446508 A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 5 (NP) 2532.9 0.000000e+00 1442/1478 (97%) EPI407865 A/Khaki Campbell duck/Karachi/NARC-23963/2010 (A/H4N6) segment 5 (NP) 2532.9 0.000000e+00 1442/1478 (97%) EPI942171 A/duck/Ganzhou/GZ5/2015 (A/H4N6) segment 5 (NP) 2531.0 0.000000e+00 1442/1478 (97%) EPI909468 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 5 (NP) 2531.0 0.000000e+00 1442/1478 (97%) EPI704373 A/duck/Mongolia/211/2015 (A/H3N8) segment 5 (NP) 2531.0 0.000000e+00 1442/1478 (97%) EPI704365 A/duck/Mongolia/208/2015 (A/H3N8) segment 5 (NP) 2531.0 0.000000e+00 1442/1478 (97%) EPI704316 A/duck/Mongolia/167/2015 (A/H3N8) segment 5 (NP) 2531.0 0.000000e+00 1442/1478 (97%) EPI693707 A/duck/Mongolia/83/2015 (A/H3N8) segment 5 (NP) 2531.0 0.000000e+00 1442/1478 (97%) EPI693699 A/duck/Mongolia/20/2015 (A/H3N8) segment 5 (NP) 2531.0 0.000000e+00 1442/1478 (97%) EPI601705 A/duck/Jiangxi/285/2013 (A/H0) segment 5 (NP) 2531.0 0.000000e+00 1442/1478 (97%) EPI600185 A/migratory duck/Jiangxi/33520/2013 (A/H10N7) segment 5 (NP) 2531.0 0.000000e+00 1443/1479 (97%) EPI600179 A/migratory duck/Jiangxi/33238/2013 (A/H10N7) segment 5 (NP) 2531.0 0.000000e+00 1443/1479 (97%) EPI600173 A/migratory duck/Jiangxi/33195/2013 (A/H10N7) segment 5 (NP) 2531.0 0.000000e+00 1443/1479 (97%) EPI600167 A/migratory duck/Jiangxi/33158/2013 (A/H10N7) segment 5 (NP) 2531.0 0.000000e+00 1443/1479 (97%) EPI600159 A/migratory duck/Jiangxi/33038/2013 (A/H10N7) segment 5 (NP) 2531.0 0.000000e+00 1443/1479 (97%) EPI591918 A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 5 (NP) 2531.0 0.000000e+00 1443/1479 (97%) EPI703486 A/duck/Anhui/FA258/2013 (A/H1N3) segment 5 (NP) 2529.2 0.000000e+00 1441/1477 (97%) EPI703477 A/duck/Yunan/V286/2012 (A/H1N2) segment 5 (NP) 2529.2 0.000000e+00 1441/1477 (97%) EPI704447 A/duck/Mongolia/996/2015 (A/H3N8) segment 5 (NP) 2525.5 0.000000e+00 1441/1478 (97%) EPI617996 A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 5 (NP) 2525.5 0.000000e+00 1441/1478 (97%) EPI617968 A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 5 (NP) 2525.5 0.000000e+00 1441/1478 (97%) EPI591924 A/wild bird/Jiangxi/35982/2013 (A/H7N7) segment 5 (NP) 2525.5 0.000000e+00 1442/1479 (97%) EPI591912 A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 5 (NP) 2525.5 0.000000e+00 1442/1479 (97%) EPI470398 A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 5 (NP) 2525.5 0.000000e+00 1441/1478 (97%) EPI925997 A/mallard/Chany/355/2016 (A/H1N1) segment 5 (NP) 2520.0 0.000000e+00 1440/1478 (97%) EPI925989 A/gadwall/Chany/315/2016 (A/H1N1) segment 5 (NP) 2520.0 0.000000e+00 1440/1478 (97%) EPI925981 A/mallard/Chany/313/2016 (A/H1N1) segment 5 (NP) 2520.0 0.000000e+00 1440/1478 (97%) EPI889141 A/wild bird/Jiangxi/P419/2016 (A/H6N8) segment 5 (NP) 2520.0 0.000000e+00 1440/1478 (97%) EPI841764 A/chicken/Jiangxi/C25/2014 (A/H7N7) segment 5 (NP) 2520.0 0.000000e+00 1441/1479 (97%) EPI683035 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 5 (NP) 2520.0 0.000000e+00 1440/1478 (97%) EPI601836 A/duck/Jiangxi/17142/2013 (A/H0) segment 5 (NP) 2520.0 0.000000e+00 1441/1479 (97%) EPI601684 A/duck/Jiangxi/3961/2013 (A/H0) segment 5 (NP) 2520.0 0.000000e+00 1438/1475 (97%) EPI596424 A/duck/Vietnam/LBM439/2013 (A/H6N6) segment 5 (NP) 2520.0 0.000000e+00 1440/1478 (97%) EPI583947 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 5 (NP) 2520.0 0.000000e+00 1441/1479 (97%) EPI703476 A/duck/Fujian/JF47/2014 (A/H1N1) segment 5 (NP) 2518.1 0.000000e+00 1439/1477 (97%) EPI683042 A/chicken/Wuhan/WHJF/2014 (A/H5N2) segment 5 (NP) 2514.4 0.000000e+00 1439/1478 (97%) EPI683037 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 5 (NP) 2514.4 0.000000e+00 1439/1478 (97%) EPI683036 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 5 (NP) 2514.4 0.000000e+00 1439/1478 (97%) EPI664214 A/duck/Jiangxi/01.14 NCJD034-P/2015(Mixed) (A/H5N6) segment 5 (NP) 2514.4 0.000000e+00 1439/1478 (97%) EPI599810 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 5 (NP) 2514.4 0.000000e+00 1440/1479 (97%) EPI692489 A/duck/Hubei/S2213/2012 (A/H4N2) segment 5 (NP) 2508.9 0.000000e+00 1438/1478 (97%) EPI618599 A/mallard/Sweden/107688/2009 (A/H10N1) segment 5 (NP) 2508.9 0.000000e+00 1438/1478 (97%) EPI617770 A/mallard/Republic of Georgia/15/2011 (A/H10N7) segment 5 (NP) 2508.9 0.000000e+00 1438/1478 (97%) EPI602410 A/duck/Jiangxi/33763/2013 (A/H10N3) segment 5 (NP) 2508.9 0.000000e+00 1439/1479 (97%) EPI602350 A/duck/Jiangxi/33777/2013 (A/H10N3) segment 5 (NP) 2508.9 0.000000e+00 1439/1479 (97%) EPI596635 A/duck/Quang Ninh/14/2013 (A/H3N6) segment 5 (NP) 2508.9 0.000000e+00 1438/1478 (97%) EPI470377 A/wild duck/Jiangxi/19831/2009 (A/H7N7) segment 5 (NP) 2508.9 0.000000e+00 1438/1478 (97%) EPI891012 A/turnstone/Netherlands/1/2010 (A/H3N8) segment 5 (NP) 2503.3 0.000000e+00 1437/1478 (97%) EPI617758 A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 5 (NP) 2503.3 0.000000e+00 1437/1478 (97%) EPI602448 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI602441 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI602403 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI602396 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI602389 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI602382 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI602375 A/duck/Jiangxi/33699/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI602368 A/duck/Jiangxi/33695/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI602343 A/duck/Jiangxi/33775/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI602336 A/duck/Jiangxi/33769/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI602329 A/duck/Jiangxi/33765/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI599873 A/duck/Jiangxi/33778/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI599866 A/duck/Jiangxi/33747/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI599859 A/duck/Jiangxi/33744/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI599852 A/duck/Jiangxi/33701/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI599845 A/duck/Jiangxi/33653/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI599838 A/duck/Jiangxi/33641/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI599831 A/duck/Jiangxi/33629/2013 (A/H10N3) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI590035 A/duck/Quang Ninh/220/2014 (A/H3N2) segment 5 (NP) 2503.3 0.000000e+00 1438/1479 (97%) EPI392508 A/pintail/Korea/1173/09 (A/H7N7) segment 5 (NP) 2503.3 0.000000e+00 1437/1478 (97%) EPI315101 A/mallard/PT/27972-B139/2007 (A/H9N2) segment 5 (NP) 2503.3 0.000000e+00 1437/1478 (97%) EPI602434 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 5 (NP) 2501.5 0.000000e+00 1437/1479 (97%) EPI891060 A/greater white-fronted goose/Netherlands/2/2007 (A/H6N8) segment 5 (NP) 2497.8 0.000000e+00 1437/1479 (97%) EPI889265 A/mallard duck/Netherlands/27/2009 (A/H4N6) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI836615 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI836607 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI823757 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI823749 A/wild duck/Tyva/35/2016 (A/H5N8) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI823461 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI773758 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI602427 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 5 (NP) 2497.8 0.000000e+00 1437/1479 (97%) EPI470441 A/wild waterfowl/Hong Kong/MPM2121/2011 (A/H7N7) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI470440 A/wild waterfowl/Hong Kong/MPL705/2011 (A/H7N7) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI470438 A/common teal/Hong Kong/MPL634/2011 (A/H7N7) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI470436 A/common teal/Hong Kong/MPM1645/2011 (A/H7N1) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%) EPI470411 A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 5 (NP) 2497.8 0.000000e+00 1436/1478 (97%)
  18. Align Segment-ID Name Score E-Value Identity EPI959440 A/mute swan/Poland/64/2017 (A/H5N5) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI774258 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI774250 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 3 (PA) 3901.2 0.000000e+00 2138/2151 (99%) EPI774393 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI774184 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI774120 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI774112 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI774385 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774309 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774301 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774241 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774233 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774167 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774158 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774149 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI773756 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774505 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774489 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774482 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774474 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774465 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774433 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774425 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774377 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774334 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774293 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774285 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774225 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774217 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774209 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774497 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774457 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774449 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774441 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774343 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774276 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774266 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774200 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774192 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774175 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2135/2152 (99%) EPI774141 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774131 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774368 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2134/2152 (99%) EPI774351 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774325 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774317 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI836613 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI836605 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI823755 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI823747 A/wild duck/Tyva/35/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI823459 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774418 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774409 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774401 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI774360 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI909467 A/chicken/Astrakhan/3131/2016 (A/H5N8) segment 3 (PA) 3851.4 0.000000e+00 2129/2151 (98%) EPI858835 A/duck/India/10CA01/2016 (A/H5N8) segment 3 (PA) 3845.8 0.000000e+00 2128/2151 (98%) EPI867456 A/mute swan/Croatia/70/2016 (A/H5N8) segment 3 (PA) 3829.2 0.000000e+00 2123/2148 (98%) EPI959430 A/chicken/Poland/79A/2016 (A/H5N8) segment 3 (PA) 3825.5 0.000000e+00 2124/2151 (98%) EPI869808 A/duck/France/161108h/2016 (A/H5N8) segment 3 (PA) 3823.7 0.000000e+00 2124/2151 (98%) EPI887467 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 3 (PA) 3807.1 0.000000e+00 2121/2151 (98%) EPI959418 A/domestic goose/Poland/33/2016 (A/H5N8) segment 3 (PA) 3801.5 0.000000e+00 2120/2151 (98%) EPI515113 A/muscovy duck/Vietnam/LBM529/2013 (A/H3N8) segment 3 (PA) 3784.9 0.000000e+00 2117/2151 (98%) EPI704445 A/duck/Mongolia/996/2015 (A/H3N8) segment 3 (PA) 3757.2 0.000000e+00 2112/2151 (98%) EPI704306 A/duck/Mongolia/154/2015 (A/H0N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%) EPI704282 A/duck/Mongolia/118/2015 (A/H4N6) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%) EPI693713 A/duck/Mongolia/66/2015 (A/H10N2) segment 3 (PA) 3751.7 0.000000e+00 2111/2151 (98%) EPI704502 A/duck/Mongolia/326/2015 (A/H10N3) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%) EPI704480 A/duck/Mongolia/245/2015 (A/H10N3) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%) EPI704298 A/duck/Mongolia/141/2015 (A/H0N2) segment 3 (PA) 3740.6 0.000000e+00 2109/2151 (98%) EPI704429 A/duck/Mongolia/769/2015 (A/H4N6) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%) EPI704397 A/duck/Mongolia/520/2015 (A/H1N1) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%) EPI693697 A/duck/Mongolia/20/2015 (A/H3N8) segment 3 (PA) 3729.5 0.000000e+00 2107/2151 (97%) EPI704266 A/duck/Mongolia/101/2015 (A/H4N6) segment 3 (PA) 3718.4 0.000000e+00 2105/2151 (97%) EPI704290 A/duck/Mongolia/127/2015 (A/H4N6) segment 3 (PA) 3712.9 0.000000e+00 2104/2151 (97%) EPI866092 A/duck/Korea/ES2/2016(H5N6) (A/H5N6) segment 3 (PA) 3679.6 0.000000e+00 2098/2151 (97%) EPI895128 A/whooper swan/Korea/Gangjin 49_2/2016 (A/H5N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI895105 A/whooper swan/Korea/Gangjin 48/2016 (A/H5N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI895095 A/environment/Korea/W544/2016 (A/H5N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI895094 A/environment/Korea/W543/2016 (A/H5N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI895093 A/environment/Korea/W542/2016 (A/H5N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI895092 A/environment/Korea/W541/2016 (A/H5N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI866131 A/mandarin duck/Korea/WB246/2016(H5N6) (A/H5N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI866084 A/chicken/Korea/HN1/2016(H5N6) (A/H5N6) segment 3 (PA) 3668.6 0.000000e+00 2096/2151 (97%) EPI614278 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 3 (PA) 3646.4 0.000000e+00 2092/2151 (97%) EPI614284 A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 3 (PA) 3624.2 0.000000e+00 2088/2151 (97%) EPI377637 A/northern shoveler/Georgia/1/2010 (A/H2N3) segment 3 (PA) 3624.2 0.000000e+00 2088/2151 (97%) EPI614253 A/garganey/Republic of Georgia/1/2011 (A/H4N2) segment 3 (PA) 3618.7 0.000000e+00 2087/2151 (97%) EPI614286 A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 3 (PA) 3613.2 0.000000e+00 2086/2151 (96%) EPI614298 A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 3 (PA) 3607.6 0.000000e+00 2087/2153 (96%) EPI493025 A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 3 (PA) 3563.3 0.000000e+00 2077/2151 (96%) EPI692567 A/duck/Sichuan/S4202/2011 (A/H4N2) segment 3 (PA) 3557.8 0.000000e+00 2076/2151 (96%) EPI363462 A/duck/Guangxi/1157/2006 (A/H6N2) segment 3 (PA) 3546.7 0.000000e+00 2074/2151 (96%) EPI118295 A/duck/Jiang Xi/2374/2005 (A/H3N6) segment 3 (PA) 3546.7 0.000000e+00 2074/2151 (96%) EPI890596 A/greater white-fronted goose/Netherlands/1/2012 (A/H1N1) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI773764 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 3 (PA) 3535.6 0.000000e+00 2072/2151 (96%) EPI363470 A/duck/Guangxi/1248/2006 (A/H6N2) segment 3 (PA) 3535.6 0.000000e+00 2072/2151 (96%) EPI316751 A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 3 (PA) 3535.6 0.000000e+00 2072/2151 (96%) EPI296255 A/wild duck/Korea/SH60/2004 (A/H1N1) segment 3 (PA) 3535.6 0.000000e+00 2073/2152 (96%) EPI891127 A/mallard duck/Netherlands/13/2013 (A/H7N7) segment 3 (PA) 3530.1 0.000000e+00 2071/2151 (96%)
  19. Align Segment-ID Name Score E-Value Identity EPI959441 A/mute swan/Poland/64/2017 (A/H5N5) segment 2 (PB1) 4196.7 0.000000e+00 2274/2274 (100%) EPI942215 A/duck/Hubei/ZYSYG3/2015 (A/H6N2) segment 2 (PB1) 4030.5 0.000000e+00 2243/2274 (98%) EPI704534 A/duck/Mongolia/709/2015 (A/H10N7) segment 2 (PB1) 4030.5 0.000000e+00 2243/2274 (98%) EPI704526 A/duck/Mongolia/626/2015 (A/H10N7) segment 2 (PB1) 4030.5 0.000000e+00 2243/2274 (98%) EPI704509 A/duck/Mongolia/499/2015 (A/H10N7) segment 2 (PB1) 4030.5 0.000000e+00 2243/2274 (98%) EPI942217 A/duck/Hubei/ZYSYG8/2015 (A/H6N2) segment 2 (PB1) 4019.4 0.000000e+00 2241/2274 (98%) EPI942216 A/duck/Hubei/ZYSYG7/2015 (A/H6N2) segment 2 (PB1) 4019.4 0.000000e+00 2241/2274 (98%) EPI704396 A/duck/Mongolia/520/2015 (A/H1N1) segment 2 (PB1) 4019.4 0.000000e+00 2241/2274 (98%) EPI704501 A/duck/Mongolia/326/2015 (A/H10N3) segment 2 (PB1) 4002.8 0.000000e+00 2238/2274 (98%) EPI704479 A/duck/Mongolia/245/2015 (A/H10N3) segment 2 (PB1) 3997.3 0.000000e+00 2237/2274 (98%) EPI704297 A/duck/Mongolia/141/2015 (A/H0N2) segment 2 (PB1) 3997.3 0.000000e+00 2237/2274 (98%) EPI618043 A/mallard/Republic of Georgia/12/2011 (A/H10N4) segment 2 (PB1) 3991.7 0.000000e+00 2236/2274 (98%) EPI891424 A/mallard duck/Netherlands/26/2010 (A/H4N6) segment 2 (PB1) 3986.2 0.000000e+00 2236/2275 (98%) EPI617988 A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 2 (PB1) 3967.7 0.000000e+00 2231/2273 (98%) EPI617899 A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 2 (PB1) 3958.5 0.000000e+00 2230/2274 (98%) EPI617760 A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 2 (PB1) 3958.5 0.000000e+00 2230/2274 (98%) EPI891371 A/mallard duck/Netherlands/6/2013 (A/H3N8) segment 2 (PB1) 3953.0 0.000000e+00 2229/2274 (98%) EPI891426 A/mallard duck/Netherlands/26/2011 (A/H11N9) segment 2 (PB1) 3947.4 0.000000e+00 2228/2274 (97%) EPI618617 A/mallard/Sweden/133546/2011 (A/H10N4) segment 2 (PB1) 3947.4 0.000000e+00 2228/2274 (97%) EPI891301 A/greater white-fronted goose/Netherlands/2/2010 (A/H5N2) segment 2 (PB1) 3925.3 0.000000e+00 2224/2274 (97%) EPI514974 A/mallard/Sweden/80261/2008 (A/H4N9) segment 2 (PB1) 3914.2 0.000000e+00 2222/2274 (97%) EPI464920 A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 2 (PB1) 3914.2 0.000000e+00 2218/2268 (97%) EPI623944 A/chicken/England/26352/2015 (A/H7N7) segment 2 (PB1) 3908.6 0.000000e+00 2221/2274 (97%) EPI629347 A/chicken/NL-Barneveld/15004745-006-010/2015 (A/H7N7) segment 2 (PB1) 3897.6 0.000000e+00 2219/2274 (97%) EPI629339 A/Chicken/NL-Barneveld/15004745-001-005/2015 (A/H7N7) segment 2 (PB1) 3897.6 0.000000e+00 2219/2274 (97%) EPI540405 A/waterfowl/Bangladesh/12301/2013 (A/H6N7) segment 2 (PB1) 3877.2 0.000000e+00 2215/2274 (97%) EPI940659 A/duck/India/11CL01/2014 (A/H6N2) segment 2 (PB1) 3875.4 0.000000e+00 2215/2274 (97%) EPI372361 A/shoveler/Egypt/14879-NAMRU3/2006 (A/H7N1) segment 2 (PB1) 3875.4 0.000000e+00 2215/2274 (97%) EPI560057 A/mallard/Novomychalivka/2-23-12/2010 (A/H15N7) segment 2 (PB1) 3866.2 0.000000e+00 2212/2272 (97%) EPI182047 A/common eider/Netherlands/1/2006 (A/H3N8) segment 2 (PB1) 3858.8 0.000000e+00 2213/2275 (97%) EPI617954 A/Mediterranean gull/Republic of Georgia/1/2011 (A/H9N3) segment 2 (PB1) 3853.2 0.000000e+00 2211/2274 (97%) EPI617793 A/yellow-legged gull/Republic of Georgia/1/2012 (A/H0) segment 2 (PB1) 3853.2 0.000000e+00 2212/2275 (97%) EPI887466 A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI839726 A/chicken/France/150169a/2015 (A/H5N1) segment 2 (PB1) 3831.1 0.000000e+00 2207/2274 (97%) EPI704370 A/duck/Mongolia/211/2015 (A/H3N8) segment 2 (PB1) 3831.1 0.000000e+00 2207/2274 (97%) EPI704362 A/duck/Mongolia/208/2015 (A/H3N8) segment 2 (PB1) 3831.1 0.000000e+00 2207/2274 (97%) EPI704313 A/duck/Mongolia/167/2015 (A/H3N8) segment 2 (PB1) 3831.1 0.000000e+00 2207/2274 (97%) EPI693704 A/duck/Mongolia/83/2015 (A/H3N8) segment 2 (PB1) 3831.1 0.000000e+00 2207/2274 (97%) EPI693696 A/duck/Mongolia/20/2015 (A/H3N8) segment 2 (PB1) 3831.1 0.000000e+00 2207/2274 (97%) EPI464928 A/chicken/Italy/11VIR-7548/2011 (A/H5N2) segment 2 (PB1) 3831.1 0.000000e+00 2207/2274 (97%) EPI959417 A/domestic goose/Poland/33/2016 (A/H5N8) segment 2 (PB1) 3825.5 0.000000e+00 2207/2275 (97%) EPI617820 A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 2 (PB1) 3825.5 0.000000e+00 2206/2274 (97%) EPI891412 A/mallard duck/Netherlands/30/2010 (A/H3N8) segment 2 (PB1) 3797.8 0.000000e+00 2202/2275 (96%) EPI891408 A/mallard duck/Netherlands/67/2008 (A/H10N7) segment 2 (PB1) 3786.8 0.000000e+00 2199/2274 (96%) EPI891297 A/mallard duck/Netherlands/2/2015 (A/H7N7) segment 2 (PB1) 3786.8 0.000000e+00 2200/2275 (96%) EPI891469 A/mallard duck/Netherlands/1/2009 (A/H10N7) segment 2 (PB1) 3781.2 0.000000e+00 2198/2274 (96%) EPI345434 A/Larus argentatus/Belgium/02936cls9/2010 (A/H5N2) segment 2 (PB1) 3777.5 0.000000e+00 2193/2267 (96%) EPI891291 A/mallard duck/Netherlands/29/2009 (A/H11N9) segment 2 (PB1) 3775.7 0.000000e+00 2197/2274 (96%) EPI464944 A/chicken/Italy/12VIR-7785-67/2012 (A/H5N2) segment 2 (PB1) 3775.7 0.000000e+00 2197/2274 (96%) EPI464936 A/turkey/Italy/12VIR-6607-5/2012 (A/H5N2) segment 2 (PB1) 3775.7 0.000000e+00 2197/2274 (96%) EPI618937 A/mallard/Sweden/101165/2009 (A/H8N4) segment 2 (PB1) 3770.1 0.000000e+00 2196/2274 (96%) EPI618407 A/mallard/Sweden/101589/2009 (A/H11N9) segment 2 (PB1) 3770.1 0.000000e+00 2197/2275 (96%) EPI464952 A/turkey/Italy/12VIR-8036-2/2012 (A/H5N2) segment 2 (PB1) 3770.1 0.000000e+00 2196/2274 (96%) EPI891326 A/greater white-fronted goose/Netherlands/4/2011 (A/H1N1) segment 2 (PB1) 3764.6 0.000000e+00 2196/2275 (96%) EPI618651 A/mallard/Sweden/69794/2007 (A/H12N5) segment 2 (PB1) 3764.6 0.000000e+00 2195/2274 (96%) EPI618636 A/mallard/Sweden/68529/2007 (A/H12N5) segment 2 (PB1) 3764.6 0.000000e+00 2195/2274 (96%) EPI618622 A/mallard/Sweden/60069/2007 (A/H12N5) segment 2 (PB1) 3764.6 0.000000e+00 2195/2274 (96%) EPI618605 A/mallard/Sweden/107688/2009 (A/H10N1) segment 2 (PB1) 3764.6 0.000000e+00 2195/2274 (96%) EPI211183 A/mallard/Poland/16/09 (A/H7N7) segment 2 (PB1) 3764.6 0.000000e+00 2195/2274 (96%) EPI618014 A/mallard/Republic of Georgia/4/2010 (A/H1N1) segment 2 (PB1) 3753.5 0.000000e+00 2194/2275 (96%) EPI687185 A/chicken/Scotland/532/2016 (A/H5N1) segment 2 (PB1) 3749.8 0.000000e+00 2149/2209 (97%) EPI891374 A/mallard duck/Netherlands/51/2010 (A/H1N1) segment 2 (PB1) 3748.0 0.000000e+00 2192/2274 (96%) EPI475930 A/mallard/Iceland/1007/2011 (A/H3N6) segment 2 (PB1) 3742.4 0.000000e+00 2191/2274 (96%) EPI618448 A/mallard/Sweden/101993/2009 (A/H2N9) segment 2 (PB1) 3736.9 0.000000e+00 2191/2275 (96%) EPI457917 A/duck/Guangxi/GXd-4/2011 (A/H1N2) segment 2 (PB1) 3736.9 0.000000e+00 2190/2274 (96%) EPI378008 A/mallard/Netherlands/29/2010 (A/H2N3) segment 2 (PB1) 3736.9 0.000000e+00 2191/2275 (96%) EPI891447 A/mallard duck/Netherlands/7/2011 (A/H4N6) segment 2 (PB1) 3735.0 0.000000e+00 2190/2274 (96%) EPI387542 A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 2 (PB1) 3725.8 0.000000e+00 2189/2275 (96%) EPI891361 A/Eurasian wigeon/Netherlands/1/2010 (A/H5N2) segment 2 (PB1) 3720.3 0.000000e+00 2187/2274 (96%) EPI475944 A/great black-backed gull/Iceland/1110/2011 (A/H5N2) segment 2 (PB1) 3714.7 0.000000e+00 2187/2275 (96%) EPI457909 A/duck/Guangxi/GXd-1/2011 (A/H1N2) segment 2 (PB1) 3714.7 0.000000e+00 2186/2274 (96%) EPI367587 A/mallard/Czech Republic/15008-11K/2009 (A/H5N3) segment 2 (PB1) 3714.7 0.000000e+00 2187/2275 (96%) EPI485721 A/mallard/Sweden/49/2002 (A/H5N9) segment 2 (PB1) 3709.2 0.000000e+00 2186/2275 (96%) EPI439584 A/avian/Israel/289/2001 (A/H6N2) segment 2 (PB1) 3709.2 0.000000e+00 2185/2274 (96%) EPI236192 A/mallard/Sweden/49/2002 (A/H5N9) segment 2 (PB1) 3709.2 0.000000e+00 2186/2275 (96%) EPI433380 A/mallard/Czech Republic/15902-18K/2009 (A/H6N9) segment 2 (PB1) 3703.7 0.000000e+00 2185/2275 (96%) EPI367595 A/mallard/Czech Republic/15962-1T/2010 (A/H6N9) segment 2 (PB1) 3703.7 0.000000e+00 2185/2275 (96%) EPI284355 A/mallard/Czech Republic/15902-17K/2009 (A/H6N2) segment 2 (PB1) 3703.7 0.000000e+00 2185/2275 (96%) EPI891346 A/mallard duck/Netherlands/44/2011 (A/H7N1) segment 2 (PB1) 3698.1 0.000000e+00 2183/2274 (95%) EPI891336 A/greater white-fronted goose/Netherlands/6/2010 (A/H6N2) segment 2 (PB1) 3698.1 0.000000e+00 2184/2275 (96%) EPI891221 A/mallard duck/Netherlands/31/2012 (A/H7N1) segment 2 (PB1) 3698.1 0.000000e+00 2183/2274 (95%) EPI439586 A/avian/Israel/320/2001 (A/H6N2) segment 2 (PB1) 3694.4 0.000000e+00 2182/2274 (95%) EPI618214 A/mallard/Sweden/1689/2002 (A/H7N7) segment 2 (PB1) 3692.6 0.000000e+00 2183/2275 (95%) EPI618201 A/mallard/Sweden/1645/2002 (A/H7N7) segment 2 (PB1) 3692.6 0.000000e+00 2183/2275 (95%) EPI617059 A/mallard/Sweden/1671/2002 (A/H7N7) segment 2 (PB1) 3692.6 0.000000e+00 2183/2275 (95%) EPI891316 A/greater white-fronted goose/Netherlands/1/2011 (A/H6N8) segment 2 (PB1) 3687.0 0.000000e+00 2182/2275 (95%) EPI618139 A/mallard/Sweden/1690/2002 (A/H7N7) segment 2 (PB1) 3687.0 0.000000e+00 2182/2275 (95%) EPI372273 A/teal/Egypt/20431-NAMRU3/2003 (A/H1N2) segment 2 (PB1) 3687.0 0.000000e+00 2182/2275 (95%) EPI692423 A/duck/Guangxi/S1107/2010 (A/H4N6) segment 2 (PB1) 3681.5 0.000000e+00 2181/2275 (95%) EPI285821 A/avian/Egypt/920431/2006 (A/H9N2) segment 2 (PB1) 3681.5 0.000000e+00 2181/2275 (95%) EPI692454 A/duck/Guizhou/S1167/2010 (A/H4N6) segment 2 (PB1) 3676.0 0.000000e+00 2179/2274 (95%) EPI692430 A/duck/Guangxi/S1211/2010 (A/H4N6) segment 2 (PB1) 3676.0 0.000000e+00 2180/2275 (95%) EPI540165 A/duck/Bangladesh/1578/2009 (A/H11N3) segment 2 (PB1) 3676.0 0.000000e+00 2179/2274 (95%) EPI540157 A/duck/Bangladesh/1595/2010 (A/H11N3) segment 2 (PB1) 3676.0 0.000000e+00 2179/2274 (95%) EPI336987 A/duck/Zhejiang/2245/2011 (A/H5N1) segment 2 (PB1) 3676.0 0.000000e+00 2179/2274 (95%) EPI229961 A/duck/France/05057b/2005 (A/H5N2) segment 2 (PB1) 3676.0 0.000000e+00 2181/2276 (95%) EPI173879 A/goose/Italy/296426/2003 (A/H1N1) segment 2 (PB1) 3676.0 0.000000e+00 2180/2275 (95%) EPI169291 A/duck/France/05057b/2005 (A/H5N2) segment 2 (PB1) 3676.0 0.000000e+00 2181/2276 (95%) EPI167837 A/goose/Italy/296426/2003 (A/H1N1) segment 2 (PB1) 3676.0 0.000000e+00 2180/2275 (95%) EPI891458 A/greater white-fronted goose/Netherlands/1/2007 (A/H1N1) segment 2 (PB1) 3670.4 0.000000e+00 2179/2275 (95%)
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