niman Posted April 13, 2016 Report Share Posted April 13, 2016 Central Research Institute of Epidemiology has released partial Zika sequence from urine collected Mar 22, 2016, Dominican_Rep-Rus-2-2016. Link to comment Share on other sites More sharing options...
niman Posted April 13, 2016 Author Report Share Posted April 13, 2016 LOCUS KU978616 489 bp RNA linear VRL 09-APR-2016 DEFINITION Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds. ACCESSION KU978616 VERSION KU978616.1 GI:1013874324 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 489) AUTHORS Karan,L.S., Fedorova,M.V., Grigorieva,Y.E., Zhurenkova,O.B., Koval,M.V., Voldokhina,A.V. and Shipulin,G.A. TITLE Direct Submission JOURNAL Submitted (25-MAR-2016) Central Research Institute of Epidemiology, Novogireevskaya Str., 3A, Moscow 111123, Russia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..489 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Dominican_Rep-Rus-2-2016" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="Russia" /collection_date="22-Mar-2016" /note="genotype: Asian" CDS <1..>489 /note="NS2a-NS2b" /codon_start=1 /product="polyprotein" /protein_id="AMU04544.1" /db_xref="GI:1013874325" /translation="LLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMVVPRTDN ITLAILAALTPLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVR LVDPINVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLI VSY" ORIGIN 1 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg 61 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca 121 cgcactgata acatcacctt ggcaatcctg gctgctctga caccactggc ccggggcaca 181 ctgcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctctg 241 aagggaaaag gcagtgtgaa gaagaactta ccatttgtca tggccctggg actaaccgct 301 gtaaggctgg tcgaccccat caacgtggtg ggactgctgt tgctcacaag gagtgggaag 361 cggagctggc cccctagcga agtactcaca gctgttggcc tgatatgcgc attggctgga 421 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt 481 gtcagttachttp://www.ncbi.nlm.nih.gov/nuccore/KU978616.1 Link to comment Share on other sites More sharing options...
niman Posted April 13, 2016 Author Report Share Posted April 13, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds883883100%0.0100%KU978616.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds877877100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds877877100%0.099%KU955589.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome877877100%0.099%KU926310.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds877877100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome877877100%0.099%KU820899.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds877877100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome877877100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome877877100%0.099%KU527068.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome877877100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds877877100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds877877100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds877877100%0.099%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds877877100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds877877100%0.099%KJ776791.1Select seq gb|KU509998.2|Zika virus strain Haiti/1225/2014, complete genome874874100%0.099%KU509998.2Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds874874100%0.099%KU991811.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome874874100%0.099%KU940228.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome874874100%0.099%KU926309.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome874874100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome874874100%0.099%KU853012.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds874874100%0.099%KU729217.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome874874100%0.099%KU744693.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds874874100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds874874100%0.099%KU501216.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds874874100%0.099%KU365778.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome874874100%0.099%KU321639.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome868868100%0.099%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome868868100%0.099%KU870645.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds868868100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds868868100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds868868100%0.099%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome868868100%0.099%KU497555.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds865865100%0.099%KU955590.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome865865100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome865865100%0.099%KU922923.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds865865100%0.099%KU820897.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds865865100%0.099%KU647676.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome859859100%0.099%KU681081.3Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds85785799%0.099%KU740199.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome841841100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds841841100%0.098%JN860885.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome838838100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds838838100%0.098%KF993678.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds81481493%0.099%KU872850.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome803803100%0.096%KU940227.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds792792100%0.096%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds765765100%0.095%HQ234499.1 Link to comment Share on other sites More sharing options...
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