niman Posted April 15, 2016 Report Share Posted April 15, 2016 (edited) University of Florida has released two additional Zika sequences from December 2014 Haiti isolates. These two partial sequences match each other and the full 2014 Haiti sequence. All three have A9327G, which is also present in the 2016 Haiti sequence. This polymorphism is found in earlier sequences from the Asian lineage as well as the French Polynesia sequence and multiple sequences from the 2014 Easter Island outbreak. Edited April 15, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted April 15, 2016 Author Report Share Posted April 15, 2016 LOCUS KX059013 1024 bp cRNA linear VRL 12-APR-2016 DEFINITION Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds. ACCESSION KX059013 VERSION KX059013.1 GI:1016884666 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1024) AUTHORS Lednicky,J.A., Morris,J.G. Jr., Beau De Rochars,V.M., Elbadry,M.A., Okech,B.A. and Loeb,J.C. TITLE Direct Submission JOURNAL Submitted (12-APR-2016) Environmental and Global Health, University of Florida - Gainesville, 1225 Center Drive, Room 4155, Gainesville, FL 32610, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1024 /organism="Zika virus" /mol_type="viral cRNA" /isolate="Haiti/1227/2014" /isolation_source="plasma" /host="Homo sapiens" /db_xref="taxon:64320" /country="Haiti" /collection_date="15-Dec-2014" /identified_by="John Lednicky" CDS <1..>1024 /codon_start=3 /product="NS5" /protein_id="AMX81920.1" /db_xref="GI:1016884667" /translation="EFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGV EGLGLQRLGYVLEEMSRIPGGRMYADDTAGWDTRISRFDLENEALITNQMEKGHRALA LAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRN MEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRF LNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHHFNKLHLKDGRSIVVPCRHQDELIGRA RVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSSVPVDWVPTGRTTWS IHGKGE" ORIGIN 1 gggaatttgg aaaggccaag ggcagccgcg ccatctggta tatgtggcta ggggctagat 61 ttctagagtt cgaagccctt ggattcttga acgaggatca ctggatgggg agagagaact 121 caggaggtgg tgttgaaggg ctgggattac aaagactcgg atatgtccta gaagagatga 181 gtcgcatacc aggaggaagg atgtatgcag atgacactgc tggctgggac acccgcatca 241 gcaggtttga tctggagaat gaagctctaa tcaccaacca aatggagaaa gggcacaggg 301 ccttggcatt ggccataatc aagtacacat accaaaacaa agtggtaaag gtccttagac 361 cagctgaaaa agggaagaca gttatggaca ttatttcgag acaagaccaa agggggagcg 421 gacaagttgt cacttacgct cttaacacat ttaccaacct agtggtgcaa ctcattcgga 481 atatggaggc tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg aggtcagaga 541 aagtgaccaa ctggttgcag agcaacggat gggataggct caaacgaatg gcagtcagtg 601 gagatgattg cgttgtgaag ccaattgatg ataggtttgc acatgccctc aggttcttga 661 atgatatggg aaaagttagg aaggacacac aagagtggaa accctcaact ggatgggaca 721 actgggaaga agttccgttt tgctcccacc acttcaacaa gctccatctc aaggacggga 781 ggtccattgt ggttccctgc cgccaccaag atgaactgat tggccgggcc cgcgtctctc 841 caggggcggg atggagcatc cgggagactg cttgcctagc aaaatcatat gcgcaaatgt 901 ggcagctcct ttatttccac agaagggacc tccgactgat ggccaatgcc atttgttcat 961 ctgtgccagt tgactgggtt ccaactggga gaactacctg gtcaatccat ggaaagggag 1021 aatghttp://www.ncbi.nlm.nih.gov/nuccore/KX059013.1 Link to comment Share on other sites More sharing options...
niman Posted April 15, 2016 Author Report Share Posted April 15, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU509998.2|Zika virus strain Haiti/1225/2014, complete genome18471847100%0.0100%KU509998.2Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds18471847100%0.0100%KJ776791.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome18421842100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds18421842100%0.099%KU647676.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome18381838100%0.099%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome18381838100%0.099%KU926310.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds18381838100%0.099%KU729217.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds18381838100%0.099%KU820897.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome18381838100%0.099%KU321639.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds18331833100%0.099%KU991811.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome18331833100%0.099%KU926309.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome18331833100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome18331833100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome18331833100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome18331833100%0.099%KU853012.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome18331833100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome18331833100%0.099%KU527068.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds18331833100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds18331833100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome18331833100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds18331833100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds18331833100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds18331833100%0.099%KU365777.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome18291829100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome18291829100%0.099%KU940224.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds18291829100%0.099%KU820898.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds18291829100%0.099%KU729218.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds18291829100%0.099%KU312312.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds18241824100%0.099%KU963796.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds18241824100%0.099%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds18241824100%0.099%KU955589.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds18241824100%0.099%KU740184.2Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome18241824100%0.099%KU820899.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds18241824100%0.099%KU761564.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome18241824100%0.099%KU744693.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds18241824100%0.099%KU365778.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds18201820100%0.099%KF993678.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds18061806100%0.099%KU866423.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome18061806100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome17751775100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds17751775100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds17751775100%0.098%EU545988.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds1761176195%0.0100%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds1757175795%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds1755175595%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds1754175495%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds1754175495%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds1754175495%0.099%KM078933.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome17521752100%0.098%KU681082.3Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds1752175295%0.099%KM078929.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds1750175096%0.099%KU179098.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds16171617100%0.095%HQ234499.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1611161187%0.0100%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1429142977%0.0100%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds1391139177%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds1355135577%0.098%KM851038.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds1353135373%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1346134673%0.099%KU556802.1 Link to comment Share on other sites More sharing options...
niman Posted April 15, 2016 Author Report Share Posted April 15, 2016 LOCUS KX059014 1024 bp cRNA linear VRL 12-APR-2016 DEFINITION Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds. ACCESSION KX059014 VERSION KX059014.1 GI:1016884668 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 1024) AUTHORS Lednicky,J.A., Morris,J.G. Jr., Beau De Rochars,V.M., Elbadry,M.A., Okech,B.A. and Loeb,J.C. TITLE Direct Submission JOURNAL Submitted (12-APR-2016) Environmental and Global Health, University of Florida - Gainesville, 1225 Center Drive, Room 4155, Gainesville, FL 32610, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..1024 /organism="Zika virus" /mol_type="viral cRNA" /isolate="Haiti/1230/2014" /isolation_source="plasma" /host="Homo sapiens" /db_xref="taxon:64320" /country="Haiti" /collection_date="17-Dec-2014" /identified_by="John Lednicky" CDS <1..>1024 /codon_start=3 /product="NS5" /protein_id="AMX81921.1" /db_xref="GI:1016884669" /translation="EFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGV EGLGLQRLGYVLEEMSRIPGGRMYADDTAGWDTRISRFDLENEALITNQMEKGHRALA LAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRN MEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRF LNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHHFNKLHLKDGRSIVVPCRHQDELIGRA RVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSSVPVDWVPTGRTTWS IHGKGE" ORIGIN 1 gggaatttgg aaaggccaag ggcagccgcg ccatctggta tatgtggcta ggggctagat 61 ttctagagtt cgaagccctt ggattcttga acgaggatca ctggatgggg agagagaact 121 caggaggtgg tgttgaaggg ctgggattac aaagactcgg atatgtccta gaagagatga 181 gtcgcatacc aggaggaagg atgtatgcag atgacactgc tggctgggac acccgcatca 241 gcaggtttga tctggagaat gaagctctaa tcaccaacca aatggagaaa gggcacaggg 301 ccttggcatt ggccataatc aagtacacat accaaaacaa agtggtaaag gtccttagac 361 cagctgaaaa agggaagaca gttatggaca ttatttcgag acaagaccaa agggggagcg 421 gacaagttgt cacttacgct cttaacacat ttaccaacct agtggtgcaa ctcattcgga 481 atatggaggc tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg aggtcagaga 541 aagtgaccaa ctggttgcag agcaacggat gggataggct caaacgaatg gcagtcagtg 601 gagatgattg cgttgtgaag ccaattgatg ataggtttgc acatgccctc aggttcttga 661 atgatatggg aaaagttagg aaggacacac aagagtggaa accctcaact ggatgggaca 721 actgggaaga agttccgttt tgctcccacc acttcaacaa gctccatctc aaggacggga 781 ggtccattgt ggttccctgc cgccaccaag atgaactgat tggccgggcc cgcgtctctc 841 caggggcggg atggagcatc cgggagactg cttgcctagc aaaatcatat gcgcaaatgt 901 ggcagctcct ttatttccac agaagggacc tccgactgat ggccaatgcc atttgttcat 961 ctgtgccagt tgactgggtt ccaactggga gaactacctg gtcaatccat ggaaagggag 1021 aatghttp://www.ncbi.nlm.nih.gov/nuccore/KX059014.1 Link to comment Share on other sites More sharing options...
niman Posted April 15, 2016 Author Report Share Posted April 15, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU509998.2|Zika virus strain Haiti/1225/2014, complete genome18471847100%0.0100%KU509998.2Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds18471847100%0.0100%KJ776791.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome18421842100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds18421842100%0.099%KU647676.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome18381838100%0.099%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome18381838100%0.099%KU926310.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds18381838100%0.099%KU729217.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds18381838100%0.099%KU820897.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome18381838100%0.099%KU321639.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds18331833100%0.099%KU991811.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome18331833100%0.099%KU926309.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome18331833100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome18331833100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome18331833100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome18331833100%0.099%KU853012.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome18331833100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome18331833100%0.099%KU527068.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds18331833100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds18331833100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome18331833100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds18331833100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds18331833100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds18331833100%0.099%KU365777.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome18291829100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome18291829100%0.099%KU940224.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds18291829100%0.099%KU820898.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds18291829100%0.099%KU729218.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds18291829100%0.099%KU312312.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds18241824100%0.099%KU963796.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds18241824100%0.099%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds18241824100%0.099%KU955589.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds18241824100%0.099%KU740184.2Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome18241824100%0.099%KU820899.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds18241824100%0.099%KU761564.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome18241824100%0.099%KU744693.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds18241824100%0.099%KU365778.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds18201820100%0.099%KF993678.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds18061806100%0.099%KU866423.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome18061806100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome17751775100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds17751775100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds17751775100%0.098%EU545988.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds1761176195%0.0100%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds1757175795%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds1755175595%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds1754175495%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds1754175495%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds1754175495%0.099%KM078933.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome17521752100%0.098%KU681082.3Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds1752175295%0.099%KM078929.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds1750175096%0.099%KU179098.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds16171617100%0.095%HQ234499.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1611161187%0.0100%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1429142977%0.0100%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds1391139177%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds1355135577%0.098%KM851038.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds1353135373%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1346134673%0.099%KU556802.1 Link to comment Share on other sites More sharing options...
niman Posted April 20, 2016 Author Report Share Posted April 20, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds18921892100%0.0100%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds18921892100%0.0100%KX059013.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome18921892100%0.0100%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome18921892100%0.0100%KU509998.3Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds18921892100%0.0100%KJ776791.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome18861886100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds18861886100%0.099%KU647676.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome18811881100%0.099%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome18811881100%0.099%KU926310.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds18811881100%0.099%KU729217.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds18811881100%0.099%KU820897.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome18811881100%0.099%KU321639.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds18751875100%0.099%KU991811.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome18751875100%0.099%KU926309.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome18751875100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome18751875100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome18751875100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome18751875100%0.099%KU853012.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome18751875100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome18751875100%0.099%KU527068.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds18751875100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds18751875100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome18751875100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds18751875100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds18751875100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds18751875100%0.099%KU365777.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome18691869100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome18691869100%0.099%KU940224.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds18691869100%0.099%KU820898.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds18691869100%0.099%KU729218.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds18691869100%0.099%KU312312.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds18641864100%0.099%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds18641864100%0.099%KU963796.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds18641864100%0.099%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds18641864100%0.099%KU955589.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds18641864100%0.099%KU740184.2Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome18641864100%0.099%KU820899.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds18641864100%0.099%KU761564.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome18641864100%0.099%KU744693.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds18641864100%0.099%KU365778.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds18581858100%0.099%KF993678.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds18421842100%0.099%KU866423.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome18421842100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome18031803100%0.098%KU955593.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds1803180395%0.0100%KM078936.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds18031803100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds18031803100%0.098%EU545988.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds1799179995%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds1797179795%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds1794179495%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds1794179495%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds1794179495%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds1792179295%0.099%KM078929.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds1786178696%0.099%KU179098.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome17751775100%0.098%KU681082.3Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1650165087%0.0100%KJ873160.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds16091609100%0.095%HQ234499.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1463146377%0.0100%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds1419141977%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds1384138473%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1378137873%0.099%KU556802.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds1375137577%0.098%KM851038.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds1267126767%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds1258125867%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds1254125467%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds1249124966%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds1245124566%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds1242124265%0.099%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds1238123865%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds1238123866%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds1234123465%0.099%KU232295.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1227122799%0.088%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1227122799%0.088%KU955594.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1227122799%0.088%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1227122799%0.088%LC002520.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds1227122799%0.088%HQ234498.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1227122799%0.088%AY632535.2Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds1223122364%0.099%KU232288.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1223122399%0.088%KF268949.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1223122399%0.088%AF013415.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds12211221100%0.088%DQ859059.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds1219121964%0.099%KU232289.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1218121899%0.088%KU955595.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1218121899%0.088%KU955591.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds1216121664%0.099%KU232299.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1212121299%0.088%KU955592.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds1210121065%0.099%KU232291.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1206120699%0.088%KF383116.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds1205120599%0.088%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1205120599%0.088%KF383119.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1192119299%0.088%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1192119299%0.088%KF268948.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds1190119099%0.088%HQ234501.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1182118299%0.088%KF383118.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1179117999%0.087%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds1179117999%0.087%HQ234500.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1173117399%0.087%KF383117.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1123112399%0.087%KF383115.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds99899852%0.0100%KU867812.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence84384399%0.082%KF383120.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds84184169%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds84184169%0.088%KF383086.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds80880869%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds80280269%0.087%KF383085.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds79779769%0.087%KF383106.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds79179169%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds79179169%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds79179169%0.087%KF383088.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds78578569%0.087%KF383087.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds76976969%0.086%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds76376369%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds76376369%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds75875869%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds75275269%0.086%KF383098.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds71371369%0.085%KF383113.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds55555569%7e-15781%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds55355369%3e-15681%KF383093.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds54254269%5e-15381%KF383091.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome475121464%6e-133100%KU940227.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds43143123%1e-11998%KF258813.1 Link to comment Share on other sites More sharing options...
niman Posted April 20, 2016 Author Report Share Posted April 20, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds18031803100%0.0100%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds18031803100%0.0100%KX059013.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome18031803100%0.0100%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome18031803100%0.0100%KU509998.3Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds18031803100%0.0100%KM078936.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds18031803100%0.0100%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds17991799100%0.099%KM078961.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome17971797100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds17971797100%0.099%KU647676.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds17971797100%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds17941794100%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds17941794100%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds17941794100%0.099%KM078933.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome17921792100%0.099%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome17921792100%0.099%KU926310.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds17921792100%0.099%KU729217.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds17921792100%0.099%KU820897.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome17921792100%0.099%KU321639.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds17921792100%0.099%KM078929.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds17861786100%0.099%KU991811.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome17861786100%0.099%KU926309.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome17861786100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome17861786100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome17861786100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome17861786100%0.099%KU853012.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome17861786100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome17861786100%0.099%KU527068.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds17861786100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds17861786100%0.099%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome17861786100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds17861786100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds17861786100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds17861786100%0.099%KU365777.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome17811781100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome17811781100%0.099%KU940224.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds17811781100%0.099%KU820898.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds17811781100%0.099%KU729218.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds17811781100%0.099%KU312312.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds17751775100%0.099%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds17751775100%0.099%KU963796.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds17751775100%0.099%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds17751775100%0.099%KU955589.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds17751775100%0.099%KU740184.2Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome17751775100%0.099%KU820899.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds17751775100%0.099%KU761564.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome17751775100%0.099%KU744693.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds17751775100%0.099%KU365778.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds17701770100%0.099%KF993678.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds17531753100%0.099%KU866423.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome17531753100%0.099%KU681081.3Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds1746174698%0.099%KU179098.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome17141714100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds17141714100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds17141714100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome16871687100%0.098%KU681082.3Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1650165091%0.0100%KJ873160.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds15201520100%0.095%HQ234499.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1463146381%0.0100%KJ873161.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds1384138477%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1378137876%0.099%KU556802.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds1375137578%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds1330133078%0.098%KM851038.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds1267126770%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds1258125870%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds1254125470%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds1249124969%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds1245124569%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds1242124269%0.099%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds1238123868%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds1238123869%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds1234123468%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds1223122368%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds1219121967%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds1216121667%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds1210121068%0.099%KU232291.1 Link to comment Share on other sites More sharing options...
niman Posted April 20, 2016 Author Report Share Posted April 20, 2016 Zika virus NS5 gene, partial cds.PopSet: 1016884666GenBank FASTASequences in this data setKX059014.1Zika virus isolate Haiti/1230/2014 NS5 gene, partial cdsKX059013.1Zika virus isolate Haiti/1227/2014 NS5 gene, partial cdshttp://www.ncbi.nlm.nih.gov/popset?DbFrom=nuccore&Cmd=Link&LinkName=nuccore_popset&IdsFromResult=1016884668 Link to comment Share on other sites More sharing options...
Recommended Posts
Please sign in to comment
You will be able to leave a comment after signing in
Sign In Now