Full 2015 Zika Panama Sequences

[niman]

J Craig Venter Institute has released 3 full 2015 Zika sequences from Panama which match early sequences from Colombia / Martinque  and recent Mexico isolates.

[niman]

LOCUS       KX156774               10672 bp ss-RNA     linear   VRL 05-MAY-2016
DEFINITION  Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015,
            complete genome.
ACCESSION   KX156774
VERSION     KX156774.1  GI:1024286099
DBLINK      BioProject: PRJNA314889
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10672)
  AUTHORS   Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N.,
            Stockwell,T., Shrivastava,S., Amedeo,P., Williams,M., Hu,L.,
            Das,S.R. and Rashid,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-APR-2016) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
COMMENT     This work was supported by the National Institute of Allergy and
            Infectious Diseases (NIAID), Genome Center for Infectious Diseases
            (GCID) program.
            
            ##Genome-Assembly-Data-START##
            Current Finishing Status :: Finished
            Assembly Method          :: clc_ref_assemble_long v. 3.22.55705
            Genome Coverage          :: 248.4x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10672
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /strain="ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015"
                     /host="Homo sapiens"
                     /db_xref="BEI:NR-50219"
                     /db_xref="taxon:64320"
                     /lab_host="Cercopithecus aethiops kidney epithelial cells"
                     /country="Panama"
                     /collection_date="18-Dec-2015"
                     /note="passage details: V1-V3"
     misc_feature    1..10672
                     /db_xref="ViPR:ZIKVBE_ZIKVBEI_00008.MAIN"
     gene            72..10343
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
     CDS             72..10343
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="ANB66182.1"
                     /db_xref="GI:1024286100"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPIAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT
                     PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST
                     QVRYLGEEGSTPGVL"
     mat_peptide     72..383
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="capsid protein C"
                     /note="core protein"
     mat_peptide     438..716
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="protein pr"
     mat_peptide     717..941
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="small envelope protein M"
                     /note="membrane glycoprotein M"
     mat_peptide     942..2453
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="envelope protein E"
     mat_peptide     2454..3509
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="nonstructural protein NS1"
     mat_peptide     3510..4187
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="nonstructural protein NS2A"
     mat_peptide     4188..4577
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="nonstructural protein NS2B"
     mat_peptide     4578..6428
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="nonstructural protein NS3"
     mat_peptide     6429..6809
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="nonstructural protein NS4A"
     mat_peptide     6810..6878
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="protein 2K"
     mat_peptide     6879..7631
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="nonstructural protein NS4B"
     mat_peptide     7632..10340
                     /gene="GP1"
                     /locus_tag="A2G93_63484gpGP1"
                     /product="RNA-dependent RNA polymerase NS5"
                     /note="nonstructural protein 5"
ORIGIN      
        1 gaatttgaag cgaatgctaa caacagtatc aacaggtttt attttggatt tggaaacgag
       61 agtttctggt catgaaaaac ccaaaaaaga aatccggagg attccggatt gtcaatatgc
      121 taaaacgcgg agtagcccgt gtgagcccct ttgggggctt gaagaggctg ccagccggac
      181 ttctgctggg tcatgggccc atcaggatgg tcttggcgat tctagccttt ttgagattca
      241 cggcaatcaa gccatcactg ggtctcatca atagatgggg ttcagtgggg aaaaaagagg
      301 ctatggaaat aataaagaag ttcaagaaag atctggctgc catgctgaga ataatcaatg
      361 ctaggaagga gaagaagaga cgaggcgcag aaactagtgt cggaattgtt ggcctcctgc
      421 tgaccacagc tatggcagcg gaggtcacta gacgtgggag tgcatactat atgtacttgg
      481 acagaaacga tgctggggag gccatatctt ttccaaccac attggggatg aataagtgtt
      541 atatacagat catggatctt ggacacatgt gtgatgccac catgagctat gaatgcccta
      601 tgctggatga gggggtggaa ccagatgacg tcgattgttg gtgcaacacg acgtcaactt
      661 gggttgtgta cggaacctgc catcacaaaa aaggtgaagc acggagatct agaagagccg
      721 tgacgctccc ctcccattcc actaggaagc tgcaaacgcg gtcgcaaacc tggttggaat
      781 caagagaata cacaaagcac ttgattagag tcgaaaattg gatattcagg aaccctggtt
      841 tcgctttagc agcagctgcc atcgcttggc ttttgggaag ctcaacgagc caaaaagtca
      901 tatacttggt catgatactg ctgattgccc cggcatacag catcaggtgc ataggagtca
      961 gcaataggga ctttgtggaa ggtatgtcag gtgggacttg ggttgatgtc gtcttggaac
     1021 atggaggttg tgtcaccgta atggcacagg acaaaccgac tgtcgacata gagctggtta
     1081 caacaacagt cagcaacatg gcggaggtaa gatcctactg ctatgaggca tcaatatcag
     1141 acatggcttc ggacagccgc tgcccaacac aaggtgaagc ctaccttgac aagcaatcag
     1201 acactcaata tgtctgcaaa agaacgttag tggacagagg ctggggaaat ggatgtggac
     1261 tttttggcaa agggagcctg gtgacatgcg ctaagtttgc atgctccaag aaaatgaccg
     1321 ggaagagcat ccagccagag aatctggagt accggataat gttgtcagtt catggctccc
     1381 agcacagtgg gatgatcgtt aatgacacag gacatgaaac tgatgagaat agagcgaagg
     1441 ttgagataac gcccaattca ccaagagccg aagccaccct ggggggtttt ggaagcctag
     1501 gacttgattg tgaaccgagg acaggccttg acttttcaga tttgtattac ttgactatga
     1561 ataacaagca ctggttggtt cacaaggagt ggttccacga cattccatta ccttggcacg
     1621 ctggggcaga caccggaact ccacactgga acaacaaaga agcactggta gagttcaagg
     1681 acgcacatgc caaaaggcaa actgtcgtgg ttctagggag tcaagaagga gcagttcaca
     1741 cggcccttgc tggagctctg gaggctgaga tggatggtgc aaagggaagg ctgtcctctg
     1801 gccacttgaa atgtcgcctg aaaatggata aacttagatt gaagggcgtg tcatactcct
     1861 tgtgtaccgc agcgttcaca ttcaccaaga tcccggctga aacactgcac gggacagtca
     1921 cagtggaggt acagtacgca gggacagatg gaccttgcaa ggttccagct cagatggcgg
     1981 tggacatgca aactctgacc ccagttggga ggttgataac cgctaacccc gtaatcactg
     2041 aaagcactga gaactctaag atgatgctgg aacttgatcc accatttggg gactcttaca
     2101 ttgtcatagg agtcggggag aagaagatca cccaccactg gcacaggagt ggcagcacca
     2161 ttggaaaagc atttgaagcc actgtgagag gtgccaagag aatggcagtc ttgggagaca
     2221 cagcctggga ctttggatca gttggaggcg ctctcaactc attgggcaag ggcatccatc
     2281 aaatttttgg agcagctttc aaatcattgt ttggaggaat gtcctggttc tcacaaattc
     2341 tcattggaac gttgctgatg tggttgggtc tgaacacaaa gaatggatct atttccctta
     2401 tgtgcttggc cttaggggga gtgttgatct tcttatccac agccgtctct gctgatgtgg
     2461 ggtgctcggt ggacttctca aagaaggaga cgagatgtgg tacaggggtg ttcgtctaca
     2521 acgacgttga agcctggagg gacaggtaca agtaccatcc tgactccccc cgtagattgg
     2581 cagcagcagt caagcaagcc tgggaagatg gtatctgcgg gatctcctct gtttcaagaa
     2641 tggaaaacat catgtggaga tcagtagaag gggagctcaa cgcaatcctg gaagagaatg
     2701 gagttcaact gacggtcgtt gtgggatctg taaaaaaccc catgtggaga ggtccacaga
     2761 gattgcccgt gcctgtgaac gagctgcccc acggctggaa ggcttggggg aaatcgtact
     2821 tcgtcagagc agcaaagaca aataacagct ttgtcgtgga tggtgacaca ctgaaggaat
     2881 gcccactcaa acatagagca tggaacagct ttcttgtgga ggatcatggg ttcggggtat
     2941 ttcacactag tgtctggctc aaggttagag aagattattc attagagtgt gatccagccg
     3001 ttattggaac agctgttaag ggaaaggagg ctgtacacag tgatctaggc tactggattg
     3061 agagtgagaa gaatgacaca tggaggctga agagggccca tctgatcgag atgaaaacat
     3121 gtgaatggcc aaagtcccac acattgtgga cagatggaat agaagagagt gatctgatca
     3181 tacccaagtc tttagctggg ccactcagcc atcacaatac cagagagggc tacaggaccc
     3241 aaatgaaagg gccatggcac agtgaagagc ttgaaattcg gtttgaggaa tgcccaggca
     3301 ctaaggtcca cgtggaggaa acatgtggaa caagaggacc atctctgaga tcaaccactg
     3361 caagcggaag ggtgatcgag gaatggtgct gcagggagtg cacaatgccc ccactgtcgt
     3421 tctgggctaa agatggctgt tggtatggaa tggagataag gcccaggaaa gaaccagaaa
     3481 gcaacttagt aaggtcaatg gtgactgcag gatcaactga tcacatggat cacttctccc
     3541 ttggagtgct tgtgattctg ctcatggtgc aggaagggct gaagaagaga atgaccacaa
     3601 agatcatcat aagcacatca atggcagtgc tggtagctat gatcctggga ggattttcaa
     3661 tgagtgacct ggctaagctt gcaatcttga tgggtgccac cttcgcggaa atgaacactg
     3721 gaggagatgt ggctcatctg gcgctgatag cagcattcaa agtcagacca gcgttgctgg
     3781 tatctttcat cttcagagct aattggacac cccgtgaaag catgctgctg gccttggcct
     3841 cgtgtctttt gcaaactgcg atctccgcct tggagggcga cctgatggtt ctcatcaatg
     3901 gttttgcttt ggcctggttg gcaatacgag cgatggttgt tccacgcact gacaacatca
     3961 ccttggcaat cctggctgct ctgacaccac tggcccgggg cacactgctt gtggcgtgga
     4021 gagcaggcct tgctacttgc ggggggttta tgctcctctc tctgaaggga aaaggcagtg
     4081 tgaagaagaa cttaccattt gtcatggccc tgggactaac cgctgtgagg ctggtcgacc
     4141 ccatcaacgt ggtgggactg ctgttgctca caaggagtgg gaagcggagc tggcccccta
     4201 gcgaagtact cacagctgtt ggcctgatat gcgcattggc tggagggttc gccaaggcag
     4261 atatagagat ggctgggccc atagccgcgg tcggtctgct aattgtcagt tacgtggtct
     4321 caggaaagag tgtggacatg tacattgaaa gagcaggtga catcacatgg gaaaaagatg
     4381 cggaagtcac tggaaacagt ccccggctcg atgtggcgct agatgagagt ggtgatttct
     4441 ccctggtgga ggatgacggt ccccccatga gagagatcat actcaaggtg gtcctgatga
     4501 ccatctgtgg catgaaccca atagccatac cctttgcagc tggagcgtgg tacgtatacg
     4561 tgaagactgg aaaaaggagt ggtgctctat gggatgtgcc tgctcccaag gaagtaaaaa
     4621 agggggagac cacagatgga gtgtacagag taatgactcg tagactgcta ggttcaacac
     4681 aagttggagt gggagttatg caagaggggg tctttcacac tatgtggcac gtcacaaaag
     4741 gatccgcgct gagaagcggt gaagggagac ttgatccata ctggggagat gtcaagcagg
     4801 atctggtgtc atactgtggt ccatggaagc tagatgccgc ctgggacggg cacagcgagg
     4861 tgcagctctt ggccgtgccc cccggagaga gagcgaggaa catccagact ctgcccggaa
     4921 tatttaagac aaaggatggg gacattggag cggttgcgct ggattaccca gcaggaactt
     4981 caggatctcc aatcctagac aagtgtggga gagtgatagg actttatggc aatggggtcg
     5041 tgatcaaaaa tgggagttat gttagtgcca tcacccaagg gaggagggag gaagagactc
     5101 ctgttgagtg cttcgagcct tcgatgctga agaagaagca gctaactgtc ttagacttgc
     5161 atcctggagc tgggaaaacc aggagagttc ttcctgaaat agtccgtgaa gccataaaaa
     5221 caagactccg tactgtgatc ttagctccaa ccagggttgt cgctgctgaa atggaggaag
     5281 cccttagagg gcttccagtg cgttatatga caacagcagt caatgtcacc cactctggaa
     5341 cagaaatcgt cgacttaatg tgccatgcca ccttcacttc acgtctacta cagccaatca
     5401 gagtccccaa ctataatctg tatattatgg atgaggccca cttcacagat ccctcaagta
     5461 tagcagcaag aggatacatt tcaacaaggg ttgagatggg cgaggcggct gccatcttca
     5521 tgaccgccac gccaccagga acccgtgacg catttccgga ctccaactca ccaattatgg
     5581 acaccgaagt ggaagtccca gagagagcct ggagctcagg ctttgattgg gtgacggatc
     5641 attctggaaa aacagtttgg tttgttccaa gcgtgaggaa cggcaatgag atcgcagctt
     5701 gtctgacaaa ggctggaaaa cgggtcatac agctcagcag aaagactttt gagacagagt
     5761 tccagaaaac aaaacatcaa gagtgggact ttgtcgtgac aactgacatt tcagagatgg
     5821 gcgccaactt taaagctgac cgtgtcatag attccaggag atgcctaaag ccggtcatac
     5881 ttgatggcga gagagtcatt ctggctggac ccatgcctgt cacacatgcc agcgctgccc
     5941 agaggagggg gcgcataggc aggaatccca ataaacctgg agatgagtat ctgtatggag
     6001 gtgggtgcgc agagactgac gaagaccatg cacactggct tgaagcaaga atgctccttg
     6061 acaatattta cctccaagat ggcctcatag cctcgctcta tcgacctgag gccgacaaag
     6121 tagcagccat tgagggagag ttcaagctta ggacggagca aaggaagacc tttgtggaac
     6181 tcatgaaaag aggagatctt cctgtttggc tggcctatca ggttgcatct gccggaataa
     6241 cctacacaga tagaagatgg tgctttgatg gcacgaccaa caacaccata atggaagaca
     6301 gtgtgccggc agaggtgtgg accagacacg gagagaaaag agtgctcaaa ccgaggtgga
     6361 tggacgccag agtttgttca gatcatgcgg ccctgaagtc attcaaggag tttgccgctg
     6421 ggaaaagagg agcggctttt ggagtgatgg aagccctggg aacactgcca ggacacatga
     6481 cagagagatt ccaggaagcc attgacaacc tcgctgtgct catgcgggca gagactggaa
     6541 gcaggcctta caaagccgcg gcggcccaat tgccggagac cctagagacc attatgcttt
     6601 tggggttgct gggaacagtc tcgctgggaa tctttttcgt cttgatgagg aacaagggca
     6661 tagggaagat gggctttgga atggtgactc ttggggccag cgcatggctc atgtggctct
     6721 cggaaattga gccagccaga attgcatgtg tcctcattgt tgtgttccta ttgctggtgg
     6781 tgctcatacc tgagccagaa aagcaaagat ctccccagga caaccaaatg gcaatcatca
     6841 tcatggtagc agtaggtctt ctgggcttga ttaccgccaa tgaactcgga tggttggaga
     6901 gaacaaagag tgacctaagc catctaatgg gaaggagaga ggagggggca accataggat
     6961 tctcaatgga cattgacctg cggccagcct cagcttgggc catctatgct gccttgacaa
     7021 ctttcattac cccagctgtc caacatgcag tgaccacttc atacaacaac tactccttaa
     7081 tggcgatggc cacgcaagct ggagtgttgt ttggtatggg caaagggatg ccattctacg
     7141 catgggactt tggagtcccg ctgctaatga taggttgcta ctcacaatta acacccctga
     7201 ccctaatagt ggccatcatt ttgctcgtgg cgcactacat gtacttgatc ccagggctgc
     7261 aggcagcagc tgcgcgtgct gcccagaaga gaacggcagc tggcatcatg aagaaccctg
     7321 ttgtggatgg aatagtggtg actgacattg acacaatgac aattgacccc caagtggaga
     7381 aaaagatggg acaggtgcta ctcatagcag tagccgtctc cagcgccata ctgtcgcgga
     7441 ccgcctgggg gtggggggag gctggggccc tgatcacagc cgcaacttcc actttgtggg
     7501 aaggctctcc gaacaagtac tggaactcct ctacagccac ttcactgtgt aacattttta
     7561 ggggaagtta cttggctgga gcttctctaa tctacacagt aacaagaaac gctggcttgg
     7621 tcaagagacg tgggggtgga acaggagaga ccctgggaga gaaatggaag gcccgcttga
     7681 accagatgtc ggccctggag ttctactcct acaaaaagtc aggcatcacc gaggtgtgca
     7741 gagaagaggc ccgccgcgcc ctcaaggacg gtgtggcaac gggaggccat gctgtgtccc
     7801 gaggaagtgc aaagctgaga tggttggtgg agcggggata cctgcagccc tatggaaagg
     7861 tcattgatct tggatgtggc agagggggct ggagttacta cgccgccacc atccgcaaag
     7921 ttcaagaagt gaaaggatac acaaaaggag gccctggtca tgaagaaccc gtgttggtgc
     7981 aaagctatgg gtggaacata gtccgtctta agagtggggt ggacgtcttt catatggcgg
     8041 ctgagccgtg tgacacgttg ctgtgtgaca taggtgagtc atcatctagt cctgaagtgg
     8101 aagaagcacg gacgctcaga gtcctctcca tggtggggga ttggcttgaa aaaagaccag
     8161 gagccttttg tataaaagtg ttgtgcccat acaccagcac tatgatggaa accctggagc
     8221 gactgcagcg taggtatggg ggaggactgg tcagagtgcc actctcccgc aactctacac
     8281 atgagatgta ctgggtctct ggagcgaaaa gcaacaccat aaaaagtgtg tccaccacga
     8341 gccagctcct cttggggcgc atggacgggc ctaggaggcc agtgaaatat gaggaggatg
     8401 tgaatctcgg ctctggcacg cgggctgtgg taagctgcgc tgaagctccc aacatgaaga
     8461 tcattggtaa ccgcattgaa aggatccgca gtgagcacgc ggaaacgtgg ttctttgacg
     8521 agaaccaccc atataggaca tgggcttacc atggaagcta tgaggccccc acacaagggt
     8581 cagcgtcctc tctaataaac ggggttgtca ggctcctgtc aaaaccctgg gatgtggtga
     8641 ctggagtcac aggaatagcc atgaccgaca ccacaccgta tggtcagcaa agagttttca
     8701 aggaaaaagt ggacactagg gtgccagacc cccaagaagg cactcgtcag gttatgagca
     8761 tggtctcttc ctggttgtgg aaagagctag gcaaacacaa acggccacga gtctgtacca
     8821 aagaagagtt catcaacaag gttcgtagca atgcagcatt aggggcaata tttgaagagg
     8881 aaaaagagtg gaagactgca gtggaagctg tgaacgatcc aaggttctgg gctctagtgg
     8941 acaaggaaag agagcaccac ctgagaggag agtgccagag ttgtgtgtac aacatgatgg
     9001 gaaaaagaga aaagaaacaa ggggaatttg gaaaggccaa gggcagccgc gccatctggt
     9061 atatgtggct aggggctaga tttctagagt tcgaagccct tggattcttg aacgaggatc
     9121 actggatggg gagagagaac tcaggaggtg gtgttgaagg gctgggatta caaagactcg
     9181 gatatgtcct agaagagatg agtcgcatac caggaggaag gatgtatgca gatgacactg
     9241 ctggctggga cacccgcatt agcaggtttg atctggagaa tgaagctcta atcaccaacc
     9301 aaatggagaa agggcacagg gccttggcat tggccataat caagtacaca taccaaaaca
     9361 aagtggtaaa ggtccttaga ccagctgaaa aagggaaaac agttatggac attatttcga
     9421 gacaagacca aagggggagc ggacaagttg tcacttacgc tcttaacaca tttaccaacc
     9481 tagtggtgca actcattcgg aatatggagg ctgaggaagt tctagagatg caagacttgt
     9541 ggctgctgcg gaggtcagag aaagtgacca actggttgca gagcaacgga tgggataggc
     9601 tcaaacgaat ggcagtcagt ggagatgatt gcgttgtgaa gccaattgat gataggtttg
     9661 cacatgccct caggttcttg aatgatatgg gaaaagttag gaaggacaca caagagtgga
     9721 aaccctcaac tggatgggac aactgggaag aagttccgtt ttgctcccac cacttcaaca
     9781 agctccatct caaggacggg aggtccattg tggttccctg ccgccaccaa gatgaactga
     9841 ttggccgggc ccgcgtctct ccaggggcgg gatggagcat ccgggagact gcttgcctag
     9901 caaaatcata tgcgcaaatg tggcagctcc tttatttcca cagaagggac ctccgactga
     9961 tggccaatgc catttgttca tctgtgccag ttgactgggt tccaactggg agaactacct
    10021 ggtcaatcca tggaaaggga gaatggatga ccactgaaga catgcttgtg gtgtggaaca
    10081 gagtgtggat tgaggagaac gaccacatgg aagacaagac cccagttgcg aaatggacag
    10141 acattcccta tttgggaaaa agggaagact tgtggtgtgg atctctcata gggcacagac
    10201 cgcgcaccac ctgggctgag aacattaaaa acacagtcaa catggtgcgc aggatcatag
    10261 gtgatgaaga aaagtacatg gactacctat ccacccaagt tcgctacttg ggtgaagaag
    10321 ggtccacacc tggagtgctg taagcaccaa tcttaatgtt gtcaggcctg ctagtcagcc
    10381 acagcttggg gaaagctgtg cagcctgtga cccccccagg agaagctggg aaaccaagcc
    10441 tatagtcagg ccgagaacgc catggcacgg aagaagccat gctgcctgtg agcccctcag
    10501 aggacactga gtcaaaaaac cccacgcgct tggaggcgca ggatgggaaa agaaggtggc
    10561 gaccttcccc acccttcaat ctggggcctg aactggagat cagctgtgga tctccagaag
    10621 agggactagt ggttagagga gaccccccgg aaaacgcaaa acagcatatt ga

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18465	18465	100%	0.0	99%	KX087102.1
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	18465	18465	100%	0.0	99%	KU820897.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18444	18444	100%	0.0	99%	KU647676.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18426	18426	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18420	18420	100%	0.0	99%	KU922923.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18399	18399	100%	0.0	99%	KU991811.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18393	18393	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	18390	18390	100%	0.0	99%	KJ776791.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18381	18381	100%	0.0	99%	KU321639.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18375	18375	100%	0.0	99%	KX051563.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18372	18372	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18372	18372	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18372	18372	100%	0.0	99%	KU365779.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18366	18366	100%	0.0	99%	KU926309.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18363	18363	99%	0.0	99%	KU497555.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18354	18354	100%	0.0	99%	KU940228.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KU729217.2
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KU365777.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU501217.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU312312.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18345	18345	100%	0.0	99%	KU527068.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU501216.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18339	18339	100%	0.0	99%	KU501215.1
Select seq gb|KX087101.1|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18336	18336	100%	0.0	99%	KX087101.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18330	18330	100%	0.0	99%	KU926310.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU820898.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18327	18327	100%	0.0	99%	KU870645.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18321	18321	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18321	18321	100%	0.0	99%	KU853012.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU955590.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18300	18300	100%	0.0	99%	KX117076.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU963796.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18285	18285	100%	0.0	99%	KU820899.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18258	18258	99%	0.0	99%	KU940224.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	18186	18186	100%	0.0	99%	KU866423.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18146	18146	100%	0.0	99%	KU744693.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18056	18056	100%	0.0	99%	KU681081.3
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17762	17762	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17762	17762	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17721	17721	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17603	17603	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17447	17447	100%	0.0	98%	KU681082.3
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16420	16420	99%	0.0	95%	HQ234499.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	13306	13306	100%	0.0	89%	KF268949.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	13302	13302	100%	0.0	89%	KF383115.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	13297	13297	100%	0.0	89%	KF268948.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13295	13295	100%	0.0	89%	KU720415.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	13290	13290	100%	0.0	89%	KF268950.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	13290	13290	99%	0.0	89%	HQ234498.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	13286	13286	100%	0.0	89%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	13277	13277	100%	0.0	89%	KU955592.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	13277	13277	100%	0.0	89%	KF383119.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	13272	13272	100%	0.0	89%	LC002520.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13266	13266	100%	0.0	89%	DQ859059.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	13259	13259	100%	0.0	89%	KU955591.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	13256	13256	100%	0.0	89%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	13256	13256	100%	0.0	89%	KU955594.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	13252	13252	100%	0.0	89%	KF383116.1
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	13236	13236	99%	0.0	89%	HQ234501.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	13214	13214	100%	0.0	89%	AY632535.2
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	13178	13178	100%	0.0	88%	KF383117.1
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	13153	13260	100%	0.0	88%	KU963574.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	13153	13153	99%	0.0	88%	HQ234500.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	12949	13017	100%	0.0	88%	KF383118.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	12873	12873	97%	0.0	89%	KF383121.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	10862	10862	97%	0.0	84%	KF383120.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	5034	14427	87%	0.0	95%	KU940227.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	4962	4962	27%	0.0	99%	KU312314.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	4935	4935	27%	0.0	99%	KU312313.1
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	4677	4677	25%	0.0	99%	KU646828.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	4677	4677	25%	0.0	99%	KU646827.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	4226	13313	75%	0.0	95%	KX101060.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	3434	3434	18%	0.0	99%	KU312315.1
Select seq gb|KU740199.1|	Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds	3211	3211	17%	0.0	99%	KU740199.1
Select seq gb|KX101066.1|	Zika virus isolate Bahia01, partial genome	3119	13104	74%	0.0	99%	KX101066.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	2695	2695	14%	0.0	99%	KJ634273.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	2250	10777	65%	0.0	92%	KX101064.1
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	2075	2075	11%	0.0	99%	KU686218.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	2021	2021	11%	0.0	99%	KU179098.1
Select seq gb|KX101061.1|	Zika virus isolate Bahia03, partial genome	1846	13893	78%	0.0	100%	KX101061.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	1838	1838	9%	0.0	99%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	1838	1838	9%	0.0	99%	KX059013.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1752	1752	9%	0.0	99%	KM078936.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1748	1748	9%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1746	1746	9%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078933.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1743	1743	9%	0.0	99%	KM078929.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1602	1602	8%	0.0	99%	KJ873160.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1420	1420	7%	0.0	99%	KJ873161.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1382	1382	7%	0.0	99%	KM851039.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1353	1353	7%	0.0	99%	KU985087.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1346	1346	7%	0.0	99%	KU556802.1

[niman]

Sequence map update

https://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en

 

[niman]

LOCUS       KX156775               10630 bp ss-RNA     linear   VRL 05-MAY-2016
DEFINITION  Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015,
            complete genome.
ACCESSION   KX156775
VERSION     KX156775.1  GI:1024286104
DBLINK      BioProject: PRJNA314889
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10630)
  AUTHORS   Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N.,
            Stockwell,T., Shrivastava,S., Amedeo,P., Williams,M., Hu,L.,
            Das,S.R. and Rashid,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-APR-2016) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
COMMENT     This work was supported by the National Institute of Allergy and
            Infectious Diseases (NIAID), Genome Center for Infectious Diseases
            (GCID) program.
            
            ##Genome-Assembly-Data-START##
            Current Finishing Status :: Finished
            Assembly Method          :: clc_ref_assemble_long v. 3.22.55705
            Genome Coverage          :: 240.2x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10630
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /strain="ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015"
                     /host="Homo sapiens"
                     /db_xref="BEI:NR-50220"
                     /db_xref="taxon:64320"
                     /lab_host="Cercopithecus aethiops kidney epithelial cells"
                     /country="Panama"
                     /collection_date="11-Dec-2015"
                     /note="passage details: V1-V3"
     misc_feature    1..10630
                     /db_xref="ViPR:ZIKVBE_ZIKVBEI_00009.MAIN"
     gene            57..10328
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
     CDS             57..10328
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="ANB66183.1"
                     /db_xref="GI:1024286105"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGIFSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT
                     PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST
                     QVRYLGEEGSTPGVL"
     mat_peptide     57..368
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="capsid protein C"
                     /note="core protein"
     mat_peptide     423..701
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="protein pr"
     mat_peptide     702..926
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="small envelope protein M"
                     /note="membrane glycoprotein M"
     mat_peptide     927..2438
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="envelope protein E"
     mat_peptide     2439..3494
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="nonstructural protein NS1"
     mat_peptide     3495..4172
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="nonstructural protein NS2A"
     mat_peptide     4173..4562
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="nonstructural protein NS2B"
     mat_peptide     4563..6413
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="nonstructural protein NS3"
     mat_peptide     6414..6794
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="nonstructural protein NS4A"
     mat_peptide     6795..6863
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="protein 2K"
     mat_peptide     6864..7616
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="nonstructural protein NS4B"
     mat_peptide     7617..10325
                     /gene="GP1"
                     /locus_tag="A2G93_63485gpGP1"
                     /product="RNA-dependent RNA polymerase NS5"
                     /note="nonstructural protein 5"
ORIGIN      
        1 gctaacaaca gtatcaacag gttttatttt ggatttggaa acgagagttt ctggtcatga
       61 aaaacccaaa aaagaaatcc ggaggattcc ggattgtcaa tatgctaaaa cgcggagtag
      121 cccgtgtgag cccctttggg ggcttgaaga ggctgccagc cggacttctg ctgggtcatg
      181 ggcccatcag gatggtcttg gcgattctag cctttttgag attcacggca atcaagccat
      241 cactgggtct catcaataga tggggttcag tggggaaaaa agaggctatg gaaataataa
      301 agaagttcaa gaaagatctg gctgccatgc tgagaataat caatgctagg aaggagaaga
      361 agagacgagg cgcagaaact agtgtcggaa ttgttggcct cctgctgacc acagctatgg
      421 cagcggaggt cactagacgc gggagtgcat actatatgta cttggacaga aacgatgctg
      481 gggaggccat atcttttcca accacattgg ggatgaataa gtgttatata cagatcatgg
      541 atcttggaca catgtgtgat gccaccatga gctatgaatg ccctatgctg gatgaggggg
      601 tggaaccaga tgacgtcgat tgttggtgca acacgacgtc aacttgggtt gtgtacggaa
      661 cctgccatca caaaaaaggt gaagcacgga gatctagaag agccgtgacg ctcccctccc
      721 attccactag gaagctgcaa acgcggtcgc aaacctggtt ggaatcaaga gaatacacaa
      781 agcacttgat tagagtcgaa aattggatat tcaggaaccc tggtttcgct ttagcagcag
      841 ctgccatcgc ttggcttttg ggaagctcaa cgagccaaaa agtcatatac ttggtcatga
      901 tactgctgat tgccccggca tacagcatca ggtgcatagg agtcagcaat agggactttg
      961 tggaaggtat gtcaggtggg acttgggttg atgtcgtctt ggaacatgga ggttgtgtca
     1021 ccgtaatggc acaggacaaa ccgactgtcg acatagagct ggttacaaca acagtcagca
     1081 acatggcgga ggtaagatcc tactgctatg aggcatcaat atcagacatg gcttcggaca
     1141 gccgctgccc aacacaaggt gaagcctacc ttgacaagca atcagacact caatatgtct
     1201 gcaaaagaac gttagtggac agaggctggg gaaatggatg tggacttttt ggcaaaggga
     1261 gcctggtgac atgcgctaag tttgcatgct ccaagaaaat gaccgggaag agcatccagc
     1321 cagagaatct ggagtaccgg ataatgttgt cagttcatgg ctcccagcac agtgggatga
     1381 tcgttaatga cacaggacat gaaactgatg agaatagagc gaaggttgag ataacgccca
     1441 attcaccaag agccgaagcc accctggggg gttttggaag cctaggactt gattgtgaac
     1501 cgaggacagg ccttgacttt tcagatttgt attacttgac tatgaataac aagcactggt
     1561 tggttcacaa ggagtggttc cacgacattc cattaccttg gcacgctggg gcagacaccg
     1621 gaactccaca ctggaacaac aaagaagcac tggtagagtt caaggacgca catgccaaaa
     1681 ggcaaactgt cgtggttcta gggagtcaag aaggagcagt tcacacggcc cttgctggag
     1741 ctctggaggc tgagatggat ggtgcaaagg gaaggctgtc ctctggccac ttgaaatgtc
     1801 gcctgaaaat ggataaactt agattgaagg gcgtgtcata ctccttgtgt accgcagcgt
     1861 tcacattcac caagatcccg gctgaaacac tgcacgggac agtcacagtg gaggtacagt
     1921 acgcagggac agatggacct tgcaaggttc cagctcagat ggcggtggac atgcaaactc
     1981 tgaccccagt tgggaggttg ataaccgcta accccgtaat cactgaaagc actgagaact
     2041 ctaagatgat gctggaactt gatccaccat ttggggactc ttacattgtc ataggagtcg
     2101 gggagaagaa gatcacccac cactggcaca ggagtggcag caccattgga aaagcatttg
     2161 aagccactgt gagaggtgcc aagagaatgg cagtcttggg agacacagcc tgggactttg
     2221 gatcagttgg aggcgctctc aactcattgg gcaagggcat ccatcaaatt tttggagcag
     2281 ctttcaaatc attgtttgga ggaatgtcct ggttctcaca aattctcatt ggaacgttgc
     2341 tgatgtggtt gggtctgaac acaaagaatg gatctatttc ccttatgtgc ttggccttag
     2401 ggggagtgtt gatcttctta tccacagccg tctctgctga tgtggggtgc tcggtggact
     2461 tctcaaagaa ggagacgaga tgtggtacag gggtgttcgt ctataacgac gttgaagcct
     2521 ggagggacag gtacaagtac catcctgact ccccccgtag attggcagca gcagtcaagc
     2581 aagcctggga agatggtatc tgcgggatct tctctgtttc aagaatggaa aacatcatgt
     2641 ggagatcagt agaaggggag ctcaacgcaa tcctggaaga gaatggagtt caactgacgg
     2701 tcgttgtggg atctgtaaaa aaccccatgt ggagaggtcc acagagattg cccgtgcctg
     2761 tgaacgagct gccccacggc tggaaggctt gggggaaatc gtacttcgtc agagcagcaa
     2821 agacaaataa cagctttgtc gtggatggtg acacactgaa ggaatgccca ctcaaacata
     2881 gagcatggaa cagctttctt gtggaggatc atgggttcgg ggtatttcac actagtgtct
     2941 ggctcaaggt tagagaagat tattcattag agtgtgatcc agccgttatt ggaacagctg
     3001 ttaagggaaa ggaggctgta cacagtgatc taggctactg gattgagagt gagaagaatg
     3061 acacatggag gctgaagagg gcccatctga tcgagatgaa aacatgtgaa tggccaaagt
     3121 cccacacatt gtggacagat ggaatagaag agagtgatct gatcataccc aagtctttag
     3181 ctgggccact cagccatcac aataccagag agggctacag gacccaaatg aaagggccat
     3241 ggcacagtga agagcttgaa attcggtttg aggaatgccc aggcactaag gtccacgtgg
     3301 aggaaacatg tggaacaaga ggaccatctc tgagatcaac cactgcaagc ggaagggtga
     3361 tcgaggaatg gtgctgcagg gagtgcacaa tgcccccact gtcgttctgg gctaaagatg
     3421 gctgttggta tggaatggag ataaggccca ggaaagaacc agaaagcaac ttagtaaggt
     3481 caatggtgac tgcaggatca actgatcaca tggatcactt ctcccttgga gtgcttgtga
     3541 ttctgctcat ggtgcaggaa gggctgaaga agagaatgac cacaaagatc atcataagca
     3601 catcaatggc agtgctggta gctatgatcc tgggaggatt ttcaatgagt gacctggcta
     3661 agcttgcaat cttgatgggt gccaccttcg cggaaatgaa cactggagga gatgtggctc
     3721 atctggcgct gatagcagca ttcaaagtca gaccagcgtt gctggtatct ttcatcttca
     3781 gagctaattg gacaccccgt gaaagcatgc tgctggcctt ggcctcgtgt cttttgcaaa
     3841 ctgcgatctc cgccttggag ggcgacctga tggttctcat caatggtttt gctttggcct
     3901 ggttggcaat acgagcgatg gttgttccac gcactgacaa catcaccttg gcaatcctgg
     3961 ctgctctgac accactggcc cggggcacac tgcttgtggc gtggagagca ggccttgcta
     4021 cttgcggggg gtttatgctc ctctctctga agggaaaagg cagtgtgaag aagaacttac
     4081 catttgtcat ggccctggga ctaaccgctg tgaggctggt cgaccccatc aacgtggtgg
     4141 gactgctgtt gctcacaagg agtgggaagc ggagctggcc ccctagcgaa gtactcacag
     4201 ctgttggcct gatatgcgca ttggctggag ggttcgccaa ggcagatata gagatggctg
     4261 ggcccatggc cgcggtcggt ctgctaattg tcagttacgt ggtctcagga aagagtgtgg
     4321 acatgtacat tgaaagagca ggtgacatca catgggaaaa agatgcggaa gtcactggaa
     4381 acagtccccg gctcgatgtg gcgctagatg agagtggtga tttctccctg gtggaggatg
     4441 acggtccccc catgagagag atcatactca aggtggtcct gatgaccatc tgtggcatga
     4501 acccaatagc catacccttt gcagctggag cgtggtacgt atacgtgaag actggaaaaa
     4561 ggagtggtgc tctatgggat gtgcctgctc ccaaggaagt aaaaaagggg gagaccacag
     4621 atggagtgta cagagtaatg actcgtagac tgctaggttc aacacaagtt ggagtgggag
     4681 ttatgcaaga gggggtcttt cacactatgt ggcacgtcac aaaaggatcc gcgctgagaa
     4741 gcggtgaagg gagacttgat ccatactggg gagatgtcaa gcaggatctg gtgtcatact
     4801 gtggtccatg gaagctagat gccgcctggg acgggcacag cgaggtgcag ctcttggccg
     4861 tgccccccgg agagagagcg aggaacatcc agactctgcc cggaatattt aagacaaagg
     4921 atggggacat tggagcggtt gcgctggatt acccagcagg aacttcagga tctccaatcc
     4981 tagacaagtg tgggagagtg ataggacttt atggcaatgg ggtcgtgatc aaaaatggga
     5041 gttatgttag tgccatcacc caagggagga gggaggaaga gactcctgtt gagtgcttcg
     5101 agccttcgat gctgaagaag aagcagctaa ctgtcttaga cttgcatcct ggagctggga
     5161 aaaccaggag agttcttcct gaaatagtcc gtgaagccat aaaaacaaga ctccgtactg
     5221 tgatcttagc tccaaccagg gttgtcgctg ctgaaatgga ggaagccctt agagggcttc
     5281 cagtgcgtta tatgacaaca gcagtcaatg tcacccactc tggaacagaa atcgtcgact
     5341 taatgtgcca tgccaccttc acttcacgtc tactacagcc aatcagagtc cccaactata
     5401 atctgtatat tatggatgag gcccacttca cagatccctc aagtatagca gcaagaggat
     5461 acatttcaac aagggttgag atgggcgagg cggctgccat cttcatgacc gccacgccac
     5521 caggaacccg tgacgcattt ccggactcca actcaccaat tatggacacc gaagtggaag
     5581 tcccagagag agcctggagc tcaggctttg attgggtgac ggatcattct ggaaaaacag
     5641 tttggtttgt tccaagcgtg aggaacggca atgagatcgc agcttgtctg acaaaggctg
     5701 gaaaacgggt catacagctc agcagaaaga cttttgagac agagttccag aaaacaaaac
     5761 atcaagagtg ggactttgtc gtgacaactg acatttcaga gatgggcgcc aactttaaag
     5821 ctgaccgtgt catagattcc aggagatgcc taaagccggt catacttgat ggcgagagag
     5881 tcattctggc tggacccatg cctgtcacac atgccagcgc tgcccagagg agggggcgca
     5941 taggcaggaa tcccaataaa cctggagatg agtatctgta tggaggtggg tgcgcagaga
     6001 ctgacgaaga ccatgcacac tggcttgaag caagaatgct ccttgacaat atttacctcc
     6061 aagatggcct catagcctcg ctctatcgac ctgaggccga caaagtagca gccattgagg
     6121 gagagttcaa gcttaggacg gagcaaagga agacctttgt ggaactcatg aaaagaggag
     6181 atcttcctgt ttggctggcc tatcaggttg catctgccgg aataacctac acagatagaa
     6241 gatggtgctt tgatggcacg accaacaaca ccataatgga agacagtgtg ccggcagagg
     6301 tgtggaccag acacggagag aaaagagtgc tcaaaccgag gtggatggac gccagagttt
     6361 gttcagatca tgcggccctg aagtcattca aggagtttgc cgctgggaaa agaggagcgg
     6421 cttttggagt gatggaagcc ctgggaacac tgccaggaca catgacagag agattccagg
     6481 aagccattga caacctcgct gtgctcatgc gggcagagac tggaagcagg ccttacaaag
     6541 ccgcggcggc ccaattgccg gagaccctag agaccattat gcttttgggg ttgctgggaa
     6601 cagtctcgct gggaatcttt ttcgtcttga tgaggaacaa gggcataggg aagatgggct
     6661 ttggaatggt gactcttggg gccagcgcat ggctcatgtg gctctcggaa attgagccag
     6721 ccagaattgc atgtgtcctc attgttgtgt tcctattgct ggtggtgctc atacctgagc
     6781 cagaaaagca aagatctccc caggacaacc aaatggcaat catcatcatg gtagcagtag
     6841 gtcttctggg cttgattacc gccaatgaac tcggatggtt ggagagaaca aagagtgacc
     6901 taagccatct aatgggaagg agagaggagg gggcaaccat aggattctca atggacattg
     6961 acctgcggcc agcctcagct tgggccatct atgctgcctt gacaactttc attaccccag
     7021 ctgtccaaca tgcagtgacc acttcataca acaactactc cttaatggcg atggccacgc
     7081 aagctggagt gttgtttggt atgggcaaag ggatgccatt ctacgcatgg gactttggag
     7141 tcccgctgct aatgataggt tgctactcac aattaacacc cctgacccta atagtggcca
     7201 tcattttgct cgtggcgcac tacatgtact tgatcccagg gctgcaggca gcagctgcgc
     7261 gcgctgccca gaagagaacg gcagctggca tcatgaagaa ccctgttgtg gatggaatag
     7321 tggtgactga cattgacaca atgacaattg acccccaagt ggagaaaaag atgggacagg
     7381 tgctactcat agcagtagcc gtctccagcg ccatactgtc gcggaccgcc tgggggtggg
     7441 gggaggctgg ggccctgatc acagccgcaa cttccacttt gtgggaaggc tctccgaaca
     7501 agtactggaa ctcctctaca gccacttcac tgtgtaacat ttttagggga agttacttgg
     7561 ctggagcttc tctaatctac acagtaacaa gaaacgctgg cttggtcaag agacgtgggg
     7621 gtggaacagg agagaccctg ggagagaaat ggaaggcccg cttgaaccag atgtcggccc
     7681 tggagttcta ctcctacaaa aagtcaggca tcaccgaggt gtgcagagaa gaggcccgcc
     7741 gcgccctcaa ggacggtgtg gcaacgggag gccatgctgt gtcccgagga agtgcaaagc
     7801 tgagatggtt ggtggagcgg ggatacctgc agccctatgg aaaggtcatt gatcttggat
     7861 gtggcagagg gggctggagt tactacgccg ccaccatccg caaagttcaa gaagtgaaag
     7921 gatacacaaa aggaggccct ggtcatgaag aacccgtgtt ggtgcaaagc tatgggtgga
     7981 acatagtccg tcttaagagt ggggtggacg tctttcatat ggcggctgag ccgtgtgaca
     8041 cgttgctgtg tgacataggt gagtcatcat ctagtcctga agtggaagaa gcacggacgc
     8101 tcagagtcct ctccatggtg ggggattggc ttgaaaaaag accaggagcc ttttgtataa
     8161 aagtgttgtg cccatacacc agcactatga tggaaaccct ggagcgactg cagcgtaggt
     8221 atgggggagg actggtcaga gtgccactct cccgcaactc tacacatgag atgtactggg
     8281 tctctggagc gaaaagcaac accataaaaa gtgtgtccac cacgagccag ctcctcttgg
     8341 ggcgcatgga cgggcctagg aggccagtga aatatgagga ggatgtgaat ctcggctctg
     8401 gcacgcgggc tgtggtaagc tgcgctgaag ctcccaacat gaagatcatt ggtaaccgca
     8461 ttgaaaggat ccgcagtgag cacgcggaaa cgtggttctt tgacgagaac cacccatata
     8521 ggacatgggc ttaccatgga agctatgagg cccccacaca agggtcagcg tcctctctaa
     8581 taaacggggt tgtcaggctc ctgtcaaaac cctgggatgt ggtgactgga gtcacaggaa
     8641 tagccatgac cgacaccaca ccgtatggtc agcaaagagt tttcaaggaa aaagtggaca
     8701 ctagggtgcc agacccccaa gaaggcactc gtcaggttat gagcatggtc tcttcctggt
     8761 tgtggaaaga gctaggcaaa cacaaacggc cacgagtctg taccaaagaa gagttcatca
     8821 acaaggttcg tagcaatgca gcattagggg caatatttga agaggaaaaa gagtggaaga
     8881 ctgcagtgga agctgtgaac gatccaaggt tctgggctct agtggacaag gaaagagagc
     8941 accacctgag aggagagtgc cagagttgtg tgtacaacat gatgggaaaa agagaaaaga
     9001 aacaagggga atttggaaag gccaagggca gccgcgccat ctggtatatg tggctagggg
     9061 ctagatttct agagttcgaa gcccttggat tcttgaacga ggatcactgg atggggagag
     9121 agaactcagg aggtggtgtt gaagggctgg gattacaaag actcggatat gtcctagaag
     9181 agatgagtcg cataccagga ggaaggatgt atgcagatga cactgctggc tgggacaccc
     9241 gcattagcag gtttgatctg gagaatgaag ctctaatcac caaccaaatg gagaaagggc
     9301 acagggcctt ggcattggcc ataatcaagt acacatacca aaacaaagtg gtaaaggtcc
     9361 ttagaccagc tgaaaaaggg aaaacagtta tggacattat ttcgagacaa gaccaaaggg
     9421 ggagcggaca agttgtcact tacgctctta acacatttac caacctagtg gtgcaactca
     9481 ttcggaatat ggaggctgag gaagttctag agatgcaaga cttgtggctg ctgcggaggt
     9541 cagagaaagt gaccaactgg ttgcagagca acggatggga taggctcaaa cgaatggcag
     9601 tcagtggaga tgattgcgtt gtgaagccaa ttgatgatag gtttgcacat gccctcaggt
     9661 tcttgaatga tatgggaaaa gttaggaagg acacacaaga gtggaaaccc tcaactggat
     9721 gggacaactg ggaagaagtt ccgttttgct cccaccactt caacaagctc catctcaagg
     9781 acgggaggtc cattgtggtt ccctgccgcc accaagatga actgattggc cgggcccgcg
     9841 tctctccagg ggcgggatgg agcatccggg agactgcttg cctagcaaaa tcatatgcgc
     9901 aaatgtggca gctcctttat ttccacagaa gggacctccg actgatggcc aatgccattt
     9961 gttcatctgt gccagttgac tgggttccaa ctgggagaac tacctggtca atccatggaa
    10021 agggagaatg gatgaccact gaagacatgc ttgtggtgtg gaacagagtg tggattgagg
    10081 agaacgacca catggaagac aagaccccag ttgcgaaatg gacagacatt ccctatttgg
    10141 gaaaaaggga agacttgtgg tgtggatctc tcatagggca cagaccgcgc accacctggg
    10201 ctgagaacat taaaaacaca gtcaacatgg tgcgcaggat cataggtgat gaagaaaagt
    10261 acatggacta cctatccacc caagttcgct acttgggtga agaagggtcc acacctggag
    10321 tgctgtaagc accaatctta atgttgtcag gcctgctagt cagccacagc ttggggaaag
    10381 ctgtgcagcc tgtgaccccc ccaggagaag ctgggaaacc aagcctatag tcaggccgag
    10441 aacgccatgg cacggaagaa gccatgctgc ctgtgagccc ctcagaggac actgagtcaa
    10501 aaaaccccac gcgcttggag gcgcaggatg ggaaaagaag gtggcgacct tccccaccct
    10561 tcaatctggg gcctgaactg gagatcagct gtggatctcc agaagaggga ctagtggtta
    10621 gaggagaccc

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18462	18462	100%	0.0	99%	KX087102.1
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	18462	18462	100%	0.0	99%	KU820897.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18438	18438	100%	0.0	99%	KU647676.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18420	18420	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18417	18417	100%	0.0	99%	KU922923.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18393	18393	100%	0.0	99%	KU991811.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18390	18390	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	18384	18384	100%	0.0	99%	KJ776791.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18375	18375	100%	0.0	99%	KU321639.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18372	18372	100%	0.0	99%	KX051563.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18366	18366	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18366	18366	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18366	18366	100%	0.0	99%	KU365779.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18359	18359	99%	0.0	99%	KU497555.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18354	18354	100%	0.0	99%	KU926309.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18348	18348	100%	0.0	99%	KU940228.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU365777.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU501217.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU312312.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU729217.2
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18339	18339	100%	0.0	99%	KU527068.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU501216.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18336	18336	100%	0.0	99%	KU501215.1
Select seq gb|KX087101.1|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18330	18330	100%	0.0	99%	KX087101.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18327	18327	100%	0.0	99%	KU926310.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU820898.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18321	18321	100%	0.0	99%	KU870645.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18318	18318	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18316	18316	100%	0.0	99%	KU853012.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU955590.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18294	18294	100%	0.0	99%	KX117076.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KU963796.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18282	18282	100%	0.0	99%	KU820899.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18254	18254	99%	0.0	99%	KU940224.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	18182	18182	100%	0.0	99%	KU866423.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18141	18141	100%	0.0	99%	KU744693.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18051	18051	100%	0.0	99%	KU681081.3
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17759	17759	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17757	17757	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17715	17715	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17598	17598	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17447	17447	100%	0.0	98%	KU681082.3
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16424	16424	99%	0.0	95%	HQ234499.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13299	13299	100%	0.0	89%	KU720415.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	13293	13293	100%	0.0	89%	KF383115.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	13293	13293	100%	0.0	89%	KF268949.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	13293	13293	99%	0.0	89%	HQ234498.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	13284	13284	100%	0.0	89%	KF268948.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	13281	13281	100%	0.0	89%	KF383119.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	13277	13277	100%	0.0	89%	LC002520.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	13277	13277	100%	0.0	89%	KF268950.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	13272	13272	100%	0.0	89%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	13263	13263	100%	0.0	89%	KU955592.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	13261	13261	100%	0.0	89%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	13261	13261	100%	0.0	89%	KU955594.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13261	13261	100%	0.0	89%	DQ859059.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	13245	13245	100%	0.0	89%	KU955591.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	13239	13239	100%	0.0	89%	KF383116.1
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	13223	13223	99%	0.0	89%	HQ234501.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	13218	13218	100%	0.0	89%	AY632535.2
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	13169	13169	100%	0.0	88%	KF383117.1
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	13149	13257	100%	0.0	88%	KU963574.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	13147	13147	99%	0.0	88%	HQ234500.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	12954	13022	100%	0.0	88%	KF383118.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	12879	12879	97%	0.0	89%	KF383121.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	10859	10859	97%	0.0	84%	KF383120.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	5038	14422	87%	0.0	95%	KU940227.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	4958	4958	27%	0.0	99%	KU312314.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	4931	4931	27%	0.0	99%	KU312313.1
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	4677	4677	25%	0.0	99%	KU646828.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	4677	4677	25%	0.0	99%	KU646827.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	4226	13301	75%	0.0	95%	KX101060.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	3434	3434	18%	0.0	99%	KU312315.1
Select seq gb|KU740199.1|	Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds	3214	3214	17%	0.0	99%	KU740199.1
Select seq gb|KX101066.1|	Zika virus isolate Bahia01, partial genome	3119	13101	74%	0.0	99%	KX101066.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	2695	2695	14%	0.0	99%	KJ634273.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	2253	10770	65%	0.0	92%	KX101064.1
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	2069	2069	11%	0.0	99%	KU686218.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	2021	2021	11%	0.0	99%	KU179098.1
Select seq gb|KX101061.1|	Zika virus isolate Bahia03, partial genome	1846	13893	78%	0.0	100%	KX101061.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	1838	1838	9%	0.0	99%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	1838	1838	9%	0.0	99%	KX059013.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1752	1752	9%	0.0	99%	KM078936.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1748	1748	9%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1746	1746	9%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078933.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1743	1743	9%	0.0	99%	KM078929.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1602	1602	8%	0.0	99%	KJ873160.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1420	1420	7%	0.0	99%	KJ873161.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1382	1382	7%	0.0	99%	KM851039.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1353	1353	7%	0.0	99%	KU985087.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1346	1346	7%	0.0	99%	KU556802.1

[niman]

Sequence Map Update

https://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en

 

[niman]

LOCUS       KX156776               10631 bp ss-RNA     linear   VRL 05-MAY-2016
DEFINITION  Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015,
            complete genome.
ACCESSION   KX156776
VERSION     KX156776.1  GI:1024286109
DBLINK      BioProject: PRJNA314889
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10631)
  AUTHORS   Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N.,
            Stockwell,T., Shrivastava,S., Amedeo,P., Williams,M., Hu,L.,
            Das,S.R. and Rashid,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-APR-2016) J. Craig Venter Institute, 9704 Medical
            Center Drive, Rockville, MD 20850, USA
COMMENT     This work was supported by the National Institute of Allergy and
            Infectious Diseases (NIAID), Genome Center for Infectious Diseases
            (GCID) program.
            
            ##Genome-Assembly-Data-START##
            Current Finishing Status :: Finished
            Assembly Method          :: clc_ref_assemble_long v. 3.22.55705
            Genome Coverage          :: 258.5x
            Sequencing Technology    :: Illumina
            ##Genome-Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10631
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /strain="ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015"
                     /host="Homo sapiens"
                     /db_xref="BEI:NR-50221"
                     /db_xref="taxon:64320"
                     /lab_host="Cercopithecus aethiops kidney epithelial cells"
                     /country="Panama"
                     /collection_date="18-Dec-2015"
                     /note="passage details: V1-V2"
     misc_feature    1..10631
                     /db_xref="ViPR:ZIKVBE_ZIKVBEI_00010.MAIN"
     gene            57..10328
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
     CDS             57..10328
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="ANB66184.1"
                     /db_xref="GI:1024286110"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT
                     PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST
                     QVRYLGEEGSTPGVL"
     mat_peptide     57..368
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="capsid protein C"
                     /note="core protein"
     mat_peptide     423..701
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="protein pr"
     mat_peptide     702..926
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="small envelope protein M"
                     /note="membrane glycoprotein M"
     mat_peptide     927..2438
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="envelope protein E"
     mat_peptide     2439..3494
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="nonstructural protein NS1"
     mat_peptide     3495..4172
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="nonstructural protein NS2A"
     mat_peptide     4173..4562
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="nonstructural protein NS2B"
     mat_peptide     4563..6413
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="nonstructural protein NS3"
     mat_peptide     6414..6794
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="nonstructural protein NS4A"
     mat_peptide     6795..6863
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="protein 2K"
     mat_peptide     6864..7616
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="nonstructural protein NS4B"
     mat_peptide     7617..10325
                     /gene="GP1"
                     /locus_tag="A2G93_63486gpGP1"
                     /product="RNA-dependent RNA polymerase NS5"
                     /note="nonstructural protein 5"
ORIGIN      
        1 gctaacaaca gtatcaacag gttttatttt ggatttggaa acgagagttt ctggtcatga
       61 aaaacccaaa aaagaaatcc ggaggattcc ggattgtcaa tatgctaaaa cgcggagtag
      121 cccgtgtgag cccctttggg ggcttgaaga ggctgccagc cggacttctg ctgggtcatg
      181 ggcccatcag gatggtcttg gcgattctag cctttttgag attcacggca atcaagccat
      241 cactgggtct catcaataga tggggttcag tggggaaaaa agaggctatg gaaataataa
      301 agaagttcaa gaaagatctg gctgccatgc tgagaataat caatgctagg aaggagaaga
      361 agagacgagg cgcagaaact agtgtcggaa ttgttggcct cctgctgacc acagctatgg
      421 cagcggaggt cactagacgt gggagtgcat actatatgta cttggacaga aacgatgctg
      481 gggaggccat atcttttcca accacattgg ggatgaataa gtgttatata cagatcatgg
      541 atcttggaca catgtgtgat gccaccatga gctatgaatg ccctatgctg gatgaggggg
      601 tggaaccaga tgacgtcgat tgttggtgca acacgacgtc aacttgggtt gtgtacggaa
      661 cctgccatca caaaaaaggt gaagcacgga gatctagaag agccgtgacg ctcccctccc
      721 attccactag gaagctgcaa acgcggtcgc aaacctggtt ggaatcaaga gaatacacaa
      781 agcacttgat tagagtcgaa aattggatat tcaggaaccc tggtttcgct ttagcagcag
      841 ctgccatcgc ttggcttttg ggaagctcaa cgagccaaaa agtcatatac ttggtcatga
      901 tactgctgat tgccccggca tacagcatca ggtgcatagg agtcagcaat agggactttg
      961 tggaaggtat gtcaggtggg acttgggttg atgtcgtctt ggaacatgga ggttgtgtca
     1021 ccgtaatggc acaggacaaa ccgactgtcg acatagagct ggttacaaca acagtcagca
     1081 acatggcgga ggtaagatcc tactgctatg aggcatcaat atcagacatg gcttcggaca
     1141 gccgctgccc aacacaaggt gaagcctacc ttgacaagca atcagacact caatatgtct
     1201 gcaaaagaac gttagtggac agaggctggg gaaatggatg tggacttttt ggcaaaggga
     1261 gcctggtgac atgcgctaag tttgcatgct ccaagaaaat gaccgggaag agcatccagc
     1321 cagagaatct ggagtaccgg ataatgttgt cagttcatgg ctcccagcac agtgggatga
     1381 tcgttaatga cacaggacat gaaactgatg agaatagagc gaaggttgag ataacgccca
     1441 attcaccaag agccgaagcc accctggggg gttttggaag cctaggactt gattgtgaac
     1501 cgaggacagg ccttgacttt tcagatttgt attacttgac tatgaataac aagcactggt
     1561 tggttcacaa ggagtggttc cacgacattc cattaccttg gcacgctggg gcagacaccg
     1621 gaactccaca ctggaacaac aaagaagcac tggtagagtt caaggacgca catgccaaaa
     1681 ggcaaactgt cgtggttcta gggagtcaag aaggagcagt tcacacggcc cttgctggag
     1741 ctctggaggc tgagatggat ggtgcaaagg gaaggctgtc ctctggccac ttgaaatgtc
     1801 gcctgaaaat ggataaactt agattgaagg gcgtgtcata ctccttgtgt accgcagcgt
     1861 tcacattcac caagatcccg gctgaaacac tgcacgggac agtcacagtg gaggtacagt
     1921 acgcagggac agatggacct tgcaaggttc cagctcagat ggcggtggac atgcaaactc
     1981 tgaccccagt tgggaggttg ataaccgcta accccgtaat cactgaaagc actgagaact
     2041 ctaagatgat gctggaactt gatccaccat ttggggactc ttacattgtc ataggagtcg
     2101 gggagaagaa gatcacccac cactggcaca ggagtggcag caccattgga aaagcatttg
     2161 aagccactgt gagaggtgcc aagagaatgg cagtcttggg agacacagcc tgggactttg
     2221 gatcagttgg aggcgctctc aactcattgg gcaagggcat ccatcaaatt tttggagcag
     2281 ctttcaaatc attgtttgga ggaatgtcct ggttctcaca aattctcatt ggaacgttgc
     2341 tgatgtggtt gggtctgaac acaaagaatg gatctatttc ccttatgtgc ttggccttag
     2401 ggggagtgtt gatcttctta tccacagccg tctctgctga tgtggggtgc tcggtggact
     2461 tctcaaagaa ggagacgaga tgtggtacag gggtgttcgt ctataacgac gttgaagcct
     2521 ggagggacag gtacaagtac catcctgact ccccccgtag attggcagca gcagtcaagc
     2581 aagcctggga agatggtatc tgcgggatct cctctgtttc aagaatggaa aacatcatgt
     2641 ggagatcagt agaaggggag ctcaacgcaa tcctggaaga gaatggagtt caactgacgg
     2701 tcgttgtggg atctgtaaaa aaccccatgt ggagaggtcc acagagattg cccgtgcctg
     2761 tgaacgagct gccccacggc tggaaggctt gggggaaatc gtacttcgtc agagcagcaa
     2821 agacaaataa cagctttgtc gtggatggtg acacactgaa ggaatgccca ctcgaacata
     2881 gagcatggaa cagctttctt gtggaggatc atgggttcgg ggtatttcac actagtgtct
     2941 ggctcaaggt tagagaagat tattcattag agtgtgatcc agccgttatt ggaacagctg
     3001 ttaagggaaa ggaggctgta cacagtgatc taggctactg gattgagagt gagaagaatg
     3061 acacatggag gctgaagagg gcccatctga tcgagatgaa aacatgtgaa tggccaaagt
     3121 cccacacatt gtggacagat ggaatagaag agagtgatct gatcataccc aagtctttag
     3181 ctgggccact cagccatcac aataccagag agggctacag gacccaaatg aaagggccat
     3241 ggcacagtga agagcttgaa attcggtttg aggaatgccc aggcactaag gtccacgtgg
     3301 aggaaacatg tggaacaaga ggaccatctc tgagatcaac cactgcaagc ggaagggtga
     3361 tcgaggaatg gtgctgcagg gagtgcacaa tgcccccact gtcgttctgg gctaaagatg
     3421 gctgttggta tggaatggag ataaggccca ggaaagaacc agaaagcaac ttagtaaggt
     3481 caatggtgac tgcaggatca actgatcaca tggatcactt ctcccttgga gtgcttgtga
     3541 ttctgctcat ggtgcaggaa gggctgaaga agagaatgac cacaaagatc atcataagca
     3601 catcaatggc agtgctggta gctatgatcc tgggaggatt ttcaatgagt gacctggcta
     3661 agcttgcaat cttgatgggt gccaccttcg cggaaatgaa cactggagga gatgtggctc
     3721 atctggcgct gatagcagca ttcaaagtca gaccagcgtt gctggtatct ttcatcttca
     3781 gagctaattg gacaccccgt gaaagcatgc tgctggcctt ggcctcgtgt cttttgcaaa
     3841 ctgcgatctc cgccttggag ggcgacctga tggttctcat caatggtttt gctttggcct
     3901 ggttggcaat acgagcgatg gttgttccac gcactgacaa catcaccttg gcaatcctgg
     3961 ctgctctgac accactggcc cggggcacac tgcttgtggc gtggagagca ggccttgcta
     4021 cttgcggggg gtttatgctc ctctctctga agggaaaagg cagtgtgaag aagaacttac
     4081 catttgtcat ggccctggga ctaaccgctg tgaggctggt cgaccccatc aacgtggtgg
     4141 gactgctgtt gctcacaagg agtgggaagc ggagctggcc ccctagcgaa gtactcacag
     4201 ctgttggcct gatatgcgca ttggctggag ggttcgccaa ggcagatata gagatggctg
     4261 ggcccatggc cgcggtcggt ctgctaattg tcagttacgt ggtctcagga aagagtgtgg
     4321 acatgtacat tgaaagagca ggtgacatca catgggaaaa agatgcggaa gtcactggaa
     4381 acagtccccg gctcgatgtg gcgctagatg agagtggtga tttctccctg gtggaggatg
     4441 acggtccccc catgagagag atcatactca aggtggtcct gatgaccatc tgtggcatga
     4501 acccaatagc catacccttt gcagctggag cgtggtacgt atacgtgaag actggaaaaa
     4561 ggagtggtgc tctatgggat gtgcctgctc ccaaggaagt aaaaaagggg gagaccacag
     4621 atggagtgta cagagtaatg actcgtagac tgctaggttc aacacaagtt ggagtgggag
     4681 ttatgcaaga gggggtcttt cacactatgt ggcacgtcac aaaaggatcc gcgctgagaa
     4741 gcggtgaagg gagacttgat ccatactggg gagatgtcaa gcaggatctg gtgtcatact
     4801 gtggtccatg gaagctagat gccgcctggg acgggcacag cgaggtgcag ctcttggccg
     4861 tgccccccgg agagagagcg aggaacatcc agactctgcc cggaatattt aagacaaagg
     4921 atggggacat tggagcggtt gcgctggatt acccagcagg aacttcagga tctccaatcc
     4981 tagacaagtg tgggagagtg ataggacttt atggcaatgg ggtcgtgatc aaaaatggga
     5041 gttatgttag tgccatcacc caagggagga gggaggaaga gactcctgtt gagtgcttcg
     5101 agccttcgat gctgaagaag aagcagctaa ctgtcttaga cttgcatcct ggagctggga
     5161 aaaccaggag agttcttcct gaaatagtcc gtgaagccat aaaaacaaga ctccgtactg
     5221 tgatcttagc tccaaccagg gttgtcgctg ctgaaatgga ggaagccctt agagggcttc
     5281 cagtgcgtta tatgacaaca gcagtcaatg tcacccactc tggaacagaa atcgtcgact
     5341 taatgtgcca tgccaccttc acttcacgtc tactacagcc aatcagagtc cccaactata
     5401 atctgtatat tatggatgag gcccacttca cagatccctc aagtatagca gcaagaggat
     5461 acatttcaac aagggttgag atgggcgagg cggctgccat cttcatgacc gccacgccac
     5521 caggaacccg tgacgcattt ccggactcca actcaccaat tatggacacc gaagtggaag
     5581 tcccagagag agcctggagc tcaggctttg attgggtgac ggatcattct ggaaaaacag
     5641 tttggtttgt tccaagcgtg aggaacggca atgagatcgc agcttgtctg acaaaggctg
     5701 gaaaacgggt catacagctc agcagaaaga cttttgagac agagttccag aaaacaaaac
     5761 atcaagagtg ggactttgtc gtgacaactg acatttcaga gatgggcgcc aactttaaag
     5821 ctgaccgtgt catagattcc aggagatgcc taaagccggt catacttgat ggcgagagag
     5881 tcattctggc tggacccatg cctgtcacac atgccagcgc tgcccagagg agggggcgca
     5941 taggcaggaa tcccaataaa cctggagatg agtatctgta tggaggtggg tgcgcagaga
     6001 ctgacgaaga ccatgcacac tggcttgaag caagaatgct ccttgacaat atttacctcc
     6061 aagatggcct catagcctcg ctctatcgac ctgaggccga caaagtagca gccattgagg
     6121 gagagttcaa gcttaggacg gagcaaagga agacctttgt ggaactcatg aaaagaggag
     6181 atcttcctgt ttggctggcc tatcaggttg catctgccgg aataacctac acagatagaa
     6241 gatggtgctt tgatggcacg accaacaaca ccataatgga agacagtgtg ccggcagagg
     6301 tgtggaccag acacggagag aaaagagtgc tcaaaccgag gtggatggac gccagagttt
     6361 gttcagatca tgcggccctg aagtcattca aggagtttgc cgctgggaaa agaggagcgg
     6421 cttttggagt gatggaagcc ctgggaacac tgccaggaca catgacagag agattccagg
     6481 aagccattga caacctcgct gtgctcatgc gggcagagac tggaagcagg ccttacaaag
     6541 ccgcggcggc ccaattgccg gagaccctag agaccattat gcttttgggg ttgctgggaa
     6601 cagtctcgct gggaatcttt ttcgtcttga tgaggaacaa gggcataggg aagatgggct
     6661 ttggaatggt gactcttggg gccagcgcat ggctcatgtg gctctcggaa attgagccag
     6721 ccagaattgc atgtgtcctc attgttgtgt tcctattgct ggtggtgctc atacctgagc
     6781 cagaaaagca aagatctccc caggacaacc aaatggcaat catcatcatg gtagcagtag
     6841 gtcttctggg cttgattacc gccaatgaac tcggatggtt ggagagaaca aagagtgacc
     6901 taagccatct aatgggaagg agagaggagg gggcaaccat aggattctca atggacattg
     6961 acctgcggcc agcctcagct tgggccatct atgctgcctt gacaactttc attaccccag
     7021 ctgtccaaca tgcagtgacc acttcataca acaactactc cttaatggcg atggccacgc
     7081 aagctggagt gttgtttggt atgggcaaag ggatgccatt ctacgcatgg gactttggag
     7141 tcccgctgct aatgataggt tgctactcac aattaacacc cctgacccta atagtggcca
     7201 tcattttgct cgtggcgcac tacatgtact tgatcccagg gctgcaggca gcagctgcgc
     7261 gtgctgccca gaagagaacg gcagctggca tcatgaagaa ccctgttgtg gatggaatag
     7321 tggtgactga cattgacaca atgacaattg acccccaagt ggagaaaaag atgggacagg
     7381 tgctactcat agcagtagcc gtctccagcg ccatactgtc gcggaccgcc tgggggtggg
     7441 gggaggctgg ggccctgatc acagccgcaa cttccacttt gtgggaaggc tctccgaaca
     7501 agtactggaa ctcctctaca gccacttcac tgtgtaacat ttttagggga agttacttgg
     7561 ctggagcttc tctaatctac acagtaacaa gaaacgctgg cttggtcaag agacgtgggg
     7621 gtggaacagg agagaccctg ggagagaaat ggaaggcccg cttgaaccag atgtcggccc
     7681 tggagttcta ctcctacaaa aagtcaggca tcaccgaggt gtgcagagaa gaggcccgcc
     7741 gcgccctcaa ggacggtgtg gcaacgggag gccatgctgt gtcccgagga agtgcaaagc
     7801 tgagatggtt ggtggagcgg ggatacctgc agccctatgg aaaggtcatt gatcttggat
     7861 gtggcagagg gggctggagt tactacgccg ccaccatccg caaagttcaa gaagtgaaag
     7921 gatacacaaa aggaggccct ggtcatgaag aacccgtgtt ggtgcaaagc tatgggtgga
     7981 acatagtccg tcttaagagt ggggtggacg tctttcatat ggcggctgag ccgtgtgaca
     8041 cgttgctgtg tgacataggt gagtcatcat ctagtcctga agtggaagaa gcacggacgc
     8101 tcagagtcct ctccatggtg ggggattggc ttgaaaaaag accaggagcc ttttgtataa
     8161 aagtgttgtg cccatacacc agcactatga tggaaaccct ggagcgactg cagcgtaggt
     8221 atgggggagg actggtcaga gtgccactct cccgcaactc tacacatgag atgtactggg
     8281 tctctggagc gaaaagcaac accataaaaa gtgtgtccac cacgagccag ctcctcttgg
     8341 ggcgcatgga cgggcctagg aggccagtga aatatgagga ggatgtgaat ctcggctctg
     8401 gcacgcgggc tgtggtaagc tgcgctgaag ctcccaacat gaagatcatt ggtaaccgca
     8461 ttgaaaggat ccgcagtgag cacgcggaaa cgtggttctt tgacgagaac cacccatata
     8521 ggacatgggc ttaccatgga agctatgagg cccccacaca agggtcagcg tcctctctaa
     8581 taaacggggt tgtcaggctc ctgtcaaaac cctgggatgt ggtgactgga gtcacaggaa
     8641 tagccatgac cgacaccaca ccgtatggtc agcaaagagt tttcaaggaa aaagtggaca
     8701 ctagggtgcc agacccccaa gaaggcactc gtcaggttat gagcatggtc tcttcctggt
     8761 tgtggaaaga gctaggcaaa cacaaacggc cacgagtctg taccaaagaa gagttcatca
     8821 acaaggttcg tagcaatgca gcattagggg caatatttga agaggaaaaa gagtggaaga
     8881 ctgcagtgga agctgtgaac gatccaaggt tctgggctct agtggacaag gaaagagagc
     8941 accacctgag aggagagtgc cagagttgtg tgtacaacat gatgggaaaa agagaaaaga
     9001 aacaagggga atttggaaag gccaagggca gccgcgccat ctggtatatg tggctagggg
     9061 ctagatttct agagttcgaa gcccttggat tcttgaacga ggatcactgg atggggagag
     9121 agaactcagg aggtggtgtt gaagggctgg gattacaaag actcggatat gtcctagaag
     9181 agatgagtcg cataccagga ggaaggatgt atgcagatga cactgctggc tgggacaccc
     9241 gcattagcag gtttgatctg gagaatgaag ctctaatcac caaccaaatg gagaaagggc
     9301 acagggcctt ggcattggcc ataatcaagt acacatacca aaacaaagtg gtaaaggtcc
     9361 ttagaccagc tgaaaaaggg aaaacagtta tggacattat ttcgagacaa gaccaaaggg
     9421 ggagcggaca agttgtcact tacgctctta acacatttac caacctagtg gtgcaactca
     9481 ttcggaatat ggaggctgag gaagttctag agatgcaaga cttgtggctg ctgcggaggt
     9541 cagagaaagt gaccaactgg ttgcagagca acggatggga taggctcaaa cgaatggcag
     9601 tcagtggaga tgattgcgtt gtgaagccaa ttgatgatag gtttgcacat gccctcaggt
     9661 tcttgaatga tatgggaaaa gttaggaagg acacacaaga gtggaaaccc tcaactggat
     9721 gggacaactg ggaagaagtt ccgttttgct cccaccactt caacaagctc catctcaagg
     9781 acgggaggtc cattgtggtt ccctgccgcc accaagatga actgattggc cgggcccgcg
     9841 tctctccagg ggcgggatgg agcatccggg agactgcttg cctagcaaaa tcatatgcgc
     9901 aaatgtggca gctcctttat ttccacagaa gggacctccg actgatggcc aatgccattt
     9961 gttcatctgt gccagttgac tgggttccaa ctgggagaac tacctggtca atccatggaa
    10021 agggagaatg gatgaccact gaagacatgc ttgtggtgtg gaacagagtg tggattgagg
    10081 agaacgacca catggaagac aagaccccag ttgcgaaatg gacagacatt ccctatttgg
    10141 gaaaaaggga agacttgtgg tgtggatctc tcatagggca cagaccgcgc accacctggg
    10201 ctgagaacat taaaaacaca gtcaacatgg tgcgcaggat cataggtgat gaagaaaagt
    10261 acatggacta cctatccacc caagttcgct acttgggtga agaagggtcc acacctggag
    10321 tgctgtaagc accaatctta atgttgtcag gcctgctagt cagccacagc ttggggaaag
    10381 ctgtgcagcc tgtgaccccc ccaggagaag ctgggaaacc aagcctatag tcaggccgag
    10441 aacgccatgg cacggaagaa gccatgctgc ctgtgagccc ctcagaggac actgagtcaa
    10501 aaaaccccac gcgcttggag gcgcaggatg ggaaaagaag gtggcgacct tccccaccct
    10561 tcaatctggg gcctgaactg gagatcagct gtggatctcc agaagaggga ctagtggtta
    10621 gaggagaccc c

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18903	18903	100%	0.0	99%	KX087102.1
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	18903	18903	100%	0.0	99%	KU820897.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18875	18875	100%	0.0	99%	KU647676.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18853	18853	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18848	18848	100%	0.0	99%	KU922923.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18820	18820	100%	0.0	99%	KU991811.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18814	18814	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	18809	18809	100%	0.0	99%	KJ776791.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18798	18798	100%	0.0	99%	KU321639.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18792	18792	100%	0.0	99%	KX051563.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18787	18787	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18787	18787	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18787	18787	100%	0.0	99%	KU365779.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18777	18777	99%	0.0	99%	KU497555.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18770	18770	100%	0.0	99%	KU926309.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18770	18770	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18764	18764	100%	0.0	99%	KU940228.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18764	18764	100%	0.0	99%	KU527068.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18764	18764	100%	0.0	99%	KU365777.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18759	18759	100%	0.0	99%	KU501217.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18759	18759	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18759	18759	100%	0.0	99%	KU312312.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18753	18753	100%	0.0	99%	KU729217.2
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18753	18753	100%	0.0	99%	KU501216.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18748	18748	100%	0.0	99%	KU501215.1
Select seq gb|KX087101.1|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18742	18742	100%	0.0	99%	KX087101.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18737	18737	100%	0.0	99%	KU926310.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18737	18737	100%	0.0	99%	KU820898.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18731	18731	100%	0.0	99%	KU870645.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18726	18726	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18724	18724	100%	0.0	99%	KU853012.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18720	18720	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18720	18720	100%	0.0	99%	KU955590.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18715	18715	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18715	18715	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18698	18698	100%	0.0	99%	KX117076.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18687	18687	100%	0.0	99%	KU963796.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18681	18681	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18681	18681	100%	0.0	99%	KU820899.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18667	18667	99%	0.0	99%	KU940224.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	18559	18559	100%	0.0	99%	KU866423.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18510	18510	100%	0.0	99%	KU744693.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18399	18399	100%	0.0	99%	KU681081.3
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	18041	18041	99%	0.0	98%	JN860885.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	18039	18039	100%	0.0	98%	KU955593.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	18035	18035	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17848	17848	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17651	17651	100%	0.0	98%	KU681082.3
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16393	16393	99%	0.0	95%	HQ234499.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	12584	12584	100%	0.0	89%	KF383115.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	12571	12571	100%	0.0	89%	KU720415.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	12565	12565	99%	0.0	89%	HQ234498.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	12556	12556	100%	0.0	89%	KF268948.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	12554	12554	100%	0.0	89%	KF268949.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	12549	12549	100%	0.0	89%	KF268950.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	12543	12543	100%	0.0	89%	LC002520.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	12543	12543	100%	0.0	89%	KF383119.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	12538	12538	100%	0.0	89%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	12526	12526	100%	0.0	89%	KU955592.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	12510	12510	100%	0.0	89%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	12510	12510	100%	0.0	89%	KU955594.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	12510	12510	100%	0.0	89%	KF383116.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	12504	12504	100%	0.0	89%	KU955591.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	12488	12488	100%	0.0	89%	DQ859059.1
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	12478	12478	99%	0.0	89%	HQ234501.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	12471	12471	100%	0.0	89%	AY632535.2
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	12421	12421	100%	0.0	88%	KF383117.1
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	12360	12360	100%	0.0	88%	KU963574.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	12360	12360	99%	0.0	88%	HQ234500.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	12165	12165	100%	0.0	88%	KF383118.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	12155	12155	97%	0.0	89%	KF383121.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	9703	9703	97%	0.0	84%	KF383120.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	5077	5077	27%	0.0	99%	KU312314.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	5044	5044	27%	0.0	99%	KU312313.1
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	4787	4787	25%	0.0	99%	KU646828.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	4787	4787	25%	0.0	99%	KU646827.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	4543	14544	78%	0.0	98%	KU940227.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	3517	3517	18%	0.0	99%	KU312315.1
Select seq gb|KU740199.1|	Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds	3282	3282	17%	0.0	99%	KU740199.1
Select seq gb|KX101066.1|	Zika virus isolate Bahia01, partial genome	3184	13158	71%	0.0	99%	KX101066.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	3103	12069	65%	0.0	98%	KX101060.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	2754	2754	14%	0.0	99%	KJ634273.1
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	2115	2115	11%	0.0	99%	KU686218.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	2060	2060	11%	0.0	99%	KU179098.1
Select seq gb|KX101061.1|	Zika virus isolate Bahia03, partial genome	1890	13853	74%	0.0	100%	KX101061.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	1881	1881	9%	0.0	99%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	1881	1881	9%	0.0	99%	KX059013.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1792	1792	9%	0.0	99%	KM078936.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1788	1788	9%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1786	1786	9%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1783	1783	9%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1783	1783	9%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1783	1783	9%	0.0	99%	KM078933.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1781	1781	9%	0.0	99%	KM078929.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1639	1639	8%	0.0	99%	KJ873160.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	1622	9123	48%	0.0	99%	KX101064.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1452	1452	7%	0.0	99%	KJ873161.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1408	1408	7%	0.0	99%	KM851039.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1384	1384	7%	0.0	99%	KU985087.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1378	1378	7%	0.0	99%	KU556802.1

[niman]

Map Update

https://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en

 

[niman]

Updated matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-Vx/2015, complete genome	18969	18969	100%	0.0	100%	KX156776.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-Vx/2015, complete genome	18953	18953	100%	0.0	99%	KX156774.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-Vx/2015, complete genome	18947	18947	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18903	18903	100%	0.0	99%	KX087102.1
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	18903	18903	100%	0.0	99%	KU820897.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18875	18875	100%	0.0	99%	KU647676.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18853	18853	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18848	18848	100%	0.0	99%	KU922923.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18820	18820	100%	0.0	99%	KU991811.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18814	18814	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	18809	18809	100%	0.0	99%	KJ776791.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18798	18798	100%	0.0	99%	KU321639.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18792	18792	100%	0.0	99%	KX051563.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18787	18787	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18787	18787	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18787	18787	100%	0.0	99%	KU365779.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18777	18777	99%	0.0	99%	KU497555.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18770	18770	100%	0.0	99%	KU926309.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18770	18770	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18764	18764	100%	0.0	99%	KU940228.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18764	18764	100%	0.0	99%	KU527068.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18764	18764	100%	0.0	99%	KU365777.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18759	18759	100%	0.0	99%	KU501217.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18759	18759	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18759	18759	100%	0.0	99%	KU312312.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18753	18753	100%	0.0	99%	KU729217.2
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18753	18753	100%	0.0	99%	KU501216.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18748	18748	100%	0.0	99%	KU937936.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18748	18748	100%	0.0	99%	KU501215.1
Select seq gb|KX087101.1|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18742	18742	100%	0.0	99%	KX087101.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18737	18737	100%	0.0	99%	KU926310.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18737	18737	100%	0.0	99%	KU820898.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18731	18731	100%	0.0	99%	KU870645.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18726	18726	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18724	18724	100%	0.0	99%	KU853012.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18720	18720	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18720	18720	100%	0.0	99%	KU955590.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18715	18715	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18715	18715	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18698	18698	100%	0.0	99%	KX117076.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18687	18687	100%	0.0	99%	KU963796.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18681	18681	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18681	18681	100%	0.0	99%	KU820899.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18667	18667	99%	0.0	99%	KU940224.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	18559	18559	100%	0.0	99%	KU866423.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18510	18510	100%	0.0	99%	KU744693.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18399	18399	100%	0.0	99%	KU681081.3
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	18041	18041	99%	0.0	98%	JN860885.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	18039	18039	100%	0.0	98%	KU955593.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	18035	18035	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17848	17848	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17651	17651	100%	0.0	98%	KU681082.3
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16393	16393	99%	0.0	95%	HQ234499.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	12584	12584	100%	0.0	89%	KF383115.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	12571	12571	100%	0.0	89%	KU720415.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	12565	12565	99%	0.0	89%	HQ234498.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	12556	12556	100%	0.0	89%	KF268948.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	12554	12554	100%	0.0	89%	KF268949.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	12549	12549	100%	0.0	89%	KF268950.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	12543	12543	100%	0.0	89%	LC002520.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	12543	12543	100%	0.0	89%	KF383119.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	12538	12538	100%	0.0	89%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	12526	12526	100%	0.0	89%	KU955592.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	12510	12510	100%	0.0	89%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	12510	12510	100%	0.0	89%	KU955594.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	12510	12510	100%	0.0	89%	KF383116.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	12504	12504	100%	0.0	89%	KU955591.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	12488	12488	100%	0.0	89%	DQ859059.1
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	12478	12478	99%	0.0	89%	HQ234501.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	12471	12471	100%	0.0	89%	AY632535.2
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	12421	12421	100%	0.0	88%	KF383117.1
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	12360	12360	100%	0.0	88%	KU963574.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	12360	12360	99%	0.0	88%	HQ234500.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	12165	12165	100%	0.0	88%	KF383118.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	12155	12155	97%	0.0	89%	KF383121.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	9703	9703	97%	0.0	84%	KF383120.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	5077	5077	27%	0.0	99%	KU312314.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	5044	5044	27%	0.0	99%	KU312313.1
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	4787	4787	25%	0.0	99%	KU646828.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	4787	4787	25%	0.0	99%	KU646827.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	4543	14544	78%	0.0	98%	KU940227.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	3517	3517	18%	0.0	99%	KU312315.1
Select seq gb|KU740199.1|	Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds	3282	3282	17%	0.0	99%	KU740199.1
Select seq gb|KX101066.1|	Zika virus isolate Bahia01, partial genome	3184	13158	71%	0.0	99%	KX101066.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	3103	12069	65%	0.0	98%	KX101060.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	2754	2754	14%	0.0	99%	KJ634273.1
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	2115	2115	11%	0.0	99%	KU686218.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	2060	2060	11%	0.0	99%	KU179098.1
Select seq gb|KX101061.1|	Zika virus isolate Bahia03, partial genome	1890	13853	74%	0.0	100%	KX101061.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	1881	1881	9%	0.0	99%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	1881	1881	9%	0.0	99%	KX059013.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1792	1792	9%	0.0	99%	KM078936.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1788	1788	9%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1786	1786	9%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1783	1783	9%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1783	1783	9%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1783	1783	9%	0.0	99%	KM078933.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1781	1781	9%	0.0	99%	KM078929.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1639	1639	8%	0.0	99%	KJ873160.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	1622	9123	48%	0.0	99%	KX101064.1

[niman]

Update

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-Vx/2015, complete genome	18525	18525	100%	0.0	100%	KX156775.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-Vx/2015, complete genome	18507	18507	100%	0.0	99%	KX156776.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-Vx/2015, complete genome	18502	18502	100%	0.0	99%	KX156774.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18462	18462	100%	0.0	99%	KX087102.1
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	18462	18462	100%	0.0	99%	KU820897.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18438	18438	100%	0.0	99%	KU647676.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18420	18420	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18417	18417	100%	0.0	99%	KU922923.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18393	18393	100%	0.0	99%	KU991811.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18390	18390	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	18384	18384	100%	0.0	99%	KJ776791.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18375	18375	100%	0.0	99%	KU321639.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18372	18372	100%	0.0	99%	KX051563.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18366	18366	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18366	18366	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18366	18366	100%	0.0	99%	KU365779.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18359	18359	99%	0.0	99%	KU497555.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18354	18354	100%	0.0	99%	KU926309.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18348	18348	100%	0.0	99%	KU940228.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU365777.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU501217.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU312312.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU729217.2
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18339	18339	100%	0.0	99%	KU527068.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU501216.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KU937936.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18336	18336	100%	0.0	99%	KU501215.1
Select seq gb|KX087101.1|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18330	18330	100%	0.0	99%	KX087101.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18327	18327	100%	0.0	99%	KU926310.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU820898.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18321	18321	100%	0.0	99%	KU870645.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18318	18318	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18316	18316	100%	0.0	99%	KU853012.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU955590.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18294	18294	100%	0.0	99%	KX117076.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KU963796.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18282	18282	100%	0.0	99%	KU820899.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18254	18254	99%	0.0	99%	KU940224.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	18182	18182	100%	0.0	99%	KU866423.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18141	18141	100%	0.0	99%	KU744693.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18051	18051	100%	0.0	99%	KU681081.3
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17759	17759	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17757	17757	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17715	17715	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17598	17598	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17447	17447	100%	0.0	98%	KU681082.3
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16424	16424	99%	0.0	95%	HQ234499.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13299	13299	100%	0.0	89%	KU720415.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	13293	13293	100%	0.0	89%	KF383115.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	13293	13293	100%	0.0	89%	KF268949.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	13293	13293	99%	0.0	89%	HQ234498.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	13284	13284	100%	0.0	89%	KF268948.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	13281	13281	100%	0.0	89%	KF383119.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	13277	13277	100%	0.0	89%	LC002520.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	13277	13277	100%	0.0	89%	KF268950.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	13272	13272	100%	0.0	89%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	13263	13263	100%	0.0	89%	KU955592.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	13261	13261	100%	0.0	89%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	13261	13261	100%	0.0	89%	KU955594.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13261	13261	100%	0.0	89%	DQ859059.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	13245	13245	100%	0.0	89%	KU955591.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	13239	13239	100%	0.0	89%	KF383116.1
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	13223	13223	99%	0.0	89%	HQ234501.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	13218	13218	100%	0.0	89%	AY632535.2
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	13169	13169	100%	0.0	88%	KF383117.1
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	13149	13257	100%	0.0	88%	KU963574.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	13147	13147	99%	0.0	88%	HQ234500.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	12954	13022	100%	0.0	88%	KF383118.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	12879	12879	97%	0.0	89%	KF383121.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	10859	10859	97%	0.0	84%	KF383120.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	5038	14422	87%	0.0	95%	KU940227.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	4958	4958	27%	0.0	99%	KU312314.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	4931	4931	27%	0.0	99%	KU312313.1
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	4677	4677	25%	0.0	99%	KU646828.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	4677	4677	25%	0.0	99%	KU646827.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	4226	13301	75%	0.0	95%	KX101060.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	3434	3434	18%	0.0	99%	KU312315.1
Select seq gb|KU740199.1|	Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds	3214	3214	17%	0.0	99%	KU740199.1
Select seq gb|KX101066.1|	Zika virus isolate Bahia01, partial genome	3119	13101	74%	0.0	99%	KX101066.1
Select seq gb|DQ859064.1|	Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds	2856	4173	95%	0.0	71%	DQ859064.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	2695	2695	14%	0.0	99%	KJ634273.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	2253	10770	65%	0.0	92%	KX101064.1
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	2069	2069	11%	0.0	99%	KU686218.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	2021	2021	11%	0.0	99%	KU179098.1
Select seq gb|KX101061.1|	Zika virus isolate Bahia03, partial genome	1846	13893	78%	0.0	100%	KX101061.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	1838	1838	9%	0.0	99%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	1838	1838	9%	0.0	99%	KX059013.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1752	1752	9%	0.0	99%	KM078936.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1748	1748	9%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1746	1746	9%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078933.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1743	1743	9%	0.0	99%	KM078929.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1602	1602	8%	0.0	99%	KJ873160.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1420	1420	7%	0.0	99%	KJ873161.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1382	1382	7%	0.0	99%	KM851039.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1353	1353	7%	0.0	99%	KU985087.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1346	1346	7%	0.0	99%	KU556802.1
Select seq gb|KM851038.1|	Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds	1346	1346	7%	0.0	98%	KM851038.1
Select seq gb|AF013415.1|	Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds	1315	1315	10%	0.0	88%	AF013415.1
Select seq gb|KT200609.1|	Zika virus isolate BR/949/15 NS5 gene, partial cds	1245	1245	6%	0.0	99%	KT200609.1
Select seq gb|KU232300.1|	Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds	1240	1240	6%	0.0	99%	KU232300.1
Select seq gb|KU232290.1|	Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds	1231	1231	6%	0.0	99%	KU232290.1
Select seq gb|KU232297.1|	Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds	1229	1229	6%	0.0	99%	KU232297.1
Select seq gb|KU232294.1|	Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds	1220	1220	6%	0.0	99%	KU232294.1
Select seq gb|KU232292.1|	Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds	1218	1218	6%	0.0	99%	KU232292.1
Select seq gb|KU232298.1|	Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds	1214	1214	6%	0.0	99%	KU232298.1
Select seq gb|KU232296.1|	Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds	1211	1211	6%	0.0	99%	KU232296.1
Select seq gb|KU232293.1|	Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds	1211	1211	6%	0.0	99%	KU232293.1
Select seq gb|KU232295.1|	Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds	1205	1205	6%	0.0	99%	KU232295.1
Select seq gb|KU232288.1|	Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds	1195	1195	6%	0.0	99%	KU232288.1
Select seq gb|KU232289.1|	Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds	1191	1191	6%	0.0	99%	KU232289.1
Select seq gb|KU232299.1|	Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds	1187	1187	6%	0.0	99%	KU232299.1
Select seq gb|KU232291.1|	Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds	1186	1186	6%	0.0	99%	KU232291.1
Select seq gb|KX101065.1|	Zika virus isolate Bahia15, partial genome	1184	7769	46%	0.0	99%	KX101065.1
Select seq gb|KX101063.1|	Zika virus isolate Bahia05, partial genome	1180	7433	42%	0.0	99%	KX101063.1
Select seq gb|KU758878.1|	Zika virus polyprotein gene, partial cds	1130	1130	6%	0.0	98%	KU758878.1
Select seq gb|KF270886.1|	Zika virus strain CCB-870 envelope glycoprotein gene, partial cds	1072	1072	8%	0.0	88%	KF270886.1
Select seq gb|KX101062.1|	Zika virus isolate Bahia04, partial genome	1054	7321	41%	0.0	97%	KX101062.1
Select seq gb|KU867812.1|	Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds	1018	1018	5%	0.0	100%	KU867812.1
Select seq gb|AF372422.1|AF372422	Zika virus envelope protein (E) gene, partial cds	1014	1014	8%	0.0	86%	AF372422.1
Select seq gb|KF270887.1|	Zika virus strain CCB-870 NS3 protein gene, partial cds	1000	1000	7%	0.0	89%	KF270887.1
Select seq gb|EF158064.1|	St. Louis encephalitis virus strain GML 902612 polyprotein gene, partial cds	984	2001	64%	0.0	70%	EF158064.1
Select seq gb|KF383022.1|	Zika virus strain ArD127988 envelope protein gene, partial cds	975	975	7%	0.0	89%	KF383022.1
Select seq gb|KF383026.1|	Zika virus strain ArD127994 envelope protein gene, partial cds	971	971	7%	0.0	89%	KF383026.1
Select seq gb|EU303241.1|	Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds	967	967	7%	0.0	88%	EU303241.1
Select seq gb|KF383032.1|	Zika virus strain ArD30101 envelope protein gene, partial cds	962	962	7%	0.0	88%	KF383032.1
Select seq gb|KF383037.1|	Zika virus strain ArA506 envelope protein gene, partial cds	957	957	7%	0.0	88%	KF383037.1
Select seq gb|KF383034.1|	Zika virus strain ArD30156 envelope protein gene, partial cds	957	957	7%	0.0	88%	KF383034.1
Select seq gb|KF383029.1|	Zika virus strain ArD165522 envelope protein gene, partial cds	957	957	7%	0.0	88%	KF383029.1
Select seq gb|KF383033.1|	Zika virus strain AnD30332 envelope protein gene, partial cds	953	953	7%	0.0	88%	KF383033.1
Select seq gb|KF383036.1|	Zika virus strain ArA975 envelope protein gene, partial cds	951	951	7%	0.0	88%	KF383036.1
Select seq gb|KF383028.1|	Zika virus strain ArD165531 envelope protein gene, partial cds	935	935	7%	0.0	88%	KF383028.1
Select seq gb|KF383039.1|	Zika virus strain HD78788 envelope protein gene, partial cds	933	933	7%	0.0	88%	KF383039.1
Select seq gb|KF383031.1|	Zika virus strain ArD9957 envelope protein gene, partial cds	930	930	7%	0.0	87%	KF383031.1
Select seq gb|KF383038.1|	Zika virus strain ArA986 envelope protein gene, partial cds	924	924	7%	0.0	87%	KF383038.1
Select seq gb|EU566860.1|	St. Louis encephalitis virus strain Hubbard, complete genome	921	2018	57%	0.0	69%	EU566860.1
Select seq gb|KT823415.1|	St. Louis encephalitis virus strain RT 121B polyprotein gene, complete cds	917	1903	65%	0.0	69%	KT823415.1
Select seq gb|FJ753286.2|	St. Louis encephalitis virus strain CbaAr-4005, complete genome	917	1923	65%	0.0	69%	FJ753286.2
Select seq gb|KF383046.1|	Zika virus strain ArA982 envelope protein gene, partial cds	915	915	7%	0.0	87%	KF383046.1
Select seq gb|KF383103.1|	Zika virus strain ArA986 nonstructural protein 5 gene, partial cds	906	906	6%	0.0	88%	KF383103.1
Select seq gb|KF383086.1|	Zika virus strain ArA975 nonstructural protein 5 gene, partial cds	906	906	6%	0.0	88%	KF383086.1
Select seq gb|KF383045.1|	Zika virus strain ArA27106 envelope protein gene, partial cds	902	902	7%	0.0	87%	KF383045.1
Select seq gb|KF383043.1|	Zika virus strain ArA27443 envelope protein gene, partial cds	897	897	7%	0.0	87%	KF383043.1
Select seq gb|KF383035.1|	Zika virus strain MR1429 envelope protein gene, partial cds	897	897	7%	0.0	86%	KF383035.1
Select seq gb|KF383041.1|	Zika virus strain ArA27290 envelope protein gene, partial cds	893	893	7%	0.0	86%	KF383041.1
Select seq gb|KF383042.1|	Zika virus strain ArA27096 envelope protein gene, partial cds	888	888	7%	0.0	86%	KF383042.1
Select seq gb|EF158069.1|	St. Louis encephalitis virus strain 72 V 4749 polyprotein gene, partial cds	886	1971	67%	0.0	69%	EF158069.1
Select seq gb|FJ753287.2|	St. Louis encephalitis virus strain 79V-2533, complete genome	884	1819	63%	0.0	69%	FJ753287.2
Select seq gb|KF383104.1|	Zika virus strain ArA982 nonstructural protein 5 gene, partial cds	874	874	6%	0.0	87%	KF383104.1
Select seq gb|KF383085.1|	Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds	874	874	6%	0.0	87%	KF383085.1
Select seq gb|KF383106.1|	Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds	870	870	6%	0.0	87%	KF383106.1
Select seq gb|KU978616.1|	Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds	868	868	4%	0.0	99%	KU978616.1
Select seq gb|EF158063.1|	St. Louis encephalitis virus strain CorAn 9124 polyprotein gene, partial cds	868	1961	60%	0.0	69%	EF158063.1
Select seq gb|KF383114.1|	Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds	865	865	6%	0.0	87%	KF383114.1
Select seq gb|KF383107.1|	Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds	865	865	6%	0.0	87%	KF383107.1
Select seq gb|KF383088.1|	Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds	865	865	6%	0.0	87%	KF383088.1
Select seq gb|KF383040.1|	Zika virus strain ArA27101 envelope protein gene, partial cds	863	863	7%	0.0	85%	KF383040.1
Select seq gb|KF383087.1|	Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds	861	861	6%	0.0	87%	KF383087.1
Select seq gb|KX101067.1|	Zika virus isolate Bahia12, partial genome	857	8490	51%	0.0	89%	KX101067.1
Select seq gb|KF383089.1|	Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds	847	847	6%	0.0	87%	KF383089.1
Select seq gb|KF383101.1|	Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds	843	843	6%	0.0	86%	KF383101.1
Select seq gb|KF383097.1|	Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds	843	843	6%	0.0	86%	KF383097.1
Select seq gb|KF383099.1|	Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds	838	838	6%	0.0	86%	KF383099.1
Select seq gb|KF383098.1|	Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds	834	834	6%	0.0	86%	KF383098.1
Select seq gb|KU872850.1|	Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds	829	829	4%	0.0	100%	KU872850.1
Select seq dbj|AB908162.1|	Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID	825	825	4%	0.0	99%	AB908162.1
Select seq gb|KC754954.1|	Usutu virus isolate ArD19848, complete genome	809	1555	60%	0.0	68%	KC754954.1
Select seq gb|KF383084.1|	Zika virus strain HD78788 nonstructural protein 5 gene, partial cds	807	807	6%	0.0	85%	KF383084.1
Select seq gb|KF383113.1|	Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds	801	801	6%	0.0	85%	KF383113.1
Select seq gb|HM147824.1|	West Nile virus from Democratic Republic of the Congo, complete genome	783	1706	53%	0.0	68%	HM147824.1
Select seq gb|KC754958.1|	Usutu virus isolate ArB1803, complete genome	782	1867	54%	0.0	68%	KC754958.1
Select seq gb|EF429199.1|	West Nile virus SA381/00, complete genome	765	1624	57%	0.0	68%	EF429199.1
Select seq gb|DQ176636.2|	West Nile virus strain Madagascar-AnMg798, complete genome	756	1527	48%	0.0	68%	DQ176636.2
Select seq gb|KM203863.1|	West Nile virus strain Cz 13-502, complete genome	742	1668	54%	0.0	68%	KM203863.1
Select seq gb|KM203860.1|	West Nile virus strain Cz 13-104, complete genome	729	1643	54%	0.0	67%	KM203860.1
Select seq gb|KF383017.1|	Zika virus strain ArD149938 envelope protein gene, partial cds	713	713	7%	0.0	81%	KF383017.1
Select seq gb|KF383016.1|	Zika virus strain ArD147917 envelope protein gene, partial cds	708	708	7%	0.0	81%	KF383016.1
Select seq gb|KF383015.1|	Zika virus strain ArD149810 envelope protein gene, partial cds	708	708	7%	0.0	81%	KF383015.1
Select seq gb|KF383021.1|	Zika virus strain ArD132912 envelope protein gene, partial cds	702	702	7%	0.0	81%	KF383021.1
Select seq gb|KF383020.1|	Zika virus strain ArA1465 envelope protein gene, partial cds	702	702	7%	0.0	81%	KF383020.1
Select seq gb|KF258813.1|	Zika virus isolate Java non-structural protein 5 mRNA, partial cds	693	693	3%	0.0	98%	KF258813.1
Select seq gb|KF383019.1|	Zika virus strain ArD132915 envelope protein gene, partial cds	686	686	7%	0.0	80%	KF383019.1
Select seq gb|JF262780.1|	Dengue virus 4 isolate P73-1120, complete genome	675	1750	50%	0.0	70%	JF262780.1
Select seq gb|JF262779.1|	Dengue virus 4 isolate P75-514, complete genome	675	1750	50%	0.0	70%	JF262779.1
Select seq gb|EF457906.1|	Dengue virus type 4 isolate P75-215, complete genome	672	1732	50%	0.0	69%	EF457906.1
Select seq gb|KF383092.1|	Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds	664	664	6%	0.0	81%	KF383092.1
Select seq gb|KF383093.1|	Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds	663	663	6%	0.0	81%	KF383093.1
Select seq gb|KF383095.1|	Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds	657	657	6%	0.0	81%	KF383095.1
Select seq gb|KF383091.1|	Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds	654	654	6%	0.0	80%	KF383091.1
Select seq gb|KU985088.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds	645	645	3%	8e-180	99%	KU985088.1
Select seq gb|FJ432747.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1832/2007, complete genome	645	1600	44%	8e-180	69%	FJ432747.1
Select seq gb|FJ410232.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1890/2007, complete genome	645	1600	44%	8e-180	69%	FJ410232.1
Select seq gb|FJ410201.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1806/2007, complete genome	639	1590	44%	3e-178	69%	FJ410201.1
Select seq gb|JQ686088.2|	Dengue virus 2 strain JHA1, partial genome	637	1511	60%	1e-177	69%	JQ686088.2
Select seq gb|JN697058.1|	Dengue virus 1 isolate DH/S1/05/152, complete genome	636	1613	46%	4e-177	69%	JN697058.1
Select seq gb|FJ882536.1|	Dengue virus 1 isolate DENV-1/VN/BID-V2711/2006, complete genome	636	1586	44%	4e-177	69%	FJ882536.1
Select seq gb|FJ410257.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1925/2008, complete genome	636	1532	43%	4e-177	69%	FJ410257.1
Select seq gb|FJ410234.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1896/2007, complete genome	636	1573	43%	4e-177	69%	FJ410234.1
Select seq emb|HG316482.1|	Dengue virus type 1 complete genome, isolate KDH0030A	634	1593	51%	1e-176	69%	HG316482.1
Select seq gb|KX062045.1|	Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds	630	630	3%	2e-175	100%	KX062045.1
Select seq gb|FJ906728.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1852/2007, complete genome	630	1562	44%	2e-175	69%	FJ906728.1
Select seq gb|FJ432734.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1792/2007, complete genome	630	1572	44%	2e-175	69%	FJ432734.1
Select seq gb|JQ048541.1|	Dengue virus 1 isolate DG14, complete genome	627	1602	49%	2e-174	69%	JQ048541.1
Select seq gb|GU131725.1|	Dengue virus 1 isolate DENV-1/VN/BID-V3903/2008, complete genome	627	1572	44%	2e-174	69%	GU131725.1
Select seq gb|FJ410250.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1917/2007, complete genome	627	1575	46%	2e-174	69%	FJ410250.1
Select seq gb|FJ410211.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1830/2007, complete genome	627	1581	44%	2e-174	69%	FJ410211.1
Select seq gb|FJ410204.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1809/2007, complete genome	627	1575	44%	2e-174	69%	FJ410204.1
Select seq gb|FJ410203.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1808/2007, complete genome	627	1575	44%	2e-174	69%	FJ410203.1
Select seq gb|KX062044.1|	Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds	625	625	3%	7e-174	99%	KX062044.1
Select seq emb|FM210240.2|	Dengue virus 2 isolate MD1273, complete genome	614	1418	59%	1e-170	69%	FM210240.2
Select seq gb|DQ181799.1|	Dengue virus type 2 strain ThD2_0017_98, complete genome	612	1644	53%	5e-170	69%	DQ181799.1
Select seq gb|AF100462.1|AF100462	Dengue virus type 2 strain C0390 polyprotein gene, complete cds	607	1613	52%	2e-168	69%	AF100462.1
Select seq gb|GU131894.1|	Dengue virus 1 isolate DENV-1/IPC/BID-V3786/2008, complete genome	600	1450	42%	3e-166	68%	GU131894.1
Select seq gb|GQ868633.1|	Dengue virus 1 isolate DENV-1/IPC/BID-V3793/2008, complete genome	600	1454	42%	3e-166	68%	GQ868633.1
Select seq gb|FJ639711.1|	Dengue virus 2 isolate DENV-2/KH/BID-V2045/2005, complete genome	598	1409	58%	1e-165	69%	FJ639711.1
Select seq gb|FJ639710.1|	Dengue virus 2 isolate DENV-2/KH/BID-V2044/2005, complete genome	598	1409	58%	1e-165	69%	FJ639710.1
Select seq gb|KJ918750.1|	Dengue virus 2 isolate P23085 INDI-60, complete genome	596	1649	47%	3e-165	69%	KJ918750.1
Select seq gb|EU529701.1|	Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome	589	1676	48%	5e-163	68%	EU529701.1
Select seq gb|KR815989.1|	Zika virus isolate 15095 envelope protein gene, partial cds	587	587	3%	2e-162	99%	KR815989.1
Select seq gb|JN819408.1|	Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome	585	1595	48%	6e-162	69%	JN819408.1
Select seq gb|GU131887.1|	Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome	581	1537	42%	8e-161	68%	GU131887.1
Select seq gb|EU482580.1|	Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome	580	1658	48%	3e-160	68%	EU482580.1
Select seq gb|FJ850050.1|	Dengue virus 2 isolate DENV-2/NI/BID-V2356/2007, complete genome	576	1618	49%	3e-159	68%	FJ850050.1
Select seq gb|EU569702.1|	Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome	576	1632	50%	3e-159	68%	EU569702.1
Select seq gb|EU596483.1|	Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome	572	1643	50%	4e-158	68%	EU596483.1
Select seq gb|JN819407.1|	Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome	571	1611	45%	1e-157	68%	JN819407.1
Select seq gb|FJ898466.1|	Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome	567	1584	49%	2e-156	68%	FJ898466.1
Select seq gb|KR816334.1|	Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds	545	545	2%	6e-150	99%	KR816334.1
Select seq gb|KR816333.1|	Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds	544	544	2%	2e-149	99%	KR816333.1
Select seq gb|KR816335.1|	Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds	540	540	2%	2e-148	99%	KR816335.1
Select seq gb|JQ922552.1|	Dengue virus 2 isolate DENV-2/IND/P23085/1960, complete genome	536	1609	46%	3e-147	68%	JQ922552.1
Select seq gb|KM212966.1|	Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds	529	529	2%	4e-145	99%	KM212966.1
Select seq gb|KM212965.1|	Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds	526	526	2%	5e-144	99%	KM212965.1
Select seq gb|KM212964.1|	Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds	526	526	2%	5e-144	99%	KM212964.1
Select seq gb|KM212963.1|	Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds	526	526	2%	5e-144	99%	KM212963.1
Select seq gb|KJ579441.1|	Zika virus isolate PF13-CP221013c polyprotein gene, partial cds	502	502	2%	6e-137	99%	KJ579441.1
Select seq gb|KJ680134.1|	Zika virus strain PF13-091213-121 polyprotein gene, partial cds	499	499	2%	7e-136	99%	KJ680134.1
Select seq gb|JQ922553.1|	Dengue virus 2 isolate DENV-2/IND/803347/1980, complete genome	430	1456	46%	3e-115	67%	JQ922553.1
Select seq gb|KU954085.1|	Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds	421	421	2%	2e-112	99%	KU954085.1

[niman]

Update

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18525	18525	100%	0.0	100%	KX156774.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18511	18511	100%	0.0	99%	KX156776.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18502	18502	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18465	18465	100%	0.0	99%	KX087102.1
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	18465	18465	100%	0.0	99%	KU820897.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18444	18444	100%	0.0	99%	KU647676.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18426	18426	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18420	18420	100%	0.0	99%	KU922923.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18399	18399	100%	0.0	99%	KU991811.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18393	18393	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	18390	18390	100%	0.0	99%	KJ776791.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18381	18381	100%	0.0	99%	KU321639.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18375	18375	100%	0.0	99%	KX051563.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18372	18372	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18372	18372	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18372	18372	100%	0.0	99%	KU365779.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18366	18366	100%	0.0	99%	KU926309.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18363	18363	99%	0.0	99%	KU497555.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18354	18354	100%	0.0	99%	KU940228.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KU729217.2
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KU365777.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU501217.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU312312.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18345	18345	100%	0.0	99%	KU527068.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU501216.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU937936.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18339	18339	100%	0.0	99%	KU501215.1
Select seq gb|KX087101.1|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18336	18336	100%	0.0	99%	KX087101.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18330	18330	100%	0.0	99%	KU926310.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU820898.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18327	18327	100%	0.0	99%	KU870645.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18321	18321	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18321	18321	100%	0.0	99%	KU853012.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU955590.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18300	18300	100%	0.0	99%	KX117076.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU963796.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18285	18285	100%	0.0	99%	KU820899.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18258	18258	99%	0.0	99%	KU940224.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	18186	18186	100%	0.0	99%	KU866423.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18146	18146	100%	0.0	99%	KU744693.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18056	18056	100%	0.0	99%	KU681081.3
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17762	17762	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17762	17762	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17721	17721	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17603	17603	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17447	17447	100%	0.0	98%	KU681082.3
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16420	16420	99%	0.0	95%	HQ234499.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	13306	13306	100%	0.0	89%	KF268949.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	13302	13302	100%	0.0	89%	KF383115.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	13297	13297	100%	0.0	89%	KF268948.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13295	13295	100%	0.0	89%	KU720415.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	13290	13290	100%	0.0	89%	KF268950.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	13290	13290	99%	0.0	89%	HQ234498.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	13286	13286	100%	0.0	89%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	13277	13277	100%	0.0	89%	KU955592.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	13277	13277	100%	0.0	89%	KF383119.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	13272	13272	100%	0.0	89%	LC002520.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	13266	13266	100%	0.0	89%	DQ859059.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	13259	13259	100%	0.0	89%	KU955591.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	13256	13256	100%	0.0	89%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	13256	13256	100%	0.0	89%	KU955594.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	13252	13252	100%	0.0	89%	KF383116.1
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	13236	13236	99%	0.0	89%	HQ234501.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	13214	13214	100%	0.0	89%	AY632535.2
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	13178	13178	100%	0.0	88%	KF383117.1
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	13153	13260	100%	0.0	88%	KU963574.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	13153	13153	99%	0.0	88%	HQ234500.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	12949	13017	100%	0.0	88%	KF383118.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	12873	12873	97%	0.0	89%	KF383121.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	10862	10862	97%	0.0	84%	KF383120.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	5034	14427	87%	0.0	95%	KU940227.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	4962	4962	27%	0.0	99%	KU312314.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	4935	4935	27%	0.0	99%	KU312313.1
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	4677	4677	25%	0.0	99%	KU646828.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	4677	4677	25%	0.0	99%	KU646827.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	4226	13313	75%	0.0	95%	KX101060.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	3434	3434	18%	0.0	99%	KU312315.1
Select seq gb|KU740199.1|	Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds	3211	3211	17%	0.0	99%	KU740199.1
Select seq gb|KX101066.1|	Zika virus isolate Bahia01, partial genome	3119	13104	74%	0.0	99%	KX101066.1
Select seq gb|DQ859064.1|	Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds	2852	4179	95%	0.0	71%	DQ859064.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	2695	2695	14%	0.0	99%	KJ634273.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	2250	10777	65%	0.0	92%	KX101064.1
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	2075	2075	11%	0.0	99%	KU686218.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	2021	2021	11%	0.0	99%	KU179098.1
Select seq gb|KX101061.1|	Zika virus isolate Bahia03, partial genome	1846	13893	78%	0.0	100%	KX101061.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	1838	1838	9%	0.0	99%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	1838	1838	9%	0.0	99%	KX059013.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	1752	1752	9%	0.0	99%	KM078936.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	1748	1748	9%	0.0	99%	KM078961.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	1746	1746	9%	0.0	99%	KM078930.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078971.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078970.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	1745	1745	9%	0.0	99%	KM078933.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	1743	1743	9%	0.0	99%	KM078929.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	1602	1602	8%	0.0	99%	KJ873160.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	1420	1420	7%	0.0	99%	KJ873161.1
Select seq gb|KM851039.1|	Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds	1382	1382	7%	0.0	99%	KM851039.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	1353	1353	7%	0.0	99%	KU985087.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	1346	1346	7%	0.0	99%	KU556802.1
Select seq gb|KM851038.1|	Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds	1346	1346	7%	0.0	98%	KM851038.1
Select seq gb|AF013415.1|	Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds	1315	1315	10%	0.0	88%	AF013415.1
Select seq gb|KT200609.1|	Zika virus isolate BR/949/15 NS5 gene, partial cds	1245	1245	6%	0.0	99%	KT200609.1
Select seq gb|KU232300.1|	Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds	1240	1240	6%	0.0	99%	KU232300.1
Select seq gb|KU232290.1|	Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds	1231	1231	6%	0.0	99%	KU232290.1
Select seq gb|KU232297.1|	Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds	1229	1229	6%	0.0	99%	KU232297.1
Select seq gb|KU232294.1|	Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds	1220	1220	6%	0.0	99%	KU232294.1
Select seq gb|KU232292.1|	Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds	1218	1218	6%	0.0	99%	KU232292.1
Select seq gb|KU232298.1|	Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds	1214	1214	6%	0.0	99%	KU232298.1
Select seq gb|KU232296.1|	Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds	1211	1211	6%	0.0	99%	KU232296.1
Select seq gb|KU232293.1|	Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds	1211	1211	6%	0.0	99%	KU232293.1
Select seq gb|KU232295.1|	Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds	1205	1205	6%	0.0	99%	KU232295.1
Select seq gb|KU232288.1|	Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds	1195	1195	6%	0.0	99%	KU232288.1
Select seq gb|KU232289.1|	Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds	1191	1191	6%	0.0	99%	KU232289.1
Select seq gb|KU232299.1|	Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds	1187	1187	6%	0.0	99%	KU232299.1
Select seq gb|KU232291.1|	Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds	1186	1186	6%	0.0	99%	KU232291.1
Select seq gb|KX101065.1|	Zika virus isolate Bahia15, partial genome	1184	7766	46%	0.0	99%	KX101065.1
Select seq gb|KX101063.1|	Zika virus isolate Bahia05, partial genome	1177	7429	42%	0.0	99%	KX101063.1
Select seq gb|KU758878.1|	Zika virus polyprotein gene, partial cds	1133	1133	6%	0.0	99%	KU758878.1
Select seq gb|KF270886.1|	Zika virus strain CCB-870 envelope glycoprotein gene, partial cds	1072	1072	8%	0.0	88%	KF270886.1
Select seq gb|KX101062.1|	Zika virus isolate Bahia04, partial genome	1054	7321	41%	0.0	97%	KX101062.1
Select seq gb|KU867812.1|	Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds	1018	1018	5%	0.0	100%	KU867812.1
Select seq gb|AF372422.1|AF372422	Zika virus envelope protein (E) gene, partial cds	1014	1014	8%	0.0	86%	AF372422.1
Select seq gb|KF270887.1|	Zika virus strain CCB-870 NS3 protein gene, partial cds	1000	1000	7%	0.0	89%	KF270887.1
Select seq gb|EF158064.1|	St. Louis encephalitis virus strain GML 902612 polyprotein gene, partial cds	984	2004	64%	0.0	70%	EF158064.1
Select seq gb|KF383022.1|	Zika virus strain ArD127988 envelope protein gene, partial cds	975	975	7%	0.0	89%	KF383022.1
Select seq gb|KF383026.1|	Zika virus strain ArD127994 envelope protein gene, partial cds	971	971	7%	0.0	89%	KF383026.1
Select seq gb|EU303241.1|	Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds	967	967	7%	0.0	88%	EU303241.1
Select seq gb|KF383032.1|	Zika virus strain ArD30101 envelope protein gene, partial cds	962	962	7%	0.0	88%	KF383032.1
Select seq gb|KF383037.1|	Zika virus strain ArA506 envelope protein gene, partial cds	957	957	7%	0.0	88%	KF383037.1
Select seq gb|KF383034.1|	Zika virus strain ArD30156 envelope protein gene, partial cds	957	957	7%	0.0	88%	KF383034.1
Select seq gb|KF383029.1|	Zika virus strain ArD165522 envelope protein gene, partial cds	957	957	7%	0.0	88%	KF383029.1
Select seq gb|KF383033.1|	Zika virus strain AnD30332 envelope protein gene, partial cds	953	953	7%	0.0	88%	KF383033.1
Select seq gb|KF383036.1|	Zika virus strain ArA975 envelope protein gene, partial cds	951	951	7%	0.0	88%	KF383036.1
Select seq gb|KF383028.1|	Zika virus strain ArD165531 envelope protein gene, partial cds	935	935	7%	0.0	88%	KF383028.1
Select seq gb|KF383039.1|	Zika virus strain HD78788 envelope protein gene, partial cds	933	933	7%	0.0	88%	KF383039.1
Select seq gb|KF383031.1|	Zika virus strain ArD9957 envelope protein gene, partial cds	930	930	7%	0.0	87%	KF383031.1
Select seq gb|KF383038.1|	Zika virus strain ArA986 envelope protein gene, partial cds	924	924	7%	0.0	87%	KF383038.1
Select seq gb|EU566860.1|	St. Louis encephalitis virus strain Hubbard, complete genome	921	2018	57%	0.0	69%	EU566860.1
Select seq gb|KT823415.1|	St. Louis encephalitis virus strain RT 121B polyprotein gene, complete cds	917	1909	65%	0.0	69%	KT823415.1
Select seq gb|FJ753286.2|	St. Louis encephalitis virus strain CbaAr-4005, complete genome	917	1927	65%	0.0	69%	FJ753286.2
Select seq gb|KF383046.1|	Zika virus strain ArA982 envelope protein gene, partial cds	915	915	7%	0.0	87%	KF383046.1
Select seq gb|KF383103.1|	Zika virus strain ArA986 nonstructural protein 5 gene, partial cds	906	906	6%	0.0	88%	KF383103.1
Select seq gb|KF383086.1|	Zika virus strain ArA975 nonstructural protein 5 gene, partial cds	906	906	6%	0.0	88%	KF383086.1
Select seq gb|KF383045.1|	Zika virus strain ArA27106 envelope protein gene, partial cds	902	902	7%	0.0	87%	KF383045.1
Select seq gb|KF383043.1|	Zika virus strain ArA27443 envelope protein gene, partial cds	897	897	7%	0.0	87%	KF383043.1
Select seq gb|KF383035.1|	Zika virus strain MR1429 envelope protein gene, partial cds	897	897	7%	0.0	86%	KF383035.1
Select seq gb|KF383041.1|	Zika virus strain ArA27290 envelope protein gene, partial cds	893	893	7%	0.0	86%	KF383041.1
Select seq gb|KF383042.1|	Zika virus strain ArA27096 envelope protein gene, partial cds	888	888	7%	0.0	86%	KF383042.1
Select seq gb|EF158069.1|	St. Louis encephalitis virus strain 72 V 4749 polyprotein gene, partial cds	886	1968	67%	0.0	69%	EF158069.1
Select seq gb|FJ753287.2|	St. Louis encephalitis virus strain 79V-2533, complete genome	884	1823	63%	0.0	69%	FJ753287.2
Select seq gb|KF383104.1|	Zika virus strain ArA982 nonstructural protein 5 gene, partial cds	874	874	6%	0.0	87%	KF383104.1
Select seq gb|KF383085.1|	Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds	874	874	6%	0.0	87%	KF383085.1
Select seq gb|KF383106.1|	Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds	870	870	6%	0.0	87%	KF383106.1
Select seq gb|EF158063.1|	St. Louis encephalitis virus strain CorAn 9124 polyprotein gene, partial cds	868	1961	60%	0.0	69%	EF158063.1
Select seq gb|KU978616.1|	Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds	865	865	4%	0.0	99%	KU978616.1
Select seq gb|KF383114.1|	Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds	865	865	6%	0.0	87%	KF383114.1
Select seq gb|KF383107.1|	Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds	865	865	6%	0.0	87%	KF383107.1
Select seq gb|KF383088.1|	Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds	865	865	6%	0.0	87%	KF383088.1
Select seq gb|KX101067.1|	Zika virus isolate Bahia12, partial genome	863	8495	51%	0.0	89%	KX101067.1
Select seq gb|KF383040.1|	Zika virus strain ArA27101 envelope protein gene, partial cds	863	863	7%	0.0	85%	KF383040.1
Select seq gb|KF383087.1|	Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds	861	861	6%	0.0	87%	KF383087.1
Select seq gb|KF383089.1|	Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds	847	847	6%	0.0	87%	KF383089.1
Select seq gb|KF383101.1|	Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds	843	843	6%	0.0	86%	KF383101.1
Select seq gb|KF383097.1|	Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds	843	843	6%	0.0	86%	KF383097.1
Select seq gb|KF383099.1|	Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds	838	838	6%	0.0	86%	KF383099.1
Select seq gb|KF383098.1|	Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds	834	834	6%	0.0	86%	KF383098.1
Select seq dbj|AB908162.1|	Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID	825	825	4%	0.0	99%	AB908162.1
Select seq gb|KU872850.1|	Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds	823	823	4%	0.0	99%	KU872850.1
Select seq gb|KC754954.1|	Usutu virus isolate ArD19848, complete genome	809	1560	60%	0.0	68%	KC754954.1
Select seq gb|KF383084.1|	Zika virus strain HD78788 nonstructural protein 5 gene, partial cds	807	807	6%	0.0	85%	KF383084.1
Select seq gb|KF383113.1|	Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds	801	801	6%	0.0	85%	KF383113.1
Select seq gb|HM147824.1|	West Nile virus from Democratic Republic of the Congo, complete genome	783	1706	53%	0.0	68%	HM147824.1
Select seq gb|KC754958.1|	Usutu virus isolate ArB1803, complete genome	782	1867	54%	0.0	68%	KC754958.1
Select seq gb|EF429199.1|	West Nile virus SA381/00, complete genome	765	1720	50%	0.0	68%	EF429199.1
Select seq gb|DQ176636.2|	West Nile virus strain Madagascar-AnMg798, complete genome	756	1527	48%	0.0	68%	DQ176636.2
Select seq gb|KM203863.1|	West Nile virus strain Cz 13-502, complete genome	742	1668	54%	0.0	68%	KM203863.1
Select seq gb|KM203860.1|	West Nile virus strain Cz 13-104, complete genome	729	1643	54%	0.0	67%	KM203860.1
Select seq gb|KF383017.1|	Zika virus strain ArD149938 envelope protein gene, partial cds	713	713	7%	0.0	81%	KF383017.1
Select seq gb|KF383016.1|	Zika virus strain ArD147917 envelope protein gene, partial cds	708	708	7%	0.0	81%	KF383016.1
Select seq gb|KF383015.1|	Zika virus strain ArD149810 envelope protein gene, partial cds	708	708	7%	0.0	81%	KF383015.1
Select seq gb|KF383021.1|	Zika virus strain ArD132912 envelope protein gene, partial cds	702	702	7%	0.0	81%	KF383021.1
Select seq gb|KF383020.1|	Zika virus strain ArA1465 envelope protein gene, partial cds	702	702	7%	0.0	81%	KF383020.1
Select seq gb|KF258813.1|	Zika virus isolate Java non-structural protein 5 mRNA, partial cds	693	693	3%	0.0	98%	KF258813.1
Select seq gb|KF383019.1|	Zika virus strain ArD132915 envelope protein gene, partial cds	686	686	7%	0.0	80%	KF383019.1
Select seq gb|JF262780.1|	Dengue virus 4 isolate P73-1120, complete genome	675	1750	50%	0.0	70%	JF262780.1
Select seq gb|JF262779.1|	Dengue virus 4 isolate P75-514, complete genome	675	1750	50%	0.0	70%	JF262779.1
Select seq gb|EF457906.1|	Dengue virus type 4 isolate P75-215, complete genome	672	1732	50%	0.0	69%	EF457906.1
Select seq gb|KF383092.1|	Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds	664	664	6%	0.0	81%	KF383092.1
Select seq gb|KF383093.1|	Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds	663	663	6%	0.0	81%	KF383093.1
Select seq gb|KF383095.1|	Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds	657	657	6%	0.0	81%	KF383095.1
Select seq gb|KF383091.1|	Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds	654	654	6%	0.0	80%	KF383091.1
Select seq gb|KU985088.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds	645	645	3%	8e-180	99%	KU985088.1
Select seq gb|FJ432747.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1832/2007, complete genome	645	1600	44%	8e-180	69%	FJ432747.1
Select seq gb|FJ410232.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1890/2007, complete genome	645	1600	44%	8e-180	69%	FJ410232.1
Select seq gb|FJ410201.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1806/2007, complete genome	639	1590	44%	3e-178	69%	FJ410201.1
Select seq gb|JQ686088.2|	Dengue virus 2 strain JHA1, partial genome	637	1511	60%	1e-177	69%	JQ686088.2
Select seq gb|JN697058.1|	Dengue virus 1 isolate DH/S1/05/152, complete genome	636	1613	46%	4e-177	69%	JN697058.1
Select seq gb|FJ882536.1|	Dengue virus 1 isolate DENV-1/VN/BID-V2711/2006, complete genome	636	1586	44%	4e-177	69%	FJ882536.1
Select seq gb|FJ410257.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1925/2008, complete genome	636	1532	43%	4e-177	69%	FJ410257.1
Select seq gb|FJ410234.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1896/2007, complete genome	636	1573	43%	4e-177	69%	FJ410234.1
Select seq emb|HG316482.1|	Dengue virus type 1 complete genome, isolate KDH0030A	634	1593	51%	1e-176	69%	HG316482.1
Select seq gb|KX062045.1|	Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds	630	630	3%	2e-175	100%	KX062045.1
Select seq gb|FJ906728.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1852/2007, complete genome	630	1562	44%	2e-175	69%	FJ906728.1
Select seq gb|FJ432734.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1792/2007, complete genome	630	1572	44%	2e-175	69%	FJ432734.1
Select seq gb|JQ048541.1|	Dengue virus 1 isolate DG14, complete genome	627	1602	49%	2e-174	69%	JQ048541.1
Select seq gb|GU131725.1|	Dengue virus 1 isolate DENV-1/VN/BID-V3903/2008, complete genome	627	1572	44%	2e-174	69%	GU131725.1
Select seq gb|FJ410250.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1917/2007, complete genome	627	1575	46%	2e-174	69%	FJ410250.1
Select seq gb|FJ410211.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1830/2007, complete genome	627	1581	44%	2e-174	69%	FJ410211.1
Select seq gb|FJ410204.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1809/2007, complete genome	627	1575	44%	2e-174	69%	FJ410204.1
Select seq gb|FJ410203.1|	Dengue virus 1 isolate DENV-1/VN/BID-V1808/2007, complete genome	627	1575	44%	2e-174	69%	FJ410203.1
Select seq gb|KX062044.1|	Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds	625	625	3%	7e-174	99%	KX062044.1
Select seq emb|FM210240.2|	Dengue virus 2 isolate MD1273, complete genome	614	1418	59%	1e-170	69%	FM210240.2
Select seq gb|DQ181799.1|	Dengue virus type 2 strain ThD2_0017_98, complete genome	612	1644	53%	5e-170	69%	DQ181799.1
Select seq gb|AF100462.1|AF100462	Dengue virus type 2 strain C0390 polyprotein gene, complete cds	607	1613	52%	2e-168	69%	AF100462.1
Select seq gb|GU131894.1|	Dengue virus 1 isolate DENV-1/IPC/BID-V3786/2008, complete genome	600	1450	42%	3e-166	68%	GU131894.1
Select seq gb|GQ868633.1|	Dengue virus 1 isolate DENV-1/IPC/BID-V3793/2008, complete genome	600	1454	42%	3e-166	68%	GQ868633.1
Select seq gb|FJ639711.1|	Dengue virus 2 isolate DENV-2/KH/BID-V2045/2005, complete genome	598	1409	58%	1e-165	69%	FJ639711.1
Select seq gb|FJ639710.1|	Dengue virus 2 isolate DENV-2/KH/BID-V2044/2005, complete genome	598	1409	58%	1e-165	69%	FJ639710.1
Select seq gb|KJ918750.1|	Dengue virus 2 isolate P23085 INDI-60, complete genome	596	1649	47%	3e-165	69%	KJ918750.1
Select seq gb|EU529701.1|	Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome	589	1676	48%	5e-163	68%	EU529701.1
Select seq gb|KR815989.1|	Zika virus isolate 15095 envelope protein gene, partial cds	587	587	3%	2e-162	99%	KR815989.1
Select seq gb|JN819408.1|	Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome	585	1595	48%	6e-162	69%	JN819408.1
Select seq gb|GU131887.1|	Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome	581	1537	42%	8e-161	68%	GU131887.1
Select seq gb|EU482580.1|	Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome	580	1658	48%	3e-160	68%	EU482580.1
Select seq gb|FJ850050.1|	Dengue virus 2 isolate DENV-2/NI/BID-V2356/2007, complete genome	576	1618	49%	3e-159	68%	FJ850050.1
Select seq gb|EU569702.1|	Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome	576	1632	50%	3e-159	68%	EU569702.1
Select seq gb|EU596483.1|	Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome	572	1643	50%	4e-158	68%	EU596483.1
Select seq gb|JN819407.1|	Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome	571	1611	45%	1e-157	68%	JN819407.1
Select seq gb|FJ898466.1|	Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome	567	1584	49%	2e-156	68%	FJ898466.1
Select seq gb|KR816334.1|	Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds	545	545	2%	6e-150	99%	KR816334.1
Select seq gb|KR816333.1|	Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds	544	544	2%	2e-149	99%	KR816333.1
Select seq gb|KR816335.1|	Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds	540	540	2%	2e-148	99%	KR816335.1
Select seq gb|JQ922552.1|	Dengue virus 2 isolate DENV-2/IND/P23085/1960, complete genome	536	1609	46%	3e-147	68%	JQ922552.1
Select seq gb|KM212966.1|	Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds	529	529	2%	4e-145	99%	KM212966.1
Select seq gb|KM212965.1|	Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds	526	526	2%	5e-144	99%	KM212965.1
Select seq gb|KM212964.1|	Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds	526	526	2%	5e-144	99%	KM212964.1
Select seq gb|KM212963.1|	Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds	526	526	2%	5e-144	99%	KM212963.1
Select seq gb|KJ579441.1|	Zika virus isolate PF13-CP221013c polyprotein gene, partial cds	502	502	2%	6e-137	99%	KJ579441.1
Select seq gb|KJ680134.1|	Zika virus strain PF13-091213-121 polyprotein gene, partial cds	499	499	2%	7e-136	99%	KJ680134.1
Select seq gb|JQ922553.1|	Dengue virus 2 isolate DENV-2/IND/803347/1980, complete genome	430	1456	46%	3e-115	67%	JQ922553.1
Select seq gb|KU954085.1|	Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds	421	421	2%	2e-112	99%	KU954085.1