niman Posted May 8, 2016 Report Share Posted May 8, 2016 (edited) JCVI has released a full 2016 Panama sequence from a case, PAN/BEI-259634_V4/2016, Edited May 8, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted May 8, 2016 Author Report Share Posted May 8, 2016 LOCUS KX198135 10709 bp ss-RNA linear VRL 06-MAY-2016 DEFINITION Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome. ACCESSION KX198135 VERSION KX198135.1 GI:1026288143 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10709) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (05-MAY-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 250.9x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10709 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016" /host="Homo sapiens" /db_xref="BEI:NR-50210" /db_xref="taxon:64320" /lab_host="Cercopithecus aethiops kidney epithelial cells" /country="Panama" /collection_date="2016" /note="passage history: V4; V# = number of passages in Vero cells" misc_feature 1..10709 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00007.MAIN" gene 79..10350 /gene="GP1" /locus_tag="A2G93_63483gpGP1" CDS 79..10350 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /codon_start=1 /product="polyprotein" /protein_id="ANC90428.1" /db_xref="GI:1026288144" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGAETSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVAKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 79..390 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 445..723 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="protein pr" mat_peptide 724..948 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 949..2460 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="envelope protein E" mat_peptide 2461..3516 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS1" mat_peptide 3517..4194 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS2A" mat_peptide 4195..4584 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS2B" mat_peptide 4585..6435 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS3" mat_peptide 6436..6816 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS4A" mat_peptide 6817..6885 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="protein 2K" mat_peptide 6886..7638 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="nonstructural protein NS4B" mat_peptide 7639..10347 /gene="GP1" /locus_tag="A2G93_63483gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt ttggatttgg 61 aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt ccggattgtc 121 aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa gaggctgcca 181 gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct agcctttttg 241 agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc agtggggaaa 301 aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat gctgagaata 361 atcaatgcta ggaaggagaa gaagagacga ggcgcagaaa ctagtgtcgg aattgttggc 421 ctccttctga ccacagctat ggcagcggag gtcactagac gtgggagtgc atactatatg 481 tacttggaca gaaacgatgc tggggaggcc atatcttttc caaccacatt ggggatgaat 541 aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat gagctatgaa 601 tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg caacacgacg 661 tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg gagatctaga 721 agagccgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc gcaaacctgg 781 ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat attcaggaac 841 cctggtttcg ctttagcagc agctgccatc gcttggcttt tgggaagctc aacgagccaa 901 aaagtcatat acttggtcat gatactgctg attgccccgg catacagcat caggtgcata 961 ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt tgatgttgtc 1021 ttggaacatg gaggttgtgt caccgtaatg gcacaggaca aaccgactgt cgacatagag 1081 ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta tgaggcatca 1141 atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta ccttgacaag 1201 caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg gggaaatgga 1261 tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg ctccaagaaa 1321 atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgtt gtcagttcat 1381 ggctcccagc acagtgggat gattgttaat gacacaggac atgaaactga tgagaataga 1441 gcgaaggttg agataacgcc caattcacca agagccgaag ccaccctggg gggttttgga 1501 agcctaggac ttgattgtga accgaggaca ggccttgact tttcagattt gtattacttg 1561 actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat tccattacct 1621 tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc actggtagag 1681 ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca agaaggagca 1741 gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa gggaaggctg 1801 tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa gggcgtgtca 1861 tactccttgt gtaccgcagc gttcacattc accaagatcc cggctgaaac actgcacggg 1921 acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt tccagctcag 1981 atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc taaccccgta 2041 atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc atttggggac 2101 tcttacattg tcataggagt cggggagaag aagatcaccc accactggca caggagtggc 2161 agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat ggcagtcttg 2221 ggagacacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt gggcaagggc 2281 atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc ctggttctca 2341 caaattctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa tggatctatt 2401 tcccttatgt gcttggcctt agggggagtg ttgatcttct tatccacagc cgtctctgct 2461 gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgtggtac aggggtgttc 2521 gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga ctccccccgt 2581 agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat ctcctctgtt 2641 tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaacgc aatcctggaa 2701 gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat gtggagaggt 2761 ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc ttgggggaaa 2821 tcgtacttcg tcagagcagc aaagacaaat aacagctttg tcgtggatgg tgacacactg 2881 aaggaatgcc cactcaaaca tagagcatgg aacagctttc ttgtggagga tcatgggttc 2941 ggggtatttc acactagtgt ctggctcaag gttagagaag attattcatt agagtgtgat 3001 ccagccgtta ttggaacagc tgttaaggga aaggaggctg tacacagtga tctaggctac 3061 tggattgaga gtgagaagaa tgacacatgg aggctgaaga gggcccatct gatcgagatg 3121 aaaacatgtg aatggccaaa gtcccacaca ttgtggacag atggaataga agagagtgat 3181 ctgatcatac ccaagtcttt agctgggcca ctcagccatc acaataccag agagggctac 3241 aggacccaaa tgaaagggcc atggcacagt gaagagcttg aaattcggtt tgaggaatgc 3301 ccaggcacta aggtccacgt ggaggaaaca tgtggaacaa gaggaccatc tctgagatca 3361 accactgcaa gcggaagggt gatcgaggaa tggtgctgca gggagtgcac aatgccccca 3421 ctgtcgttct gggctaaaga tggctgttgg tatggaatgg agataaggcc caggaaagaa 3481 ccagaaagca acttagtaag gtcaatggtg actgcaggat caactgatca catggatcac 3541 ttctcccttg gagtgcttgt gattctgctc atggtgcagg aagggctgaa gaagagaatg 3601 accacaaaga tcatcataag cacatcaatg gcagtgctgg tagctatgat cctgggagga 3661 ttttcaatga gtgacctggc taagcttgca attttgatgg gtgccacctt cgcggaaatg 3721 aacactggag gagatgtagc tcatctggcg ctgatagcgg cattcaaagt cagaccagcg 3781 ttgctggtat ctttcatctt cagagctaat tggacacccc gtgaaagcat gctgctggcc 3841 ttggcctcgt gtcttttgca aactgcgatc tccgccttgg agggcgacct gatggttctc 3901 atcaatggtt ttgctttggc ctggttggca atacgagcga tggttgttcc acgcactgac 3961 aacatcacct tggcaatcct ggctgctctg acaccactgg cccggggcac actgcttgtg 4021 gcgtggagag caggccttgc cacttgcggg gggtttatgc tcctctctct gaagggaaaa 4081 ggcagtgtga agaagaactt accatttgtc atggccctgg gactaaccgc tgtgaggctg 4141 gtcgacccca tcaacgtggt gggactgctg ttgctcacaa ggagtgggaa gcggagctgg 4201 ccccctagcg aagtactcac agctgttggc ctgatatgcg cattggctgg agggttcgcc 4261 aaggcagata tagagatggc tgggcccatg gccgcggtcg gtctgctaat tgtcagttac 4321 gtggtctcag gaaagagtgt ggacatgtac attgaaagag caggtgacat cacatgggaa 4381 aaagatgcgg aagtcactgg aaacagtccc cggctcgatg tggcgctaga tgagagtggt 4441 gatttctccc tggtggagga tgacggtccc cccatgagag agatcatact caaggtggtc 4501 ctgatgacca tctgtggcat gaacccaata gccataccct ttgcagctgg agcgtggtac 4561 gtatacgtga agactggaaa aaggagtggt gctctatggg atgtgcctgc tcccaaggaa 4621 gtaaaaaagg gggagaccac agatggagtg tacagagtaa tgactcgtag actgctaggt 4681 tcaacacaag ttggagtggg agttatgcaa gagggggtct ttcacactat gtggcacgtc 4741 acaaaaggat ccgcgctgag aagcggtgaa gggagacttg atccatactg gggagatgtc 4801 aagcaggatc tggtgtcata ctgtggtcca tggaagctag atgccgcctg ggacgggcac 4861 agcgaggtgc agctcttggc cgtgcccccc ggagagagag cgaggaacat ccagactctg 4921 cccggaatat ttaagacaaa ggatggggac attggagcgg ttgcgctgga ttacccagca 4981 ggaacttcag gatctccaat cctagacaag tgtgggagag tgataggact ttatggcaat 5041 ggggtcgtga tcaaaaatgg gagttatgtt agtgccatca cccaagggag gagggaggaa 5101 gagactcctg ttgagtgctt cgagccttcg atgctgaaga agaagcagct aactgtctta 5161 gacttgcatc ctggagctgg gaaaaccagg agagttcttc ctgaaatagt ccgtgaagcc 5221 ataaaaacaa gactccgtac tgtgatctta gctccaacca gggttgtcgc tgctgaaatg 5281 gaggaagccc ttagagggct tccagtgcgt tatatgacaa cagcagtcaa tgtcacccac 5341 tctggaacag aaatcgtcga cttaatgtgc catgccacct tcacttcacg tctactacag 5401 ccaatcagag tccccaacta taatctgtat attatggatg aggcccactt cacagatccc 5461 tcaagtatag cagcaagagg atacatttca acaagggttg agatgggcga ggcggctgcc 5521 atcttcatga ccgccacgcc accaggaacc cgtgacgcat ttccggactc caactcacca 5581 attatggaca ccgaagtgga agtcccagag agagcctgga gctcaggctt tgattgggtg 5641 acggatcatt ctggaaaaac agtttggttt gttccaagcg tgaggaacgg caatgagatc 5701 gcagcttgtc tgacaaaggc tggaaaacgg gtcatacagc tcagcagaaa gacttttgag 5761 acagagttcc agaaaacaaa acatcaagag tgggactttg tcgtgacaac tgacatttca 5821 gagatgggcg ccaactttaa agctgaccgt gtcatagatt ccaggagatg cctaaagccg 5881 gtcatacttg atggcgagag agtcattctg gctggaccca tgcctgtcac acatgccagc 5941 gctgcccaga ggagggggcg cataggcagg aatcccaata aacctggaga tgagtatctg 6001 tatggaggtg ggtgcgcaga gactgacgaa gaccatgcac actggcttga agcaagaatg 6061 ctccttgaca atatttacct ccaagatggc ctcatagcct cgctctatcg acctgaggcc 6121 gacaaagtag cagccattga gggagagttc aagcttagga cggagcaaag gaagaccttt 6181 gtggaactca tgaaaagagg agatcttcct gtttggctgg cctatcaggt tgcatctgcc 6241 ggaataacct acacagatag aagatggtgc tttgatggca cgaccaacaa caccataatg 6301 gaagacagtg tgccggcaga ggtgtggacc agacacggag agaaaagagt gctcaaaccg 6361 aggtggatgg acgccagagt ttgttcagat catgcggccc tgaagtcatt caaggagttt 6421 gccgctggga aaagaggagc ggcttttgga gtgatggaag ccctgggaac actgccagga 6481 cacatgacag agagattcca ggaagccatt gacaacctcg ctgtgctcat gcgggcagag 6541 actggaagca ggccttacaa agccgcggcg gcccaattgc cggagaccct agagaccatt 6601 atgcttttgg ggttgctggg aacagtctcg ctgggaatct ttttcgtctt gatgaggaac 6661 aagggcatag ggaagatggg ctttggaatg gtgactcttg gggccagcgc atggctcatg 6721 tggctctcgg aaattgagcc agccagaatt gcatgtgtcc tcattgttgt gttcctattg 6781 ctggtggtgc tcatacctga gccagaaaag caaagatctc cccaggacaa ccaaatggca 6841 atcatcatca tggtagcagt aggtcttctg ggcttgatta ccgccaatga actcggatgg 6901 ttggagagaa caaagagtga cctaagccat ctaatgggaa ggagagagga gggggcaacc 6961 ataggattct caatggacat tgacctgcgg ccagcctcag cttgggccat ctatgctgcc 7021 ttgacaactt tcattacccc agccgtccaa catgcagtga ccacttcata caacaactac 7081 tccttaatgg cgatggccac gcaagctgga gtgttgtttg gtatgggcaa agggatgcca 7141 ttctacgcat gggactttgg agtcccgctg ctaatgatag gttgttactc acaattaaca 7201 cccctgaccc taatagtggc catcattttg ctcgtggcgc actacatgta cttgatccca 7261 gggctgcagg cagcagctgc gcgtgctgcc cagaagagaa cggcagctgg catcatgaag 7321 aaccctgttg tggatggaat agtggtgact gacattgaca caatgacaat tgacccccaa 7381 gtggagaaaa agatgggaca ggtgctactc atagcagtag ccgtctccag cgccatactg 7441 tcgcggaccg cctgggggtg gggggaggct ggggccctga tcacagccgc aacttccact 7501 ttgtgggaag gctctccgaa caagtactgg aactcctcta cagccacttc actgtgtaac 7561 atttttaggg gaagttactt ggctggagct tctctaatct acacagtaac aagaaacgct 7621 ggcttggtca agagacgtgg gggtggaaca ggagagaccc tgggagagaa atggaaggcc 7681 cgcttgaacc agatgtcggc cctggagttc tactcctaca aaaagtcagg catcaccgag 7741 gtgtgcagag aagaggcccg ccgcgccctc aaggacggtg tggcaacggg aggccatgct 7801 gtgtcccgag gaagtgcaaa gctgagatgg ttggtggagc ggggatacct gcagccctat 7861 ggaaaggtca ttgatcttgg atgtggcaga gggggctgga gttactacgc cgccaccatc 7921 cgcaaagttc aagaagtgaa aggatacaca aaaggaggcc ctggtcatga agaacccgtg 7981 ttggtgcaaa gctatgggtg gaacatagtc cgtcttaaga gtggggtgga cgtctttcat 8041 atggcggctg agccgtgtga cacgttgctg tgtgacatag gtgagtcatc atctagtcct 8101 gaagtggaag aagcacggac gctcagagtc ctctccatgg tgggggattg gcttgaaaaa 8161 agaccaggag ccttttgtat aaaagtgttg tgcccataca ccagcactat gatggaaacc 8221 ctggagcgac tgcagcgtag gtatggggga ggactggtca gagtgccact ctcccgcaac 8281 tctacacatg agatgtactg ggtctctgga gcgaaaagca acaccataaa aagtgtgtcc 8341 accacgagcc agctcctctt ggggcgcatg gacgggccta ggaggccagt gaaatatgag 8401 gaggatgtga atctcggctc tggcacgcgg gctgtggtaa gctgcgctga agctcccaac 8461 atgaagatca ttggtaaccg cattgaaagg atccgcagtg agcacgcgga aacgtggttc 8521 tttgacgaga accacccata taggacatgg gcttaccatg gaagctatga ggcccccaca 8581 caagggtcag cgtcctctct aataaacggg gttgtcaggc tcctgtcaaa accctgggat 8641 gtggtgactg gagtcacagg aatagccatg accgacacca caccgtatgg tcagcaaaga 8701 gttttcaagg aaaaagtgga cactagggtg ccagaccccc aagaaggcac tcgtcaggtt 8761 atgagcatgg tctcttcctg gttgtggaaa gagctaggca aacacaaacg gccacgagtc 8821 tgtaccaaag aagagttcat caacaaggtt cgtagcaatg cagcattagg ggcaatattt 8881 gaagaggaaa aagagtggaa gactgcagtg gaagctgtga acgatccaag gttctgggct 8941 ctagtggaca aggaaagaga gcaccacctg agaggagagt gccagagttg tgtgtacaac 9001 atgatgggaa aaagagaaaa gaaacaaggg gaatttggaa aggccaaggg cagccgcgcc 9061 atctggtata tgtggctagg ggctagattt ctagagttcg aagcccttgg attcttgaac 9121 gaggatcact ggatggggag agagaactca ggaggtggtg ttgaagggct gggattacaa 9181 agactcggat atgtcctaga agagatgagt cgcataccag gaggaaggat gtatgcagat 9241 gacactgctg gctgggacac ccgcattagc aggtttgatc tggagaatga agctctaatc 9301 accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa gtacacatac 9361 caaaacaaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt tatggacatt 9421 atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct taacacattt 9481 accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct agagatgcaa 9541 gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag caacggatgg 9601 gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc aattgatgat 9661 aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa ggacacacaa 9721 gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg ctcccaccat 9781 ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg ccaccaagat 9841 gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg ggagactgct 9901 tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt atttccacag aagggacctc 9961 cgactgatgg ccaatgccat ttgttcatct gtgccagttg actgggttcc aactgggaga 10021 actacctggt caatccatgg aaagggagaa tggatgacca ctgaagacat gcttgtggtg 10081 tggaacagag tgtggattga ggagaacgac cacatggaag acaagacccc agttgcgaaa 10141 tggacagaca ttccctattt gggaaaaagg gaagacttgt ggtgtggatc tctcataggg 10201 cacagaccgc gcaccacctg ggctgagaac attaaaaaca cagtcaacat ggtgcgcagg 10261 atcataggtg atgaagaaaa gtacatggac tacctatcca cccaagttcg ctacttgggt 10321 gaagaagggt ctacacctgg agtgctgtaa gcaccaatct taatgttgtc aggcctgcta 10381 gtcagccaca gcttggggaa agctgtgcag cctgtgaccc ccccaggaga agctgggaaa 10441 ccaagcctat agtcaggccg agagcgccat ggcacggaag aagccatgct gcctgtgagc 10501 ccctcagagg acactgagtc aaaaaacccc acgcgcttgg aggcgcagga tgggaaaaga 10561 aggtggcgac cttccccacc cttcaatctg gggcctgaac tggagatcag ctgtggatct 10621 ccagaagagg gactagtggt tagaggagac cccccggaaa acgcaaaaca gcatattgac 10681 gctgggaaag accagagact ccatgagtt Link to comment Share on other sites More sharing options...
niman Posted May 8, 2016 Author Report Share Posted May 8, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1852518525100%0.0100%KX198135.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1847118471100%0.099%KX156776.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1846518465100%0.099%KX156774.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1846218462100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1846218462100%0.099%KX087102.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1846218462100%0.099%KU820897.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1845618456100%0.099%KU647676.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1843818438100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1843518435100%0.099%KU922923.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1841118411100%0.099%KU991811.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1840818408100%0.099%KU509998.3Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1840218402100%0.099%KJ776791.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1839318393100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1839318393100%0.099%KU365779.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1839318393100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1839018390100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1838418384100%0.099%KU729218.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1838118381100%0.099%KX197192.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1838118381100%0.099%KU365780.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183771837799%0.099%KU497555.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1837518375100%0.099%KU365777.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1837218372100%0.099%KU926309.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1836618366100%0.099%KU940228.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1836318363100%0.099%KU501217.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1836318363100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1836318363100%0.099%KU312312.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1835718357100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1835718357100%0.099%KU527068.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1835718357100%0.099%KU501216.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1835418354100%0.099%KU937936.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1835418354100%0.099%KU820898.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1835418354100%0.099%KU501215.1Select seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1834818348100%0.099%KX087101.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1834518345100%0.099%KU926310.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1833918339100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1833918339100%0.099%KU955590.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1833918339100%0.099%KU870645.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1833618336100%0.099%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1833618336100%0.099%KU853013.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1833618336100%0.099%KU761564.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1833418334100%0.099%KU853012.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1831218312100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1830318303100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1830318303100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1830018300100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1830018300100%0.099%KU820899.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182731827399%0.099%KU940224.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1819118191100%0.099%KU866423.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1815918159100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1806918069100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1776217762100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177621776299%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177301773098%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1760717607100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1745617456100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164331643399%0.095%HQ234499.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1329013290100%0.089%KU955595.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1329013290100%0.089%KU720415.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1328813288100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1328413284100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1328413284100%0.089%KF268948.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132841328499%0.089%HQ234498.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1328113281100%0.089%KU955592.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1327913279100%0.089%DQ859059.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1327713277100%0.089%KF268950.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1327213272100%0.089%KF383119.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1326813751100%0.089%KX198134.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1326813268100%0.089%LC002520.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1326313263100%0.089%KU955591.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1325213252100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1325213252100%0.089%KU955594.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1324813248100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132321323299%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1320913209100%0.089%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1316013160100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1315813266100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131561315699%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1294513013100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128731287397%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108711087197%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50521444087%0.095%KU940227.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4962496227%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4935493527%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4682468225%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4673467325%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42261332375%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3440344018%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3211321117%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31191311574%0.099%KX101066.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2847417195%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2695269514%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22621078665%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2075207511%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2017201711%0.099%KU179098.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18461390278%0.0100%KX101061.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds183318339%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds183318339%0.099%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds165416549%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds165416549%0.099%KX173840.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds152315238%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds151215128%0.099%KX173844.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds137913797%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds134813487%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134213427%0.099%KU556802.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134213427%0.098%KM851038.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1310131010%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds124512456%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds123412346%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds123412346%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds123212326%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds122012206%0.099%KU232294.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds121812186%0.099%KU232298.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121812186%0.099%KU232292.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds121612166%0.099%KU232293.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds121412146%0.099%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120712076%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119511956%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118611866%0.099%KU232291.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome1184777546%0.099%KX101065.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome1177743642%0.099%KX101063.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113011306%0.098%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds107710778%0.089%KF270886.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome1054733941%0.097%KX101062.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds102010208%0.087%AF372422.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101210125%0.099%KU867812.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds100010007%0.089%KF270887.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9809807%0.089%KF383022.1Select seq gb|EF158064.1|St. Louis encephalitis virus strain GML 902612 polyprotein gene, partial cds980199264%0.070%EF158064.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds9759757%0.089%KF383026.1Select seq gb|EU303241.1|Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds9679677%0.088%EU303241.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds9669667%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds9629627%0.088%KF383034.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds9629627%0.088%KF383029.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds9609607%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds9579577%0.088%KF383036.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds9579577%0.088%KF383033.1Select seq gb|JX041632.1|West Nile virus strain Ig2266, complete genome944180058%0.069%JX041632.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds9399397%0.088%KF383039.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds9399397%0.088%KF383028.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds9359357%0.088%KF383031.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds9309307%0.087%KF383038.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds9219217%0.087%KF383046.1Select seq gb|EU566860.1|St. Louis encephalitis virus strain Hubbard, complete genome915200957%0.069%EU566860.1Select seq gb|KT823415.1|St. Louis encephalitis virus strain RT 121B polyprotein gene, complete cds913189665%0.069%KT823415.1Select seq gb|FJ753286.2|St. Louis encephalitis virus strain CbaAr-4005, complete genome913191665%0.069%FJ753286.2Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds9069067%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds9029027%0.087%KF383043.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds9019016%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds9019016%0.088%KF383086.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds9019017%0.086%KF383035.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds8978977%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds8938937%0.086%KF383042.1Select seq gb|EF158069.1|St. Louis encephalitis virus strain 72 V 4749 polyprotein gene, partial cds881196667%0.069%EF158069.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds8708706%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds8708706%0.087%KF383085.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds8668667%0.086%KF383040.1Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds8658654%0.099%KU978616.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds8658656%0.087%KF383106.1Select seq gb|EF158063.1|St. Louis encephalitis virus strain CorAn 9124 polyprotein gene, partial cds863195360%0.069%EF158063.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds8618616%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds8618616%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds8618616%0.087%KF383088.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome857850151%0.089%KX101067.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds8568566%0.087%KF383087.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds8438436%0.086%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds8388386%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds8388386%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds8348346%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds8298296%0.086%KF383098.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID8298294%0.099%AB908162.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds8238234%0.099%KU872850.1Select seq gb|KC754954.1|Usutu virus isolate ArD19848, complete genome812155960%0.068%KC754954.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds8018016%0.085%KF383084.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds7987986%0.085%KF383113.1Select seq gb|HM147824.1|West Nile virus from Democratic Republic of the Congo, complete genome789171153%0.068%HM147824.1Select seq gb|KC754958.1|Usutu virus isolate ArB1803, complete genome782186754%0.068%KC754958.1Select seq gb|EF429199.1|West Nile virus SA381/00, complete genome769162757%0.068%EF429199.1Select seq gb|DQ176636.2|West Nile virus strain Madagascar-AnMg798, complete genome760153048%0.068%DQ176636.2Select seq gb|KM203863.1|West Nile virus strain Cz 13-502, complete genome747167454%0.068%KM203863.1Select seq gb|KM203860.1|West Nile virus strain Cz 13-104, complete genome733164654%0.068%KM203860.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds7177177%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds7137137%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds7137137%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds7087087%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds7067067%0.081%KF383021.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds6936933%0.098%KF258813.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds6906907%0.080%KF383019.1Select seq gb|JF262780.1|Dengue virus 4 isolate P73-1120, complete genome681175550%0.070%JF262780.1Select seq gb|JF262779.1|Dengue virus 4 isolate P75-514, complete genome681175550%0.070%JF262779.1Select seq gb|EF457906.1|Dengue virus type 4 isolate P75-215, complete genome677173750%0.069%EF457906.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds6686686%0.081%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds6666666%0.081%KF383093.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds6636636%0.081%KF383095.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds6576576%0.081%KF383091.1Select seq gb|JQ686088.2|Dengue virus 2 strain JHA1, partial genome643151860%3e-17969%JQ686088.2Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds6416413%9e-17999%KU985088.1Select seq gb|KP406804.1|Dengue virus 2 isolate DENV-2/KBPV-VR-29, complete genome636149960%4e-17769%KP406804.1Select seq gb|FJ410201.1|Dengue virus 1 isolate DENV-1/VN/BID-V1806/2007, complete genome636158644%4e-17769%FJ410201.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds6306303%2e-175100%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds6256253%7e-17499%KX062044.1Select seq gb|JQ048541.1|Dengue virus 1 isolate DG14, complete genome621159749%9e-17369%JQ048541.1Select seq emb|FM210240.2|Dengue virus 2 isolate MD1273, complete genome618142359%1e-17169%FM210240.2Select seq gb|DQ181799.1|Dengue virus type 2 strain ThD2_0017_98, complete genome616164448%4e-17169%DQ181799.1Select seq gb|AF100462.1|AF100462Dengue virus type 2 strain C0390 polyprotein gene, complete cds610161350%2e-16969%AF100462.1Select seq gb|FJ639711.1|Dengue virus 2 isolate DENV-2/KH/BID-V2045/2005, complete genome603141658%2e-16769%FJ639711.1Select seq gb|FJ639710.1|Dengue virus 2 isolate DENV-2/KH/BID-V2044/2005, complete genome603141658%2e-16769%FJ639710.1Select seq gb|KJ918750.1|Dengue virus 2 isolate P23085 INDI-60, complete genome600165347%3e-16669%KJ918750.1Select seq gb|GU131894.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3786/2008, complete genome594144542%1e-16468%GU131894.1Select seq gb|GQ868633.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3793/2008, complete genome594144842%1e-16468%GQ868633.1Select seq gb|EU529701.1|Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome592167746%4e-16468%EU529701.1Select seq gb|JN819408.1|Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome590159946%1e-16369%JN819408.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds5895893%5e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds5875873%2e-16299%KR815989.1Select seq gb|EU482580.1|Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome583165946%2e-16168%EU482580.1Select seq gb|FJ850050.1|Dengue virus 2 isolate DENV-2/NI/BID-V2356/2007, complete genome581162349%8e-16168%FJ850050.1Select seq gb|EU569702.1|Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome581163850%8e-16168%EU569702.1Select seq gb|GU131887.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome576153242%3e-15968%GU131887.1Select seq gb|EU596483.1|Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome576164750%3e-15968%EU596483.1Select seq gb|EU482687.1|Dengue virus 2 isolate DENV-2/NI/BID-V574/2006, complete genome576164050%3e-15968%EU482687.1Select seq gb|FJ898466.1|Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome572158248%4e-15868%FJ898466.1Select seq gb|JN819407.1|Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome567160745%2e-15668%JN819407.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds5455452%6e-15099%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds5445442%2e-14999%KR816333.1Select seq gb|JQ922552.1|Dengue virus 2 isolate DENV-2/IND/P23085/1960, complete genome542161446%7e-14968%JQ922552.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds5405402%2e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds5355352%1e-146100%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds5295292%4e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds5295292%4e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds5295292%4e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds5085082%1e-138100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds5025022%6e-13799%KJ680134.1Select seq gb|KF955392.1|Dengue virus 2 isolate DENV-2/NI/BID-V3001/2007, partial genome46184828%2e-12468%KF955392.1Select seq gb|JQ922553.1|Dengue virus 2 isolate DENV-2/IND/803347/1980, complete genome435146546%7e-11767%JQ922553.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254252%1e-11399%KU954085.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174172%2e-111100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174172%2e-111100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174172%2e-111100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174172%2e-111100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4164162%7e-11199%KT381874.1 Link to comment Share on other sites More sharing options...
niman Posted May 8, 2016 Author Report Share Posted May 8, 2016 Map Updatehttps://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en Link to comment Share on other sites More sharing options...
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