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Partial Zika Sequence Moscow ex-Dominican Republic


niman

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LOCUS       KX247638                 489 bp    RNA     linear   VRL 17-MAY-2016
DEFINITION  Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene,
            partial cds.
ACCESSION   KX247638
VERSION     KX247638.1  GI:1028727779
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Karan,L.S., Maleev,V.V., Fedorova,M.V., Grigorieva,Y.E.,
            Bulanenko,V.P. and Shipulin,G.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAY-2016) Central Research Institute of Epidemiology,
            Novogireevskaya Str, 3a, Moscow 111123, Russia
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Dominican_Rep-Rus-3-2016"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Russia"
                     /collection_date="09-May-2016"
     CDS             <1..>489
                     /note="NS2a-NS2b"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="ANF04751.1"
                     /db_xref="GI:1028727780"
                     /translation="LLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMVVPRTDN
                     ITLAILAALTPLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVR
                     LVDPINVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLI
                     VSY"
ORIGIN      
        1 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg
       61 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca
      121 cgcactgata acatcacctt ggcaatcctg gctgctctga caccactggc ccggggcaca
      181 ctgcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctctg
      241 aagggaaaag gcagtgtgaa gaagaactta ccatttgtca tggccctggg actaaccgct
      301 gtgaggctgg tcgaccccat caacgtggtg ggactgctgt tgctcacaag gagtgggaag
      361 cggagctggc cccctagcga agtactcaca gctgttggcc tgatatgcgc attggctgga
      421 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt
      481 gtcagttac
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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
883883100%0.0100%KX253996.1
883883100%0.0100%KX247638.1
883883100%0.0100%KX087101.2
883883100%0.0100%KX185891.1
883883100%0.0100%KX117076.1
883883100%0.0100%KU963796.1
883883100%0.0100%KU955589.1
883883100%0.0100%KU926310.1
883883100%0.0100%KU866423.1
883883100%0.0100%KU820899.2
883883100%0.0100%KU729218.1
883883100%0.0100%KU707826.1
883883100%0.0100%KU527068.1
883883100%0.0100%KU501215.1
883883100%0.0100%KU365780.1
883883100%0.0100%KU365779.1
883883100%0.0100%KU365777.1
883883100%0.0100%KU312312.1
883883100%0.0100%KJ776791.1
877877100%0.099%KX262887.1
877877100%0.099%KX247632.1
877877100%0.099%KX197192.1
877877100%0.099%KX051563.1
877877100%0.099%KU509998.3
877877100%0.099%KU978616.1
877877100%0.099%KU991811.1
877877100%0.099%KU940228.1
877877100%0.099%KU926309.1
877877100%0.099%KU853013.1
877877100%0.099%KU853012.1
877877100%0.099%KU729217.2
877877100%0.099%KU744693.1
877877100%0.099%KU501217.1
877877100%0.099%KU501216.1
877877100%0.099%KU365778.1
877877100%0.099%KU321639.1
874874100%0.099%KU937936.1
874874100%0.099%KX156776.1
874874100%0.099%KX156775.1
874874100%0.099%KU940224.1
874874100%0.099%KU870645.1
874874100%0.099%KU820898.1
874874100%0.099%KU740184.2
874874100%0.099%KU761564.1
874874100%0.099%KU497555.1
868868100%0.099%KX247646.1
868868100%0.099%KU820897.2
868868100%0.099%KX198135.1
868868100%0.099%KX156774.1
868868100%0.099%KX087102.1
868868100%0.099%KX056898.1
868868100%0.099%KU955590.1
868868100%0.099%KU922960.1
868868100%0.099%KU922923.1
868868100%0.099%KU647676.1
865865100%0.099%KU681081.3
86186199%0.099%KU740199.1
847847100%0.098%KU955593.1
847847100%0.098%JN860885.1
841841100%0.098%KU681082.3
841841100%0.098%KF993678.1
82082093%0.099%KU872850.1
809809100%0.096%KU940227.1
796796100%0.096%EU545988.1
771771100%0.095%HQ234499.1
75575586%0.099%KX101063.1
722722100%0.091%KX101064.1
654654100%0.087%KX101065.1
59259299%2e-16587%KF268950.1
59259299%2e-16587%KF268948.1
58758799%8e-16487%DQ859059.1
58358399%1e-16286%KF268949.1
57857899%4e-16186%KF383115.1
56556599%3e-15786%KF383121.1
56556599%3e-15786%KF383120.1
56556599%3e-15786%KF383119.1
56556599%3e-15786%KF383118.1
56056099%1e-15585%KU963573.1
56056099%1e-15585%KU955594.1
56056099%1e-15585%KU720415.1
56056099%1e-15585%LC002520.1
56056099%1e-15585%KF383116.1
56056099%1e-15585%HQ234498.1
56056099%1e-15585%AY632535.2
55655699%1e-15485%KU963574.1
55655699%1e-15485%HQ234500.1
55155199%6e-15385%KX198134.1
55155199%6e-15385%KU955595.1
55155199%6e-15385%KU955592.1
55155199%6e-15385%KU955591.1
55155199%6e-15385%HQ234501.1
53853899%4e-14984%KF383117.1
53375085%2e-14799%KX101061.1
30253861%5e-78100%KX101067.1
27741547%2e-7099%KX101066.1
14728232%2e-3199%KX101062.1
14514516%8e-31100%KX101060.1
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