niman Posted May 26, 2016 Report Share Posted May 26, 2016 Universidad El Bosque in Bogota has released partial Zika sequences from Colombia cases. Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 LOCUS KX261855 243 bp RNA linear VRL 20-MAY-2016 DEFINITION Zika virus isolate ZIKCOL16 polyprotein gene, partial cds. ACCESSION KX261855 VERSION KX261855.1 GI:1031621539 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 243) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Easy and inexpensive molecular detection of dengue, chikungunya and Zika viruses in febrile patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 243) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Direct Submission JOURNAL Submitted (19-MAY-2016) Virologia, Universidad El Bosque, Av. Cra 9 No. 131 a - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000, Colombia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..243 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKCOL16" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="Feb-2016" CDS <1..>243 /codon_start=2 /product="polyprotein" /protein_id="ANG09404.1" /db_xref="GI:1031621540" /translation="LIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQD KPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSR" ORIGIN 1 gctgattgcc ccggcataca gcatcaggtg cataggagtc agcaataggg actttgtgga 61 aggtatgtca ggtgggactt gggttgatgt tgtcttggaa catggaggtt gtgtcaccgt 121 aatggcacag gacaaaccga ctgtcgacat agagctggtt acaacaacag tcagcaacat 181 ggcggaggta agatcctact gctatgaggc atcaatatca gacatggctt cggacagccg 241 ctg Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds439439100%1e-119100%KX261855.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome439439100%1e-119100%KX262887.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome439439100%1e-119100%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds439439100%1e-119100%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome439439100%1e-119100%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome439439100%1e-119100%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome439439100%1e-119100%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome439439100%1e-119100%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome439439100%1e-119100%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome439439100%1e-119100%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome439439100%1e-119100%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome439439100%1e-119100%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds439439100%1e-119100%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds439439100%1e-119100%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome439439100%1e-119100%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome439439100%1e-119100%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds439439100%1e-119100%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds439439100%1e-119100%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome439439100%1e-119100%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds439439100%1e-119100%KU647676.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds439439100%1e-119100%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds439439100%1e-119100%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds439439100%1e-119100%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID439439100%1e-119100%AB908162.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds43543599%1e-118100%KM212966.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome434434100%5e-11899%KX253996.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome434434100%5e-11899%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds434434100%5e-11899%KX247632.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds434434100%5e-11899%KU820897.2Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome434434100%5e-11899%KX087101.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome434434100%5e-11899%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds434434100%5e-11899%KX185891.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds434434100%5e-11899%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds434434100%5e-11899%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds434434100%5e-11899%KX173840.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome434434100%5e-11899%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome434434100%5e-11899%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome434434100%5e-11899%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome434434100%5e-11899%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome434434100%5e-11899%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds434434100%5e-11899%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds434434100%5e-11899%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds434434100%5e-11899%KU991811.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome434434100%5e-11899%KU940227.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds434434100%5e-11899%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds434434100%5e-11899%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome434434100%5e-11899%KU926309.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome434434100%5e-11899%KU922923.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds434434100%5e-11899%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome434434100%5e-11899%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome434434100%5e-11899%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome434434100%5e-11899%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome434434100%5e-11899%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds434434100%5e-11899%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds434434100%5e-11899%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome434434100%5e-11899%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds434434100%5e-11899%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds434434100%5e-11899%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds434434100%5e-11899%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds434434100%5e-11899%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome434434100%5e-11899%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds434434100%5e-11899%KJ776791.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome430430100%6e-11799%KU955593.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome430430100%6e-11799%KU681081.3Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds430430100%6e-11799%KU686218.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds43043099%6e-11799%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds43043099%6e-11799%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds43043099%6e-11799%KM212963.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds430430100%6e-11799%JN860885.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds425425100%3e-11599%KX261853.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds425425100%3e-11599%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome425425100%3e-11599%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds425425100%3e-11599%KF993678.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds42342397%9e-11599%KX261852.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds42342396%9e-115100%KU312315.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds42342396%9e-115100%KJ579441.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds421421100%3e-11498%EU545988.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds41741796%4e-11399%KJ680134.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds40840894%2e-11099%KU954085.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds40740793%7e-11099%KX261854.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds39939994%1e-10799%KX261851.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds39939990%1e-107100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds39939990%1e-107100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds39939990%1e-107100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds39939990%1e-107100%KU926323.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds39939990%1e-107100%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds39439490%4e-10699%KU646827.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds39439490%4e-10699%KJ634273.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds37637688%1e-10099%KT381874.1 Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Seq map updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 LOCUS KX261854 240 bp RNA linear VRL 20-MAY-2016 DEFINITION Zika virus isolate ZIKCOL11 polyprotein gene, partial cds. ACCESSION KX261854 VERSION KX261854.1 GI:1031621537 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 240) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Easy and inexpensive molecular detection of dengue, chikungunya and Zika viruses in febrile patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 240) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Direct Submission JOURNAL Submitted (19-MAY-2016) Virologia, Universidad El Bosque, Av. Cra 9 No. 131 a - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000, Colombia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..240 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKCOL11" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="Feb-2016" CDS <1..>240 /codon_start=2 /product="polyprotein" /protein_id="ANG09403.1" /db_xref="GI:1031621538" /translation="VMILLIALAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTV MAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMA" ORIGIN 1 ggtcatgata ctgctgattg ccctggcata cagcatcagg tgcataggag tcagcaatag 61 ggactttgtg gaaggtatgt caggtgggac ttgggttgat gttgtcttgg aacatggagg 121 ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac atagagctgg ttacaacaac 181 agtcagcaac atggcggagg taagatccta ctgctatgag gcatcaatat cagacatggc Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds434434100%5e-118100%KX261854.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome434434100%5e-118100%KU922923.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome428428100%2e-11699%KX262887.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome428428100%2e-11699%KX087101.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome428428100%2e-11699%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds428428100%2e-11699%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome428428100%2e-11699%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome428428100%2e-11699%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome428428100%2e-11699%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome428428100%2e-11699%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome428428100%2e-11699%KU940224.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds42842898%2e-116100%KU954085.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome428428100%2e-11699%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome428428100%2e-11699%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome428428100%2e-11699%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds428428100%2e-11699%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds428428100%2e-11699%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome428428100%2e-11699%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome428428100%2e-11699%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds428428100%2e-11699%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds428428100%2e-11699%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome428428100%2e-11699%KU527068.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds428428100%2e-11699%KU686218.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds428428100%2e-11699%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome428428100%2e-11699%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds428428100%2e-11699%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds428428100%2e-11699%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds428428100%2e-11699%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID428428100%2e-11699%AB908162.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds425425100%3e-11599%KX261853.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds425425100%3e-11599%KX261851.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome425425100%3e-11599%KX253996.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome425425100%3e-11599%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds425425100%3e-11599%KX247632.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds425425100%3e-11599%KU820897.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome425425100%3e-11599%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds425425100%3e-11599%KX185891.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds425425100%3e-11599%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds425425100%3e-11599%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds425425100%3e-11599%KX173840.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome425425100%3e-11599%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome425425100%3e-11599%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome425425100%3e-11599%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome425425100%3e-11599%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome425425100%3e-11599%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds425425100%3e-11599%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds425425100%3e-11599%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds425425100%3e-11599%KU991811.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome425425100%3e-11599%KU940227.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds425425100%3e-11599%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds425425100%3e-11599%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome425425100%3e-11599%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds425425100%3e-11599%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome425425100%3e-11599%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome425425100%3e-11599%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome425425100%3e-11599%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome425425100%3e-11599%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds425425100%3e-11599%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds425425100%3e-11599%KU501216.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds425425100%3e-11599%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds425425100%3e-11599%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds425425100%3e-11599%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds425425100%3e-11599%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome425425100%3e-11599%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds425425100%3e-11599%KJ776791.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds42142197%3e-114100%KX261852.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome419419100%1e-11399%KU955593.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome419419100%1e-11399%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds419419100%1e-11399%JN860885.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds416416100%1e-11298%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome416416100%1e-11298%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds416416100%1e-11298%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds410410100%6e-11198%EU545988.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds40740795%7e-11099%KX261855.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds40340394%9e-10999%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds39939994%1e-10799%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds39939994%1e-10799%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds39939994%1e-10799%KM212963.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds39039091%5e-10599%KU312315.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds39039091%5e-10599%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds38738791%7e-10499%KJ680134.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds37237285%1e-99100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds37237285%1e-99100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds37237285%1e-99100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds37237285%1e-99100%KU926323.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds37237285%1e-99100%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds36736785%6e-9899%KU646827.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds36736785%6e-9899%KJ634273.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds361361100%3e-9693%HQ234499.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds34934983%2e-9299%KT381874.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds343343100%7e-9192%KF268949.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds33433499%4e-8891%KF383115.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds334334100%4e-8891%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds334334100%4e-8891%KF268948.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds325325100%2e-8590%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds325325100%2e-8590%HQ234500.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds320320100%8e-8490%KF383116.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome316316100%1e-8289%KX198134.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome316316100%1e-8289%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome316316100%1e-8289%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome316316100%1e-8289%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds316316100%1e-8289%HQ234501.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds316316100%1e-8289%DQ859059.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds311311100%4e-8189%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome311311100%4e-8189%KU955594.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds311311100%4e-8189%KF383117.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome311311100%4e-8189%AY632535.2Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds307307100%5e-8088%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID307307100%5e-8088%LC002520.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds307307100%5e-8088%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds307307100%5e-8088%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds307307100%5e-8088%HQ234498.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence298298100%3e-7788%KF383120.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome29729769%9e-7799%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome29529567%3e-76100%KX101066.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds28628665%2e-73100%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds28028064%7e-72100%KX173844.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds275275100%3e-7085%KF383118.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds17017095%9e-3976%DQ859064.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome16816840%3e-3899%KX101064.1 Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 LOCUS KX261853 255 bp RNA linear VRL 20-MAY-2016 DEFINITION Zika virus isolate ZIKCOL10 polyprotein gene, partial cds. ACCESSION KX261853 VERSION KX261853.1 GI:1031621535 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 255) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Easy and inexpensive molecular detection of dengue, chikungunya and Zika viruses in febrile patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 255) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Direct Submission JOURNAL Submitted (19-MAY-2016) Virologia, Universidad El Bosque, Av. Cra 9 No. 131 a - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000, Colombia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..255 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKCOL10" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="Feb-2016" CDS <1..>255 /codon_start=2 /product="polyprotein" /protein_id="ANG09402.1" /db_xref="GI:1031621536" /translation="VMILLIALAYSIRCIGVSNRDLVEGMSGGTWVDVVLEHGGCVTV MAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSR" ORIGIN 1 ggtcatgata ctgctgattg ccctggcata cagcatcagg tgcataggag tcagcaatag 61 ggacttagtg gaaggtatgt caggtgggac ttgggttgat gtcgtcttgg aacatggagg 121 ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac atagagctgg ttacaacaac 181 agtcagcaac atggcggagg taagatccta ctgctatgag gcatcaatat cagacatggc 241 ttcggacagc cgctg Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds461461100%4e-126100%KX261853.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome452452100%2e-12399%KX247646.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds452452100%2e-12399%KU820897.2Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome452452100%2e-12399%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome452452100%2e-12399%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome452452100%2e-12399%KX156774.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome452452100%2e-12399%KX087102.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome452452100%2e-12399%KU922923.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome446446100%9e-12299%KX262887.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome446446100%9e-12299%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds446446100%9e-12299%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome446446100%9e-12299%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome446446100%9e-12299%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome446446100%9e-12299%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome446446100%9e-12299%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome446446100%9e-12299%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome446446100%9e-12299%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome446446100%9e-12299%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome446446100%9e-12299%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds446446100%9e-12299%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds446446100%9e-12299%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome446446100%9e-12299%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome446446100%9e-12299%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds446446100%9e-12299%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds446446100%9e-12299%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome446446100%9e-12299%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds446446100%9e-12299%KU647676.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds446446100%9e-12299%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds446446100%9e-12299%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds446446100%9e-12299%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID446446100%9e-12299%AB908162.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome443443100%1e-12098%KX253996.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds443443100%1e-12098%KX247632.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome443443100%1e-12098%KX087101.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome443443100%1e-12098%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds443443100%1e-12098%KX185891.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds443443100%1e-12098%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds443443100%1e-12098%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds443443100%1e-12098%KX173840.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome443443100%1e-12098%KX117076.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds443443100%1e-12098%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds443443100%1e-12098%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds443443100%1e-12098%KU991811.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome443443100%1e-12098%KU940227.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds443443100%1e-12098%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds443443100%1e-12098%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome443443100%1e-12098%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds443443100%1e-12098%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome443443100%1e-12098%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome443443100%1e-12098%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome443443100%1e-12098%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome443443100%1e-12098%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds443443100%1e-12098%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds443443100%1e-12098%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome443443100%1e-12098%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds443443100%1e-12098%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds443443100%1e-12098%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds443443100%1e-12098%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds443443100%1e-12098%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome443443100%1e-12098%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds443443100%1e-12098%KJ776791.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome437437100%4e-11998%KU955593.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome437437100%4e-11998%KU681081.3Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds437437100%4e-11998%KU686218.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds437437100%4e-11998%JN860885.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds434434100%5e-11898%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome434434100%5e-11898%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds434434100%5e-11898%KF993678.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds42842894%2e-11699%KX261852.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds428428100%2e-11697%EU545988.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds42642694%8e-11699%KX261851.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds42542595%3e-11599%KX261855.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds42542594%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds42142193%3e-11499%KU954085.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds42142194%3e-11499%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds41741794%4e-11398%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds41741794%4e-11398%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds41741794%4e-11398%KM212963.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds40840891%2e-11099%KU312315.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds40840891%2e-11099%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds40540591%3e-10998%KJ680134.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds39439486%5e-10699%KU646827.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds39039086%6e-10599%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds39039086%6e-10599%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds39039086%6e-10599%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds39039086%6e-10599%KU926323.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds39039086%6e-10599%KU646828.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds38538586%2e-10399%KJ634273.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds379379100%1e-10193%HQ234499.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds370370100%5e-9992%KF268949.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds36736784%7e-9898%KT381874.1 Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 LOCUS KX261852 242 bp RNA linear VRL 20-MAY-2016 DEFINITION Zika virus isolate ZIKCOL06 polyprotein gene, partial cds. ACCESSION KX261852 VERSION KX261852.1 GI:1031621533 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 242) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Easy and inexpensive molecular detection of dengue, chikungunya and Zika viruses in febrile patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 242) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Direct Submission JOURNAL Submitted (19-MAY-2016) Virologia, Universidad El Bosque, Av. Cra 9 No. 131 a - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000, Colombia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..242 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKCOL06" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="Feb-2016" CDS <1..>242 /codon_start=1 /product="polyprotein" /protein_id="ANG09401.1" /db_xref="GI:1031621534" /translation="ILLIALAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMA QDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASD" ORIGIN 1 atactgctga ttgccctggc atacagcatc aggtgcatag gagtcagcaa tagggacttt 61 gtggaaggta tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc 121 accgtaatgg cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc 181 aacatggcgg aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac 241 ag Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds437437100%4e-119100%KX261852.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome437437100%4e-119100%KU922923.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome432432100%2e-11799%KX262887.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome432432100%2e-11799%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds432432100%2e-11799%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome432432100%2e-11799%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome432432100%2e-11799%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome432432100%2e-11799%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome432432100%2e-11799%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome432432100%2e-11799%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome432432100%2e-11799%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome432432100%2e-11799%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome432432100%2e-11799%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds432432100%2e-11799%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds432432100%2e-11799%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome432432100%2e-11799%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome432432100%2e-11799%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds432432100%2e-11799%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds432432100%2e-11799%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome432432100%2e-11799%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds432432100%2e-11799%KU647676.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds432432100%2e-11799%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds432432100%2e-11799%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds432432100%2e-11799%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID432432100%2e-11799%AB908162.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds428428100%2e-11699%KX261853.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome428428100%2e-11699%KX253996.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome428428100%2e-11699%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds428428100%2e-11699%KX247632.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds428428100%2e-11699%KU820897.2Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome428428100%2e-11699%KX087101.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome428428100%2e-11699%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds428428100%2e-11699%KX185891.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds428428100%2e-11699%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds428428100%2e-11699%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds428428100%2e-11699%KX173840.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome428428100%2e-11699%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome428428100%2e-11699%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome428428100%2e-11699%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome428428100%2e-11699%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome428428100%2e-11699%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds428428100%2e-11699%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds428428100%2e-11699%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds428428100%2e-11699%KU991811.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome428428100%2e-11699%KU940227.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds428428100%2e-11699%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds428428100%2e-11699%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome428428100%2e-11699%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds428428100%2e-11699%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome428428100%2e-11699%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome428428100%2e-11699%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome428428100%2e-11699%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome428428100%2e-11699%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds428428100%2e-11699%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds428428100%2e-11699%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome428428100%2e-11699%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds428428100%2e-11699%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds428428100%2e-11699%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds428428100%2e-11699%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds428428100%2e-11699%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome428428100%2e-11699%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds428428100%2e-11699%KJ776791.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds42342397%9e-11599%KX261855.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome423423100%9e-11599%KU955593.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds42342396%9e-115100%KU954085.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome423423100%9e-11599%KU681081.3Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds42342397%9e-11599%KU686218.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds423423100%9e-11599%JN860885.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds42142196%3e-114100%KX261854.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds419419100%1e-11398%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome419419100%1e-11398%KU681082.3Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds41941997%1e-11399%KM212966.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds419419100%1e-11398%KF993678.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds41641697%1e-11299%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds41641697%1e-11299%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds41641697%1e-11299%KM212963.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds41441496%5e-11299%KX261851.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds414414100%5e-11298%EU545988.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds40740794%7e-11099%KU312315.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds40740794%7e-11099%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds40340394%9e-10999%KJ680134.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds38938988%2e-104100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds38938988%2e-104100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds38938988%2e-104100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds38938988%2e-104100%KU926323.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds38938988%2e-104100%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds38338388%8e-10399%KU646827.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds38338388%8e-10399%KJ634273.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds36536586%2e-9799%KT381874.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds365365100%2e-9793%HQ234499.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds347347100%6e-9292%KF268949.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds342342100%2e-9091%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds342342100%2e-9091%KF268948.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds338338100%3e-8991%KF383115.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds329329100%2e-8690%KU963574.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds329329100%2e-8690%KF383116.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds329329100%2e-8690%HQ234500.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome320320100%8e-8489%KX198134.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome320320100%8e-8489%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome320320100%8e-8489%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome320320100%8e-8489%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds320320100%8e-8489%HQ234501.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds320320100%8e-8489%DQ859059.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds315315100%3e-8289%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome315315100%3e-8289%KU955594.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome315315100%3e-8289%AY632535.2Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome31331372%1e-8199%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31131171%4e-81100%KX101066.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds311311100%4e-8188%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID311311100%4e-8188%LC002520.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds311311100%4e-8188%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds311311100%4e-8188%KF383119.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds311311100%4e-8188%KF383117.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds311311100%4e-8188%HQ234498.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence306306100%2e-7988%KF383120.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds30230269%2e-78100%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds29729767%9e-77100%KX173844.1 Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 LOCUS KX261851 242 bp RNA linear VRL 20-MAY-2016 DEFINITION Zika virus isolate ZIKCOL01 polyprotein gene, partial cds. ACCESSION KX261851 VERSION KX261851.1 GI:1031621531 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 242) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Easy and inexpensive molecular detection of dengue, chikungunya and Zika viruses in febrile patients JOURNAL Unpublished REFERENCE 2 (bases 1 to 242) AUTHORS Calvo,E.P. and Castellanos,J.E. TITLE Direct Submission JOURNAL Submitted (19-MAY-2016) Virologia, Universidad El Bosque, Av. Cra 9 No. 131 a - 02 Edificio D, Bogota, Distrito Capital de Bogota 11001000, Colombia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..242 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKCOL01" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Colombia" /collection_date="Feb-2016" CDS <1..>242 /codon_start=2 /product="polyprotein" /protein_id="ANG09400.1" /db_xref="GI:1031621532" /translation="VMILLIALAYSIRCIGVSNRDLVEGMSGGTWVDVVLEHGGCVTV MAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMA" ORIGIN 1 ggtcatgata ctgctgattg ccctggcata cagcatcagg tgcataggag tcagcaatag 61 agacttagtg gaaggtatgt caggtgggac ttgggttgat gttgtcttgg aacatggagg 121 ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac atagagctgg ttacaacaac 181 agtcagcaac atggcggagg taagatccta ctgctatgag gcatcaatat cagacatggc 241 tc Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds437437100%4e-119100%KX261851.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds42642699%8e-11699%KX261853.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome42642699%8e-11699%KU922923.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds42542599%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds42342398%9e-11599%KU954085.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome42142199%3e-11499%KX262887.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome42142199%3e-11499%KX087101.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome42142199%3e-11499%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds42142199%3e-11499%KU937936.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42142199%3e-11499%KX101060.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome42142199%3e-11499%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome42142199%3e-11499%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome42142199%3e-11499%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome42142199%3e-11499%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome42142199%3e-11499%KU870645.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome42142199%3e-11499%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome42142199%3e-11499%KU922960.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds42142199%3e-11499%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds42142199%3e-11499%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome42142199%3e-11499%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome42142199%3e-11499%KU853012.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds42142199%3e-11499%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds42142199%3e-11499%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome42142199%3e-11499%KU527068.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds42142199%3e-11499%KU686218.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds42142199%3e-11499%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome42142199%3e-11499%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds42142199%3e-11499%KU365778.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds42142199%3e-11499%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds42142199%3e-11499%KU312313.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID42142199%3e-11499%AB908162.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome41741799%4e-11398%KX253996.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome41741799%4e-11398%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds41741799%4e-11398%KX247632.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds41741799%4e-11398%KU820897.2Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome41741799%4e-11398%KX197192.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds41741799%4e-11398%KX185891.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds41741799%4e-11398%KX173842.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds41741799%4e-11398%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds41741799%4e-11398%KX173840.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome41741799%4e-11398%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome41741799%4e-11398%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome41741799%4e-11398%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome41741799%4e-11398%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome41741799%4e-11398%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds41741799%4e-11398%KX056898.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds41741799%4e-11398%KU963796.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds41741799%4e-11398%KU991811.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome41741799%4e-11398%KU940227.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds41741799%4e-11398%KU955590.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds41741799%4e-11398%KU955589.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome41741799%4e-11398%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds41741799%4e-11398%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome41741799%4e-11398%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome41741799%4e-11398%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome41741799%4e-11398%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome41741799%4e-11398%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds41741799%4e-11398%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds41741799%4e-11398%KU501216.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds41741799%4e-11398%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds41741799%4e-11398%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds41741799%4e-11398%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds41741799%4e-11398%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome41741799%4e-11398%KU321639.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds41741799%4e-11398%KJ776791.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds41441496%5e-11299%KX261852.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome41241299%2e-11198%KU955593.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome41241299%2e-11198%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds41241299%2e-11198%JN860885.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds40840899%2e-11098%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome40840899%2e-11098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds40840899%2e-11098%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds40340399%9e-10997%EU545988.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds39939994%1e-10799%KX261855.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds39639693%1e-10699%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds39239293%2e-10598%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds39239293%2e-10598%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds39239293%2e-10598%KM212963.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds38338390%8e-10399%KU312315.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds38338390%8e-10399%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds37937990%1e-10198%KJ680134.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds36536585%2e-9799%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds36536585%2e-9799%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds36536585%2e-9799%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds36536585%2e-9799%KU926323.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds36536585%2e-9799%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds36036085%9e-9699%KU646827.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds36036085%9e-9699%KJ634273.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds35435499%4e-9493%HQ234499.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds34934999%2e-9292%KF268949.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds34234283%2e-9098%KT381874.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds34234298%2e-9092%KF383115.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds34034099%9e-9091%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds34034099%9e-9091%KF268948.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds33133199%4e-8790%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds33133199%4e-8790%HQ234500.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds32732799%5e-8690%KF383116.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome32232299%2e-8490%KX198134.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome32232299%2e-8490%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome32232299%2e-8490%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome32232299%2e-8490%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds32232299%2e-8490%HQ234501.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds32232299%2e-8490%DQ859059.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds31831899%3e-8389%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome31831899%3e-8389%KU955594.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome31831899%3e-8389%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds31631699%1e-8289%KF383117.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds31331399%1e-8189%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID31331399%1e-8189%LC002520.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds31331399%1e-8189%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds31331399%1e-8189%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds31331399%1e-8189%HQ234498.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence30430499%6e-7988%KF383120.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome29829869%3e-7799%KX101061.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome29729767%9e-77100%KX101066.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds28828865%5e-74100%KX173843.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds28628699%2e-7386%KF383118.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds28228264%2e-72100%KX173844.1 Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
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