niman Posted June 3, 2016 Report Share Posted June 3, 2016 (edited) Institut Pasteur de la Guyane has release 2015 Zika sequences from French Guiana (~2840 BP covering envelope gene) Edited June 3, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted June 3, 2016 Author Report Share Posted June 3, 2016 LOCUS KU758870 2865 bp RNA linear VRL 01-JUN-2016 DEFINITION Zika virus isolate 17160 polyprotein gene, partial cds. ACCESSION KU758870 VERSION KU758870.1 GI:1001229284 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 2865) AUTHORS Enfissi,A., Rousset,D., Matheus,S. and Kazanji,M. TITLE Direct Submission JOURNAL Submitted (25-FEB-2016) laboratoire de virologie, Institut Pasteur de la Guyane, 23 avenue Pasteur, Cayenne, French Guiana 97300, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Main Workbench 6 v. 6.9 Beta 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2865 /organism="Zika virus" /mol_type="genomic RNA" /isolate="17160" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Guiana" /collection_date="Dec-2015" CDS 89..>2865 /codon_start=1 /product="polyprotein" /protein_id="AML81021.1" /db_xref="GI:1001229285" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNN" mat_peptide 956..2473 /product="envelope protein" ORIGIN 1 tcagactgcg acagttcgag tttgaagcga aagctagcaa cagtatcaac aggttttatt 61 ttggatttgg aaacgagagt ttctggtcat gaaaaaccca aaaaagaaat ccggaggatt 121 ccggattgtc aatatgctaa aacgcggagt agcccgtgtg agcccctttg ggggcttgaa 181 gaggctgcca gccggacttc tgctgggtca tgggcccatc aggatggtct tggcgattct 241 agcctttttg agattcacgg caatcaagcc atcactgggt ctcatcaata gatggggttc 301 agtggggaaa aaagaggcta tggaaataat aaagaagttc aagaaagatc tggctgccat 361 gctgagaata atcaatgcta ggaaggagaa gaagagacga ggcgcagata ctagtgtcgg 421 aattgttggc ctcctgctga ccacagctat ggcagcggag gtcactagac gtgggagtgc 481 atactatatg tacttggaca gaaacgatgc tggggaggcc atatcttttc caaccacatt 541 ggggatgaat aagtgttata tacagatcat ggatcttgga cacatgtgtg atgccaccat 601 gagctatgaa tgccctatgc tggatgaggg ggtggaacca gatgacgtcg attgttggtg 661 caacacgacg tcaacttggg ttgtgtacgg aacctgccat cacaaaaaag gtgaagcacg 721 gagatctaga agagctgtga cgctcccctc ccattccact aggaagctgc aaacgcggtc 781 gcaaacctgg ttggaatcaa gagaatacac aaagcacttg attagagtcg aaaattggat 841 attcaggaac cctggcttcg cgttagcagc agctgccatc gcttggcttt tgggaagctc 901 aacgagccaa aaagtcatat acttggtcat gatactgctg attgccccgg catacagcat 961 caggtgcata ggagtcagca atagggactt tgtggaaggt atgtcaggtg ggacttgggt 1021 tgatgttgtc ttggaacatg gaggttgtgt caccgtaatg gcacaggaca aaccgactgt 1081 cgacatagag ctggttacaa caacagtcag caacatggcg gaggtaagat cctactgcta 1141 tgaggcatca atatcagaca tggcttcgga cagccgctgc ccaacacaag gtgaagccta 1201 ccttgacaag caatcagaca ctcaatatgt ctgcaaaaga acgttagtgg acagaggctg 1261 gggaaatgga tgtggacttt ttggcaaagg gagcctggtg acatgcgcta agtttgcatg 1321 ctccaagaaa atgaccggga agagcatcca gccagagaat ctggagtacc ggataatgct 1381 gtcagttcat ggctcccagc acagtgggat gatcgttaat gacacaggac atgaaactga 1441 tgagaataga gcgaaagttg agataacgcc caattcacca agagccgaag ccaccctggg 1501 gggttttgga agcctaggac ttgattgtga accgaggaca ggccttgact tttcagattt 1561 gtattacttg actatgaata acaagcactg gttggttcac aaggagtggt tccacgacat 1621 tccattacct tggcacgctg gggcagacac cggaactcca cactggaaca acaaagaagc 1681 actggtagag ttcaaggacg cacatgccaa aaggcaaact gtcgtggttc tagggagtca 1741 agaaggagca gttcacacgg cccttgctgg agctctggag gctgagatgg atggtgcaaa 1801 gggaaggctg tcctctggcc acttgaaatg tcgcctgaaa atggataaac ttagattgaa 1861 gggcgtgtca tactccttgt gtactgcagc gttcacattc accaagatcc cggctgaaac 1921 actgcacggg acagtcacag tggaggtaca gtacgcaggg acagatggac cttgcaaggt 1981 tccagctcag atggcggtgg acatgcaaac tctgacccca gttgggaggt tgataaccgc 2041 taaccccgta atcactgaaa gcactgagaa ctctaagatg atgctggaac ttgatccacc 2101 atttggggac tcttacattg tcataggagt cggggagaag aagatcaccc accactggca 2161 caggagtggc agcaccattg gaaaagcatt tgaagccact gtgagaggtg ccaagagaat 2221 ggcagtcttg ggagacacag cctgggactt tggatcagtt ggaggcgctc tcaactcatt 2281 gggcaagggc atccatcaaa tttttggagc agctttcaaa tcattgtttg gaggaatgtc 2341 ctggttctca caaattctca ttggaacgtt gctgatgtgg ttgggtctga acacaaagaa 2401 tggatctatt tcccttatgt gcttggcctt agggggagtg ttgatcttct tatccacagc 2461 cgtctctgct gatgtggggt gctcggtgga cttctcaaag aaggagacga gatgcggtac 2521 aggggtgttc gtctataacg acgttgaagc ctggagggac aggtacaagt accatcctga 2581 ctccccccgt agattggcag cagcagtcaa gcaagcctgg gaagatggta tctgcgggat 2641 ctcctctgtt tcaagaatgg aaaacatcat gtggagatca gtagaagggg agctcaacgc 2701 aatcctggaa gagaatggag ttcaactgac ggtcgttgtg ggatctgtaa aaaaccccat 2761 gtggagaggt ccacagagat tgcccgtgcc tgtgaacgag ctgccccacg gctggaaggc 2821 ttgggggaaa tcgtacttcg tcagagcagc aaagacaaat aacag Link to comment Share on other sites More sharing options...
niman Posted June 3, 2016 Author Report Share Posted June 3, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds49654965100%0.0100%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds49654965100%0.0100%KU758870.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds49604960100%0.099%KU312314.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds49564956100%0.099%KU758873.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome49564956100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds49564956100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds49564956100%0.099%KU365778.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds49514951100%0.099%KU758877.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome49514951100%0.099%KX262887.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds49514951100%0.099%KU937936.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds49514951100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds49514951100%0.099%KU365777.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds49474947100%0.099%KU758872.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome49474947100%0.099%KX280026.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds49474947100%0.099%KX247632.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds49424942100%0.099%KU758875.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome49424942100%0.099%KX051563.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds49424942100%0.099%KX056898.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome49424942100%0.099%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome49424942100%0.099%KU940228.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds49424942100%0.099%KU955590.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome49424942100%0.099%KU501215.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds49384938100%0.099%KU758876.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome49384938100%0.099%KX087101.2Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds49384938100%0.099%KU991811.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds49384938100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds49384938100%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds49384938100%0.099%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds49384938100%0.099%KU761564.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds49384938100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds49384938100%0.099%KU501216.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds49384938100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds49384938100%0.099%KJ776791.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds49334933100%0.099%KU758869.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome49334933100%0.099%KU527068.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds49334933100%0.099%KU312313.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome49334933100%0.099%KU321639.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds49294929100%0.099%KU758868.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome49294929100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome49294929100%0.099%KU926309.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome49294929100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome49294929100%0.099%KU853012.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds49244924100%0.099%KU758874.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome49244924100%0.099%KX247646.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome49244924100%0.099%KX156776.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome49244924100%0.099%KU870645.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds49244924100%0.099%KU729217.2Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome49204920100%0.099%KX253996.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds49204920100%0.099%KU820897.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome49204920100%0.099%KX198135.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds49204920100%0.099%KX185891.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome49204920100%0.099%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome49204920100%0.099%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome49204920100%0.099%KX087102.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds49204920100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds49204920100%0.099%KU955589.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome49204920100%0.099%KU922960.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds49204920100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome49204920100%0.099%KU820899.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome49204920100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds49204920100%0.099%KU647676.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome49154915100%0.099%KX156775.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome49154915100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome49154915100%0.099%KU922923.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome48664866100%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome48664866100%0.099%KU744693.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome4852485298%0.099%KU940224.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome47984798100%0.099%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds47984798100%0.099%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds47404740100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome47174717100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds4607460795%0.099%KF993678.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds44624462100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds36223622100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds36223622100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds36083608100%0.089%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds36083608100%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds36083608100%0.089%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds36083608100%0.089%HQ234498.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID35953595100%0.089%LC002520.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds35953595100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds35883588100%0.089%KF268949.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds35793579100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome35733573100%0.089%KU955594.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds35663566100%0.089%DQ859059.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds35623562100%0.089%KF383117.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome35593559100%0.089%AY632535.2Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome35413541100%0.089%KU955595.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome35353535100%0.088%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome35353535100%0.088%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome35323532100%0.088%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds35263526100%0.088%HQ234501.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds35053505100%0.088%KF383116.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds34563456100%0.088%KF383118.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds34403440100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds34403440100%0.088%HQ234500.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3415341568%0.099%KU312315.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds3378337868%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds3364336468%0.099%KU646827.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence2915291599%0.083%KF383120.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome2796364874%0.099%KX101060.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2695269554%0.099%KJ634273.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome2636400088%0.099%KX101066.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2060206042%0.099%KU686218.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds1658165833%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds1658165833%0.099%KX173840.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome1572382077%0.099%KX101061.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1526152630%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1516151630%0.099%KX173844.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds1303130326%0.099%KX212103.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds1139113923%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds1077107730%0.089%KF270886.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds1011101130%0.086%AF372422.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds98098027%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds97597527%0.089%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds96996927%0.089%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds96696627%0.089%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds96696627%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds96296227%0.088%KF383034.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds95795727%0.088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds95395327%0.088%KF383029.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds93993927%0.088%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds93993927%0.088%KF383038.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds93593527%0.088%KF383031.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds93093027%0.087%KF383046.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds93093027%0.087%KF383028.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds90690627%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds90290227%0.087%KF383043.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds89789727%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds89389327%0.086%KF383042.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds89289227%0.086%KF383035.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome890351375%0.0100%KU940227.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome884228448%0.099%KX101064.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds87587596%0.068%DQ859064.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome872186845%0.090%KX101067.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds86686627%0.086%KF383040.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID83883816%0.099%AB908162.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds72672627%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds72272227%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds72272227%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds71771727%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds71571527%0.081%KF383021.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds69969927%0.081%KF383019.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds64564513%2e-18099%KU985088.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds62562512%2e-17499%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds62162112%2e-17399%KX062044.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds58958911%1e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds58158111%2e-16199%KR815989.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds54054011%6e-14999%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds53853811%2e-14899%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds53653611%8e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds53553510%3e-147100%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds52952910%1e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds52952910%1e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds52952910%1e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds50850810%4e-139100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds50250210%2e-13799%KJ680134.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds4464469%1e-12099%KX261853.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds4394398%2e-118100%KX261855.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds4324328%2e-11699%KX261852.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds4284288%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254258%3e-11499%KU954085.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds4214218%4e-11399%KX261851.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174178%5e-112100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174178%5e-112100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174178%5e-112100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174178%5e-112100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4164168%2e-11199%KT381874.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome329145233%2e-8588%KX101065.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome295123024%4e-75100%KX101062.1 Link to comment Share on other sites More sharing options...
niman Posted June 3, 2016 Author Report Share Posted June 3, 2016 Sequence Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeUÂ Link to comment Share on other sites More sharing options...
niman Posted June 3, 2016 Author Report Share Posted June 3, 2016 LOCUS KU758871 2868 bp RNA linear VRL 01-JUN-2016 DEFINITION Zika virus isolate 17170 polyprotein gene, partial cds. ACCESSION KU758871 VERSION KU758871.1 GI:1001229286 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 2868) AUTHORS Enfissi,A., Rousset,D., Matheus,S. and Kazanji,M. TITLE Direct Submission JOURNAL Submitted (25-FEB-2016) laboratoire de virologie, Institut Pasteur de la Guyane, 23 avenue Pasteur, Cayenne, French Guiana 97300, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Main Workbench 6 v. 6.9 Beta 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2868 /organism="Zika virus" /mol_type="genomic RNA" /isolate="17170" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Guiana" /collection_date="Dec-2015" CDS 88..>2868 /codon_start=1 /product="polyprotein" /protein_id="AML81022.1" /db_xref="GI:1001229287" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSF" mat_peptide 955..2472 /product="envelope protein" ORIGIN 1 cagactgcga cagttcgagt ttgaagcgaa agctagcaac agtatcaaca ggttttattt 61 tggatttgga aacgagagtt tctggtcatg aaaaacccaa aaaagaaatc cggaggattc 121 cggattgtca atatgctaaa acgcggagta gcccgtgtga gcccctttgg gggcttgaag 181 aggctgccag ccggacttct gctgggtcat gggcccatca ggatggtctt ggcgattcta 241 gcctttttga gattcacggc aatcaagcca tcactgggtc tcatcaatag atggggttca 301 gtggggaaaa aagaggctat ggaaataata aagaagttca agaaagatct ggctgccatg 361 ctgagaataa tcaatgctag gaaggagaag aagagacgag gcgcagatac tagtgtcgga 421 attgttggcc tcctgctgac cacagctatg gcagcggagg tcactagacg tgggagtgca 481 tactatatgt acttggacag aaacgatgct ggggaggcca tatcttttcc aaccacattg 541 gggatgaata agtgttatat acagatcatg gatcttggac acatgtgtga tgccaccatg 601 agctatgaat gccctatgct ggatgagggg gtggaaccag atgacgtcga ttgttggtgc 661 aacacgacgt caacttgggt tgtgtacgga acctgccatc acaaaaaagg tgaagcacgg 721 agatctagaa gagctgtgac gctcccctcc cattccacta ggaagctgca aacgcggtcg 781 caaacctggt tggaatcaag agaatacaca aagcacttga ttagagtcga aaattggata 841 ttcaggaacc ctggcttcgc gttagcagca gctgccatcg cttggctttt gggaagctca 901 acgagccaaa aagtcatata cttggtcatg atactgctga ttgccccggc atacagcatc 961 aggtgcatag gagtcagcaa tagggacttt gtggaaggta tgtcaggtgg gacttgggtt 1021 gatgttgtct tggaacatgg aggttgtgtc accgtaatgg cacaggacaa accgactgtc 1081 gacatagagc tggttacaac aacagtcagc aacatggcgg aggtaagatc ctactgctat 1141 gaggcatcaa tatcagacat ggcttcggac agccgctgcc caacacaagg tgaagcctac 1201 cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa cgttagtgga cagaggctgg 1261 ggaaatggat gtggactttt tggcaaaggg agcctggtga catgcgctaa gtttgcatgc 1321 tccaagaaaa tgaccgggaa gagcatccag ccagagaatc tggagtaccg gataatgctg 1381 tcagttcatg gctcccagca cagtgggatg atcgttaatg acacaggaca tgaaactgat 1441 gagaatagag cgaaagttga gataacgccc aattcaccaa gagccgaagc caccctgggg 1501 ggttttggaa gcctaggact tgattgtgaa ccgaggacag gccttgactt ttcagatttg 1561 tattacttga ctatgaataa caagcactgg ttggttcaca aggagtggtt ccacgacatt 1621 ccattacctt ggcacgctgg ggcagacacc ggaactccac actggaacaa caaagaagca 1681 ctggtagagt tcaaggacgc acatgccaaa aggcaaactg tcgtggttct agggagtcaa 1741 gaaggagcag ttcacacggc ccttgctgga gctctggagg ctgagatgga tggtgcaaag 1801 ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa tggataaact tagattgaag 1861 ggcgtgtcat actccttgtg tactgcagcg ttcacattca ccaagatccc ggctgaaaca 1921 ctgcacggga cagtcacagt ggaggtacag tacgcaggga cagatggacc ttgcaaggtt 1981 ccagctcaga tggcggtgga catgcaaact ctgaccccag ttgggaggtt gataaccgct 2041 aaccccgtaa tcactgaaag cactgagaac tctaagatga tgctggaact tgatccacca 2101 tttggggact cttacattgt cataggagtc ggggagaaga agatcaccca ccactggcac 2161 aggagtggca gcaccattgg aaaagcattt gaagccactg tgagaggtgc caagagaatg 2221 gcagtcttgg gagacacagc ctgggacttt ggatcagttg gaggcgctct caactcattg 2281 ggcaagggca tccatcaaat ttttggagca gctttcaaat cattgtttgg aggaatgtcc 2341 tggttctcac aaattctcat tggaacgttg ctgatgtggt tgggtctgaa cacaaagaat 2401 ggatctattt cccttatgtg cttggcctta gggggagtgt tgatcttctt atccacagcc 2461 gtctctgctg atgtggggtg ctcggtggac ttctcaaaga aggagacgag atgcggtaca 2521 ggggtgttcg tctataacga cgttgaagcc tggagggaca ggtacaagta ccatcctgac 2581 tccccccgta gattggcagc agcagtcaag caagcctggg aagatggtat ctgcgggatc 2641 tcctctgttt caagaatgga aaacatcatg tggagatcag tagaagggga gctcaacgca 2701 atcctggaag agaatggagt tcaactgacg gtcgttgtgg gatctgtaaa aaaccccatg 2761 tggagaggtc cacagagatt gcccgtgcct gtgaacgagc tgccccacgg ctggaaggct 2821 tgggggaaat cgtacttcgt cagagcagca aagacaaata acagcttt Link to comment Share on other sites More sharing options...
niman Posted June 3, 2016 Author Report Share Posted June 3, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds49654965100%0.0100%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds49654965100%0.0100%KU758870.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds49604960100%0.099%KU312314.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds49564956100%0.099%KU758873.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome49564956100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds49564956100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds49564956100%0.099%KU365778.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds49514951100%0.099%KU758877.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome49514951100%0.099%KX262887.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds49514951100%0.099%KU937936.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds49514951100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds49514951100%0.099%KU365777.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds49474947100%0.099%KU758872.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome49474947100%0.099%KX280026.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds49474947100%0.099%KX247632.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds49424942100%0.099%KU758875.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome49424942100%0.099%KX051563.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds49424942100%0.099%KX056898.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome49424942100%0.099%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome49424942100%0.099%KU940228.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds49424942100%0.099%KU955590.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome49424942100%0.099%KU501215.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds49384938100%0.099%KU758876.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome49384938100%0.099%KX087101.2Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds49384938100%0.099%KU991811.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds49384938100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds49384938100%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds49384938100%0.099%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds49384938100%0.099%KU761564.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds49384938100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds49384938100%0.099%KU501216.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds49384938100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds49384938100%0.099%KJ776791.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds49334933100%0.099%KU758869.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome49334933100%0.099%KU527068.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds49334933100%0.099%KU312313.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome49334933100%0.099%KU321639.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds49294929100%0.099%KU758868.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome49294929100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome49294929100%0.099%KU926309.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome49294929100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome49294929100%0.099%KU853012.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds49244924100%0.099%KU758874.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome49244924100%0.099%KX247646.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome49244924100%0.099%KX156776.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome49244924100%0.099%KU870645.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds49244924100%0.099%KU729217.2Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome49204920100%0.099%KX253996.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds49204920100%0.099%KU820897.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome49204920100%0.099%KX198135.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds49204920100%0.099%KX185891.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome49204920100%0.099%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome49204920100%0.099%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome49204920100%0.099%KX087102.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds49204920100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds49204920100%0.099%KU955589.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome49204920100%0.099%KU922960.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds49204920100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome49204920100%0.099%KU820899.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome49204920100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds49204920100%0.099%KU647676.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome49154915100%0.099%KX156775.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome49154915100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome49154915100%0.099%KU922923.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome48664866100%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome48664866100%0.099%KU744693.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome4852485298%0.099%KU940224.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome47984798100%0.099%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds47984798100%0.099%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds47404740100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome47174717100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds4607460795%0.099%KF993678.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds44624462100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds36223622100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds36223622100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds36083608100%0.089%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds36083608100%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds36083608100%0.089%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds36083608100%0.089%HQ234498.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID35953595100%0.089%LC002520.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds35953595100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds35883588100%0.089%KF268949.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds35793579100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome35733573100%0.089%KU955594.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds35663566100%0.089%DQ859059.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds35623562100%0.089%KF383117.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome35593559100%0.089%AY632535.2Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome35413541100%0.089%KU955595.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome35353535100%0.088%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome35353535100%0.088%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome35323532100%0.088%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds35263526100%0.088%HQ234501.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds35053505100%0.088%KF383116.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds34563456100%0.088%KF383118.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds34403440100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds34403440100%0.088%HQ234500.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3415341568%0.099%KU312315.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds3378337868%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds3364336468%0.099%KU646827.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence2915291599%0.083%KF383120.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome2796364874%0.099%KX101060.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2695269554%0.099%KJ634273.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome2636400088%0.099%KX101066.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2060206042%0.099%KU686218.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds1658165833%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds1658165833%0.099%KX173840.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome1572382077%0.099%KX101061.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1526152630%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1516151630%0.099%KX173844.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds1303130326%0.099%KX212103.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds1139113923%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds1077107730%0.089%KF270886.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds1011101130%0.086%AF372422.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds98098027%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds97597527%0.089%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds96996927%0.089%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds96696627%0.089%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds96696627%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds96296227%0.088%KF383034.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds95795727%0.088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds95395327%0.088%KF383029.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds93993927%0.088%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds93993927%0.088%KF383038.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds93593527%0.088%KF383031.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds93093027%0.087%KF383046.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds93093027%0.087%KF383028.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds90690627%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds90290227%0.087%KF383043.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds89789727%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds89389327%0.086%KF383042.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds89289227%0.086%KF383035.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome890351375%0.0100%KU940227.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome884228448%0.099%KX101064.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds87587596%0.068%DQ859064.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome872186845%0.090%KX101067.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds86686627%0.086%KF383040.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID83883816%0.099%AB908162.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds72672627%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds72272227%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds72272227%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds71771727%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds71571527%0.081%KF383021.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds69969927%0.081%KF383019.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds64564513%2e-18099%KU985088.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds62562512%2e-17499%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds62162112%2e-17399%KX062044.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds58958911%1e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds58158111%2e-16199%KR815989.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds54054011%6e-14999%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds53853811%2e-14899%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds53653611%8e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds53553510%3e-147100%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds52952910%1e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds52952910%1e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds52952910%1e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds50850810%4e-139100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds50250210%2e-13799%KJ680134.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds4464469%1e-12099%KX261853.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds4394398%2e-118100%KX261855.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds4324328%2e-11699%KX261852.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds4284288%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254258%3e-11499%KU954085.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds4214218%4e-11399%KX261851.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174178%5e-112100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174178%5e-112100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174178%5e-112100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174178%5e-112100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4164168%2e-11199%KT381874.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome329145233%2e-8588%KX101065.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome295123024%4e-75100%KX101062.1 Link to comment Share on other sites More sharing options...
niman Posted June 3, 2016 Author Report Share Posted June 3, 2016 LOCUS KU758876 2864 bp RNA linear VRL 01-JUN-2016 DEFINITION Zika virus isolate 21068 polyprotein gene, partial cds. ACCESSION KU758876 VERSION KU758876.1 GI:1001229296 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 2864) AUTHORS Enfissi,A., Rousset,D., Matheus,S., Codrington,J., Zonneveld,R. and Kazanji,M. TITLE Direct Submission JOURNAL Submitted (25-FEB-2016) laboratoire de virologie, Institut Pasteur de la Guyane, 23 avenue Pasteur, Cayenne, French Guiana 97300, France COMMENT ##Assembly-Data-START## Assembly Method :: CLC Main Workbench 6 v. 6.9 Beta 4 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2864 /organism="Zika virus" /mol_type="genomic RNA" /isolate="21068" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="Suriname" /collection_date="Dec-2015" CDS 87..>2864 /codon_start=1 /product="polyprotein" /protein_id="AML81027.1" /db_xref="GI:1001229297" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGVKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISFMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNS" mat_peptide 954..2471 /product="envelope protein" ORIGIN 1 agactgcgac agttcgagtt tgaagcgaaa gctagcaaca gtatcaacag gttttatttt 61 ggatttggaa acgagagttt ctggtcatga aaaacccaaa aaagaaatcc ggaggattcc 121 ggattgtcaa tatgctaaaa cgcggagtag cccgtgtgag cccctttggg ggcttgaaga 181 ggctgccagc cggacttctg ctgggtcatg ggcccatcag gatggtcctg gcgattctag 241 cctttttgag attcacggca atcaagccat cactgggtct catcaataga tggggttcag 301 tggggaaaaa agaggctatg gaaataataa agaagttcaa gaaagatctg gctgccatgc 361 tgagaataat caatgctagg aaggagaaga agagacgagg cgcagatact agtgtcggaa 421 ttgttggcct cctgctgacc acagctatgg cagcggaggt cactagacgt gggagtgcat 481 actatatgta cttggacaga aacgatgctg gggaggccat atcttttcca accacattgg 541 ggatgaataa gtgttatata cagatcatgg atcttggaca catgtgtgat gccaccatga 601 gctatgaatg ccctatgctg gatgaggggg tggaaccaga tgacgtcgat tgttggtgca 661 acacgacgtc aacttgggtt gtgtacggaa cctgccatca caaaaaaggt gaagcacgga 721 gatctagaag agctgtgacg ctcccctccc attccactag gaagctgcaa acgcggtcgc 781 aaacctggtt ggaatcaaga gaatacacaa agcacttgat tagagtcgaa aattggatat 841 tcaggaaccc tggcttcgcg ttagcagcag ctgccatcgc ttggcttttg ggaagctcaa 901 cgagccaaaa agtcatatac ttggtcatga tactgctgat tgccccggca tacagcatca 961 ggtgcatagg agtcagcaat agggactttg tggaaggtat gtcaggtggg acttgggttg 1021 atgttgtctt ggaacatgga ggttgtgtca ccgtaatggc acaggacaaa ccgactgtcg 1081 acatagagct ggttacaaca acagtcagca acatggcgga ggtaagatcc tactgctatg 1141 aggcatcaat atcagacatg gcttcggaca gccgctgccc aacacaaggt gaagcctacc 1201 ttgacaagca atcagacact caatatgtct gcaaaagaac gttagtggac agaggctggg 1261 gaaatggatg tggacttttt ggcaaaggga gcctggtgac atgcgctaag tttgcatgct 1321 ccaagaaaat gaccgggaag agcatccagc cagagaatct ggagtaccgg ataatgctgt 1381 cagttcatgg ctcccagcac agtgggatga tcgttaatga cacaggacat gaaactgatg 1441 agaatagagc gaaagttgag ataacgccca attcaccaag agccgaagcc accctggggg 1501 gttttggaag cctaggactt gattgtgaac cgaggacagg ccttgacttt tcagatttgt 1561 attacttgac tatgaataac aagcactggt tggttcacaa ggagtggttc cacgacattc 1621 cattaccttg gcacgctggg gcagacaccg gaactccaca ctggaacaac aaagaagcac 1681 tggtagagtt caaggacgca catgccaaaa ggcaaactgt cgtggttcta gggagtcaag 1741 aaggagcagt tcacacggcc cttgctggag ctctggaggc tgagatggat ggtgtaaagg 1801 gaaggctgtc ctctggccac ttgaaatgtc gcctgaaaat ggataaactt agattgaagg 1861 gcgtgtcata ctccttgtgt actgcagcgt tcacattcac caagatcccg gctgaaacac 1921 tgcacgggac agtcacagtg gaggtacagt acgcagggac agatggacct tgcaaggttc 1981 cagctcagat ggcggtggac atgcaaactc tgaccccagt tgggaggttg ataaccgcta 2041 accccgtaat cactgaaagc actgagaact ctaaaatgat gctggaactt gatccaccat 2101 ttggggactc ttacattgtc ataggagtcg gggagaagaa gatcacccac cactggcaca 2161 ggagtggcag caccattgga aaagcatttg aagccactgt gagaggtgcc aagagaatgg 2221 cagtcttagg agacacagcc tgggactttg gatcagttgg aggcgctctc aactcattgg 2281 gcaagggcat ccatcaaatt tttggagcag ctttcaaatc attgtttgga ggaatgtcct 2341 ggttctcaca aattctcatt ggaacgttgc tgatgtggtt gggtctgaac acaaagaatg 2401 gatctatttc ctttatgtgc ttggccttag ggggagtgtt gatcttctta tccacagccg 2461 tctctgctga tgtggggtgc tcggtggact tctcaaagaa ggagacgaga tgcggtacag 2521 gggtgttcgt ctataacgac gttgaagcct ggagggacag gtacaagtac catcctgact 2581 ccccccgtag attggcagcg gcagtcaagc aagcctggga agatggtatc tgcgggatct 2641 cctctgtttc aagaatggaa aacatcatgt ggagatcagt agaaggggag ctcaacgcaa 2701 tcctggaaga gaatggagtt caactgacgg tcgttgtggg atctgtaaaa aaccccatgt 2761 ggagaggtcc acagagattg cccgtgcctg tgaacgagct gccccacggc tggaaggctt 2821 gggggaaatc gtacttcgtc agagcagcaa agacaaataa cagc Link to comment Share on other sites More sharing options...
niman Posted June 3, 2016 Author Report Share Posted June 3, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds49654965100%0.0100%KU758876.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds49424942100%0.099%KU937936.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds49384938100%0.099%KU758873.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds49384938100%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds49384938100%0.099%KU758870.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds49334933100%0.099%KU758877.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds49334933100%0.099%KU312314.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds49294929100%0.099%KU758872.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome49294929100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds49294929100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds49294929100%0.099%KU365778.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome49244924100%0.099%KX262887.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds49244924100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds49244924100%0.099%KU365777.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome49204920100%0.099%KX280026.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds49204920100%0.099%KX247632.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds49154915100%0.099%KU758875.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome49154915100%0.099%KX051563.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds49154915100%0.099%KX056898.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome49154915100%0.099%KU509998.3Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome49154915100%0.099%KU940228.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds49154915100%0.099%KU955590.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome49154915100%0.099%KU501215.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome49114911100%0.099%KX087101.2Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds49114911100%0.099%KU991811.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds49114911100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds49114911100%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds49114911100%0.099%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds49114911100%0.099%KU761564.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds49114911100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds49114911100%0.099%KU501216.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds49114911100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds49114911100%0.099%KJ776791.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds49064906100%0.099%KU758869.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome49064906100%0.099%KU527068.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds49064906100%0.099%KU312313.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome49064906100%0.099%KU321639.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds49024902100%0.099%KU758868.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome49024902100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome49024902100%0.099%KU926309.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome49024902100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome49024902100%0.099%KU853012.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds48974897100%0.099%KU758874.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome48974897100%0.099%KX247646.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome48974897100%0.099%KX156776.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome48974897100%0.099%KU870645.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds48974897100%0.099%KU729217.2Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome48934893100%0.099%KX253996.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds48934893100%0.099%KU820897.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome48934893100%0.099%KX198135.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds48934893100%0.099%KX185891.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome48934893100%0.099%KX156774.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome48934893100%0.099%KX117076.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome48934893100%0.099%KX087102.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds48934893100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds48934893100%0.099%KU955589.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome48934893100%0.099%KU922960.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds48934893100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome48934893100%0.099%KU820899.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome48934893100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds48934893100%0.099%KU647676.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome48884888100%0.099%KX156775.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome48884888100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome48884888100%0.099%KU922923.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome48394839100%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome48394839100%0.099%KU744693.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome4825482598%0.099%KU940224.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome47714771100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds47714771100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds47134713100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome46904690100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds4580458095%0.098%KF993678.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds44354435100%0.096%HQ234499.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds35953595100%0.089%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds35953595100%0.089%KF268948.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds35803580100%0.089%KU720415.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds35803580100%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds35803580100%0.089%KF383119.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds35803580100%0.089%HQ234498.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID35683568100%0.089%LC002520.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds35683568100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds35613561100%0.089%KF268949.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds35523552100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome35463546100%0.089%KU955594.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds35393539100%0.088%DQ859059.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds35353535100%0.088%KF383117.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome35323532100%0.088%AY632535.2Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome35143514100%0.088%KU955595.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome35083508100%0.088%KX198134.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome35083508100%0.088%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome35053505100%0.088%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds34993499100%0.088%HQ234501.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds34783478100%0.088%KF383116.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds34293429100%0.088%KF383118.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds34133413100%0.087%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds34133413100%0.087%HQ234500.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3393339368%0.099%KU312315.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds3355335568%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds3342334268%0.099%KU646827.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence2906290699%0.083%KF383120.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome2783363574%0.099%KX101060.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2677267754%0.099%KJ634273.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome2612397188%0.099%KX101066.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2057205742%0.099%KU686218.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds1654165433%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds1654165433%0.099%KX173840.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome1557379777%0.099%KX101061.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1523152330%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds1512151230%0.099%KX173844.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds1290129026%0.099%KX212103.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds1133113323%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds1068106830%0.088%KF270886.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds1002100230%0.086%AF372422.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds97197127%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds96696627%0.088%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds96096027%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds95795727%0.088%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds95795727%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds95395327%0.088%KF383034.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds94894827%0.088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds94494427%0.088%KF383029.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds93993927%0.088%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds93993927%0.088%KF383038.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds93093027%0.087%KF383046.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds92692627%0.087%KF383031.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds92192127%0.087%KF383028.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds90690627%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds90290227%0.087%KF383043.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds89789727%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds89389327%0.086%KF383042.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds88388327%0.086%KF383035.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome881349575%0.099%KU940227.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome875226948%0.099%KX101064.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds87287296%0.068%DQ859064.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome866185345%0.090%KX101067.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds86686627%0.086%KF383040.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID83883816%0.099%AB908162.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds72672627%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds72272227%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds72272227%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds71771727%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds71571527%0.081%KF383021.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds69969927%0.081%KF383019.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds64564513%2e-18099%KU985088.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds62162112%2e-17399%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds61661612%1e-17199%KX062044.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds58958911%1e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds57857811%3e-16099%KR815989.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds53653611%8e-14899%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds53553511%3e-14799%KR816333.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds53553510%3e-147100%KM212966.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds53153111%3e-14698%KR816335.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds52952910%1e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds52952910%1e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds52952910%1e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds50850810%4e-139100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds50250210%2e-13799%KJ680134.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds4464469%1e-12099%KX261853.1Select seq gb|KX261855.1|Zika virus isolate ZIKCOL16 polyprotein gene, partial cds4394398%2e-118100%KX261855.1Select seq gb|KX261852.1|Zika virus isolate ZIKCOL06 polyprotein gene, partial cds4324328%2e-11699%KX261852.1Select seq gb|KX261854.1|Zika virus isolate ZIKCOL11 polyprotein gene, partial cds4284288%3e-11599%KX261854.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254258%3e-11499%KU954085.1Select seq gb|KX261851.1|Zika virus isolate ZIKCOL01 polyprotein gene, partial cds4214218%4e-11399%KX261851.1Select seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds4174178%5e-112100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds4174178%5e-112100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds4174178%5e-112100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds4174178%5e-112100%KU926323.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds4164168%2e-11199%KT381874.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome329144933%2e-8588%KX101065.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome295122424%4e-75100%KX101062.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome288100322%6e-7386%KX101063.1 Link to comment Share on other sites More sharing options...
niman Posted June 4, 2016 Author Report Share Posted June 4, 2016 Circular Cladogram - 2753 BP from Codon 1 Link to comment Share on other sites More sharing options...
niman Posted June 4, 2016 Author Report Share Posted June 4, 2016 Circular Phylogram 2735 BP from codon 1 Link to comment Share on other sites More sharing options...
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