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Partial 2015 Zika Sequence In Brazil


niman

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LOCUS       KX212103                2809 bp    RNA     linear   VRL 01-JUN-2016
DEFINITION  Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds.
ACCESSION   KX212103
VERSION     KX212103.1  GI:1029979765
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 2809)
  AUTHORS   Garcez,P., Nascimento,J.M., Vasconcelos,J.M., da Costa,R.M.,
            Delvecchio,R., Trindade,P., Loiola,E.C., Higa,L.M., Cassoli,J.,
            Vitoria,G., Sequeira,P., Sochacki,J., Aguiar,R., Fuzii,H.T., de
            Filippis,A.M.B., Vianez,J.L.S.G. Jr., Martins-de-Souza,D.,
            Tanuri,A. and Rehen,S.K.
  TITLE     Zika virus alters molecular fingerprinting in neural progenitors
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2809)
  AUTHORS   Vasconcelos,J.M., Sequeira,P.C., Higa,L.M., Lemos,P.S., de
            Oliveira,R.S., Silva,S.P., de Filippis,A.M.B. and Tanuri,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2016) Center for Technological Innovation,
            Evandro Chagas Institute, BR-316 KM 7, Ananindeua, PA 67030-000,
            Brazil
FEATURES             Location/Qualifiers
     source          1..2809
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="BRZIKV_AB_ES"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Brazil"
                     /collection_date="01-Sep-2015"
     CDS             <1..>2809
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="ANF29038.1"
                     /db_xref="GI:1029979766"
                     /translation="IVIGVGEKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWD
                     FGSVGGALNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMC
                     LALGGVLIFLSTAVSADVGCSVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRL
                     AAAVKQAWEDGICGISSVSRMENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRG
                     PQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDH
                     GFGVFHTSVWLKVREDYSLECDPAVIGTAVKGREAVHSDLGYWIESEKNDTWRLKRAH
                     LIEMKTCEWPKSHTLWTDGIEESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHGEELE
                     IRFEECPGTKVHVEETCGTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYG
                     MEIRPRKEPESNLVRSMVTAGSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSM
                     AVLVAMILGGFSMSDLAKLAILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFR
                     ANWTPRESMLLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAI
                     LAALTPLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPI
                     NVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVV
                     SGKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVV
                     LMTICGMNPIAIPFAAGAWYVYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRL
                     LGSTQVGVGVMQEGVFHTMWHVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAA
                     WDGHSEVQLLAVPPGERARNIQ"
ORIGIN      
        1 attgtcatag gagtcgggga gaagaagatc acccaccact ggcacaggag tggcagcacc
       61 attggaaaag catttgaagc cactgtgaga ggtgccaaga gaatggcagt cttgggagac
      121 acggcctggg actttggatc agttggaggc gctctcaact cattgggcaa gggcatccat
      181 caaatttttg gagcagcttt caaatcattg tttggaggaa tgtcctggtt ctcacaaatt
      241 ctcattggaa cgttgctgat gtggttgggt ctgaacacaa agaatggatc tatttccctt
      301 atgtgcttgg ccttaggggg agtgttgatc ttcttatcca cagccgtctc tgctgatgtg
      361 gggtgctcgg tggacttctc aaagaaggag acgagatgcg gtacaggggt gttcgtctat
      421 aacgacgttg aagcctggag ggacaggtac aagtaccatc ctgactcccc ccgtagattg
      481 gcagcagcag tcaagcaagc ctgggaagat ggtatctgcg ggatctcctc tgtttcaaga
      541 atggaaaaca tcatgtggag atcagtagaa ggggagctca acgcaatcct ggaagagaat
      601 ggagttcaac tgacggtcgt tgtgggatct gtaaaaaacc ccatgtggag aggtccacag
      661 agattgcccg tgcctgtgaa cgagctgccc cacggctgga aggcttgggg gaaatcgtac
      721 ttcgtcagag cagcaaagac aaataacagc tttgtcgtgg atggtgacac actgaaggaa
      781 tgcccactca aacatagagc atggaacagc tttcttgtgg aggatcatgg gttcggggta
      841 tttcacacta gtgtctggct caaggttaga gaagattatt cattagagtg tgatccagcc
      901 gttattggga cagctgttaa gggaagggag gctgtacaca gtgatctagg ctactggatt
      961 gagagtgaga agaatgacac atggaggctg aagagggccc atctgatcga gatgaaaaca
     1021 tgtgaatggc caaagtccca cacattgtgg acagatggaa tagaagagag tgatctgatc
     1081 atacccaagt ctttagctgg gccactcagc catcacaata ccagagaggg ctacaggacc
     1141 caaatgaaag ggccatggca cggtgaagag cttgaaattc ggtttgagga atgcccaggc
     1201 actaaggtcc acgtggagga aacatgtgga acaagaggac catctctgag atcaaccact
     1261 gcaagcggaa gggtgatcga ggaatggtgc tgcagggagt gcacaatgcc cccactgtcg
     1321 ttccgggcta aagatggctg ttggtatgga atggagataa ggcccaggaa agaaccagaa
     1381 agcaacttag taaggtcaat ggtgactgca ggatcaactg atcacatgga tcacttctcc
     1441 cttggagtgc ttgtgattct gctcatggtg caggaagggc tgaagaagag aatgaccaca
     1501 aagatcatca taagcacatc aatggcagtg ctggtagcta tgatcctggg aggattttca
     1561 atgagtgacc tggctaagct tgcaattttg atgggtgcca ccttcgcgga aatgaacact
     1621 ggaggagatg tagctcatct ggcgctgata gcggcattca aagtcagacc agcgttgctg
     1681 gtatctttca tcttcagagc taattggaca ccccgtgaaa gcatgctgct ggccttggcc
     1741 tcgtgtcttt tgcaaactgc gatctccgcc ttggaaggcg acctgatggt tctcatcaat
     1801 ggttttgctt tggcctggtt ggcaatacga gcgatggttg ttccacgcac tgataacatc
     1861 accttggcaa tcctggctgc tctgacacca ctggcccggg gcacactgct tgtggcgtgg
     1921 agagcaggcc ttgctacttg cggggggttt atgctcctct ctctgaaggg aaaaggcagt
     1981 gtgaagaaga acttaccatt tgtcatggcc ctgggactaa ccgctgtgag gctggtcgac
     2041 cccatcaacg tggtgggact gctgttgctc acaaggagtg ggaagcggag ctggccccct
     2101 agcgaagtac tcacagctgt tggcctgata tgcgcattgg ctggagggtt cgccaaggca
     2161 gatatagaga tggctgggcc catggccgcg gtcggtctgc taattgtcag ttacgtggtc
     2221 tcaggaaaga gcgtggacat gtacattgaa agagcaggtg acatcacatg ggaaaaagat
     2281 gcggaagtca ctggaaacag tccccggctc gatgtggcgc tagatgagag tggtgatttc
     2341 tccctggtgg aggatgacgg tccccccatg agagagatca tactcaaggt ggtcctgatg
     2401 accatctgtg gcatgaaccc aatagccata ccctttgcag ctggagcgtg gtacgtatac
     2461 gtgaagactg gaaaaaggag tggtgctcta tgggatgtgc ctgctcccaa ggaagtaaaa
     2521 aagggggaga ccacagatgg agtgtacaga gtaatgactc gtagactgct aggttcaaca
     2581 caagttggag tgggagttat gcaagagggg gtctttcaca ctatgtggca cgtcacaaaa
     2641 ggatccgcgc tgagaagcgg tgaagggaga cttgatccat actggggaga tgtcaagcag
     2701 gatctggtgt catactgtgg tccatggaag ctagatgccg cctgggacgg gcacagcgag
     2761 gtgcagctct tggccgtgcc ccccggagag agagcgagga acatccaga
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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
50665066100%0.0100%KX212103.1
50435043100%0.099%KU729218.1
50395039100%0.099%KU940228.1
50395039100%0.099%KU707826.1
50395039100%0.099%KU365780.1
50395039100%0.099%KU365779.1
50395039100%0.099%KU365777.1
50345034100%0.099%KX280026.1
50345034100%0.099%KU509998.3
50345034100%0.099%KU940224.1
50345034100%0.099%KU321639.1
50305030100%0.099%KX197192.1
50255025100%0.099%KX087101.2
50255025100%0.099%KU926310.1
50255025100%0.099%KU501215.1
50255025100%0.099%KJ776791.1
50215021100%0.099%KU758877.1
50215021100%0.099%KX262887.1
50215021100%0.099%KX198135.1
50215021100%0.099%KU955590.1
50215021100%0.099%KU501217.1
50215021100%0.099%KU501216.1
50215021100%0.099%KU365778.1
50215021100%0.099%KU312312.1
50165016100%0.099%KX051563.1
50165016100%0.099%KX056898.1
50165016100%0.099%KU926309.1
50165016100%0.099%KU853013.1
50165016100%0.099%KU497555.1
50145014100%0.099%KU853012.1
50125012100%0.099%KX247632.1
50125012100%0.099%KU991811.1
50125012100%0.099%KU870645.1
50125012100%0.099%KU729217.2
50075007100%0.099%KX156776.1
50075007100%0.099%KX156775.1
50075007100%0.099%KX117076.1
50075007100%0.099%KU820898.1
50075007100%0.099%KU740184.2
50075007100%0.099%KU761564.1
50075007100%0.099%KU647676.1
50035003100%0.099%KX253996.1
50035003100%0.099%KX247646.1
50035003100%0.099%KU820897.2
50035003100%0.099%KX185891.1
50035003100%0.099%KU937936.1
50035003100%0.099%KX156774.1
50035003100%0.099%KX087102.1
50035003100%0.099%KU963796.1
50035003100%0.099%KU955589.1
50035003100%0.099%KU922960.1
50035003100%0.099%KU922923.1
50035003100%0.099%KU820899.2
49984998100%0.099%KU866423.1
49944994100%0.099%KU527068.1
49714971100%0.099%KU744693.1
49174917100%0.099%KU681081.3
48864886100%0.099%KF993678.1
48324832100%0.098%KU955593.1
48324832100%0.098%JN860885.1
47824782100%0.098%KU681082.3
47804780100%0.098%EU545988.1
44864486100%0.095%HQ234499.1
4464464894%0.098%KU940227.1
36363636100%0.089%KF268949.1
36333633100%0.089%KF268948.1
36263626100%0.089%KF268950.1
36153615100%0.089%KF383115.1
35973597100%0.088%KU963573.1
35973597100%0.088%KU955594.1
35973597100%0.088%KU720415.1
35973665100%0.088%KF383118.1
35973597100%0.088%HQ234498.1
35913591100%0.088%LC002520.1
35913591100%0.088%DQ859059.1
35913591100%0.088%AY632535.2
35883588100%0.088%KF383121.1
35883588100%0.088%KF383119.1
35483548100%0.088%KF383116.1
35433543100%0.088%HQ234501.1
35373537100%0.088%KU955595.1
35373537100%0.088%KU955592.1
35373537100%0.088%KU955591.1
35344016100%0.088%KX198134.1
35253525100%0.088%HQ234500.1
35193627100%0.088%KU963574.1
34983498100%0.088%KF383117.1
3047304799%0.084%KF383120.1
2576257651%0.099%KU646827.1
2571257151%0.099%KU646828.1
2277350778%0.092%KX101064.1
1925192538%0.099%KU740199.1
1786381376%0.099%KX101066.1
1573334978%0.091%KX101061.1
1375137527%0.099%KU758875.1
1353135326%0.099%KU758871.1
1350135026%0.099%KU758873.1
1350135026%0.099%KU312315.1
1350135026%0.099%KU312314.1
1346134626%0.099%KU758872.1
1346134626%0.099%KU758870.1
1346134626%0.099%KU312313.1
1335133526%0.099%KU758876.1
1310131026%0.099%KU758869.1
1290129025%0.099%KU758874.1
1285128525%0.099%KU758868.1
1180264553%0.099%KX101063.1
991265053%0.097%KX101060.1
88388317%0.0100%KX247638.1
87787717%0.099%KU978616.1
852253360%0.085%KX101065.1
820238949%0.096%KX101062.1
82082016%0.099%KU872850.1
809287761%0.091%KX101067.1
691109983%0.070%DQ859064.1
63063012%5e-17699%KJ634273.1
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