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2015 Panama Zika Sequences

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Gorgas Institute For Health Studies Memorial Institute in Panama has released 5 partial 2015 Panama sequences.

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LOCUS       KU724096                 726 bp    RNA     linear   VRL 11-JUN-2016
DEFINITION  Zika virus isolate 259249_2015_Panama NS5B gene, partial cds.
ACCESSION   KU724096
VERSION     KU724096.1  GI:998178886
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Arauz,D., De Urriola,L., Jones,J., Castillo,M., Martinez,A.,
            Murillo,E., Troncoso,L., Chen,M., Abrego,L., Armien,B.,
            Pascale,J.M., Sosa,N., Lopez-Verges,S. and Moreno,B.
  TITLE     Febrile or Exanthematous Illness Associated with Zika, Dengue, and
            Chikungunya Viruses, Panama
  JOURNAL   Emerging Infect. Dis. 22 (8) (2016) In press
   PUBMED   27139219
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Arauz,D. Sr., De Urriola,L., Castillo,M., Martinez,A.A.,
            Murillo,E., Pascale,J.M., Sosa,N., Lopez-Verges,S. and Moreno,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2016) Departament of Research in Virology and
            Biotechnology, Gorgas Institute For Health Studies Memorial
            Institute, Ave. Justo Arosemena 35th Street, Panama, Panama
            0816-02593, Panama
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: Sequencher v. 4.5
            Coverage              :: partial
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="259249_2015_Panama"
                     /isolation_source="serum"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Panama"
                     /collection_date="11-Dec-2015"
     CDS             <1..>726
                     /codon_start=1
                     /product="NS5B"
                     /protein_id="AMK26952.1"
                     /db_xref="GI:998178887"
                     /translation="ISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAE
                     KGKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEK
                     VTNWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGW
                     DNWEEVPFCSHHFNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSY
                     AQMWQLLYFHRRDLRLMANAICSS"
ORIGIN      
        1 attagcaggt ttgatctgga gaatgaagct ctaatcacca accaaatgga gaaagggcac
       61 agggccttgg cattggccat aatcaagtac acataccaaa acaaagtggt aaaggtcctt
      121 agaccagctg aaaaagggaa aacagttatg gacattattt cgagacaaga ccaaaggggg
      181 agcggacaag ttgtcactta cgctcttaac acatttacca acctagtggt gcaactcatt
      241 cggaatatgg aggctgagga agttctagag atgcaagact tgtggctgct gcggaggtca
      301 gagaaagtga ccaactggtt gcagagcaac ggatgggata ggctcaaacg aatggcagtc
      361 agtggagatg attgcgttgt gaagccaatt gatgataggt ttgcacatgc cctcaggttc
      421 ttgaatgata tgggaaaagt taggaaggac acacaagagt ggaaaccctc aactggatgg
      481 gacaactggg aagaagttcc gttttgctcc caccacttca acaagctcca tctcaaggac
      541 gggaggtcca ttgtggttcc ctgccgccac caagatgaac tgattggccg ggcccgcgtc
      601 tctccagggg cgggatggag catccgggag actgcttgcc tagcaaaatc atatgcgcaa
      661 atgtggcagc tcctttattt ccacagaagg gacctccgac tgatggccaa tgccatttgt
      721 tcatct

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Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
13101310100%0.0100%KU820897.3
13101310100%0.0100%KU758877.1
13101310100%0.0100%KX247646.1
13101310100%0.0100%KX087101.2
13101310100%0.0100%KU937936.1
13101310100%0.0100%KX156776.1
13101310100%0.0100%KX156775.1
13101310100%0.0100%KX156774.1
13101310100%0.0100%KX087102.1
13101310100%0.0100%KU501215.1
13051305100%0.099%KX262887.1
13051305100%0.099%KX247632.1
13051305100%0.099%KX198135.1
13051305100%0.099%KX056898.1
13051305100%0.099%KU955590.1
13051305100%0.099%KU870645.1
13051305100%0.099%KU922960.1
13051305100%0.099%KU922923.1
13051305100%0.099%KU820898.1
13051305100%0.099%KU740184.2
13051305100%0.099%KU761564.1
13051305100%0.099%KU497555.1
13051305100%0.099%KU647676.1
13051305100%0.099%KU312312.1
13011301100%0.099%KX280026.1
13011301100%0.099%KX197192.1
13011301100%0.099%KX059014.1
13011301100%0.099%KX059013.1
13011301100%0.099%KX051563.1
13011301100%0.099%KU509998.3
13011301100%0.099%KU991811.1
13011301100%0.099%KU926310.1
13011301100%0.099%KU853013.1
13011301100%0.099%KU853012.1
13011301100%0.099%KU729217.2
13011301100%0.099%KU707826.1
13011301100%0.099%KU501217.1
13011301100%0.099%KU501216.1
13011301100%0.099%KU365780.1
13011301100%0.099%KU365779.1
13011301100%0.099%KU365778.1
13011301100%0.099%KU365777.1
13011301100%0.099%KU321639.1
13011301100%0.099%KM078936.1
13011301100%0.099%KJ873160.1
13011301100%0.099%KJ776791.1
12971297100%0.099%KM078961.1
12961296100%0.099%KU926309.1
12961296100%0.099%KU527068.1
12961296100%0.099%KM078930.1
12941294100%0.099%KM078971.1
12941294100%0.099%KM078970.1
12941294100%0.099%KM078933.1
12921292100%0.099%KU940228.1
12921292100%0.099%KU940224.1
12921292100%0.099%KU729218.1
12921292100%0.099%KM078929.1
12831283100%0.099%KX117076.1
12781278100%0.099%KX253996.1
12781278100%0.099%KX185891.1
12781278100%0.099%KU963796.1
12781278100%0.099%KU955589.1
12781278100%0.099%KU820899.2
12781278100%0.099%KU744693.1
12741274100%0.099%KU179098.1
12741274100%0.099%KF993678.1
12691269100%0.099%KU681081.3
12691269100%0.099%KM851039.1
12601260100%0.098%KU866423.1
12511251100%0.098%KU955593.1
12511251100%0.098%JN860885.1
12511251100%0.098%EU545988.1
12381238100%0.098%KU681082.3
12381238100%0.098%KM851038.1
1227122794%0.099%KJ873161.1
11301130100%0.094%HQ234499.1
1059105981%0.099%KU985087.1
1043104380%0.099%KU556802.1
95595599%0.089%KF268949.1
95195199%0.089%KU963573.1
95195199%0.089%KU955594.1
95195199%0.089%KU720415.1
95195199%0.089%LC002520.1
95195199%0.089%KF383118.1
95195199%0.089%HQ234498.1
95195199%0.089%AY632535.2
95195199%0.089%AF013415.1
94694699%0.089%KU963574.1
94694699%0.089%KF383121.1
94694699%0.089%KF383119.1
94694699%0.089%HQ234500.1
94294272%0.099%KU232300.1
94094072%0.099%KU232290.1
93793799%0.089%KX198134.1
93393399%0.089%KU955595.1
93393399%0.089%KU955592.1
93393399%0.089%KU955591.1
93393399%0.089%DQ859059.1
93193172%0.099%KU232297.1
92692671%0.099%KU232298.1

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LOCUS       KU724097                 653 bp    RNA     linear   VRL 11-JUN-2016
DEFINITION  Zika virus isolate 259250_2015_Panama NS5B gene, partial cds.
ACCESSION   KU724097
VERSION     KU724097.1  GI:998178888
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Arauz,D., De Urriola,L., Jones,J., Castillo,M., Martinez,A.,
            Murillo,E., Troncoso,L., Chen,M., Abrego,L., Armien,B.,
            Pascale,J.M., Sosa,N., Lopez-Verges,S. and Moreno,B.
  TITLE     Febrile or Exanthematous Illness Associated with Zika, Dengue, and
            Chikungunya Viruses, Panama
  JOURNAL   Emerging Infect. Dis. 22 (8) (2016) In press
   PUBMED   27139219
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Arauz,D. Sr., De Urriola,L., Castillo,M., Martinez,A.A.,
            Murillo,E., Pascale,J.M., Sosa,N., Lopez-Verges,S. and Moreno,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2016) Departament of Research in Virology and
            Biotechnology, Gorgas Institute For Health Studies Memorial
            Institute, Ave. Justo Arosemena 35th Street, Panama, Panama
            0816-02593, Panama
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: Sequencher v. 4.5
            Coverage              :: partial
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="259250_2015_Panama"
                     /isolation_source="serum"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Panama"
                     /collection_date="11-Dec-2015"
     CDS             <1..>653
                     /codon_start=2
                     /product="NS5B"
                     /protein_id="AMK26953.1"
                     /db_xref="GI:998178889"
                     /translation="ALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDII
                     SRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNG
                     WDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFC
                     SHHFNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLY"
ORIGIN      
        1 agctctaatc accaaccaaa tggagaaagg gcacagggcc ttggcattgg ccataatcaa
       61 gtacacatac caaaacaaag tggtaaaggt ccttagacca gctgaaaaag ggaaaacagt
      121 tatggacatt atttcgagac aagaccaaag ggggagcgga caagttgtca cttacgctct
      181 taacacattt accaacctag tggtgcaact cattcggaat atggaggctg aggaagttct
      241 agagatgcaa gacttgtggc tgctgcggag gtcagagaaa gtgaccaact ggttgcagag
      301 caacggatgg gataggctca aacgaatggc agtcagtgga gatgattgcg ttgtgaagcc
      361 aattgatgat aggtttgcac atgccctcag gttcttgaat gatatgggaa aagttaggaa
      421 ggacacacaa gagtggaaac cctcaactgg atgggacaac tgggaagaag ttccgttttg
      481 ctcccaccac ttcaacaagc tccatctcaa ggacgggagg tccattgtgg ttccctgccg
      541 ccaccaagat gaactgattg gccgggcccg cgtctctcca ggggcgggat ggagcatccg
      601 ggagactgct tgcctagcaa aatcatatgc gcaaatgtgg cagctccttt att

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
11781178100%0.0100%KU820897.3
11781178100%0.0100%KU758877.1
11781178100%0.0100%KX262887.1
11781178100%0.0100%KX247646.1
11781178100%0.0100%KX247632.1
11781178100%0.0100%KX087101.2
11781178100%0.0100%KU937936.1
11781178100%0.0100%KX156776.1
11781178100%0.0100%KX156775.1
11781178100%0.0100%KX156774.1
11781178100%0.0100%KX087102.1
11781178100%0.0100%KU870645.1
11781178100%0.0100%KU922960.1
11781178100%0.0100%KU922923.1
11781178100%0.0100%KU853013.1
11781178100%0.0100%KU853012.1
11781178100%0.0100%KU497555.1
11781178100%0.0100%KU647676.1
11781178100%0.0100%KU501215.1
11731173100%0.099%KX280026.1
11731173100%0.099%KX198135.1
11731173100%0.099%KX197192.1
11731173100%0.099%KX059014.1
11731173100%0.099%KX059013.1
11731173100%0.099%KX051563.1
11731173100%0.099%KX056898.1
11731173100%0.099%KU509998.3
11731173100%0.099%KU991811.1
11731173100%0.099%KU955590.1
11731173100%0.099%KU926310.1
11731173100%0.099%KU926309.1
11731173100%0.099%KU820898.1
11731173100%0.099%KU740184.2
11731173100%0.099%KU729217.2
11731173100%0.099%KU761564.1
11731173100%0.099%KU707826.1
11731173100%0.099%KU527068.1
11731173100%0.099%KU501217.1
11731173100%0.099%KU501216.1
11731173100%0.099%KU365780.1
11731173100%0.099%KU365779.1
11731173100%0.099%KU365777.1
11731173100%0.099%KU312312.1
11731173100%0.099%KU321639.1
11731173100%0.099%KM078936.1
11731173100%0.099%KJ873161.1
11731173100%0.099%KJ873160.1
11731173100%0.099%KJ776791.1
11711171100%0.099%KM078961.1
11691169100%0.099%KU940228.1
11691169100%0.099%KU940224.1
11691169100%0.099%KU365778.1
11691169100%0.099%KM078971.1
11691169100%0.099%KM078930.1
11661166100%0.099%KM078970.1
11661166100%0.099%KM078933.1
11641164100%0.099%KU729218.1
11641164100%0.099%KM078929.1
11551155100%0.099%KX117076.1
11511151100%0.099%KX253996.1
11511151100%0.099%KX185891.1
11511151100%0.099%KU963796.1
11511151100%0.099%KU955589.1
11511151100%0.099%KU820899.2
11511151100%0.099%KU744693.1
11461146100%0.099%KU681081.3
11461146100%0.099%KU179098.1
11461146100%0.099%KM851039.1
11461146100%0.099%KF993678.1
11331133100%0.098%KU866423.1
11241124100%0.098%KU955593.1
11241124100%0.098%JN860885.1
11241124100%0.098%EU545988.1
11101110100%0.098%KU681082.3
11101110100%0.098%KM851038.1
1018101886%0.0100%KU985087.1
10111011100%0.094%HQ234499.1
1002100284%0.0100%KU556802.1
89989976%0.099%KU232300.1
89789776%0.099%KU232290.1
88888876%0.099%KU232297.1
88388375%0.099%KU232298.1
88388375%0.099%KU232296.1
88388374%0.0100%KU232295.1
88388374%0.0100%KU232294.1
87987975%0.099%KU232293.1
87987974%0.0100%KU232288.1
87787774%0.099%KU232292.1
87587574%0.099%KU232291.1
87587574%0.0100%KU232289.1
87487474%0.0100%KU232299.1
854854100%0.089%KU963573.1
854854100%0.089%KU955594.1
854854100%0.089%KU720415.1
854854100%0.089%LC002520.1
854854100%0.089%KF383118.1
85485498%0.089%KF268949.1
854854100%0.089%HQ234498.1
854854100%0.089%AY632535.2
854854100%0.089%AF013415.1

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LOCUS       KU724098                 648 bp    RNA     linear   VRL 11-JUN-2016
DEFINITION  Zika virus isolate 259060_2015_Panama NS5B gene, partial cds.
ACCESSION   KU724098
VERSION     KU724098.1  GI:998178890
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Arauz,D., De Urriola,L., Jones,J., Castillo,M., Martinez,A.,
            Murillo,E., Troncoso,L., Chen,M., Abrego,L., Armien,B.,
            Pascale,J.M., Sosa,N., Lopez-Verges,S. and Moreno,B.
  TITLE     Febrile or Exanthematous Illness Associated with Zika, Dengue, and
            Chikungunya Viruses, Panama
  JOURNAL   Emerging Infect. Dis. 22 (8) (2016) In press
   PUBMED   27139219
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Arauz,D. Sr., De Urriola,L., Castillo,M., Martinez,A.A.,
            Murillo,E., Pascale,J.M., Sosa,N., Lopez-Verges,S. and Moreno,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2016) Departament of Research in Virology and
            Biotechnology, Gorgas Institute For Health Studies Memorial
            Institute, Ave. Justo Arosemena 35th Street, Panama, Panama
            0816-02593, Panama
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: Sequencher v. 4.5
            Coverage              :: partial
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="259060_2015_Panama"
                     /isolation_source="serum"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Panama"
                     /collection_date="29-Nov-2015"
     CDS             <1..>648
                     /codon_start=3
                     /product="NS5B"
                     /protein_id="AMK26954.1"
                     /db_xref="GI:998178891"
                     /translation="LALAIIKYXYQNKVVKVLRPAEKGKTVMDIISRQDQRGSGQVVT
                     YALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDRLKRMAVSGDD
                     CVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHHFNKLHLKDGR
                     SIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMAN"
ORIGIN      
        1 ccttggcatt ggccataatc aagtacrcat accaaaacaa agtggtaaag gtccttagac
       61 cagctgaaaa agggaaaaca gttatggaca ttatttcgag acaagaccaa agggggagcg
      121 gacaagttgt cacttacgct cttaacacat ttaccaacct agtggtgcaa ctcattcgga
      181 atatggaggc tgaggaagtt ctagagatgc aagacttgtg gctgctgcgg aggtcagaga
      241 aagtgaccaa ctggttgcag agcaacggat gggataggct caaacgaatg gcagtcagtg
      301 gagatgattg cgttgtgaag ccaattgatg ataggtttgc acatgccctc aggttcttga
      361 atgatatggg aaaagttagg aaggacacac aagagtggaa accctcaact ggatgggaca
      421 actgggaaga agttccgttt tgctcccacc acttcaacaa gctccatctc aaggacggga
      481 ggtccattgt ggttccctgc cgccaccaag atgaactgat tggccgggcc cgcgtctctc
      541 caggggcggg atggagcatc cgggagactg cttgcctagc aaaatcatat gcgcaaatgt
      601 ggcagctcct ttatttccac agaagggacc tccgactgat ggccaatg

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
11661166100%0.099%KU820897.3
11661166100%0.099%KU758877.1
11661166100%0.099%KX262887.1
11661166100%0.099%KX247646.1
11661166100%0.099%KX247632.1
11661166100%0.099%KX087101.2
11661166100%0.099%KU937936.1
11661166100%0.099%KX156776.1
11661166100%0.099%KX156775.1
11661166100%0.099%KX156774.1
11661166100%0.099%KX087102.1
11661166100%0.099%KU870645.1
11661166100%0.099%KU922960.1
11661166100%0.099%KU922923.1
11661166100%0.099%KU853013.1
11661166100%0.099%KU853012.1
11661166100%0.099%KU497555.1
11661166100%0.099%KU707826.1
11661166100%0.099%KU527068.1
11661166100%0.099%KU647676.1
11661166100%0.099%KU501215.1
11661166100%0.099%KU365780.1
11661166100%0.099%KU365779.1
11661166100%0.099%KU365777.1
11621162100%0.099%KX280026.1
11621162100%0.099%KX198135.1
11621162100%0.099%KX197192.1
11621162100%0.099%KX059014.1
11621162100%0.099%KX059013.1
11621162100%0.099%KX051563.1
11621162100%0.099%KX056898.1
11621162100%0.099%KU509998.3
11621162100%0.099%KU991811.1
11621162100%0.099%KU955590.1
11621162100%0.099%KU926310.1
11621162100%0.099%KU820898.1
11621162100%0.099%KU740184.2
11621162100%0.099%KU729217.2
11621162100%0.099%KU761564.1
11621162100%0.099%KU501217.1
11621162100%0.099%KU501216.1
11621162100%0.099%KU312312.1
11621162100%0.099%KU321639.1
11621162100%0.099%KM078936.1
11621162100%0.099%KJ873160.1
11621162100%0.099%KJ776791.1
11591159100%0.099%KM078961.1
11571157100%0.099%KU940228.1
11571157100%0.099%KU940224.1
11571157100%0.099%KU926309.1
11571157100%0.099%KU365778.1
11571157100%0.099%KM078971.1
11571157100%0.099%KM078930.1
11551155100%0.099%KM078970.1
11551155100%0.099%KM078933.1
11531153100%0.099%KU729218.1
11531153100%0.099%KM078929.1
11441144100%0.099%KX117076.1
11391139100%0.099%KX253996.1
11391139100%0.099%KX185891.1
11391139100%0.099%KU963796.1
11391139100%0.099%KU955589.1
11391139100%0.099%KU820899.2
11391139100%0.099%KU681081.3
11391139100%0.099%KU744693.1
11391139100%0.099%KM851039.1
11351135100%0.099%KU179098.1
11351135100%0.099%KF993678.1
11211121100%0.098%KU866423.1
1113111395%0.099%KJ873161.1
11121112100%0.098%KU955593.1
11121112100%0.098%JN860885.1
11121112100%0.098%EU545988.1
10991099100%0.098%KU681082.3
10991099100%0.098%KM851038.1
1000100099%0.094%HQ234499.1
94694681%0.099%KU985087.1
93093079%0.099%KU556802.1
86586599%0.090%KF268949.1
85985999%0.089%KF383118.1
85485499%0.089%KU963573.1
85485499%0.089%KU955594.1
85485499%0.089%KU720415.1
85485499%0.089%LC002520.1
85485499%0.089%KF383121.1
85485499%0.089%KF383119.1
85485499%0.089%HQ234498.1
85485499%0.089%DQ859059.1
85485499%0.089%AY632535.2
85485499%0.089%AF013415.1
85085099%0.089%KU963574.1
85085099%0.089%HQ234500.1
84584599%0.089%KX198134.1
84184199%0.089%KU955595.1
84184199%0.089%KU955592.1
84184199%0.089%KU955591.1
83883871%0.0100%KU867812.1
83283299%0.089%KF383116.1
82982971%0.099%KU232300.1
82782771%0.099%KU232290.1

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LOCUS       KU724099                 612 bp    RNA     linear   VRL 11-JUN-2016
DEFINITION  Zika virus isolate 259032_2015_Panama NS5B gene, partial cds.
ACCESSION   KU724099
VERSION     KU724099.1  GI:998178892
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Arauz,D., De Urriola,L., Jones,J., Castillo,M., Martinez,A.,
            Murillo,E., Troncoso,L., Chen,M., Abrego,L., Armien,B.,
            Pascale,J.M., Sosa,N., Lopez-Verges,S. and Moreno,B.
  TITLE     Febrile or Exanthematous Illness Associated with Zika, Dengue, and
            Chikungunya Viruses, Panama
  JOURNAL   Emerging Infect. Dis. 22 (8) (2016) In press
   PUBMED   27139219
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Arauz,D. Sr., De Urriola,L., Castillo,M., Martinez,A.A.,
            Murillo,E., Pascale,J.M., Sosa,N., Lopez-Verges,S. and Moreno,B.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2016) Departament of Research in Virology and
            Biotechnology, Gorgas Institute For Health Studies Memorial
            Institute, Ave. Justo Arosemena 35th Street, Panama, Panama
            0816-02593, Panama
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: Sequencher v. 4.5
            Coverage              :: partial
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="259032_2015_Panama"
                     /isolation_source="serum"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Panama"
                     /collection_date="29-Nov-2015"
     CDS             <1..>612
                     /codon_start=1
                     /product="NS5B"
                     /protein_id="AMK26955.1"
                     /db_xref="GI:998178893"
                     /translation="KVLRPAEKGKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIR
                     NMEAEEVLEMQDLWLLRRSEKVTNWLQXNGWDRLKRMAVSGDDCVVKPIDDRFAHALR
                     FLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHHFNKLHLKDGRSIVVPCRHQDELIGR
                     ARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICS"
ORIGIN      
        1 aaggtcctta gaccagctga aaaagggaaa acagttatgg acattatttc gagacaagac
       61 caaaggggga gcggacaagt tgtcacttac gctcttaaca catttaccaa cctagtggtg
      121 caactcattc ggaatatgga ggctgaggaa gttctagaga tgcaagactt gtggctgctg
      181 cggaggtcag agaaagtgac caactggttg cagarcaacg gatgggatag gctcaaacga
      241 atggcagtca gtggagatga ttgcgttgtg aagccaattg atgataggtt tgcacatgcc
      301 ctcaggttct tgaatgatat gggaaaagtt aggaaggaca cacaagagtg gaaaccctca
      361 actggatggg acaactggga agaagttccg ttttgctccc accacttcaa caagctccat
      421 ctcaaggacg ggaggtccat tgtggttccc tgccgccacc aagatgaact gattggccgg
      481 gcccgcgtct ctccaggggc gggatggagc atccgggaga ctgcttgcct agcaaaatca
      541 tatgcgcaaa tgtggcagct cctttatttc cacagaaggg acctccgact gatggccaat
      601 gccatttgtt ca

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
11011101100%0.099%KU758877.1
11011101100%0.099%KX262887.1
11011101100%0.099%KX247646.1
11011101100%0.099%KX247632.1
11011101100%0.099%KU820897.2
11011101100%0.099%KX087101.2
11011101100%0.099%KU937936.1
11011101100%0.099%KX156776.1
11011101100%0.099%KX156775.1
11011101100%0.099%KX156774.1
11011101100%0.099%KX087102.1
11011101100%0.099%KU870645.1
11011101100%0.099%KU922960.1
11011101100%0.099%KU922923.1
11011101100%0.099%KU853013.1
11011101100%0.099%KU853012.1
11011101100%0.099%KU729217.2
11011101100%0.099%KU497555.1
11011101100%0.099%KU707826.1
11011101100%0.099%KU527068.1
11011101100%0.099%KU647676.1
11011101100%0.099%KU501215.1
11011101100%0.099%KU365780.1
11011101100%0.099%KU365779.1
11011101100%0.099%KU365777.1
10971097100%0.099%KX280026.1
10971097100%0.099%KX198135.1
10971097100%0.099%KX197192.1
10971097100%0.099%KX059014.1
10971097100%0.099%KX059013.1
10971097100%0.099%KX051563.1
10971097100%0.099%KX056898.1
10971097100%0.099%KU509998.3
10971097100%0.099%KU991811.1
10971097100%0.099%KU955590.1
10971097100%0.099%KU926310.1
10971097100%0.099%KU820898.1
10971097100%0.099%KU740184.2
10971097100%0.099%KU761564.1
10971097100%0.099%KU501217.1
10971097100%0.099%KU501216.1
10971097100%0.099%KU312312.1
10971097100%0.099%KU321639.1
10971097100%0.099%KM078961.1
10971097100%0.099%KM078936.1
10971097100%0.099%KM078933.1
10971097100%0.099%KJ873160.1
10971097100%0.099%KJ776791.1
10921092100%0.099%KU926309.1
10921092100%0.099%KU729218.1
10921092100%0.099%KU365778.1
10921092100%0.099%KM078971.1
10921092100%0.099%KM078930.1
10901090100%0.099%KM078970.1
10881088100%0.099%KU940228.1
10881088100%0.099%KU940224.1
10881088100%0.099%KM078929.1
10791079100%0.099%KX117076.1
10741074100%0.099%KX253996.1
10741074100%0.099%KX185891.1
10741074100%0.099%KU963796.1
10741074100%0.099%KU955589.1
10741074100%0.099%KU820899.2
10741074100%0.099%KU681081.3
10741074100%0.099%KU744693.1
10741074100%0.099%KU179098.1
10741074100%0.099%KM851039.1
10701070100%0.099%KF993678.1
10561056100%0.098%KU866423.1
10471047100%0.098%KU955593.1
10471047100%0.098%JN860885.1
10471047100%0.098%EU545988.1
10341034100%0.097%KU681082.3
10341034100%0.097%KM851038.1
1029102993%0.099%KJ873161.1
939939100%0.094%HQ234499.1
86186178%0.099%KU985087.1
85485477%0.099%KU867812.1
84584576%0.099%KU556802.1