niman Posted June 14, 2016 Report Share Posted June 14, 2016 Bernhard Nocht Institute for Tropical Medicine release partial 2016 sequence from a traveler from Puerto Rico and his sexual contact in Germany. Link to comment Share on other sites More sharing options...
niman Posted June 14, 2016 Author Report Share Posted June 14, 2016 LOCUS KX253995 377 bp RNA linear VRL 13-JUN-2016 DEFINITION Zika virus isolate ZIKV/Homo sapiens/GER/GER-BNI-P1/2016 polyprotein gene, partial cds. ACCESSION KX253995 VERSION KX253995.1 GI:1029979491 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 377) AUTHORS Frank,C., Cadar,D., Schlaphof,A., Neddersen,N., Gunther,S., Schimdt-Chanasit,J. and Tappe,D. TITLE Sexual transmission of Zika virus in Germany, April 2016 JOURNAL Euro Surveill. 21 (23), 13-16 (2016) REFERENCE 2 (bases 1 to 377) AUTHORS Cadar,D., Tappe,D. and Schimdt-Chanasit,J. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Virology, Bernhard Nocht Institute for Tropical Medicine, Bernhard-Nocht-Str. 74, Hamburg 20359, Germany COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..377 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV/Homo sapiens/GER/GER-BNI-P1/2016" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="Germany" /collection_date="21-Apr-2016" /note="sexual transmission" CDS <1..>377 /note="NS5" /codon_start=1 /product="polyprotein" /protein_id="ANF28867.1" /db_xref="GI:1029979492" /translation="YQNKVVKVLRPAEKGKTVMDIISRQDQRGSGQVVTYALNTFTNL VVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDRLKRMAVSGDDCVVKPIDDR FAHALRFLNDMGKVRKDTQEWKPS" ORIGIN 1 taccaaaaca aagtggtaaa ggtccttaga ccagctgaaa aagggaaaac agttatggac 61 attatttcga gacaagacca aagggggagc ggacaagttg tcacttacgc tcttaacaca 121 tttaccaacc tagtggtgca actcattcgg aatatggagg ctgaggaagt tctagagatg 181 caagacttgt ggctgctgcg gaggtcagag aaagtgacca actggttgca gagcaacgga 241 tgggataggc tcaaacgaat ggcagtcagt ggagatgatt gcgttgtgaa gccaattgat 301 gataggtttg cacatgccct caggttcttg aatgatatgg gaaaagttag gaaggacaca 361 caagagtgga aaccctc Link to comment Share on other sites More sharing options...
niman Posted June 14, 2016 Author Report Share Posted June 14, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU724098.1|Zika virus isolate 259060_2015_Panama NS5B gene, partial cds681681100%0.0100%KU724098.1Select seq gb|KU724097.1|Zika virus isolate 259250_2015_Panama NS5B gene, partial cds681681100%0.0100%KU724097.1Select seq gb|KU724096.1|Zika virus isolate 259249_2015_Panama NS5B gene, partial cds681681100%0.0100%KU724096.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds681681100%0.0100%KU820897.3Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds681681100%0.0100%KU758877.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome681681100%0.0100%KX262887.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome681681100%0.0100%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds681681100%0.0100%KX247632.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome681681100%0.0100%KX087101.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome681681100%0.0100%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds681681100%0.0100%KU937936.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome681681100%0.0100%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome681681100%0.0100%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome681681100%0.0100%KX156774.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome681681100%0.0100%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds681681100%0.0100%KX056898.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds681681100%0.0100%KU991811.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds681681100%0.0100%KU985087.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds681681100%0.0100%KU955590.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome681681100%0.0100%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome681681100%0.0100%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome681681100%0.0100%KU922923.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds681681100%0.0100%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds681681100%0.0100%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome681681100%0.0100%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome681681100%0.0100%KU853012.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds681681100%0.0100%KU729217.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds681681100%0.0100%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome681681100%0.0100%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome681681100%0.0100%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome681681100%0.0100%KU527068.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232299.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232295.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232294.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232293.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232291.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232290.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232289.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232288.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds681681100%0.0100%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds681681100%0.0100%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome681681100%0.0100%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds681681100%0.0100%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds681681100%0.0100%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds681681100%0.0100%KU365777.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds677677100%0.099%KU232300.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome675675100%0.099%KX280026.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome675675100%0.099%KX197192.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds675675100%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds675675100%0.099%KX059013.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome675675100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome675675100%0.099%KU509998.3Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome675675100%0.099%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome675675100%0.099%KU926309.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds675675100%0.099%KU232297.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds675675100%0.099%KU232292.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds675675100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds675675100%0.099%KU501216.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds675675100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds675675100%0.099%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome675675100%0.099%KU321639.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds675675100%0.099%KM078961.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds675675100%0.099%KM078936.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds675675100%0.099%KM078933.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds675675100%0.099%KJ873161.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds675675100%0.099%KJ873160.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds675675100%0.099%KJ776791.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome672672100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome672672100%0.099%KU940224.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds672672100%0.099%KU729218.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome672672100%0.099%KU681081.3Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds672672100%0.099%KM851039.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds672672100%0.099%KM078971.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds672672100%0.099%KM078930.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds668668100%0.099%KM078970.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds666666100%0.099%KM078929.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome663663100%0.099%KX117076.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome663663100%0.099%KU744693.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds663663100%0.099%KU179098.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome657657100%0.099%KX253996.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds657657100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds657657100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds657657100%0.099%KU955589.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds657657100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome657657100%0.099%KU820899.2Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds657657100%0.099%KF993678.1Select seq gb|KU724099.1|Zika virus isolate 259032_2015_Panama NS5B gene, partial cds64564595%0.099%KU724099.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome645645100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds645645100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds639639100%1e-17998%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome636636100%1e-17897%KU681082.3Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds636636100%1e-17897%KM851038.1Select seq gb|KU724100.1|Zika virus isolate 259043_2015_Panama NS5B gene, partial cds58058085%9e-16299%KU724100.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds576576100%1e-16094%HQ234499.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome53153179%4e-14799%KX101061.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds531531100%4e-14791%KF268949.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds513513100%1e-14190%KF383118.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds513513100%1e-14190%KF383103.1 Link to comment Share on other sites More sharing options...
niman Posted June 14, 2016 Author Report Share Posted June 14, 2016 Sequence Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
niman Posted June 14, 2016 Author Report Share Posted June 14, 2016 LOCUS KX253994 447 bp RNA linear VRL 13-JUN-2016 DEFINITION Zika virus isolate ZIKV/Homo sapiens/PRI/PRI-BNI-P2/2016 polyprotein gene, partial cds. ACCESSION KX253994 VERSION KX253994.1 GI:1029979489 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 447) AUTHORS Frank,C., Cadar,D., Schlaphof,A., Neddersen,N., Gunther,S., Schimdt-Chanasit,J. and Tappe,D. TITLE Sexual transmission of Zika virus in Germany, April 2016 JOURNAL Euro Surveill. 21 (23), 13-16 (2016) REFERENCE 2 (bases 1 to 447) AUTHORS Cadar,D., Tappe,D. and Schimdt-Chanasit,J. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Virology, Bernhard Nocht Institute for Tropical Medicine, Bernhard-Nocht-Str. 74, Hamburg 20359, Germany COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..447 /organism="Zika virus" /mol_type="genomic RNA" /isolate="ZIKV/Homo sapiens/PRI/PRI-BNI-P2/2016" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="Germany" /collection_date="21-Apr-2016" /note="imported from Puerto Rico; sexual trasmission" CDS <1..>447 /note="NS5" /codon_start=1 /product="polyprotein" /protein_id="ANF28866.1" /db_xref="GI:1029979490" /translation="NEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMD IISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQS NGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKP" ORIGIN 1 aatgaagctc taatcaccaa ccaaatggag aaagggcaca gggccttggc attggccata 61 atcaagtaca cataccaaaa caaagtggta aaggtcctta gaccagctga aaaagggaaa 121 acagttatgg acattatttc gagacaagac caaaggggga gcggacaagt tgtcacttac 181 gctcttaaca catttaccaa cctagtggtg caactcattc ggaatatgga ggctgaggaa 241 gttctagaga tgcaagactt gtggctgctg cggaggtcag agaaagtgac caactggttg 301 cagagcaacg gatgggatag gctcaaacga atggcagtca gtggagatga ttgcgttgtg 361 aagccaattg atgataggtt tgcacatgcc ctcaggttct tgaatgatat gggaaaagtt 421 aggaaggaca cacaagagtg gaaaccc Link to comment Share on other sites More sharing options...
niman Posted June 14, 2016 Author Report Share Posted June 14, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU724096.1|Zika virus isolate 259249_2015_Panama NS5B gene, partial cds807807100%0.0100%KU724096.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds807807100%0.0100%KU820897.3Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds807807100%0.0100%KU758877.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome807807100%0.0100%KX262887.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome807807100%0.0100%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds807807100%0.0100%KX247632.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome807807100%0.0100%KX087101.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome807807100%0.0100%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds807807100%0.0100%KU937936.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome807807100%0.0100%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome807807100%0.0100%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome807807100%0.0100%KX156774.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome807807100%0.0100%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds807807100%0.0100%KX056898.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds807807100%0.0100%KU991811.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds807807100%0.0100%KU985087.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds807807100%0.0100%KU955590.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome807807100%0.0100%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome807807100%0.0100%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome807807100%0.0100%KU922923.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds807807100%0.0100%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds807807100%0.0100%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome807807100%0.0100%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome807807100%0.0100%KU853012.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds807807100%0.0100%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome807807100%0.0100%KU497555.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232299.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232295.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232294.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232290.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232289.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232288.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds807807100%0.0100%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds807807100%0.0100%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome807807100%0.0100%KU501215.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds803803100%0.099%KU232300.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome801801100%0.099%KX280026.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome801801100%0.099%KX197192.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds801801100%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds801801100%0.099%KX059013.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome801801100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome801801100%0.099%KU509998.3Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome801801100%0.099%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome801801100%0.099%KU926309.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds801801100%0.099%KU729217.2Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome801801100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome801801100%0.099%KU527068.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds801801100%0.099%KU232297.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds801801100%0.099%KU232293.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds801801100%0.099%KU232292.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds801801100%0.099%KU232291.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds801801100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds801801100%0.099%KU501216.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds801801100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds801801100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds801801100%0.099%KU365778.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds801801100%0.099%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds801801100%0.099%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome801801100%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds801801100%0.099%KM078936.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds801801100%0.099%KJ873161.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds801801100%0.099%KJ873160.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds801801100%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds800800100%0.099%KM078961.1Select seq gb|KU724097.1|Zika virus isolate 259250_2015_Panama NS5B gene, partial cds79879898%0.0100%KU724097.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome798798100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome798798100%0.099%KU940224.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds798798100%0.099%KM078971.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds798798100%0.099%KM078930.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds794794100%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds794794100%0.099%KM078933.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds792792100%0.099%KU729218.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds792792100%0.099%KM078929.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome789789100%0.099%KX117076.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome789789100%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome789789100%0.099%KU744693.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds789789100%0.099%KM851039.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome783783100%0.099%KX253996.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds783783100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds783783100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds783783100%0.099%KU955589.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds783783100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome783783100%0.099%KU820899.2Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds783783100%0.099%KU179098.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds783783100%0.099%KF993678.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome771771100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds771771100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds765765100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome762762100%0.098%KU681082.3Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds762762100%0.098%KM851038.1Select seq gb|KU724098.1|Zika virus isolate 259060_2015_Panama NS5B gene, partial cds72672690%0.099%KU724098.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds693693100%0.094%HQ234499.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome66166182%0.099%KX101061.1Select seq gb|KU724099.1|Zika virus isolate 259032_2015_Panama NS5B gene, partial cds64164179%4e-18099%KU724099.1 Link to comment Share on other sites More sharing options...
niman Posted June 14, 2016 Author Report Share Posted June 14, 2016 Sequence Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
niman Posted June 15, 2016 Author Report Share Posted June 15, 2016 1.Zika virus isolate ZIKV/Homo sapiens/PRI/PRI-BNI-P2/2016 polyprotein gene, partial cds447 bp linear RNAAccession: KX253994.1 GI: 1029979489GenBankFASTAGraphicsSelect item 10299794912.Zika virus isolate ZIKV/Homo sapiens/GER/GER-BNI-P1/2016 polyprotein gene, partial cds377 bp linear RNAAccession: KX253995.1 GI: 1029979491GenBankFASTAGraphics Link to comment Share on other sites More sharing options...
niman Posted June 17, 2016 Author Report Share Posted June 17, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX253994.1|Zika virus strain ZIKV/Homo sapiens/GER/GER-BNI-P2/2016 polyprotein gene, partial cds807807100%0.0100%KX253994.1Select seq gb|KU724096.1|Zika virus isolate 259249_2015_Panama NS5B gene, partial cds807807100%0.0100%KU724096.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds807807100%0.0100%KU820897.3Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds807807100%0.0100%KU758877.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome807807100%0.0100%KX262887.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome807807100%0.0100%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds807807100%0.0100%KX247632.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome807807100%0.0100%KX087101.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome807807100%0.0100%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds807807100%0.0100%KU937936.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome807807100%0.0100%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome807807100%0.0100%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome807807100%0.0100%KX156774.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome807807100%0.0100%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds807807100%0.0100%KX056898.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds807807100%0.0100%KU991811.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds807807100%0.0100%KU985087.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds807807100%0.0100%KU955590.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome807807100%0.0100%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome807807100%0.0100%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome807807100%0.0100%KU922923.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds807807100%0.0100%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds807807100%0.0100%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome807807100%0.0100%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome807807100%0.0100%KU853012.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds807807100%0.0100%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome807807100%0.0100%KU497555.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232299.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232295.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232294.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232290.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232289.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds807807100%0.0100%KU232288.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds807807100%0.0100%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds807807100%0.0100%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome807807100%0.0100%KU501215.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds803803100%0.099%KU232300.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome801801100%0.099%KX280026.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome801801100%0.099%KX197192.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds801801100%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds801801100%0.099%KX059013.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome801801100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome801801100%0.099%KU509998.3Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome801801100%0.099%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome801801100%0.099%KU926309.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds801801100%0.099%KU729217.2Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome801801100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome801801100%0.099%KU527068.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds801801100%0.099%KU232297.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds801801100%0.099%KU232293.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds801801100%0.099%KU232292.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds801801100%0.099%KU232291.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds801801100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds801801100%0.099%KU501216.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds801801100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds801801100%0.099%KU365779.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds801801100%0.099%KU365778.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds801801100%0.099%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds801801100%0.099%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome801801100%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds801801100%0.099%KM078936.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds801801100%0.099%KJ873161.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds801801100%0.099%KJ873160.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds801801100%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds800800100%0.099%KM078961.1Select seq gb|KU724097.1|Zika virus isolate 259250_2015_Panama NS5B gene, partial cds79879898%0.0100%KU724097.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome798798100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome798798100%0.099%KU940224.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds798798100%0.099%KM078971.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds798798100%0.099%KM078930.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds794794100%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds794794100%0.099%KM078933.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds792792100%0.099%KU729218.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds792792100%0.099%KM078929.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome789789100%0.099%KX117076.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome789789100%0.099%KU681081.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome789789100%0.099%KU744693.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds789789100%0.099%KM851039.1Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds783783100%0.099%KU866423.2Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome783783100%0.099%KX253996.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds783783100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds783783100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds783783100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome783783100%0.099%KU820899.2Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds783783100%0.099%KU179098.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds783783100%0.099%KF993678.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome771771100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds771771100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds765765100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome762762100%0.098%KU681082.3Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds762762100%0.098%KM851038.1Select seq gb|KU724098.1|Zika virus isolate 259060_2015_Panama NS5B gene, partial cds72672690%0.099%KU724098.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds693693100%0.094%HQ234499.1Select seq gb|KX253995.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRI-BNI-P1/2016 polyprotein gene, partial cds67767783%0.0100%KX253995.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome66166182%0.099%KX101061.1Select seq gb|KU724099.1|Zika virus isolate 259032_2015_Panama NS5B gene, partial cds64164179%4e-18099%KU724099.1 Link to comment Share on other sites More sharing options...
niman Posted June 18, 2016 Author Report Share Posted June 18, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX253995.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRI-BNI-P1/2016 polyprotein gene, partial cds681681100%0.0100%KX253995.1Select seq gb|KU724098.1|Zika virus isolate 259060_2015_Panama NS5B gene, partial cds681681100%0.0100%KU724098.1Select seq gb|KU724097.1|Zika virus isolate 259250_2015_Panama NS5B gene, partial cds681681100%0.0100%KU724097.1Select seq gb|KU724096.1|Zika virus isolate 259249_2015_Panama NS5B gene, partial cds681681100%0.0100%KU724096.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds681681100%0.0100%KU820897.3Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds681681100%0.0100%KU758877.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome681681100%0.0100%KX262887.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome681681100%0.0100%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds681681100%0.0100%KX247632.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome681681100%0.0100%KX087101.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome681681100%0.0100%KX198135.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds681681100%0.0100%KU937936.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome681681100%0.0100%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome681681100%0.0100%KX156775.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome681681100%0.0100%KX156774.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome681681100%0.0100%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds681681100%0.0100%KX056898.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds681681100%0.0100%KU991811.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds681681100%0.0100%KU985087.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds681681100%0.0100%KU955590.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome681681100%0.0100%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome681681100%0.0100%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome681681100%0.0100%KU922923.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds681681100%0.0100%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds681681100%0.0100%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome681681100%0.0100%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome681681100%0.0100%KU853012.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds681681100%0.0100%KU729217.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds681681100%0.0100%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome681681100%0.0100%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome681681100%0.0100%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome681681100%0.0100%KU527068.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232299.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232295.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232294.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232293.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232291.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232290.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232289.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds681681100%0.0100%KU232288.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds681681100%0.0100%KU556802.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds681681100%0.0100%KU647676.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome681681100%0.0100%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds681681100%0.0100%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds681681100%0.0100%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds681681100%0.0100%KU365777.1Select seq gb|KX253994.1|Zika virus strain ZIKV/Homo sapiens/GER/GER-BNI-P2/2016 polyprotein gene, partial cds67767799%0.0100%KX253994.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds677677100%0.099%KU232300.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome675675100%0.099%KX280026.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome675675100%0.099%KX197192.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds675675100%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds675675100%0.099%KX059013.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome675675100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome675675100%0.099%KU509998.3Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome675675100%0.099%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome675675100%0.099%KU926309.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds675675100%0.099%KU232297.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds675675100%0.099%KU232292.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds675675100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds675675100%0.099%KU501216.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds675675100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds675675100%0.099%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome675675100%0.099%KU321639.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds675675100%0.099%KM078961.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds675675100%0.099%KM078936.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds675675100%0.099%KM078933.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds675675100%0.099%KJ873161.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds675675100%0.099%KJ873160.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds675675100%0.099%KJ776791.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome672672100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome672672100%0.099%KU940224.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds672672100%0.099%KU729218.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome672672100%0.099%KU681081.3Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds672672100%0.099%KM851039.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds672672100%0.099%KM078971.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds672672100%0.099%KM078930.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds668668100%0.099%KM078970.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds666666100%0.099%KM078929.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome663663100%0.099%KX117076.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome663663100%0.099%KU744693.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds663663100%0.099%KU179098.1Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds657657100%0.099%KU866423.2Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome657657100%0.099%KX253996.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds657657100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds657657100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds657657100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome657657100%0.099%KU820899.2Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds657657100%0.099%KF993678.1Select seq gb|KU724099.1|Zika virus isolate 259032_2015_Panama NS5B gene, partial cds64564595%0.099%KU724099.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome645645100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds645645100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds639639100%1e-17998%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome636636100%1e-17897%KU681082.3Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds636636100%1e-17897%KM851038.1Select seq gb|KU724100.1|Zika virus isolate 259043_2015_Panama NS5B gene, partial cds58058085%9e-16299%KU724100.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds576576100%1e-16094%HQ234499.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome53153179%4e-14799%KX101061.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds531531100%4e-14791%KF268949.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds513513100%1e-14190%KF383118.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds513513100%1e-14190%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds513513100%1e-14190%KF383086.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds509509100%1e-14090%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds509509100%1e-14090%KF383119.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds50650698%2e-13990%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds50650698%2e-13990%KF268948.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds504504100%6e-13990%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome504504100%6e-13990%KU955594.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds504504100%6e-13990%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID504504100%6e-13990%LC002520.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds504504100%6e-13990%HQ234498.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome504504100%6e-13990%AY632535.2Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds504504100%6e-13990%AF013415.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds495495100%3e-13689%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds495495100%3e-13689%HQ234500.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds495495100%3e-13689%DQ859059.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds491491100%4e-13589%KF383106.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds491491100%4e-13589%KF383104.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds491491100%4e-13589%KF383088.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome486486100%2e-13389%KX198134.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome486486100%2e-13389%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome486486100%2e-13389%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome486486100%2e-13389%KU955591.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds486486100%2e-13389%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds486486100%2e-13389%KF383107.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds486486100%2e-13389%KF383087.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds486486100%2e-13389%KF383085.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds482482100%2e-13288%KF383116.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds475475100%3e-13088%KF383115.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds473473100%1e-12988%HQ234501.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds468468100%4e-12888%KF383113.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds468468100%4e-12888%KF383098.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds468468100%4e-12888%KF383097.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds468468100%4e-12888%KF383089.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds464464100%5e-12787%KF383117.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds464464100%5e-12787%KF383101.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds464464100%5e-12787%KF383099.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds455455100%3e-12487%KF383084.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds40140158%5e-108100%KU867812.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence369369100%3e-9882%KF383120.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds347347100%1e-9180%KF383093.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds347347100%1e-9180%KF383091.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds342342100%4e-9080%KF383095.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds342342100%4e-9080%KF383092.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome331331100%8e-8775%KX101060.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome21721731%1e-52100%KX101066.1Select seq gb|FJ898456.1|Dengue virus 3 isolate DENV-3/WS/BID-V2973/1995, complete genome15215295%4e-3370%FJ898456.1Select seq gb|JQ920478.1|Dengue virus 3 isolate PF95/190795-20064 polyprotein gene, complete cds14714795%2e-3170%JQ920478.1Select seq gb|AY656170.1|Dengue virus type 3 vector p3(delta30), complete sequence14714795%2e-3170%AY656170.1Select seq gb|AY656169.1|Dengue virus type 3 vector p3, complete sequence14714795%2e-3170%AY656169.1Select seq gb|AY648961.1|Dengue virus type 3 strain Sleman/78, complete genome14714795%2e-3170%AY648961.1Select seq gb|KT831765.1|Dengue virus 1 isolate BO15/14, partial genome145145100%6e-3170%KT831765.1Select seq gb|JF262780.1|Dengue virus 4 isolate P73-1120, complete genome145145100%6e-3170%JF262780.1Select seq gb|JF262779.1|Dengue virus 4 isolate P75-514, complete genome145145100%6e-3170%JF262779.1Select seq gb|EF457906.1|Dengue virus type 4 isolate P75-215, complete genome145145100%6e-3170%EF457906.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome14321731%2e-30100%KX101064.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome14321731%2e-30100%KU940227.1 Link to comment Share on other sites More sharing options...
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