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2016 Yellow Fever Sequences In China ex-Angola

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Beijing CDC has released four full 2016 Yellow Fever Virus (YFV) sequences from infected travelers returning from Angola.

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LOCUS       KX010994               10823 bp    RNA     linear   VRL 08-MAY-2016
DEFINITION  Yellow fever virus isolate CIC1, complete genome.
ACCESSION   KX010994
VERSION     KX010994.1  GI:1024994369
KEYWORDS    .
SOURCE      Yellow fever virus (YFV)
  ORGANISM  Yellow fever virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus; Yellow fever virus group.
REFERENCE   1  (bases 1 to 10823)
  AUTHORS   Pan,Y., Cui,S., Huo,D., Lyu,Y., Li,J., Chen,L., Wang,Q., Tian,L.,
            Dou,X., Li,X., Sun,Y., Lu,G., Du,Y., Li,S. and Li,X.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2016) Department of Infectious Disease and
            Endemic Disease Control, Beijing Center for Disease Prevetion and
            Control, 16 Hepingli Middle Street, Dongcheng District, Beijing
            100013, China
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: samtools v. v1.2
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10823
                     /organism="Yellow fever virus"
                     /mol_type="genomic RNA"
                     /isolate="CIC1"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:11089"
                     /country="China"
                     /collection_date="11-Mar-2016"
                     /note="clinical-imported case 1"
     CDS             121..10359
                     /note="gp1"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="ANC33489.1"
                     /db_xref="GI:1024994370"
                     /translation="MSGRKAQGRTLGVNMVRRGVRSLSNKIKQKTKQIGNRPGPSRGV
                     QGFIFFFLFNILTGKKLTAHLKKLWRMLDPRQGLAVLRKVKRVVASLMRGLSSRKRRS
                     NEMAMFPLLLLGLLALSGGVTLVRKNRWLLLNVTAEDLGKTFSVGTGNCTTNILEAKY
                     WCPDSMEYNCPNLSPREEPDDIDCWCYGVENVRVAYGRCDAVGRSKRSRRAIDLPTHE
                     NHGLKTRQEKWMTGRMGERQLQKIERWLVRNPFFAVTALAIAYLVGNNTTQRVVIALL
                     VLAVGPAYSAHCIGITDRDFIEGVHGGTWVSATLEQDKCVTVMAPDKPSLDISLQTVA
                     IDGPAEARKVCYSAVLTHVKINDKCPSTGEAHLAEENDGDNACKRTYSDRGWGNGCGL
                     FGKGSIVACAKFTCAKSMSLFEVDQTKIQYVIRAQLHVGAKQENWNTDIKTLKFDALS
                     GSQEAEFTGYGKATLECQVQTAVDFGNSYIAEMEKDSWIVDRQWAQDLTLPWQSGSGG
                     IWREMHHLVEFEPPHAATIRVLALGNQEGSLKTALTGAMRVTKDENDNNLYKLHGGHV
                     SCRVKLSALTLKGTSYKMCTDKMSFVKNPTDTGHGTVVMQVKVPKGAPCKIPVIVADD
                     LTAAVNKGILVTVNPIASTNDDEVLIEVNPPFGDSYIIVGTGDSRLTYQWHKEGSSIG
                     KLFTQTMKGAERLAVMGDAAWDFSSAGGFFTSVGKGIHTVFGSAFQGLFGGLSWITKV
                     IMGAVLIWVGINTRNMTMSMSMILVGVIMMFLSLGVGADQGCAVNFGKRELKCGDGIF
                     VFRDSDDWLTKYSYYPEDPVKLASIIKASHEEGKCGLNSVDSLEHEMWRSRADEINAI
                     FEENEVDISVVVQDPKNIYQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIID
                     GKSRKECPFSNRVWNSFQIEEFGMGVFTTRVFMDATFDYSVDCDGAILGAAVNGKKSA
                     HGSPTFWMGSHEVNGTWMIHTLETLDYKECEWPLTHTIGTSVEESDMFMPRSIGGPVS
                     SHNRIPGYKVQTNGPWMQVPLEVKREVCPGTSVVVDSNCDGRGKSTRSTTDSGKIIPE
                     WCCRSCTMPPVSFHGSDGCWYPMEIRPMKTSDSHLVRSWVTAGEVHAVPFGLVSMMIA
                     MEVVLRRRQGPKQMLVGGVVLLGAMLVGQVTVLDLVKFVVAVGLHFHEINNGGDAMYM
                     ALIASFSIRPGLLMGFGLRTLWSPRERLVMAFGAAMVEIALGGMMGGLWQYLNAVSLC
                     VLTINAISSRKASNMILPLMALMTPMTMHEVRMATMLFCTVVIIGVLHQNSKDTSMQK
                     TIPIVALTLTSYMGLTQPFLGLCAYMSTQVFGRRSIPVNEALAAAGLVGVLAGLAFQD
                     MENFLGPIAVGGILMMLVSVAGRVDGLELKKLGEISWEEEAEISGSSSRYDVALSEQG
                     EFKLLSEDKVPWDQIVMTSLALVGAAIHPFALLLVLGGWILHIKGARRSGDVLWDIPT
                     PKVIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLLRNGKKLV
                     PSWASVKEDLVAYGGSWKLDGRWDGEEEVQLIAAVPGKSVVNVQTKPSLFRVKNGGEI
                     GAVALDYPSGTSGSPIVNRNGEVVGLYGNGILVGDNSFVSAISQTELKEESKEELQEI
                     PTMLKKGMTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFQG
                     LDVKFHTQAFSAHGSGKEVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIA
                     ARGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWTTGHEWILA
                     DKRPTAWFLPSIRAANVMAASLRKAGKNVVVLNRKTFEKEYPTIKQKKPDFILATDIA
                     EMGANLCVERVLDCRTAYKPVLVDEGKKVAIKGPLRISASSAAQRRGRIGRNPNRDGD
                     SYYYSEPTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGIEGTKTPVSPGEMRLRDD
                     QRRVFRELVRGCDLPVWLAWQVAKAGLKTNDRKWCFEGPEEHEILNDNGETVKCRSPG
                     GAKRALRPRWCDERVSSDQSALADFIKFAEGRRGAAEMLVILTELPDFLAKKGGEAMD
                     TISVFLHSEEGSRAYRNALSMMPEAMTIVMLFLLAGLLTSGAVIFFMSPKGMSRMSMA
                     MGTMAGSGYLMFLGGVKPTHISYVMLIFFVLMVVIIPEPGQQRSIQDNQVAYLIIGIL
                     TLLSVVAANELGMLEKTKEDFFGKRDITTPSGAIPWSWPDLDLKPGAAWTVYVGIVTM
                     LSPMLHHWIKVEYGNLSLSGIAQSASVLSFMDKGIPFMKMNISVVILLVSGWNSITVI
                     PLLCGIGGAMLHWTLILPGIKAQQSKLAQKRVFHGVAKNPVVDGNPTADIEEAPEMPA
                     LYEKKLALYLLLALSLMSVAMCRTPFSLAEGIVLSSAALGPLIEGNTSLLWNGPMAVS
                     MTGVMRGNYYAFVGVMYNLWKMKTERRGRASGKTLGEVWKRELNLLDKQQFEMYKRTD
                     IIEVDRDMARRHLAEGKVDTGVAVSRGTAKLRWFHERGYVKLEGRVTDLGCGRGGWCY
                     YAAAQKEVSGVKGYTLGRDGHEKPMNVQSLGWNIVTFKDKTDIHRLEPLKCETLLCDI
                     GESSPSSATEGERTLRVLDTVEKWLACGVDNFCIKVLAPYMPDVIEKLELLQRRFGGT
                     VIRNPLSRNSTHEMYYVSGARSNITFTVNQTSRLLMRRMRRPTGKVTLEADVILPIGT
                     RSVETDKGPLDKDAIEERVERIKNEYATTWFYDNDNPYRTWHYCGSYVTKTSGSAASM
                     INGVIKILTFPWDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVN
                     RWLFRHLSREKNPRLCTKEEFIAKVRSHAAVGAFLEEQEQWKTANEAVQDPKFWEMVD
                     AERKLHQQGRCQSCVYNMMGKREKKLSEFGKAKGSRAIWYMWLGARFLEFEALGFLNE
                     DHWASRENSGGGVEGIGLQYLGYVIRDLSTKEGGGFYADDTAGWDTRITEADLDDEQE
                     IMSYMSPEQRKLAWAIMEMTYKNKVVKVLRPAPGGKAFMDIISRRDQRGSGQVVTYAL
                     NTITNLKVQLIRMAEAEMVINHQHVQECGENVLERLETWLAENGCDRLSRMAVSGDDC
                     VVRPVDDRFGLALSHLNAMSKVRKDISEWQPSKGWTDWENVPFCSHHFHELVLKDGRK
                     IVVPCRDQDELIGRGRVSPGNGWMIKETACLSKAYANMWSLMYFHKRDMRLLSFAVSS
                     AVPTAWVPSGRTTWSVHGRGEWMTTEDMLDVWNRVWVLNNPHMTDKTTIKEWRDVPYL
                     TKRQDKLCGSLIGMTNRATWASHIHLVIHRIRTLIGQEKFTDYLTVMDRYSVDADLQP
                     GELI"
ORIGIN      
        1 agtaaatccc tgggtgctaa ttgaggtgca ttggtctgca aatcgagttg ctaggcaata
       61 aacacatttg gattaatttt aatcgttcgt tgagcgatta gcagagaact gaccagagaa
      121 atgtctggtc gaaaagctca gggtagaacc ctgggcgtca atatggtaag acgaggggtt
      181 cgctccttgt caaacaaaat aaaacaaaaa acaaaacaga ttggaaacag acctggccct
      241 tcaagaggtg ttcaaggatt tattttcttc tttttgttta acattctgac tgggaaaaag
      301 ttgactgctc atctaaaaaa actttggagg atgcttgatc caaggcaggg acttgctgta
      361 ctgcgaaagg tcaaaagagt tgtagctagc ttaatgagag ggctgtcttc caggaaacgt
      421 agatccaatg aaatggccat gtttccactc ctgttactgg gtttgttggc tctatcagga
      481 ggagtgaccc tcgtcagaaa gaacagatgg ttgctcttga atgtaactgc tgaagacctg
      541 gggaaaacgt tttcagtggg aactgggaat tgcaccacga atattctgga agcaaaatac
      601 tggtgccccg actcaatgga gtacaattgt cccaatctca gtccaagaga agagccagat
      661 gacatagatt gctggtgtta tggagtggaa aatgtcagag tggcctatgg aagatgtgat
      721 gcggtagggc gatcaaaacg ctccaggaga gcgattgatc tacccacaca tgagaaccat
      781 ggactaaaga ctcggcagga gaagtggatg acaggcagaa tgggtgagag gcagctccag
      841 aagattgaaa gatggctggt taggaatcca ttttttgcgg tcacagcatt ggcaatagcc
      901 tatctggtgg gtaacaacac gacacaacga gtggtcatag cactactggt tctagcggtt
      961 ggtccagcgt actctgccca ttgcataggg ataaccgaca gagatttcat tgaaggtgtc
     1021 catgggggca cttgggtgtc agccactctg gagcaggaca aatgcgtgac tgtaatggcc
     1081 cctgacaaac cttctctgga catctcacta caaacagtgg caatcgatgg accggctgaa
     1141 gcgaggaagg tttgctacag tgcagtccta acccatgtga agatcaatga caaatgcccg
     1201 agcactggtg aggcccacct tgcagaggaa aatgatggtg acaatgcttg taaacggaca
     1261 tattctgaca gaggctgggg caatggctgt ggtctttttg ggaaaggaag catcgtggct
     1321 tgtgccaagt ttacatgtgc caaatctatg agtctctttg aggtggatca gaccaaaatt
     1381 caatatgtca tcagggctca gctccatgtg ggtgccaaac aggaaaactg gaacacagac
     1441 ataaaaacgc tgaaatttga tgctctttct ggctcacagg aggctgaatt cactggttat
     1501 ggaaaagcaa cactggagtg tcaggtccag actgccgtgg actttgggaa cagctacatc
     1561 gcagagatgg aaaaagatag ctggatcgtt gaccgccaat gggcacagga cttgacactg
     1621 ccatggcaga gtgggagtgg tggcatatgg agagaaatgc accaccttgt tgagtttgag
     1681 cccccacatg ctgccacaat tagggtgctg gccttgggca atcaagaagg ctccttgaag
     1741 accgctctca caggcgctat gcgcgtcacc aaggatgaga atgacaacaa cttgtacaaa
     1801 ctgcacggtg gtcacgtctc ctgtagagtg aaactgtcag ctctcactct caaaggaaca
     1861 tcctacaaga tgtgtacaga caagatgtca tttgtcaaga atccaacgga tacagggcat
     1921 ggcacagttg tcatgcaagt aaaggtcccc aaaggggccc catgcaagat tcccgtgatt
     1981 gtggcagatg acctaacggc tgcggtgaac aaaggcatct tggtcactgt caatcctatt
     2041 gcatccacaa atgatgatga agttctgatt gaggtcaatc ccccttttgg ggatagctac
     2101 atcatagttg ggactggaga ttcacgactg acctatcagt ggcacaaaga agggagttca
     2161 ataggaaaat tgtttacaca gacaatgaaa ggagctgaac gtcttgcagt gatgggtgat
     2221 gctgcttggg attttagttc tgctgggggg ttcttcacat ctgtgggaaa aggaatccat
     2281 accgtgtttg gctcggcctt ccaggggctg tttggtggct tgagttggat cacgaaagtc
     2341 atcatgggag ccgtgctcat ctgggtggga ataaacaccc gcaacatgac catgtccatg
     2401 tccatgatct tggtaggtgt gatcatgatg tttctttcac taggagttgg ggctgaccaa
     2461 ggatgtgctg ttaactttgg gaaacgcgag ctcaaatgcg gagatggcat ctttgtgttt
     2521 agagactctg atgactggct cacaaagtac tcatactatc ctgaagaccc tgtcaaattg
     2581 gcatccatta ttaaagcctc ccacgaggag ggcaaatgtg gattgaattc agttgattcc
     2641 ctcgaacacg agatgtggag gagtagggcg gatgagatca acgccatttt tgaagaaaat
     2701 gaggtagaca tctcggtcgt cgtccaagac ccaaagaaca tctatcaaag agggacccac
     2761 ccgttctcaa ggatccgtga cggattgcag tatggatgga agacctgggg aaaaaacctt
     2821 gttttctcac cagggaggaa gaacggcagc ttcatcattg acgggaagtc acgaaaggag
     2881 tgccccttct ctaacagagt gtggaactca ttccagattg aggagtttgg catgggggtc
     2941 ttcacaacac gagtttttat ggacgcgacc tttgactatt cagtggactg tgatggagcc
     3001 atcctgggtg cagcggtgaa tggaaagaag agtgcccatg gatcacccac attttggatg
     3061 ggaagtcatg aagtcaatgg aacgtggatg atacacactc tggaaactct tgattacaag
     3121 gagtgtgaat ggccactgac acacactatt ggaacctcag tagaagaaag tgacatgttc
     3181 atgccccggt ccattggagg tccggtgagt tctcacaacc gcatcccggg ttacaaggtg
     3241 caaactaatg ggccatggat gcaagtccct ctggaagtaa aaagggaagt ctgtccaggg
     3301 acaagcgtgg tggtggactc caactgtgat ggacgtggaa aatcaacaag atcaaccact
     3361 gacagtggga aaataatccc ggaatggtgt tgcagatcct gtaccatgcc tccagtcagc
     3421 ttccatggaa gcgatggttg ttggtatcct atggagatca gacccatgaa aacatccgac
     3481 agccacctag tgaggtcctg ggtgactgca ggagaagttc atgcagtacc ctttgggctg
     3541 gtgagcatga tgattgccat ggaggtggtg ttgcgcagaa ggcaaggacc aaaacaaatg
     3601 ctggtaggag gagttgtgct gcttggagcg atgttagtgg gacaagtcac agtcttagac
     3661 cttgtgaagt ttgttgtggc agtgggattg cacttccatg agattaacaa cggaggagat
     3721 gccatgtaca tggcattaat tgccagcttt tccatccggc caggcctgct catgggcttt
     3781 gggctgcgca cactgtggag tcctcgggag cgacttgtaa tggcatttgg agcagccatg
     3841 gttgagattg ccctaggtgg aatgatgggt gggctttggc agtacttgaa cgccgtttca
     3901 ctgtgtgtgc tcaccataaa tgcaatctca tcaaggaagg cctcaaatat gatcctcccc
     3961 ctgatggcac tcatgactcc catgacaatg catgaggtga ggatggcgac gatgctgttc
     4021 tgcactgttg tcataatagg ggtgcttcat cagaattcaa aagacacatc tatgcaaaag
     4081 accattccca ttgtagccct gacactgacc tcatacatgg gcttgaccca gccctttcta
     4141 gggctgtgtg catacatgtc cacgcaggtg tttggcagaa ggagtatacc tgtgaatgaa
     4201 gccttggcag cggctggctt ggtgggagtg ctagcagggc tagccttcca agacatggaa
     4261 aactttttgg gtccaatagc ggtggggggg atcctcatga tgctagttag tgtggcaggg
     4321 agagttgatg gactagagct caagaaactt ggtgaaatct cctgggaaga agaagctgaa
     4381 ataagtggaa gctctagccg ctatgatgtg gcactcagtg agcagggtga atttaaactc
     4441 ctctcagagg acaaagtgcc ctgggaccag atagtaatga catccctagc cctcgtggga
     4501 gcagccatac atccatttgc cctcttgctg gtcctgggag gatggatcct gcacattaaa
     4561 ggtgctagga ggagtgggga tgttctttgg gacattccta cgccaaaggt gattgaggaa
     4621 tgtgagcacc tggaggatgg aatctatggc atattccagt caaccttcct tggagcctcg
     4681 cagcgaggtg ttggagtggc gcagggaggg gtcttccaca caatgtggca tgtcactagg
     4741 ggggcattcc tcttgaggaa tggaaagaaa ctggttccgt cttgggcttc tgtgaaggaa
     4801 gatctggtgg cttatggtgg ttcctggaaa ctagacggga gatgggatgg tgaggaggaa
     4861 gtccaactca tcgctgctgt gcctggaaaa tctgttgtca acgttcaaac aaaaccaagc
     4921 ttgttcagag tgaaaaatgg tggtgagatt ggagcagttg ctctagacta ccccagtgga
     4981 acctcaggct cccccattgt gaaccgaaat ggtgaagtgg ttgggctcta tggcaatgga
     5041 attctggtgg gtgataactc ctttgtgtct gccatctcac aaactgaatt gaaggaagaa
     5101 tccaaagaag aactgcaaga aataccaact atgctgaaga aaggaatgac caccatcctt
     5161 gacttccacc ctggggcggg gaaaacccgt aggttcctgc ctcaaatatt ggcggagtgt
     5221 gccagaaggc gtttgcgcac tctggtatta gcacccacca gggttgtttt gtcagagatg
     5281 aaagaagctt ttcaggggtt ggatgtgaaa ttccacacac aagctttctc agcccatggg
     5341 agtgggaagg aggtcattga tgcaatgtgc catgcaaccc ttacatatag aatgctggaa
     5401 ccaacaaggg tagtcaactg ggaggtcatt atcatggatg aggcgcactt cctggaccct
     5461 gctagcatag cagcgagagg ctgggcggct catagagcaa gagcaaatga gagcgccacc
     5521 atacttatga ccgccacccc accaggcacc agtgacgagt tccctcactc caatggtgag
     5581 attgaggacg tccagactga catccccagc gagccatgga ccacaggaca tgaatggatc
     5641 ttggcggaca agcgcccaac tgcatggttc cttccatcga tcagagcagc aaatgtcatg
     5701 gcagcctcgc tgcggaaagc ggggaaaaat gtggtggtgc tgaataggaa aacctttgaa
     5761 aaggagtacc ccaccattaa gcagaagaaa ccggatttca tacttgccac cgatatcgct
     5821 gagatgggag caaacctgtg tgtggagaga gtcttggact gcagaactgc ctacaagcct
     5881 gtcctggttg atgaagggaa gaaggtggcc atcaaagggc cgctacgaat ctcagcgtca
     5941 tcggccgctc agaggagagg acgcattgga cgcaatccca acagagatgg tgactcttac
     6001 tactactcag aacctaccag tgaggacaat gcacaccatg tgtgctggct ggaggcttcc
     6061 atgctcctgg ataacatgga ggttagaggg gggatggttg ctccacttta tggcattgag
     6121 ggaacaaaga ctcccgtctc tccaggagaa atgaggctaa gagatgatca gagaagggtc
     6181 tttagagagt tggtgcgagg gtgtgatttg ccagtgtggt tggcatggca agtggcaaaa
     6241 gccggcctga agaccaatga ccgcaaatgg tgttttgagg gtcccgaaga gcatgaaata
     6301 ctcaatgaca atggtgaaac agtaaagtgt agatctccgg gcggagcaaa aagagcattg
     6361 agacctagat ggtgtgacga gagagtttcc tcagaccaga gtgccttggc tgacttcatt
     6421 aagtttgcag aaggtagaag aggggctgct gagatgcttg tgatcctcac ggagttgccc
     6481 gacttcctgg caaagaaggg tggggaagcc atggatacca tcagtgtgtt cctacattct
     6541 gaagagggtt caagagcgta cagaaatgcc ctgtcaatga tgccagaagc catgaccatt
     6601 gtcatgctct tcctgcttgc cggactcttg acctcaggag cggtgatttt cttcatgtcg
     6661 ccaaaaggca tgagtagaat gtcaatggca atgggtacca tggctggcag tggatatctc
     6721 atgtttctgg ggggagtaaa accaacccac atctcttacg tcatgttaat attctttgtc
     6781 ctcatggtcg tcataattcc cgaaccagga cagcagagat caatccagga taaccaagtt
     6841 gcctacctca taattgggat cttgacattg ttatcagttg tggcagctaa tgaactaggg
     6901 atgctggaga agaccaagga agattttttt ggaaagagag acatcacaac accaagtggg
     6961 gctatcccat ggagttggcc tgacctggat ctgaaacctg gggcagcctg gacagtctat
     7021 gtgggaatcg tgacgatgtt gtctcccatg ttacatcatt ggataaaagt tgagtatggc
     7081 aatttgtcac tatcgggaat agcccaatct gcctcagttc tttcatttat ggacaaagga
     7141 attcccttca tgaaaatgaa catatctgtg gtcatacttt tggtcagtgg ctggaattca
     7201 atcacagtga tccctctgtt gtgcggcatt ggtggagcca tgttgcactg gacgctcata
     7261 cttcctggga ttaaagccca gcaatcaaag ctggctcaaa aaagagtttt tcatggagtg
     7321 gcaaaaaatc cagttgttga tggcaatcca actgctgaca ttgaggaagc cccagaaatg
     7381 ccagctttat atgaaaagaa gctggctctt tacctccttc tggccctaag cctcatgtca
     7441 gttgccatgt gcagaacccc tttttcctta gcggaaggaa tagtactgtc atctgccgcc
     7501 cttggacctc tcattgaggg gaacactagt ctgttgtgga atggcccaat ggccgtttcc
     7561 atgactggag tcatgcgtgg caactactac gcttttgtgg gagtcatgta caatctctgg
     7621 aaaatgaaaa cagagcgtag agggagagca agtggaaaaa cattgggtga ggtctggaag
     7681 cgtgaactta acttgctaga caaacaacaa tttgaaatgt acaaaagaac agacatcatt
     7741 gaggtggacc gagacatggc acgacgacac ttggcagagg gaaaggtgga cacgggagtg
     7801 gccgtgtcga gagggactgc aaagctgaga tggttccacg agcgtggcta tgtgaagcta
     7861 gaaggaaggg tcaccgatct tgggtgtgga cgtggaggct ggtgctacta tgcagcagct
     7921 caaaaagaag ttagtggtgt gaaggggtat acccttggca gagatggcca tgagaaacct
     7981 atgaatgtcc aaagcttggg atggaatatt gtgactttta aggacaagac tgatattcac
     8041 cgactggagc cactcaagtg tgaaactctc ctctgtgaca tcggagaatc gtccccatcc
     8101 tccgcaactg agggtgagag gaccttaaga gttctggaca cagttgaaaa gtggttggct
     8161 tgtggagtgg ataacttttg catcaaagtt ctggcaccat acatgcccga tgtgatagag
     8221 aaactggagc ttcttcaaag aagattcggt ggaaccgtca tcaggaatcc tctttccagg
     8281 aattccactc atgaaatgta ctacgtgtca ggagcaagaa gtaacatcac attcacagtc
     8341 aatcagacat cacgcctgct gatgcgaagg atgaggcggc ccacaggcaa agttaccttg
     8401 gaagctgatg tcattcttcc gataggcacg cgcagtgtgg aaactgataa aggcccattg
     8461 gataaggatg ctattgagga aagagttgag agaatcaaga atgaatatgc cactacatgg
     8521 ttctatgaca atgacaaccc gtatagaacg tggcattatt gtggctccta tgtgaccaaa
     8581 acgtcaggaa gtgcagccag catgataaat ggagtcatca aaatcttgac ttttccatgg
     8641 gacaggatag aagaagtcac aagaatggca atgactgaca ccacaccttt tggacaacaa
     8701 agagttttca aggagaaagt agacacaaga gcaaaagacc ctcctgctgg aacaaggaag
     8761 atcatgaagg tggtgaatag atggttgttt cggcatctgt ccagggagaa gaaccctagg
     8821 ttgtgcacca aagaagagtt cattgccaaa gtgcggagcc atgccgcagt gggggctttt
     8881 ctagaggagc aagagcagtg gaaaacggcc aatgaggcag tccaggatcc aaagttttgg
     8941 gagatggtcg atgcagaacg caaacttcat cagcaggggc gatgccagtc ctgtgtgtac
     9001 aacatgatgg gaaagaggga aaagaaactc tctgaatttg gaaaggccaa agggagccgt
     9061 gctatctggt acatgtggct tggggcacgg tttcttgagt ttgaggctct tgggttctta
     9121 aatgaagatc actgggcctc ccgggagaac tcggggggag gagttgaggg cataggactc
     9181 cagtacttgg gctatgttat cagggacttg tcaaccaaag aaggtggagg gttttatgcg
     9241 gatgacacgg cagggtggga cacacgcatc acagaagctg acctggatga cgagcaagag
     9301 atcatgagtt acatgagccc tgaacaaagg aagctggcct gggctataat ggaaatgaca
     9361 tacaagaaca aagtggttaa ggtgctgagg ccagccccag gaggcaaggc cttcatggac
     9421 atcatcagcc ggagagacca aagggggtca ggacaagttg tgacatacgc cctcaacacc
     9481 ataaccaatc taaaagtcca gctcataaga atggctgaag ctgaaatggt gattaaccat
     9541 cagcatgtgc aggagtgtgg tgaaaatgtc ttagagcggc tcgaaacttg gcttgctgaa
     9601 aatggatgtg acagattgag ccgaatggct gtgagtggag atgattgtgt ggtgagaccg
     9661 gtggatgaca gatttggcct ggccctttcc catctcaatg caatgtccaa agttaggaag
     9721 gacatttcag aatggcaacc ctccaaagga tggacagatt gggaaaatgt tcctttctgc
     9781 tcccaccact tccatgaact ggtgttgaaa gatgggagga agatagtggt gccttgcaga
     9841 gatcaagatg aactgatagg gagagggaga gtgtccccag gaaatggctg gatgatcaag
     9901 gaaacagcct gcctcagcaa agcttatgca aacatgtggt cactgatgta cttccacaag
     9961 agggacatga ggctactttc atttgctgtc tcctccgctg ttccaacagc ctgggtgccc
    10021 agtggaagga caacgtggtc tgtccacgga agaggggagt ggatgacaac tgaggacatg
    10081 ctagatgtct ggaacagggt gtgggtgttg aataacccgc acatgacgga caaaacaacc
    10141 atcaaggagt ggagagatgt tccctacctc acaaagagac aggataagct ttgcgggtca
    10201 ctgataggaa tgacaaacag ggccacatgg gcatctcaca tccaccttgt gatccaccgg
    10261 atcagaactc taataggtca agagaagttc acagactacc tcaccgtcat ggacaggtat
    10321 tctgttgatg ccgaccttca gccaggagag cttatttgag acattacaac atggaaaacc
    10381 gggataaaaa ctacgggtgg agaaccggac tccccacttg agaaatgtaa ataagaaacc
    10441 gggataaaaa caacggatgg agaaccggac tccacactga ataggttata aacgtcagcc
    10501 caggatccaa aatttgaatg ggtcttgcca ccgctaagct gtgaggcggt gcgggctggg
    10561 acagccgttt cccgggcaac gacatgcctg gtttctggga cttcccaacc cggagtaaaa
    10621 cgaaggagcc tccgccacca ccctcccacg gggtgttgga aagatggggt ctagaggtta
    10681 gaggagaccc tccagggaaa ttagtgggac catattgacg ccagggaaag accggagtgg
    10741 ttctctgctt ttcctccagg ggtctgcgag cacagtttgc tctagaagaa gcagaccttt
    10801 ggatgacaaa acacaaaacc act

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
1846518465100%0.0100%KX010994.1
1809018090100%0.099%AY968064.1
1800618006100%0.099%KX027336.1
1800618006100%0.099%KX010995.1
1796217962100%0.099%KX010996.1
1140011400100%0.085%DQ235229.1
1137611376100%0.085%AY968065.1
1135311353100%0.085%JN620362.1
87908790100%0.079%JF912179.1
87878787100%0.079%AY603338.1
87638763100%0.079%JF912186.1
87588758100%0.079%JX898868.1
87518751100%0.079%JF912184.1
87448744100%0.079%JF912185.1
87428742100%0.079%AY572535.1
87408740100%0.079%JF912183.1
87258725100%0.079%JX898873.1
87228722100%0.079%JX898874.1
87208720100%0.079%KM388817.1
87208720100%0.079%JX898870.1
87168716100%0.079%JX898875.1
87028702100%0.079%KM388816.1
87028702100%0.079%JF912187.1
86988698100%0.079%JF912188.1
86918691100%0.079%JX898880.1
86898689100%0.079%JX898877.1
86888688100%0.079%JX898878.1
86718671100%0.079%JF912189.1
86688668100%0.079%JF912180.1
86668666100%0.079%JX898876.1
86668666100%0.079%HM582851.1
86648664100%0.079%AY640589.1
86618661100%0.079%KF769016.1
86578657100%0.079%JF912190.1
86488648100%0.079%KM388815.1
86488648100%0.079%KM388814.1
86468646100%0.079%JX898869.1
86308630100%0.079%JF912182.1
86088608100%0.079%KF907504.1
86038603100%0.079%KM388818.1
86018601100%0.079%U21056.1
85818581100%0.079%JX898872.1
85748574100%0.079%JX898871.1
85618561100%0.079%U21055.1
85528552100%0.079%DQ100292.1
85408540100%0.079%U54798.1
85348534100%0.079%U17066.1
85338533100%0.079%GQ379162.1
85298529100%0.079%X03700.1
85258525100%0.078%KF769015.1
85258525100%0.078%JN811143.1
85258525100%0.078%JX503529.1
85258525100%0.078%JN628279.1
85258525100%0.078%AF052444.1
85208520100%0.078%JX949181.1
85208520100%0.078%GQ379163.1
85208520100%0.078%FJ654700.1
85208520100%0.078%DQ118157.1
85208520100%0.078%X15062.1
85208520100%0.078%AF052446.1
85208520100%0.078%AF052439.1
85208520100%0.078%AF052437.1
85208520100%0.078%U17067.1
85168516100%0.078%JN811141.1
85168516100%0.078%AF052445.1
85168516100%0.078%AF052438.1
85118511100%0.078%JN811142.1
84778477100%0.078%AF094612.1
84038403100%0.078%JF912181.1
8228834397%0.079%DQ322634.1
8228834397%0.079%DQ322633.1
6551688781%0.078%DQ322635.1
3162316234%0.080%D14458.1
2250225026%0.078%AF052443.1
2246224626%0.079%GU951804.1
2246224626%0.078%AF052441.1
2138251627%0.080%AH005112.2
2129212922%0.080%DQ322638.1
2125212522%0.080%AF052440.1
2125212522%0.080%L06480.1
2098209817%0.086%AY960140.1
1929192922%0.078%DQ322642.1
1929192922%0.078%DQ322640.1
1810181014%0.087%U23578.1
1801180114%0.087%U23577.1
1786178614%0.087%AY839636.1
1773177314%0.087%DQ068260.1
1768176814%0.087%DQ068264.1
1768176814%0.087%DQ068263.1
1768176814%0.087%DQ068262.1
1764176414%0.086%U23569.1
1759175914%0.086%U23575.1
1755175514%0.086%U23573.1
1750175014%0.086%AY839634.1
1745174514%0.086%U23576.1
1743174317%0.081%AY960138.1
1732173214%0.086%U23571.1
1710171017%0.081%AY960137.1
1680168017%0.081%AY960139.1

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LOCUS       KX010995               10822 bp    RNA     linear   VRL 08-MAY-2016
DEFINITION  Yellow fever virus isolate CIC2, complete genome.
ACCESSION   KX010995
VERSION     KX010995.1  GI:1024994385
KEYWORDS    .
SOURCE      Yellow fever virus (YFV)
  ORGANISM  Yellow fever virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus; Yellow fever virus group.
REFERENCE   1  (bases 1 to 10822)
  AUTHORS   Cui,S., Liang,Z., Li,J., Wang,Q., Chen,L., Li,X., Huo,D., Zheng,Y.,
            Chen,Y., Zhang,L., Dou,X., Tian,L. and Sun,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2016) Department of Infectious Disease and
            Endemic Disease Control, Beijing Center for Disease Prevetion and
            Control, 16 Hepingli Middle Street, Dongcheng District, Beijing
            100013, China
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: samtools v. v1.2
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10822
                     /organism="Yellow fever virus"
                     /mol_type="genomic RNA"
                     /isolate="CIC2"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:11089"
                     /country="China"
                     /collection_date="17-Mar-2016"
                     /note="clinical-imported case 2"
     CDS             119..10357
                     /note="gp1"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="ANC33490.1"
                     /db_xref="GI:1024994386"
                     /translation="MSGRKAQGRTLGVNMVRRGVRSLSNKIKQKTKQIGNRPGPSRGV
                     QGFIFFFLFNILTGKKLTAHLKKLWRMLDPRQGLAVLRKVKRVVASLMRGLASRKRRS
                     NEMAMVPLLLLGLLALSGGVTLVRKNRWLLLNVTAEDLGKTFSVGTGNCTTNILEAKY
                     WCPDSMEYNCPNLSPREEPDDIDCWCYGVENVRVAYGRCDAVGRSKRSRRAIDLPTHE
                     NHGLKTRQEKWMTGRMGERQLQKIERWLVRNPFFAVTALAIAYLVGNNTTQRVVIALL
                     VLAVGPAYSAHCIGITDRDFIEGVHGGTWVSATLEQDKCVTVMAPDKPSLDISLQTVA
                     IDGPAEARKVCYSAVLTHVKINDKCPSTGEAHLAEENDGDNACKRTYSDRGWGNGCGL
                     FGKGSIVACAKFTCAKSMSLFEVDQTKIQYVIRAQLHVGAKQENWNTDIKTLKFDALS
                     GSQEAEFTGYGKATLECQVQTAVDFGNSYIAEMEKDSWIVDRQWAQDLTLPWQSGSGG
                     IWREMHHLVEFEPPHAATIRVLALGNQEGSLKTALTGAMRVTKDENDNNLYKLHGGHV
                     SCRVKLSALTLKGTSYKMCTDKMSFVKNPTDTGHGTVVMQVKVPKGAPCKIPVIVADD
                     LTAAVNKGILVTVNPIASTNDDEVLIEVNPPFGDSYIIVGTGDSRLTYQWHKEGSSIG
                     KLFTQTMKGAERLAVMGDAAWDFSSAGGFFTSVGKGIHTVFGSAFQGLFGGLSWITKV
                     IMGAVLIWVGINTRNMTMSMSMILVGVIMMFLSLGVGADQGCAVNFGKRELKCGDGIF
                     VFRDSDDWLTKYSYYPEDPVKLASIIKASHEEGKCGLNSVDSLXHEMWRSRADEINAI
                     FEENEVDISVVVQDPKNIYQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIID
                     GKSRKECPFSNRVWNSFQIEEFGMGVFTTRVFMDATFDYSVDCDGAILGAAVNGKKSA
                     HGSPTFWMGSHEVNGTWMIHTLETLDYKECEWPLTHTIGTSVEESDMFMPRSIGGPVS
                     SHNRIPGYKVQTNGPWMQVPLEVKREVCPGTSVVVDSNCDGRGKSTRSTTDSGKIIPE
                     WCCRSCTMPPVSFHGSDGCWYPXEIRPMRTSDSHLVRSWVTAGEVHAVPFGLVSMMIA
                     MEVVLRRRQGPKQMLVGGVVLLGAMLVGQVTVLDLVKFVVAVGLHFHEINNGGDAMYM
                     ALIASFSIRPGLLMGFGLRTLWSPRERLVMAFGAAMVEIAXGGMMGGLWQYLNAVSLC
                     VLTINAISSRKASNMILPLMALMTPMTMHEVRMATMLFCTVVIIGVLHQNSKDTSMQK
                     TIPIVALTLTSYMGLTQPFLGLCAYMSTQVFGRRSIPVNEALAAAGLVGVLAGLAFQD
                     MENFLGPMAVGGILMMLVSVAGRVDGLELRKLGEISWEEEAEISGSSSRYDVALSEQG
                     EFKLLSEDKVPWDQIVMTSLALVGAAIHPFALLLVLGGWILHIKGARRSGDVLWDIPT
                     PKVIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLLRNGKKLV
                     PSWASVKEDLVAYGGSWKLDGRWDGEEEVQLIAAVPGKSVVNVQTKPSLFKVKNGGEI
                     GAVALDYPSGTSGSPIVNRNGEVVGLYGNGILVGDNSFVSAISQTELKEESKEELQEI
                     PTMLKKGMTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFQG
                     LDVKFHTQAFSAHGSGKEVIDAMCHATLTYRMLEPTRVVNWEVIIMDEXHFLDPASIA
                     ARGWAAHRARAXESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWTTGHEWILA
                     DKRPTAWFLPSIRAANVMAASLRKAGKNVVVLNRKTFEKEYPTIKQKKPDFILATDIA
                     EMGANLCVERVLDCRTAYKPVLVDEGKKVAIKGPLRISASSAAQRRGRIGRNPNRDGD
                     SYYYSEPTSEDNAHHVCWLEASMLLDNMEVXGGMVAPLYGIEGTKTPVSPGEMRLRDD
                     QRRVFRELVRGCDLPVWLAWQVAKAGLKTNDRKWCFEGPEEHEILNDNGETVKCRSPG
                     GAKRALRPRWCDERVSSDQSALADFIKFAEGRRGAAEMLVILTELPDFLAKKGGEAMD
                     TISVFLHSEEGSRAYRNALSMMPEAMTIVMLFLLAGLLTSGAVIFFMSPKGMSRMSMA
                     MGTMAGSGYLMFLGGVKPTHISYVMLIFFVLMVVIIPEPGQQRSIQDNQVAYLIIGIL
                     TLLSVVAANELGMLEKTKEDFFGKRDIXTPSGAIPWSWPDLDLKPGAAWTVYVGIVTM
                     LSPMLHHWIKVEYGNLSLSGIAQSASVLSFMDKGIPFMKMNISVVILLVSGWNSITVI
                     PLLCGIGGAMLHWTLILPGIKAQQSKLAQKRVFHGVAKNPVVDGNPTADIEEAPEMPA
                     LYEKKLALYLLLALSLMSVAMCRTPFSLAEGIVLSSAALGPLIEGNTSLLWNGPMAVS
                     MTGVMRGNYYAFVGVMYNLWKMKTGRRGRASGKTLGEVWKRELNLLDKQQFEMYKRTD
                     IIEVDRDMARRHLAEGKVDTGVAVSRGTAKLRWFHERGYVKLEGRVTDLGCGRGGWCY
                     YAAAQKEVSGVKGYTLGRDGHEKPMNVQSLGWNIVTFKDKTDIHRLEPLKCETLLCDI
                     GESSPSSATEGERTLRVLDTVEKWLACGVDNFCIKVLAPYMPDVIEKLELLQRRFGGT
                     VIRNPLSRNSTHEMYYVSGARSNITFTVNQTSRLLMRRMRRPTGKVTLEADVILPIGT
                     RSVETDKGPLDKDAIEERVERIKNEYATTWFYDNDNPYRTWHYCGSYVTKTSGSAASM
                     INGVIKILTFPWDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVN
                     RWLFRHLSREKNPRLCTKEEFIAKVRSHAAVGAFLEEQEQWKTANEAVLDPKFWEMVD
                     AERKLHQQGRCQSCVYNMMGKREKKLSEFGKAKGSRAIWYMWLGARFLEFEALGFLNE
                     DHWASRENSGGGVEGIGLQYLGYVIRDLSTKEGGGFYADDTAGWDTRITEADLDDEQE
                     IMSYMSPEQRKLAWAIMEMTYKNKVVKVLRPAPGGKAFMDIISRRDQRGSXQVVTYAL
                     NTITNLKVQLIRMAEAEMVINHQHVQECGENVLERLETWLAENGCDRLSRMAVSGDDC
                     VVRPVDDRFGLALSHLNAMSKVRKDISEWQPSKGWTDWENVPFCSHHFHELVLKDGRK
                     IVVPCRDQDELIGRGRVSPGNGWMIKETACLSKAYANMWSLMYFHKRDMRLLSFAVSS
                     AVPTAWVPSGRTTWSVHGRGEWMTTEDMLDVWNRVWVLNNPHMTDKTTIKEWRDAPYL
                     TKRQDKLCGSLIGMTNRATWASHIHLVIHRIRTLIGQEKFTDYLTVMDRYSVDADLQP
                     GELI"
ORIGIN      
        1 taaatccctg ggtgctaatt gaggtgcatt ggtctgcaaa tcgagttgct aggcaataaa
       61 cacatttgga ttaattttaa tcgttcgttg agcgattagc agagaactga ccagagaaat
      121 gtctggtcga aaagctcagg gtagaaccct gggcgtcaat atggtaagac gaggggttcg
      181 ctccttgtca aacaaaataa aacaaaaaac aaaacagatt ggaaacagac ctggcccttc
      241 aagaggtgtt caaggattta ttttcttctt tttgtttaac attctgactg ggaaaaagtt
      301 gactgctcat ctaaaaaaac tctggaggat gcttgatcca aggcaggggc ttgctgtact
      361 gcgaaaggtc aaaagagttg tagctagctt aatgagaggg ctggcttcca ggaaacgtag
      421 atccaatgaa atggccatgg taccactcct gttactgggt ttgttggctc tatcaggagg
      481 agtgaccctc gtcagaaaga acagatggtt gctcctgaat gtaactgctg aagacctggg
      541 gaaaacgttt tcagtgggaa ctgggaattg caccacgaat attctggaag caaaatactg
      601 gtgccccgac tcaatggaat acaattgccc caatctcagt ccaagagaag agccagatga
      661 catagattgc tggtgttatg gagtggaaaa tgtcagagtg gcctatggaa gatgtgatgc
      721 ggtagggcga tcaaaacgct ccaggagagc gattgatcta cccacacatg agaaccatgg
      781 actaaagact cggcaggaga agtggatgac aggcagaatg ggtgagaggc agctccagaa
      841 gattgaaaga tggctggtta ggaatccatt ttttgcggtc acagcattgg caatagccta
      901 tctggtgggt aacaacacga cacaacgagt ggtcatagca ctactggttc tagcggttgg
      961 tccagcgtac tctgcccatt gcatagggat aaccgacaga gatttcattg aaggtgtcca
     1021 tgggggcact tgggtgtcag ccactctgga gcaggacaaa tgcgtgactg taatggcccc
     1081 tgacaaacct tctctggaca tctcactaca aacagtggca atcgatggac cggctgaagc
     1141 gaggaaggtt tgctacagtg cagtcctaac ccatgtgaag atcaatgaca aatgcccgag
     1201 cactggtgag gcccaccttg cagaggaaaa tgatggtgac aatgcttgta aacggacata
     1261 ttctgacaga ggctggggca atggctgtgg tctttttggg aaaggaagca tcgtggcttg
     1321 tgccaagttt acatgtgcca aatctatgag tctctttgag gtggatcaga ccaaaatcca
     1381 atatgtcatc agggcccagc tccatgtggg tgctaaacag gaaaactgga acacagacat
     1441 aaaaacgctg aaatttgatg ctctttctgg ctcacaggag gctgaattca ctggttatgg
     1501 aaargcaaca ctagagtgtc aggtccagac tgccgtggac tttgggaaca gctacatcgc
     1561 agagatggaa aaagatagct ggatcgttga ccgccaatgg gcacaggact tgacactgcc
     1621 atggcagagt gggagtggtg gcatatggag agaaatgcac caccttgttg agtttgagcc
     1681 cccacatgct gccacaatta gggtgctggc cttgggcaat caagaaggct ccttgaagac
     1741 cgctctcaca ggcgctatgc gcgtcaccaa ggatgagaat gacaacaact tgtacaaact
     1801 gcacggtggt cacgtctcct gtagagtgaa actgtcagcc ctcactctca aaggaacatc
     1861 ctacaagatg tgcacagaca aaatgtcatt tgtcaagaat ccaacggata cagggcatgg
     1921 cacagttgtc atgcaagtaa aggtccccaa aggggcccca tgcaagattc ccgtgattgt
     1981 ggcagatgac ctaacggcag cagtgaacaa aggcatcttg gtcactgtca atcctattgc
     2041 atccacaaat gatgatgaag ttctgattga ggtcaatccc ccttttgggg atagctacat
     2101 catagttggg actggagact cacgactgac ctatcagtgg cacaaagaag ggagttcaat
     2161 aggaaaattg ttcacacaga caatgaaagg agctgaacgt cttgcagtga tgggtgatgc
     2221 tgcttgggat tttagttctg ctggggggtt cttcacatct gtgggaaaag gaatccatac
     2281 cgtgtttggc tcggccttcc aggggctgtt tggtggcttg agttggatca cgaaagtcat
     2341 catgggagcc gtgctcatct gggtgggaat aaacacccgc aacatgacca tgtccatgtc
     2401 catgatcttg gtaggtgtga tcatgatgtt tctttcacta ggagttgggg ctgaccaagg
     2461 atgtgctgtt aactttggga aacgcgagct caaatgcgga gatggcatct ttgtgtttag
     2521 agactctgat gactggctca caaagtactc atactatcct gaagaccctg tcaaattggc
     2581 atccatcatt aaagcctccc acgaggaggg caaatgtgga ttgaattcag ttgattccct
     2641 cgamcacgag atgtggagga gtagggcgga tgagatcaac gccatttttg aagaaaatga
     2701 agtagacatc tcggtcgtcg tccaagaccc aaagaacatc taccaaagag ggacccaccc
     2761 gttctcaagg atccgtgacg gattgcagta tggatggaag acctggggaa aaaaccttgt
     2821 tttctcacca gggaggaaga acggcagctt catcattgac gggaagtcac gaaaggagtg
     2881 ccccttctct aacagagtgt ggaactcatt ccagattgag gagtttggca tgggggtctt
     2941 cacaacacga gtktttatgg acgcgacctt tgactattca gtggactgtg atggagccat
     3001 cctgggtgca gcggtgaatg gaaagaagag tgcccatgga tcacccacat tttggatggg
     3061 aagtcatgaa gtcaatggaa cgtggatgat acacactttg gaaactcttg attacaagga
     3121 gtgtgaatgg ccactgacac acactattgg aacctcagta gaagaaagtg acatgttcat
     3181 gccccggtcc attggaggtc cggtgagttc tcacaaccgc atcccgggtt acaaggtgca
     3241 aaccaatggg ccatggatgc aagtccccct ggaagtaaaa agggaagtct gtccagggac
     3301 aagcgtggtg gtggactcca actgtgatgg acgtggaaaa tcaacgagat caaccactga
     3361 cagtgggaaa ataatcccgg aatggtgttg cagatcttgt actatgcctc cagtcagctt
     3421 ccatggaagc gatggttgtt ggtatcctay ggagatcaga cccatgagaa catccgacag
     3481 ccacctagtg agatcctggg tgactgcagg agaagttcat gcagtaccct ttggactggt
     3541 gagcatgatg attgccatgg aggtggtgtt gcgcagaagg caaggaccaa aacaaatgct
     3601 ggtaggagga gttgtgctgc ttggagcgat gttagtggga caagtcacag tcttagacct
     3661 tgtgaagttt gttgtggcag tgggattgca cttccatgaa attaataacg gaggagatgc
     3721 catgtacatg gcattgattg ccagcttttc catccggcca ggcctgctca tgggctttgg
     3781 gctgcgcaca ctgtggagtc ctcgcgagcg acttgtaatg gcatttggag cagccatggt
     3841 tgagattgcc ttmggtggaa tgatgggtgg gctttggcag tacttgaacg ccgtttcact
     3901 gtgtgtgctc accataaatg caatctcatc aaggaaggcc tcaaatatga tcctccccct
     3961 gatggcactc atgactccca tgacaatgca tgaggtgagg atggcgacga tgctgttctg
     4021 cactgttgtc ataatagggg tgcttcatca gaattcaaaa gacacatcta tgcaaaagac
     4081 cattcccatt gtagccctga cactgacctc atacatgggc ttgacccagc cctttctagg
     4141 gctgtgtgca tacatgtcca cgcaggtgtt tggcagaagg agtatacctg tgaatgaagc
     4201 cttggcagcg gctggcttgg tgggagtgct agcagggcta gccttccaag acatggaaaa
     4261 ctttttgggt ccaatggcgg tgggggggat cctcatgatg ttagttagtg tggcagggag
     4321 agttgatgga ctagagctca ggaaacttgg tgaaatctcc tgggaagaag aagctgaaat
     4381 aagtggaagc tctagccgct atgatgtggc actcagtgag cagggtgaat ttaaactcct
     4441 ctcagaggac aaagtgccct gggaccagat agtaatgaca tccctagccc tcgtgggagc
     4501 agccatacat ccatttgccc tcttgctggt cttgggagga tggatcctgc acattaaagg
     4561 tgctaggagg agtggggatg ttctttggga cattcctacg ccaaaggtga ttgaggaatg
     4621 tgagcacctg gaggatggga tctatggcat atttcagtca accttccttg gagcctcgca
     4681 gcgaggtgtt ggagtggcgc agggaggggt cttccacaca atgtggcatg tcactagggg
     4741 ggcattcctc ttgaggaatg gaaagaaact ggttccgtct tgggcttctg tgaaggagga
     4801 tctggtggct tatggtggtt cctggaaact agacgggaga tgggatggtg aggaggaagt
     4861 ccaactcatc gctgctgtgc ctggaaaatc tgttgtcaac gttcaaacaa aaccaagctt
     4921 gttcaaagtg aaaaatggtg gtgagattgg agcagttgct ctagactacc ccagtggaac
     4981 ctcaggctcc cccattgtga accgaaatgg tgaagtggty gggctctatg gcaatggaat
     5041 tctggtgggt gataactcct ttgtgtctgc catctcacaa actgaattga aggaagaatc
     5101 caaagaagaa ctgcaagaaa taccaactat gctgaaaaaa ggaatgacca ccatccttga
     5161 cttccaccct ggggcgggga aaacccgtag gttcctgcct caaatattgg cggagtgtgc
     5221 cagaaggcgt ttgcgcactc tggtattagc acccaccagg gttgttttgt cagagatgaa
     5281 agaagctttt caggggttgg atgtgaaatt ccacacacaa gctttctcag cccatgggag
     5341 tgggaaggag gtcattgacg caatgtgcca tgcaaccctt acatatagaa tgctggaacc
     5401 aacaagggta gtcaactggg aggtcattat tatggatgag gygcactttc tggatcctgc
     5461 tagcatagca gcgagaggct gggcggctca tagagcaaga gcaartgaga gcgccaccat
     5521 acttatgacc gccaccccac caggcaccag tgacgaattc cctcactcca atggtgagat
     5581 tgaggacgtc cagactgaca tccccagcga gccatggacc acaggacatg aatggatctt
     5641 ggcggacaag cgcccaactg catggttcct tccatcgatc agagcagcaa atgtcatggc
     5701 agcctcgctg cggaaagcgg graaaaatgt ggtggtactg aataggaaaa cctttgaaaa
     5761 ggagtacccc accattaagc agaagaaacc ggatttcatc cttgccaccg atatcgctga
     5821 gatgggagca aacttgtgtg tggagagagt cttggactgc agaactgcct acaagcctgt
     5881 cctggttgat gaagggaaga aggtggctat caaagggccg ctacgaatct cagcgtcatc
     5941 ggccgctcag aggagaggac gcattggacg caatcccaac agagatggtg actcttacta
     6001 ctactcagaa cctaccagtg aggacaatgc acaccatgtg tgctggctgg aggcttccat
     6061 gctcctggat aacatggagg ttwgaggggg gatggttgct ccactttatg gcattgaggg
     6121 aacaaagact cccgtctctc caggagaaat gaggctaaga gatgatcaga gaagggtctt
     6181 tagagagttg gtgcgagggt gtgatttgcc agtgtggttg gcatggcaag tggcaaaagc
     6241 cggcctgaag accaatgacc gcaaatggtg ttttgagggt cccgaagagc atgaaatact
     6301 caatgacaat ggtgaaacag taaagtgtag atctccgggc ggagcaaaaa gagcattgag
     6361 acctagatgg tgtgacgaga gagtttcctc agaccagagt gccttggctg acttcattaa
     6421 gtttgcagaa ggtagaagag gggctgctga gatgcttgtg atcctcacgg agttgcccga
     6481 cttcctggca aagaagggtg gggaagccat ggataccatc agtgtgttcc tacattctga
     6541 agagggttca agagcgtaca gaaatgccct gtcaatgatg ccagaagcca tgaccattgt
     6601 catgctcttc ctgcttgccg gactcttgac ctcaggagcg gtgattttct tcatgtcgcc
     6661 aaaaggcatg agtagaatgt caatggcaat gggtaccatg gctggcagtg gatatctcat
     6721 gtttctgggg ggagtaaaac caacccacat ctcttacgtc atgttaatat tctttgtcct
     6781 catggtcgtc ataattcccg aaccaggaca gcagagatca atccaggata accaagttgc
     6841 ctacctcata attgggatct tgacattgtt atcagttgtg gcagctaatg aactagggat
     6901 gctggagaag accaaggaag atttttttgg aaagagagac atcamaacac cragtggggc
     6961 aatcccatgg agttggcctg acctggatct gaaacctggg gcggcctgga cagtctatgt
     7021 gggaatcgtg acgatgttgt ctcccatgtt acaccattgg ataaaagttg agtatggcaa
     7081 tttgtcacta tcgggaatag cccaatctgc ctcagttctt tcatttatgg acaaaggaat
     7141 tcccttcatg aaaatgaata tatctgtggt catacttttg gtcagtggct ggaattcaat
     7201 cacagtgatc cctcttttgt gcggcattgg tggagccatg ctgcactgga cgctcatact
     7261 tcctgggatt aaagcccagc aatcaaagct ggctcaaaaa agagtttttc atggagtggc
     7321 aaaaaatcca gttgttgatg gcaatccaac tgctgacatt gaggaagccc cagaaatgcc
     7381 agctttatat gaaaagaagc tggctcttta cctccttctg gccctaagcc tcatgtcagt
     7441 tgccatgtgc agaacccctt tttccttagc ggaaggaata gtactgtcat ctgccgccct
     7501 tggaccwctc attgagggga acactagtct gttgtggaat ggcccaatgg ccgtttccat
     7561 gactggagtc atgcgtggca actactacgc ttttgtggga gtcatgtaca atctctggaa
     7621 aatgaaaaca gggcgtagag ggagagcaag tggaaaaaca ttgggtgagg tctggaagcg
     7681 tgaacttaac ttgctagaca aacaacaatt tgaaatgtac aaaagaacag acatcattga
     7741 ggtggaccga gacatggcac gacgacactt ggcagaggga aaggtggaca cgggagtggc
     7801 cgtgtcgaga gggactgcaa agctgagatg gttccacgag cgtggctatg tgaagctaga
     7861 aggaagggtc accgatcttg ggtgtggacg tggaggctgg tgctactatg cagcagctca
     7921 aaaagaagtt agtggtgtga aggggtatac ccttggcaga gatggccatg agaaacctat
     7981 gaatgtccaa agcttgggat ggaatattgt gacttttaag gacaagactg atattcaccg
     8041 actggagcca ctcaagtgtg aaactctcct ctgtgacatc ggagaatcgt ctccatcctc
     8101 cgcaactgag ggtgagagga ccttaagagt tctggacaca gttgaaaagt ggttggcttg
     8161 tggagtggat aacttttgca tcaaagttct ggcaccatac atgcccgatg tgatagagaa
     8221 actggagctt cttcaaagaa gattcggtgg aaccgtcatc aggaatcctc tgtccagaaa
     8281 ttctactcat gaaatgtact acgtttcagg agcaagaagt aacatcacat tcacagtcaa
     8341 ccagacatca cgcctgctga tgcgaaggat gaggcggccc acaggcaaag ttaccttgga
     8401 agctgatgtc attcttccga taggcacgcg cagtgtggaa actgataaag gcccattgga
     8461 taaggatgct attgaggaaa gagttgagag aatcaagaat gaatatgcca ctacatggtt
     8521 ctatgacaat gacaacccgt atagaacgtg gcattattgt ggctcctatg tgaccaaaac
     8581 gtcaggaagt gcagccagca tgataaatgg agtcatcaaa atcttgactt ttccatggga
     8641 caggatagaa gaagtcacaa gaatggcaat gactgacacc acaccttttg gacaacaaag
     8701 agttttcaag gagaaagtag acacaagagc aaaagaccct cctgctggaa caaggaagat
     8761 catgaaggtg gtgaatagat ggttgtttcg gcatctgtcc agggagaaga accccaggtt
     8821 gtgcaccaaa gaagaattca ttgccaaagt acggagccat gcagcagtgg gggcttttct
     8881 agaggaacaa gagcagtgga aaacggccaa tgaggcagtc cttgatccaa agttttggga
     8941 aatggtcgat gcagaacgca aacttcatca gcaggggcga tgccaatcct gtgtgtacaa
     9001 catgatggga aagagggaaa agaaactctc tgaatttgga aaggccaaag ggagccgtgc
     9061 tatctggtac atgtggcttg gggcacggtt ccttgagttt gargctcttg ggtttttaaa
     9121 tgaagatcac tgggcctccc gggagaactc ggggggagga gttgagggca taggactcca
     9181 gtacttgggc tatgttatca gggacttgtc aaccaaagaa ggtggagggt tttatgcgga
     9241 tgacacggca gggtgggaca cacgcatcac agaagctgac ctggatgacg agcaagagat
     9301 catgagttac atgagccctg aacaaaggaa gctggcctgg gctataatgg aaatgacata
     9361 caagaacaaa gtggttaagg tgctgaggcc agccccagga ggcaaggcct tcatggacat
     9421 catcagccgg agagaccaaa gggggtcarr acaagtkgtg acatacgccc tcaacaccat
     9481 aaccaatcta aaagtccagc tcataagaat ggctgaagct gaaatggtga tcaaccatca
     9541 gcatgtgcag gagtgtggtg aaaatgtctt agagcggctt gaaacttggc ttgctgaaaa
     9601 cggatgtgac agattgagcc gaatggctgt gagtggggat gattgtgttg tgagaccggt
     9661 ggatgacaga tttggcctgg ccctttccca tcttaatgca atgtccaaag ttaggaagga
     9721 catttcagaa tggcaaccct ccaaaggatg gacagattgg gaaaatgttc ctttctgctc
     9781 tcaccacttc catgaactgg tgttgaaaga tgggaggaag atagtggtgc cttgcagaga
     9841 ycaagatgaa ctgataggga gagggagagt gtccccagga aatggctgga tgatcaagga
     9901 aacagcctgc ctcagcaaag cttacgcaaa catgtggtca ctgatgtact ttcacaagag
     9961 ggacatgagg ctactttcat tcgctgtctc ctccgctgtt ccaacggcct gggtgcccag
    10021 tggaaggaca acgtggtctg tccacggaag aggggagtgg atgacaactg aggacatgct
    10081 agatgtctgg aacagggtgt gggtgttgaa taacccgcac atgacggaca aaacaaccat
    10141 caaggagtgg agagatgctc cctacctcac aaagagacag gataagcttt gcgggtcact
    10201 gataggaatg acaaacaggg ccacatgggc atctcacatc caccttgtga tccaccggat
    10261 cagaactcta ataggtcaag agaagttcac agactacctc accgtcatgg acaggtattc
    10321 tgttgatgcc gaccttcagc caggagagct tatctgagac attacaacat ggaaaaccgg
    10381 gataaaaact acgggtggag aaccggactc cccacttgaa amatgtaaat arraaaccgg
    10441 gatmaaaacw acgggyggag aaccggactc cccactgaat aggctataaa cgtcagccca
    10501 ggatccaaaa atttgaatgg gtcttgccac cgctaagctg tgaggcggtg cgggctggga
    10561 cagccgtttc ccgggcaacg acatgcctgg tttctgggac ttcccaaccc agagtaaaac
    10621 gaaggagcct ccgccaccac cctcccacgg ggtgttggaa agatggggtc tagaggttag
    10681 aggagaccct ccagggaaat tagtgggacc atattgacgc cagggaaaga ccggagtggt
    10741 tctctgcttt tcctccaggg gtctgcgagc acagtttgct ctagaagaag cagacctttg
    10801 gatgacaaaa cacaaaacca ct

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
1841718417100%0.0100%KX010995.1
1833018330100%0.099%KX027336.1
1830718307100%0.099%KX010996.1
1800618006100%0.099%KX010994.1
1765017650100%0.098%AY968064.1
1133911339100%0.085%DQ235229.1
1129511295100%0.084%JN620362.1
1129311293100%0.084%AY968065.1
87568756100%0.079%JF912179.1
87538753100%0.079%JF912185.1
87368736100%0.079%AY603338.1
87338733100%0.079%JF912186.1
87188718100%0.079%JF912184.1
87188718100%0.079%AY572535.1
87118711100%0.079%JX898873.1
87098709100%0.079%JF912183.1
87078707100%0.079%JX898874.1
87048704100%0.079%JX898868.1
87028702100%0.079%JX898875.1
86898689100%0.079%KM388817.1
86808680100%0.079%KM388816.1
86798679100%0.079%JF912187.1
86758675100%0.079%JX898870.1
86758675100%0.079%JF912188.1
86708670100%0.079%JX898880.1
86688668100%0.079%JX898877.1
86668666100%0.079%JX898878.1
86628662100%0.079%JF912180.1
86448644100%0.079%JX898876.1
86418641100%0.079%JF912182.1
86398639100%0.079%JF912189.1
86378637100%0.079%HM582851.1
86268626100%0.079%JF912190.1
86158615100%0.079%JX898869.1
86088608100%0.079%KM388815.1
86088608100%0.079%KM388814.1
86088608100%0.079%AY640589.1
86038603100%0.079%KF769016.1
85678567100%0.079%KM388818.1
85478547100%0.079%KF907504.1
85458545100%0.078%U21056.1
85228522100%0.078%JX898872.1
85138513100%0.078%JX898871.1
85048504100%0.078%DQ100292.1
85008500100%0.078%U21055.1
84868486100%0.078%GQ379162.1
84868486100%0.078%U17066.1
84828482100%0.078%X03700.1
84778477100%0.078%KF769015.1
84778477100%0.078%JN811143.1
84778477100%0.078%JX503529.1
84778477100%0.078%JN628279.1
84778477100%0.078%AF052444.1
84738473100%0.078%JX949181.1
84738473100%0.078%FJ654700.1
84738473100%0.078%DQ118157.1
84738473100%0.078%X15062.1
84738473100%0.078%AF052446.1
84738473100%0.078%AF052439.1
84738473100%0.078%AF052438.1
84738473100%0.078%AF052437.1
84738473100%0.078%U17067.1
84718471100%0.078%GQ379163.1
84688468100%0.078%JN811141.1
84688468100%0.078%AF052445.1
84668466100%0.078%U54798.1
84648464100%0.078%JN811142.1
83998399100%0.078%AF094612.1
83768376100%0.078%JF912181.1
8181829697%0.078%DQ322634.1
8181829697%0.078%DQ322633.1
6506683781%0.078%DQ322635.1
3146314634%0.080%D14458.1
2224222426%0.078%AF052443.1
2223222326%0.078%GU951804.1
2219221926%0.078%AF052441.1
2140250527%0.080%AH005112.2
2127212717%0.086%AY960140.1
2127212722%0.080%DQ322638.1
2122212222%0.080%AF052440.1
2122212222%0.080%L06480.1
1936193622%0.078%DQ322642.1
1936193622%0.078%DQ322640.1
1820182014%0.087%U23578.1
1811181114%0.087%U23577.1
1797179714%0.087%AY839636.1
1784178414%0.087%DQ068260.1
1784178414%0.087%U23573.1
1779177914%0.087%DQ068264.1
1779177914%0.087%DQ068263.1
1779177914%0.087%DQ068262.1
1779177914%0.087%AY839634.1
1766176614%0.086%U23569.1
1761176114%0.086%U23575.1
1761176114%0.086%U23571.1
1755175514%0.086%U23576.1
1745174517%0.081%AY960138.1
1703170317%0.081%AY960137.1
1676167617%0.081%AY960139.1
1523203475%0.067%DQ859058.1
1517202375%0.067%EU707555.1
1514151414%0.082%GU073158.1
1514151414%0.082%GU073145.1
1514151414%0.082%GU073144.1
1514151414%0.082%GU073136.1
1510151014%0.082%GU073166.1
1510151014%0.082%GU073143.1
1501150114%0.082%GU073152.1
1501150114%0.082%GU073141.1
1501150114%0.082%GU073137.1
1496149614%0.082%GU073156.1
1496149614%0.082%GU073153.1
1492149214%0.082%GU073135.1
1483148314%0.082%GU073163.1
1481148114%0.082%AY502949.1
1480148014%0.082%GU073159.1
1480148014%0.082%GU073149.1
1480148014%0.082%GU073140.1
1478147814%0.082%GU073161.1
1478147814%0.082%GU073148.1
1472147214%0.082%GU073142.1
1469146914%0.082%GU073146.1
1462146215%0.081%AY495561.1
1460146014%0.082%GU073164.1
1460146014%0.081%GU073131.1
1460146015%0.081%AY359908.2
1458145814%0.082%GU073157.1
1454145414%0.082%GU073147.1
1454145414%0.082%L02865.1
1452145214%0.082%GU073160.1
1452145215%0.081%AY495571.1
1452145215%0.081%AY495567.1
1451145114%0.081%GU073130.1
1451145115%0.081%AY359909.1
1449144914%0.082%GU073139.1
1449144914%0.081%AY359907.1
1445144514%0.082%GU073133.1
1445144515%0.081%AY495558.1
1445144514%0.082%AY839635.1
1445144514%0.082%U23574.1
1445144514%0.082%L02866.1
1443144314%0.082%GU073150.1
1442144214%0.082%GU073162.1
1442144214%0.081%AY495569.1
1442144215%0.081%AY495562.1
1440144015%0.081%AY495566.1
1440144014%0.081%AY495559.1
1436143614%0.082%GU073132.1
1422185475%0.066%JN226796.1
1418141814%0.082%GU073165.1
1418141814%0.081%U23580.1
1416141614%0.081%AY495573.1
1415141514%0.081%AY495570.1
1411141114%0.081%AY495568.1
1409140914%0.081%AY495572.1
1409140914%0.081%U23570.1
1406140614%0.081%U23568.1
1402140213%0.082%GU073134.1
1400140014%0.081%U23579.1
1397178775%0.066%AY632543.1
1393178475%0.066%DQ859063.1
1393139314%0.081%AY495574.1
1391139114%0.081%U23572.1
1382138213%0.082%GU073151.1
1382177375%0.066%DQ837642.1
1382138214%0.081%U23567.1
1373137314%0.081%U23566.1
1373137314%0.081%U23565.1
1319131913%0.081%GU073138.1
1279127911%0.084%U52422.1
1267126711%0.083%U52392.1
1191151463%0.066%DQ859067.1
115511556%0.098%AF369669.1
1144114411%0.081%U52398.1
1141114111%0.081%U52416.1
1126121067%0.065%DQ859062.1
1122112211%0.081%U52404.1
1117111711%0.081%U52389.1
1108110811%0.080%U52403.1
1081108111%0.080%U52410.1
1077107711%0.080%U52419.1
1068106811%0.080%U52409.1
1059105911%0.080%U52413.1
9179179%0.080%AF162449.1
9139139%0.080%AF312554.1
9139139%0.080%AF162451.1
9089089%0.080%AF162452.1
9049049%0.080%AF162450.1
87587510%0.079%AF013417.1
8078077%0.084%U52424.1
7807806%0.086%AF369673.1
7677676%0.085%AF369697.1
7627626%0.085%AF369692.1
7587586%0.085%AF369696.1
7587586%0.085%AF369695.1
7537536%0.085%AF369676.1
749154752%0.067%DQ859057.1
7497496%0.085%AY839631.1
7447446%0.085%AF369694.1
7447446%0.085%AF369675.1
7427426%0.085%JX012100.1
740131753%0.066%DQ859066.1
7407406%0.084%AF369674.1
7407406%0.084%AF369672.1
7387386%0.085%JX012103.1
7357356%0.085%JX012097.1
7357357%0.081%U52394.1
7287286%0.084%AY839633.1
7207206%0.085%JX012099.1
7177177%0.082%U52397.1
7157156%0.085%JX012098.1
7137136%0.084%AY540464.1
7087086%0.083%AY540477.1
7087086%0.083%AY540467.1
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