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13 South Korea MERS Partial S Gene Sequences Match Index


niman

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LOCUS       KT717696                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/016_05_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717696
VERSION     KT717696.1  GI:930625819
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/016_05_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="11-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00414.1"
                     /db_xref="GI:930625820"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717697                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/023_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717697
VERSION     KT717697.1  GI:930625821
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/023_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="11-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00415.1"
                     /db_xref="GI:930625822"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717698                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/024_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717698
VERSION     KT717698.1  GI:930625823
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/024_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="08-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00416.1"
                     /db_xref="GI:930625824"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717699                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/030_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717699
VERSION     KT717699.1  GI:930625825
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/030_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="08-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00417.1"
                     /db_xref="GI:930625826"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717700                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/031_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717700
VERSION     KT717700.1  GI:930625827
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/031_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="08-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00418.1"
                     /db_xref="GI:930625828"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717701                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/038_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717701
VERSION     KT717701.1  GI:930625829
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/038_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="10-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00419.1"
                     /db_xref="GI:930625830"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717702                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/054_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717702
VERSION     KT717702.1  GI:930625831
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/054_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="09-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00420.1"
                     /db_xref="GI:930625832"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717703                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/082_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717703
VERSION     KT717703.1  GI:930625833
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/082_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="10-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00421.1"
                     /db_xref="GI:930625834"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717704                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/085_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717704
VERSION     KT717704.1  GI:930625835
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/085_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="10-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00422.1"
                     /db_xref="GI:930625836"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717705                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/110_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717705
VERSION     KT717705.1  GI:930625837
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/110_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="11-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00423.1"
                     /db_xref="GI:930625838"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717706                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/122_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717706
VERSION     KT717706.1  GI:930625839
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/122_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="10-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00424.1"
                     /db_xref="GI:930625840"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717707                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/148_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717707
VERSION     KT717707.1  GI:930625841
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/148_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="15-Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00425.1"
                     /db_xref="GI:930625842"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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LOCUS       KT717708                 615 bp    RNA     linear   VRL 03-OCT-2015
DEFINITION  Middle East respiratory syndrome coronavirus isolate
            MERS-CoV/KOR/CNUH_SNU/172_06_2015 spike protein (S) gene, partial
            cds.
ACCESSION   KT717708
VERSION     KT717708.1  GI:930625843
KEYWORDS    .
SOURCE      Middle East respiratory syndrome coronavirus (MERS-CoV)
  ORGANISM  Middle East respiratory syndrome coronavirus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus;
            unclassified Betacoronavirus.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Outbreak of Middle East Respiratory Syndrome in Two Hospitals in
            South Korea
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Kim,Y.-S. and Cho,N.-H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-SEP-2015) Department of Microbiology and Immunology,
            Seoul Naitonal University College of Medicine, 103 Daehak-ro,
            Jongno-gu, Seoul, Seoul 110-799, South Korea
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Middle East respiratory syndrome coronavirus"
                     /mol_type="genomic RNA"
                     /isolate="MERS-CoV/KOR/CNUH_SNU/172_06_2015"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:1335626"
                     /country="South Korea"
                     /collection_date="Jun-2015"
                     /PCR_primers="fwd_name: vs804, fwd_seq:
                     tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq:
                     ttgagtaatgccaacaccgtt"
     gene            <1..>615
                     /gene="S"
     CDS             <1..>615
                     /gene="S"
                     /note="MERS-CoV spike protein"
                     /codon_start=1
                     /product="spike protein"
                     /protein_id="ALG00426.1"
                     /db_xref="GI:930625844"
                     /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ
                     LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV
                     SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL
                     PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL"
ORIGIN      
        1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt
       61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag
      121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc
      181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc
      241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa
      301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt
      361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa
      421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta
      481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata
      541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt
      601 attttttata ggtta
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  • KT717708.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/172_06_2015 spike protein (S) gene, partial cds
  • KT717707.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/148_06_2015 spike protein (S) gene, partial cds
  • KT717706.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/122_06_2015 spike protein (S) gene, partial cds
  • KT717705.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/110_06_2015 spike protein (S) gene, partial cds
  • KT717704.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/085_06_2015 spike protein (S) gene, partial cds
  • KT717703.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/082_06_2015 spike protein (S) gene, partial cds
  • KT717702.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/054_06_2015 spike protein (S) gene, partial cds
  • KT717701.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/038_06_2015 spike protein (S) gene, partial cds
  • KT717700.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/031_06_2015 spike protein (S) gene, partial cds
  • KT717699.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/030_06_2015 spike protein (S) gene, partial cds
  • KT717698.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/024_06_2015 spike protein (S) gene, partial cds
  • KT717697.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/023_06_2015 spike protein (S) gene, partial cds
  • KT717696.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/016_05_2015 spike protein (S) gene, partial cds
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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
11101110100%0.0100%KT036374.1
11101110100%0.0100%KT036373.1
11101110100%0.0100%KT036372.1
11101110100%0.0100%KT026456.1
11101110100%0.0100%KT026454.1
11101110100%0.0100%KT026453.1
11101110100%0.0100%KT006149.2
11041104100%0.099%KT029139.1
11041104100%0.099%KM027288.1
11011101100%0.099%KT225476.2
11011101100%0.099%KP405227.1
11011101100%0.099%KP405226.1
11011101100%0.099%KP405225.1
11011101100%0.099%KM027286.1
11011101100%0.099%KM027285.1
11011101100%0.099%KM027284.1
11011101100%0.099%KM027279.1
11011101100%0.099%KM027277.1
11011101100%0.099%KJ156864.1
11011101100%0.099%KJ156920.1
11011101100%0.099%KJ156908.1
11011101100%0.099%KF961222.1
11011101100%0.099%KF961221.1
11011101100%0.099%KF600628.1
10971097100%0.099%KJ156936.1
10971097100%0.099%KJ156934.1
10971097100%0.099%KJ156910.1
10951095100%0.099%KP719933.1
10951095100%0.099%KP719932.1
10951095100%0.099%KP719931.1
10951095100%0.099%KM210278.1
10951095100%0.099%KM210277.1
10951095100%0.099%KP209313.1
10951095100%0.099%KP209310.1
10951095100%0.099%KP209309.1
10951095100%0.099%KP209308.1
10951095100%0.099%KP209307.1
10951095100%0.099%KP209306.1
10951095100%0.099%KM027262.1
10951095100%0.099%KM027278.1
10951095100%0.099%KM015348.1
10951095100%0.099%KJ858499.1
10951095100%0.099%KJ813439.1
10951095100%0.099%KJ713299.1
10951095100%0.099%KJ156870.1
10951095100%0.099%KJ156954.1
10951095100%0.099%KJ156930.1
10951095100%0.099%KJ156939.1
10951095100%0.099%KJ156911.1
10951095100%0.099%KJ156905.1
10951095100%0.099%KJ156901.1
10951095100%0.099%KJ156876.1
10951095100%0.099%KJ156873.1
10951095100%0.099%KJ156872.1
10951095100%0.099%KJ156942.1
10951095100%0.099%KJ156874.1
10951095100%0.099%KJ156869.1
10951095100%0.099%KJ156866.1
10951095100%0.099%KF600652.1
10951095100%0.099%KF600651.1
10951095100%0.099%KF600647.1
10951095100%0.099%KF600645.1
10951095100%0.099%KF600644.1
10951095100%0.099%KF600643.1
10951095100%0.099%KF600636.1
10951095100%0.099%KF600634.1
10951095100%0.099%KF600632.1
10951095100%0.099%KF600631.1
10951095100%0.099%KF600630.1
10951095100%0.099%KF600627.1
10951095100%0.099%KF600626.1
10951095100%0.099%KF600623.1
10951095100%0.099%KF600620.1
10951095100%0.099%KF600612.1
10951095100%0.099%KF186565.1
10951095100%0.099%KF186567.1
10951095100%0.099%KF186566.1
10951095100%0.099%KF186564.1
10941094100%0.099%KJ156916.1
10921092100%0.099%KT156561.1
10921092100%0.099%KT156560.1
10921092100%0.099%KJ361503.1
10921092100%0.099%KJ361502.1
10921092100%0.099%KJ361501.1
10921092100%0.099%KJ361500.1
10921092100%0.099%KJ361499.1
10921092100%0.099%KP719930.1
10921092100%0.099%KP719929.1
10921092100%0.099%KP719928.1
10921092100%0.099%KP719927.1
10921092100%0.099%KP236092.1
10921092100%0.099%KP209312.1
10921092100%0.099%KF811036.1
10921092100%0.099%KJ650297.1
10921092100%0.099%KJ650296.1
10921092100%0.099%KJ650295.1
10921092100%0.099%KF745068.1
10901090100%0.099%KJ156945.1
10861086100%0.099%KR011266.1
10851085100%0.099%KR011265.1
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