niman Posted July 10, 2016 Report Share Posted July 10, 2016 REFERENCE 1 (bases 1 to 10538) AUTHORS Teixeira,M., Herman,B.D., Bassit,L.C. and Schinazi,R.F. TITLE Full coding sequence of the Zika Virus isolate HS-2015-BA-01 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10538) AUTHORS Teixeira,M., Herman,B.D., Bassit,L.C. and Schinazi,R.F. TITLE Direct Submission JOURNAL Submitted (08-JUL-2016) Pediatrics-Laboratory of Biochemical Pharmacology, Emory University, 1760 Haygood Dr NE Room E-450, Atlanta, GA 30322, USAVERSION KX520666.1 GI:1042859933 Link to comment Share on other sites More sharing options...
niman Posted July 10, 2016 Author Report Share Posted July 10, 2016 LOCUS KX520666 10538 bp RNA linear VRL 08-JUL-2016 DEFINITION Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds. ACCESSION KX520666 VERSION KX520666.1 GI:1042859933 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10538) AUTHORS Teixeira,M., Herman,B.D., Bassit,L.C. and Schinazi,R.F. TITLE Full coding sequence of the Zika Virus isolate HS-2015-BA-01 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10538) AUTHORS Teixeira,M., Herman,B.D., Bassit,L.C. and Schinazi,R.F. TITLE Direct Submission JOURNAL Submitted (08-JUL-2016) Pediatrics-Laboratory of Biochemical Pharmacology, Emory University, 1760 Haygood Dr NE Room E-450, Atlanta, GA 30322, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10538 /organism="Zika virus" /mol_type="genomic RNA" /isolate="HS-2015-BA-01" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil: Bahia" /collection_date="2015" /note="genotype: Asian" CDS 37..10308 /codon_start=1 /product="polyprotein" /protein_id="ANQ92019.1" /db_xref="GI:1042859934" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTRQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT VISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKGGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAALGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQMPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPHGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRPEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 ggttttattt ggatttggaa acgagagttt ctggtcatga aaaacccaaa aaagaaatcc 61 ggaggattcc ggattgtcaa tatgctaaaa cgcggagtag cccgtgtgag cccctttggg 121 ggcttgaaga ggctgccagc cggacttctg ctgggtcatg ggcccatcag gatggtcttg 181 gcgattctag cctttttgag attcacggca atcaagccat cactgggtct catcaataga 241 tggggttcag tggggaaaaa agaggctatg gaaataataa agaagttcaa gaaagatctg 301 gctgccatgc tgagaataat caatgctagg aaggagaaga agagacgagg cgcagatact 361 agtgtcggaa ttgttggcct cctgctgacc acagctatgg cagcggaggt cactagacgt 421 gggagtgcat actatatgta cttggacaga aacgatgctg gggaggccat atcttttcca 481 accacattgg ggatgaataa gtgttatata cagatcatgg atcttggaca catgtgtgat 541 gccaccatga gctatgaatg ccctatgctg gatgaggggg tggaaccaga tgacgtcgat 601 tgttggtgca acacgacgtc aacttgggtt gtgtacggaa cctgccatca caaaaaaggt 661 gaagcacgga gatctagaag agctgtgacg ctcccctccc attccactag gaagctgcaa 721 acgcggtcgc aaacctggtt ggaatcaaga gaatacacaa agcacttgat tagagtcgaa 781 aattggatat tcaggaaccc tggcttcgcg ttagcagcag ctgccatcgc ttggcttttg 841 ggaagctcaa cgcgccaaaa agtcatatac ttggtcatga tactgctgat tgccccggca 901 tacagcatca ggtgcatagg agtcagcaat agggactttg tggaaggtat gtcaggtggg 961 acttgggttg atgttgtctt ggaacatgga ggttgtgtca ccgtaatggc acaggacaaa 1021 ccgactgtcg acatagagct ggttacaaca acagtcagca acatggcgga ggtaagatcc 1081 tactgctatg aggcatcaat atcagacatg gcttcggaca gccgctgccc aacacaaggt 1141 gaagcctacc ttgacaagca atcagacact caatatgtct gcaaaagaac gttagtggac 1201 agaggctggg gaaatggatg tggacttttt ggcaaaggga gcctggtgac atgcgctaag 1261 tttgcatgct ccaagaaaat gaccgggaag agcatccagc cagagaatct ggagtaccgg 1321 ataatgctgt cagttcatgg ctcccagcac agtgggatga tcgttaatga cacaggacat 1381 gaaactgatg agaatagagc gaaggttgag ataacgccca attcaccaag agccgaagcc 1441 accctggggg gttttggaag cctaggactt gattgtgaac cgaggacagg ccttgacttt 1501 tcagatttgt attacttgac tatgaataac aagcactggt tggttcacaa ggagtggttc 1561 cacgacattc cattaccttg gcacgctggg gcagacaccg gaactccaca ctggaacaac 1621 aaagaagcac tggtagagtt caaggacgca catgccaaaa ggcaaactgt cgtggttcta 1681 gggagtcaag aaggagcagt tcacacggcc cttgctggag ctctagaggc tgagatggat 1741 ggtgcaaagg gaaggctgtc ctctggccac ttgaaatgtc gcctgaaaat ggataaactt 1801 agattgaagg gcgtgtcata ctccttgtgt accgcagcgt tcacattcac caagatcccg 1861 gctgaaacac tgcacgggac agtcacagtg gaggtacagt acgcagggac tgatggacct 1921 tgcaaggttc cagctcagat ggcggtggac atgcaaactc tgaccccagt tgggaggttg 1981 ataaccgcta accccgtaat cactgaaagc actgagaact ctaagatgat gctggaactt 2041 gatccaccat ttggggactc ctacattgtc ataggagtcg gggagaagaa gatcacccac 2101 cactggcaca ggagtggcag caccattgga aaagcatttg aagccactgt gagaggtgcc 2161 aagagaatgg cagtcttggg agacacagcc tgggactttg gatcagttgg aggcgctctc 2221 aactcattgg gcaagggcat ccatcaaatt tttggagcag ctttcaaatc attgtttgga 2281 ggaatgtcct ggttctcaca aattctcatt ggaacgttgc tgatgtggtt gggtctgaac 2341 acaaagaatg gatctatttc ccttatgtgc ttggccttag ggggagtgtt gatcttctta 2401 tccacagccg tctctgctga tgtggggtgc tcggtggact tctcaaagaa ggagacgaga 2461 tgcggtacag gggtgttcgt ctataacgac gttgaagcct ggagggacag gtacaagtac 2521 catcctgact ccccccgtag attggcagca gcagtcaagc aagcctggga agatggtatc 2581 tgcgggatct cctctgtttc aagaatggaa aacatcatgt ggagatcagt agaaggggag 2641 ctcaacgcaa tcctggaaga gaatggagtt caactgacgg tcgttgtggg atctgtaaaa 2701 aaccccatgt ggagaggtcc acagagattg cccgtgcctg tgaacgagct gccccacggc 2761 tggaaggctt gggggaaatc gtacttcgtc agagcagcaa agacaaataa cagctttgtc 2821 gtggatggtg acacactgaa ggaatgccca ctcaaacata gagcatggaa cagctttctt 2881 gtggaggatc atgggttcgg ggtatttcac actagtgtct ggctcaaggt tagagaagat 2941 tattcattag agtgtgatcc agccgttatt ggaacagctg ttaagggaaa ggaggctgta 3001 cacagtgatc taggctactg gattgagagt gagaagaatg acacatggag gctgaagagg 3061 gcccatctga tcgagatgaa aacatgtgaa tggccaaagt cccacacatt gtggacagat 3121 ggaatagaag agagtgatct gatcataccc aagtctttag ctgggccact cagccatcac 3181 aataccagag agggctacag gacccaaatg aaagggccat ggcacagtga agagcttgaa 3241 attcggtttg aggaatgccc aggcactaag gtccacgtgg aggaaacatg tggaacaaga 3301 ggaccatctc tgagatcaac cactgcaagc ggaagggtga tcgaggaatg gtgctgcagg 3361 gagtgcacaa tgcccccact gtcgttccgg gctaaagatg gctgttggta tggaatggag 3421 ataaggccca ggaaagaacc agaaagcaac ttagtaaggt caatggtgac tgcaggatca 3481 actgatcaca tggatcactt ctcccttgga gtgcttgtga ttctgctcat ggtgcaggaa 3541 gggctgaaga agagaatgac cacaaagatc atcataagca catcaatggc agtgctggta 3601 gctatgatcc tgggaggatt ttcaatgagt gacctggcta agcttgcaat tttgatgggt 3661 gccaccttcg cggaaatgaa cactggagga gatgtagctc atctggcgct gatagcggca 3721 ttcaaagtta gaccagcgtt gctggtatct ttcatcttca gagctaattg gacaccccgt 3781 gaaagcatgc tgctggcctt ggcctcgtgt cttttgcaaa ctgtgatctc cgccttggaa 3841 ggcgacctga tggttctcat caatggtttt gctttggcct ggttggcaat acgagcgatg 3901 gttgttccac gcactgataa catcaccttg gcaatcttgg ctgctctgac accactggcc 3961 cggggcacac tgcttgtggc gtggagagca ggccttgcta cttgcggggg gtttatgctc 4021 ctctctctga agggaaaagg cagtgtgaag aagaacttac catttgtcat ggccctggga 4081 ctaaccgctg tgaggctggt cgaccccatc aacgtggtgg gactgctgtt gctcacaagg 4141 agtgggaagc ggagctggcc ccccagcgaa gtactcacag ctgttggcct gatatgcgca 4201 ttggctggag ggttcgccaa ggcagatata gagatggctg ggcccatggc cgcggtcggt 4261 ctgctaattg tcagttacgt ggtctcagga aagagtgtgg acatgtacat tgaaagagca 4321 ggtgacatca catgggaaaa agatgcggaa gtcactggaa acagtccccg gctcgatgtg 4381 gcgctagatg agagtggtga tttctccctg gtggaggatg acggtccccc catgagagag 4441 atcatactca aggtggtcct gatgaccatc tgtggcatga acccaatagc catacccttt 4501 gcagctggag cgtggtacgt atacgtgaag actggaaaaa ggagtggtgc tctatgggat 4561 gtgcctgctc ccaaggaagt aaaaaagggg gagaccacag atggagtgta cagagtaatg 4621 actcgtagac tgctaggttc aacacaagtt ggagtgggag ttatgcaaga gggggtcttt 4681 cacactatgt ggcacgtcac aaaaggatcc gcgctgagaa gcggtgaagg gagacttgat 4741 ccatactggg gagatgtcaa gcaggatctg gtgtcatact gtggtccatg gaagctagat 4801 gccgcctggg acgggcacag cgaggtgcag ctcttggccg tgccccccgg agagagagcg 4861 aggaacatcc agactctgcc cggaatattt aagacaaagg gtggggacat tggagcggtt 4921 gcgctggatt acccagcagg aacttcagga tctccaatcc tagacaagtg tgggagagtg 4981 ataggacttt atggcaatgg ggtcgtgatc aaaaatggga gttatgttag tgccatcacc 5041 caagggagga gggaggaaga gactcctgtt gagtgcttcg agccttcgat gctgaagaag 5101 aagcagctaa ctgtcttaga cttgcatcct ggagctggga aaaccaggag agttcttcct 5161 gaaatagtcc gtgaagccat aaaaacaaga ctccgtactg tgatcttagc tccaaccagg 5221 gttgtcgctg ctgaaatgga ggaagccctt agagggcttc cagtgcgtta tatgacaaca 5281 gcagtcaatg tcacccactc tggaacagaa atcgtcgact taatgtgcca tgccaccttc 5341 acttcacgtc tactacagcc aatcagagtc cccaattata atctgtatat tatggatgag 5401 gcccacttca cagatccctc aagtatagca gcaagaggat acatttcaac aagggttgag 5461 atgggcgagg cggctgccat cttcatgacc gccacgccac caggaacccg tgacgcattt 5521 ccggactcca actcaccaat tatggacacc gaagtggaag tcccagagag agcctggagc 5581 tcaggctttg attgggtgac ggatcattct ggaaaaacag tttggtttgt tccaagcgtg 5641 aggaacggca atgagatcgc agcttgtctg acaaaggctg gaaaacgggt catacagctc 5701 agcagaaaga cttttgagac agagttccag aaaacaaaac atcaagagtg ggactttgtc 5761 gtgacaactg acatttcaga gatgggcgcc aactttaaag ctgaccgtgt catagattcc 5821 aggagatgcc taaagccggt catacttgat ggcgagagag tcattctggc tggacccatg 5881 cctgtcacac atgccagcgc tgcccagagg agggggcgca taggcaggaa tcccaacaaa 5941 cctggagatg agtatctgta tggaggtggg tgcgcagaga ctgacgaaga ccatgcacac 6001 tggcttgaag caagaatgct ccttgacaat atttacctcc aagatggcct catagcctcg 6061 ctctatcgac ctgaggccga caaagtagca gccattgagg gagagttcaa gcttaggacg 6121 gagcaaagga agacctttgt ggaactcatg aaaagaggag atcttcctgt ttggctggcc 6181 tatcaggttg catctgccgg aataacctac acagatagaa gatggtgctt tgatggcacg 6241 accaacaaca ccataatgga agacagtgtg ccggcagagg tgtggaccag acacggagag 6301 aaaagagtgc tcaaaccgag gtggatggat gccagagttt gttcagatca tgcggccctg 6361 aagtcattca aggagtttgc cgctgggaaa agaggagcgg ctcttggagt gatggaagcc 6421 ctgggaacac tgccaggaca catgacagag agattccagg aagccattga caacctcgct 6481 gtgctcatgc gggcagagac tggaagcagg ccttacaaag ccgcggcggc ccaaatgccg 6541 gagaccctag agaccattat gcttttgggg ttgctaggaa cagtctcgct gggaatcttt 6601 ttcgtcttga tgaggaacaa gggcataggg aagatgggct ttggaatggt gactcttggg 6661 gccagcgcat ggctcatgtg gctctcggaa attgagccag ccagaattgc atgtgtcctc 6721 attgttgtgt tcctattgct ggtggtgctc atacctgagc cagaaaagca aagatctccc 6781 caggacaacc aaatggcaat catcatcatg gtagcagtag gtcttctggg cttgattacc 6841 gccaatgaac tcggatggtt ggagagaaca aagagtgacc taagccatct aatgggaagg 6901 agagaggagg gggcaaccat aggattctca atggacattg acctgcggcc agcctcagct 6961 tgggccatct atgctgcctt gacaactttc attaccccag ccgtccaaca tgcagtgacc 7021 acttcataca acaactactc cttaatggcg atggccacgc aagctggagt gttgtttggt 7081 atgggcaaag ggatgccatt ctacgcatgg gactttggag tcccgctgct aatgataggt 7141 tgctactcac aattaacacc cctgacccta atagtggcca tcattttgct cgtggcgcac 7201 tacatgtact tgatcccagg gctgcaggca gcagctgcgc gtgctgccca gaagagaacg 7261 gcagctggca tcatgaagaa ccctgttgtg gatggaatag tggtgactga cattgacaca 7321 atgacaattg acccccaagt ggagaaaaag atgggacagg tgctactcat agcagtagcc 7381 gtctccagcg ccatactgtc gcggaccgcc tgggggtggg gggaggctgg ggctctgatc 7441 acagccgcaa cttccacttt gtgggaaggc tctccgaaca agtactggaa ctcctctaca 7501 gccacttcac tgtgtaacat ttttagggga agttacttgg ctggagcttc tctaatctac 7561 acagtaacaa gaaacgctgg cttggtcaag agacgtgggg gtggaacagg agagaccctg 7621 ggagagaaat ggaaggcccg cttgaaccag atgtcggccc tggagttcta ctcctacaaa 7681 aagtcaggca tcaccgaggt gtgcagagaa gaggcccgcc gcgccctcaa ggacggtgtg 7741 gcaacgggag gccatgctgt gtcccgagga agtgcaaagc tgagatggtt ggtggagcgg 7801 ggatacctgc agccccatgg aaaggtcatt gatcttggat gtggcagagg gggctggagt 7861 tactacgccg ccaccatccg caaagttcaa gaagtgaaag gatacacaaa aggaggccct 7921 ggtcatgaag aacccgtgtt ggtgcaaagc tatgggtgga acatagtccg tcttaagagt 7981 ggggtggacg tctttcatat ggcggctgag ccgtgtgaca cgttgctgtg tgacataggt 8041 gagtcatcat ctagtcctga agtggaagaa gcacggacgc tcagagttct ctccatggtg 8101 ggggattggc ttgaaaaaag accaggagcc ttttgtataa aagtgttgtg cccatacacc 8161 agcactatga tggaaaccct ggagcgactg cagcgtaggt atgggggagg actggtcaga 8221 gtgccactct cccgcaactc tacacatgag atgtactggg tctctggagc gaaaagcaac 8281 accataaaaa gtgtgtccac cacgagccag ctcctcttgg ggcgcatgga cgggcctagg 8341 aggccagtga aatatgagga ggatgtgaat ctcggctctg gcacgcgggc tgtggtaagc 8401 tgcgctgaag ctcccaacat gaagatcatt ggtaaccgca ttgaaaggat ccgcagtgag 8461 cacgcggaaa cgtggttctt tgacgagaac cacccatata ggacatgggc ttaccatgga 8521 agctatgagg cccccacaca agggtcagcg tcctctctag taaacggggt tgtcaggctc 8581 ctgtcaaaac cctgggatgt ggtgactgga gtcacaggaa tagccatgac cgacaccaca 8641 ccgtatggtc agcaaagagt tttcaaggaa aaagtggaca ctagggtgcc agacccccaa 8701 gaaggcactc gtcaggttat gagcatggtc tcttcctggt tgtggaaaga gctaggcaaa 8761 cacaaacggc cacgagtctg taccaaagaa gagttcatca acaaggttcg tagcaatgca 8821 gcactagggg caatatttga agaggaaaaa gagtggaaga ctgcagtgga agctgtgaac 8881 gatccaaggt tctgggctct agtggacaag gaaagagagc accacctgag aggagagtgc 8941 cagagttgtg tgtacaacat gatgggaaaa agagaaaaga aacaagggga atttggaaag 9001 gccaagggca gccgcgccat ctggtatatg tggctagggg ctagatttct agagttcgaa 9061 gcccttggat tcttgaacga ggatcactgg atggggagag agaactcagg aggtggtgtt 9121 gaagggctgg gattacaaag actcggatat gtcctagaag agatgagtcg cataccagga 9181 ggaaggatgt atgcagatga cactgctggc tgggacaccc gcatcagcag gtttgatctg 9241 gagaatgaag ctctaatcac caaccaaatg gagaaagggc acagggcctt ggcattggcc 9301 ataatcaagt acacatacca aaacaaagtg gtaaaggtcc ttagaccagc tgaaaaaggg 9361 aaaacagtta tggacattat ttcgagacaa gaccaaaggg ggagcggaca agttgtcact 9421 tacgctctta acacatttac caacctagtg gtgcaactca ttcggaatat ggaggctgag 9481 gaagttctcg agatgcaaga cttgtggctg ctgcggaggc cagagaaagt gaccaactgg 9541 ttgcagagca acggatggga taggctcaaa cgaatggcag tcagtggaga tgattgcgtt 9601 gtgaagccaa ttgatgatag gtttgcacat gccctcaggt tcttgaatga tatgggaaaa 9661 gttaggaagg acacacaaga gtggaaaccc tcaactggat gggacaactg ggaagaagtt 9721 ccgttttgct cccaccactt caacaagctc catctcaagg acgggaggtc cattgtggtt 9781 ccctgccgcc accaagatga actgattggc cgggcccgcg tctctccagg ggcgggatgg 9841 agcatccggg agactgcttg cctagcaaaa tcatatgcgc aaatgtggca gctcctttat 9901 ttccacagaa gggacctccg actgatggcc aatgccattt gctcatctgt gccagttgac 9961 tgggttccaa ctgggagaac tacctggtca atccatggaa agggagaatg gatgaccact 10021 gaagacatgc ttgtggtgtg gaacagagtg tggattgagg agaacgacca catggaagac 10081 aagaccccag ttacgaaatg gacagacatt ccctatttgg gaaaaaggga agacttgtgg 10141 tgtggatctc tcatagggca cagaccgcgc accacctggg ctgagaacat taaaaacaca 10201 gtcaacatgg tgcgcaggat cataggtgat gaagaaaagt acatggacta cctatccacc 10261 caagttcgct acttgggtga agaagggtct acacctggag tgctgtaagc accagtctta 10321 atgttgtcag gcctgctagt cagccacagc ttggggaaag ctgtgcagcc tgtgaccccc 10381 ccaggagaag ctgggaaacc aagcctatag tcaggccgag aacgccatgg cacggaagaa 10441 gccatgctgc ctgtgagccc ctcagaggac actgagtcaa aaaaccccac gcgcttggag 10501 gcgcaggatg ggaaaagaag gtggcgacct tccccacc Link to comment Share on other sites More sharing options...
niman Posted July 10, 2016 Author Report Share Posted July 10, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX520666.1|Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds1852518525100%0.0100%KX520666.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1850718507100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome184201842099%0.099%KU940224.1Select seq gb|KX369547.1|Zika virus strain PF13/251013-18, complete genome1838418384100%0.099%KX369547.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1838418384100%0.099%KU509998.3Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1838118381100%0.099%KJ776791.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome1837518375100%0.099%KX280026.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1837218372100%0.099%KU991811.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1837218372100%0.099%KU729218.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1837218372100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1836618366100%0.099%KX051563.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1836318363100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1836318363100%0.099%KU365779.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome1835718357100%0.099%KX262887.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1835718357100%0.099%KX197192.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1834818348100%0.099%KX198135.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1834818348100%0.099%KU926309.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1834818348100%0.099%KU365780.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1834518345100%0.099%KU647676.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1834518345100%0.099%KU365777.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds1833918339100%0.099%KU758877.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome1833918339100%0.099%KX247646.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1833918339100%0.099%KX156776.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1833918339100%0.099%KU501217.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1833618336100%0.099%KX156774.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1833618336100%0.099%KU729217.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183361833699%0.099%KU497555.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1833618336100%0.099%KU527068.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833618336100%0.099%KU501216.1Select seq gb|KX446951.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome1833018330100%0.099%KX446951.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds1833018330100%0.099%KU820897.3Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds1833018330100%0.099%KX247632.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1833018330100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1833018330100%0.099%KX087102.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1833018330100%0.099%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1833018330100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1833018330100%0.099%KU312312.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1832718327100%0.099%KX087101.2Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1832718327100%0.099%KU922960.1Select seq gb|KX377337.1|Zika virus strain PRVABC-59, complete genome1832118321100%0.099%KX377337.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1832118321100%0.099%KU937936.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1832118321100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1832118321100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1832118321100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1832118321100%0.099%KU853012.1Select seq gb|KX446950.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome1831818318100%0.099%KX446950.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1831818318100%0.099%KU870645.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1830318303100%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1830018300100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1830018300100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1829418294100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1829418294100%0.099%KU761564.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1829118291100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1828218282100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1828218282100%0.099%KU963796.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome1827618276100%0.099%KX253996.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1827618276100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1827618276100%0.099%KU820899.2Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds1827318273100%0.099%KU866423.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1813718137100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1803818038100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1773217732100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177301773099%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176851768598%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1757617576100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1742917429100%0.098%KU681082.3Select seq gb|KX377336.1|Zika virus strain P6-740, complete genome1641516415100%0.095%KX377336.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164151641599%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1330413304100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132991329999%0.089%HQ234498.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1329513295100%0.089%KF383119.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1329313293100%0.089%KF383115.1Select seq gb|KX377335.1|Zika virus strain MR-766, complete genome1329013290100%0.089%KX377335.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1328113281100%0.089%LC002520.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1327913279100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1327913279100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1327213272100%0.089%KF268950.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1326813268100%0.089%KU955595.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1326513265100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1326513265100%0.089%KU955594.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1325913259100%0.089%KU955592.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1325713257100%0.089%DQ859059.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1324513733100%0.089%KX198134.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1324113241100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1323413234100%0.089%KF383116.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1322313223100%0.089%AY632535.2Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132091320999%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1316413164100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1314413251100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131441314499%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1296313031100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128911289197%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108621086297%0.084%KF383120.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds5025502527%0.099%KX212103.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds4991499127%0.099%KU758875.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds4989498927%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds4982498227%0.099%KU758870.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds4980498027%0.099%KU758873.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4980498027%0.099%KU312314.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds4967496727%0.099%KU758872.1 Link to comment Share on other sites More sharing options...
niman Posted July 11, 2016 Author Report Share Posted July 11, 2016 Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds10,538 bp linear RNAAccession: KX520666.1 GI: 1042859933GenBankFASTAGraphics Link to comment Share on other sites More sharing options...
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