niman Posted August 29, 2016 Report Share Posted August 29, 2016 LOCUS KX766028 10680 bp RNA linear VRL 26-AUG-2016 DEFINITION Zika virus isolate R114916, complete genome. ACCESSION KX766028 VERSION KX766028.1 GI:1059853342 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10680) AUTHORS Lanciotti,R.S. TITLE Direct Submission JOURNAL Submitted (23-AUG-2016) Diagnostic & Reference Laboratory, Arbovirus Diseases Branch, Centers for Disease Control & Prevention, 3150 Rampart Road, Fort Collins, CO 80521, USA COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 7 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10680 /organism="Zika virus" /mol_type="genomic RNA" /isolate="R114916" /host="Homo sapiens" /db_xref="taxon:64320" /country="Dominican Republic" /collection_date="06-Jun-2016" Link to comment Share on other sites More sharing options...
niman Posted August 29, 2016 Author Report Share Posted August 29, 2016 LOCUS KX766028 10680 bp RNA linear VRL 26-AUG-2016 DEFINITION Zika virus isolate R114916, complete genome. ACCESSION KX766028 VERSION KX766028.1 GI:1059853342 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10680) AUTHORS Lanciotti,R.S. TITLE Direct Submission JOURNAL Submitted (23-AUG-2016) Diagnostic & Reference Laboratory, Arbovirus Diseases Branch, Centers for Disease Control & Prevention, 3150 Rampart Road, Fort Collins, CO 80521, USA COMMENT ##Assembly-Data-START## Assembly Method :: CLC Genomics Workbench v. 7 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10680 /organism="Zika virus" /mol_type="genomic RNA" /isolate="R114916" /host="Homo sapiens" /db_xref="taxon:64320" /country="Dominican Republic" /collection_date="06-Jun-2016" CDS 103..10374 /note="Cap-prM/M-E-NS1-NS2a-NS2b-NS3-NS4a-NS4b-NS5" /codon_start=1 /product="polyprotein" /protein_id="AOG18295.1" /db_xref="GI:1059853343" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGTDTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAVRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVASCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 ttgattgycg tgaatcagac tgcgacagtt cgagtttgaa gcgaaagcta gcaacagtat 61 caacaggttt tattttggat ttggaaacga gagtttctgg tcatgaaaaa cccaaaaaag 121 aaatccggag gattccggat tgtcaatatg ctaaaacgcg gagtagcccg tgtgagcccc 181 tttgggggct tgaagaggct gccagccgga cttctgctgg gtcatgggcc catcaggatg 241 gtcttggcga ttctagcctt tttgagattc acggcaatca agccatcact gggtctcatc 301 aatagatggg gttcagtggg gaaaaaagag gctatggaaa taataaagaa gttcaagaaa 361 gatctggctg ccatgctgag aataatcaat gctaggaagg agaagaagag acgaggcaca 421 gatactagtg tcggaattgt tggcctcctg ctgaccacag ctatggcagc ggaggtcact 481 agacgtggga gtgcatacta tatgtacttg gacagaaacg atgctgggga ggccatatct 541 tttccaacca cattggggat gaataagtgt tatatacaga tcatggatct tggacacatg 601 tgtgatgcca ccatgagcta tgaatgccct atgctggatg agggggtgga accagatgac 661 gtcgattgtt ggtgcaacac gacgtcaact tgggttgtgt acggaacctg ccatcacaaa 721 aaaggtgaag cacggagatc tagaagagct gtgacgctcc cttcccattc cactaggaag 781 ctgcaaacgc ggtcgcaaac ctggttggaa tcaagagaat acacaaagca cttgattaga 841 gtcgaaaatt ggatattcag gaaccctggc ttcgcgttag cagcagctgc catcgcttgg 901 cttttgggaa gctcaacgag ccaaaaagtc atatacttgg tcatgatact gctgattgcc 961 ccggcataca gcatcaggtg cataggagtc agcaataggg actttgtgga aggtatgtca 1021 ggtgggactt gggttgatgt tgtcttggaa catggaggtt gtgtcaccgt aatggcacag 1081 gacaaaccga ctgtcgacat agagctggtt acaacaacag tcagcaacat ggcggaggta 1141 agatcctact gctatgaggc atcaatatca gacatggctt cggacagccg ctgcccaaca 1201 caaggtgaag cctaccttga caagcaatca gacactcaat atgtctgcaa aagaacgtta 1261 gtggacagag gctggggaaa tggatgtgga ctttttggca aagggagcct ggtgacatgc 1321 gctaagtttg catgctccaa gaaaatgacc gggaagagca tccagccaga gaatctggag 1381 taccggataa tgctgtcagt tcatggctcc cagcacagtg ggatgatcgt taatgacaca 1441 ggacatgaaa ctgatgagaa tagagcgaar gttgagataa cgcccaattc accaagagcc 1501 gaagccaccc tggggggttt tggaagccta ggacttgatt gtgaaccgag gacaggcctt 1561 gacttttcag atttgtatta cttgactatg aataacaagc actggttggt tcacaaggag 1621 tggttccacg acattccatt accttggcac gctggggcag acaccggaac tccacactgg 1681 aacaacaaag aagcactggt agagttcaag gacgcacatg ccaaaaggca aactgtcgtg 1741 gttctaggga gtcaagaagg agcagttcac acggcccttg ctggagctct ggaggctgag 1801 atggatggag caaagggaag gctgtcctct ggccacttga aatgtcgcct gaaaatggat 1861 aaacttagat tgaagggcgt gtcatactcc ttgtgtactg cagcgttcac attcaccaag 1921 atcccggctg aaacactgca cgggacagtc acagtggagg tacagtacgc agggacagat 1981 ggaccttgca aggttccagc tcagatggcg gtggacatgc aaactctgac cccagttggg 2041 aggttgataa ccgctaaccc cgtaatcact gaaagcactg agaactctaa gatgatgctg 2101 gaacttgatc caccatttgg ggactcttac attgtcatag gagtcgggga gaagaagatc 2161 acccaccact ggcacaggag tggcagcacc attggaaaag catttgaagc cactgtgaga 2221 ggtgccaaga gaatggcagt cttgggagac acagcctggg actttggatc agttggaggc 2281 gctctcaact cattgggcaa gggcatccat caaatttttg gagcagcttt caaatcattg 2341 tttggaggaa tgtcctggtt ctcacaaatt ctcattggaa cgttgctgat gtggttgggt 2401 ctgaacacaa agaatggatc tatttccctt atgtgcttgg ccttaggggg agtgttgatc 2461 ttcttatcca cagccgtctc tgctgatgtg gggtgctcgg tggacttctc aaagaaggag 2521 acgagatgcg gtacaggggt gtttgtctat aacgacgttg aagcctggag ggacaggtac 2581 aagtaccatc ctgactcccc ccgtagattg gcagcagcag tcaagcaagc ctgggaagat 2641 ggtatctgcg ggatctcctc tgtttcaaga atggaaaaca tcatgtggag atcagtagaa 2701 ggggagctca acgcaatcct ggaagagaat ggagttcaac tgacggtcgt tgtgggatct 2761 gtaaaaaacc ccatgtggag aggtccacag agattgcccg tgcctgtgaa cgagctgccc 2821 cacggctgga aggcttgggg gaaatcgtac ttcgtcagag cagcaaagac aaataacagc 2881 tttgtcgtgg atggtgacac actgaaggaa tgcccactca aacatagagc atggaacagc 2941 tttcttgtgg aggatcatgg gttcggggta tttcacacta gtgtctggct caaggttaga 3001 gaagattatt cattagagtg tgatccagcc gttattggaa cagctgttaa gggaaaggag 3061 gctgtacaca gtgatctagg ctactggatt gagagtgaga agaatgacac atggaggctg 3121 aagagggccc atctgatcga gatgaaaaca tgtgaatggc caaagtccca cacattgtgg 3181 acagatggaa tagaagagag tgatctgatc atacccaagt ctttagctgg gccactcagc 3241 catcacaaca ccagagaggg ctacaggacc caaatgaaag ggccatggca cagtgaagag 3301 cttgaaattc ggtttgagga atgcccaggc actaaggtcc acgtggagga aacatgtgga 3361 acaagaggac catctctgag atcaaccact gcaagcggaa gggtgatcga ggaatggtgc 3421 tgcagggagt gcacaatgcc cccactgtcg ttccgggcta aagatggctg ttggtatgga 3481 atggagataa ggcccaggaa agaaccagaa agcaacttag taaggtcaat ggtgactgca 3541 ggatcaactg atcacatgga ccacttctcc cttggagtgc ttgtgatcct gctcatggtg 3601 caggaagggc tgaagaagag aatgaccaca aagatcatca taagcacatc aatggcagtg 3661 ctggtagcta tgatcctggg aggattttca atgagtgacc tggctaagct tgcaattttg 3721 atgggtgcca ccttcgcgga aatgaacact ggaggagatg tagctcatct ggcgctgata 3781 gcggcattca aagtcagacc agcgttgctg gtatccttca tcttcagagc taattggaca 3841 ccccgtgaaa gcatgctgct ggccttggcc tcgtgtcttt tgcaaactgc gatctccgcc 3901 ttggaaggcg acctgatggt tctcatcaat ggttttgctt tggcctggtt ggcagtacga 3961 gcgatggttg ttccacgcac tgataacatc accttagcaa tcctggctgc tctgacacca 4021 ctggcccggg gcacactgct tgtggcgtgg agagcaggcc ttgccacttg cggggggttt 4081 atgctcctct ctctgaaggg aaaaggcagt gtgaagaaga acttaccatt tgtcatggcc 4141 ctgggactaa ccgctgtgag gctggtcgac cccatcaacg tggtgggact gctgctgctc 4201 acaaggagtg ggaagcggag ctggccccct agcgaagtac tcacagctgt tggcctgata 4261 tgcgcattgg ctggagggtt cgccaaggca gatatagaga tggctgggcc catggccgcg 4321 gtcggtctgc taattgtcag ttacgtggtc tcaggaaaga gtgtggacat gtacattgaa 4381 agagcaggtg acatcacatg ggaaaaagat gcggaagtca ctggaaacag tccccggctc 4441 gatgtggcgc tagatgagag tggtgatttc tccctggtgg aggatgacgg tccccccatg 4501 agagagatca tactcaaggt ggtcctgatg accatctgtg gcatgaaccc aatagccata 4561 ccctttgcag ctggagcgtg gtacgtatac gtgaagactg gaaaaaggag tggtgctcta 4621 tgggatgtgc ctgctcccaa ggaagtaaaa aagggggaga ccacagatgg agtgtacaga 4681 gtaatgactc gcagactgct aggttcaaca caagttggag tgggagttat gcaagagggg 4741 gtctttcaca ctatgtggca cgtcacaaaa ggatccgcgc tgagaagcgg tgaagggaga 4801 cttgatccat actggggaga tgtcaagcag gatctggtgt catactgtgg tccatggaag 4861 ctagatgccg cctgggacgg gcacagcgag gtgcagctct tggccgtgcc ccccggagag 4921 agagcgagga acatccagac tctgcccgga atatttaaga caaaggatgg ggacattgga 4981 gcggttgcgc tggattaccc agcaggaact tcaggatctc caatcctaga caagtgtggg 5041 agagtgatag gactttatgg caatggggtc gtgatcaaaa atgggagtta tgttagtgcc 5101 atcacccaag ggaggaggga ggaagagact cctgttgagt gcttcgagcc ttcgatgctg 5161 aagaagaagc agctaactgt cttagacttg catcctggag ctgggaaaac caggagagtt 5221 cttcctgaaa tagtccgtga agccataaaa acaagactcc gtactgtgat cttagctcca 5281 accagggttg tcgctgctga aatggaggag gcccttagag ggcttccagt gcgttatatg 5341 acaacagcag tcaatgtcac ccactctgga acagaaatcg tcgacttaat gtgccatgcc 5401 accttcactt cacgtctact acagccaatt agagtcccca actataatct gtatattatg 5461 gatgaggccc acttcacaga tccctcaagt atagcagcaa gaggatacat ttcaacaagg 5521 gttgagatgg gcgaggcggc tgccatcttc atgaccgcca cgccaccagg aacccgtgac 5581 gcatttccgg actccaactc accaattatg gacaccgaag tggaagtccc agagagagcc 5641 tggagctcag gctttgattg ggtgacggat cattctggaa aaacagtttg gtttgttcca 5701 agcgtgagga acggcaatga gatcgcagct tgtctgacaa aggctggaaa acgggtcata 5761 cagctcagca gaaagacttt tgagacagag ttccagaaaa caaaacatca agagtgggac 5821 tttgtcgtga caactgacat ttcagagatg ggcgccaact ttaaagctga ccgtgtcata 5881 gattccagga gatgcctaaa gccggtcata cttgatggcg agagagtcat tctggctgga 5941 cccatgcctg tcacacatgc cagcgctgcc cagaggaggg ggcgcatagg caggaatccc 6001 aacaaacctg gagatgagta tctgtatgga ggtgggtgcg cagagactga cgaagaccat 6061 gcacactggc ttgaagcaag aatgctcctt gacaatattt acctccaaga tggcctcata 6121 gcctcgctct atcgacctga ggccgacaaa gtagcagcca ttgagggaga gttcaagctt 6181 aggacggagc aaaggaagac ctttgtggaa ctcatgaaaa gaggagatct tcctgtttgg 6241 ctggcctatc aggttgcatc tgccggaata acctacacag atagaagatg gtgctttgat 6301 ggcacgacca acaacaccat aatggaagac agtgtgccgg cagaggtgtg gaccagacat 6361 ggagagaaaa gagtgctcaa accgaggtgg atggacgcca gagtttgttc agatcatgcg 6421 gccctgaagt cattcaagga gtttgccgct gggaaaagag gagcggcttt tggagtgatg 6481 gaagccctgg gaacactgcc aggacacatg acagagagat tccaggaagc cattgacaac 6541 ctcgctgtgc tcatgcgggc agagactgga agcaggcctt acaaagccgc ggcagcccaa 6601 ttgccggaga ccctagagac cattatgctt ttggggttgc tgggaacagt ctcgctggga 6661 atcttcttcg tcttgatgag gaacaagggc atagggaaga tgggctttgg aatggtgact 6721 cttggggcca gcgcatggct catgtggctc tcggaaattg agccagccag aattgcatgt 6781 gtcctcattg ttgtgttcct attgctggtg gtgctcatac ctgagccaga aaagcaaaga 6841 tctccccagg acaaccaaat ggcaatcatc atcatggtag cagtaggtct tctgggcttg 6901 attaccgcca atgaactcgg atggttggag agaacaaaga gtgacctaag ccatctaatg 6961 ggaaggagag aggagggggc aaccatagga ttctcaatgg acattgacct gcggccagcc 7021 tcagcttggg ccatctatgc tgccttgaca actttcatta ccccagccgt ccaacatgca 7081 gtgaccacct catacaacaa ctactcctta atggcgatgg ccacgcaagc tggagtgttg 7141 tttggtatgg gcaaagggat gccattctac gcatgggact ttggagtccc gctgctaatg 7201 ataggttgct actcacaatt aacacccctg accctaatag tggccatcat tttgctcgtg 7261 gcgcactaca tgtacttgat cccagggctg caggcagcag ctgcgcgtgc tgcccagaag 7321 agaacggcag ctggcatcat gaagaatcct gttgtggatg gaatagtggt gactgacatt 7381 gacacaatga caattgaccc ccaagtggag aaaaagatgg gacaggtgct actcatagca 7441 gtagccgtct ccagcgccat actgtcgcgg accgcctggg ggtgggggga ggctggggcc 7501 ctgatcacag ccgcaacttc cactttgtgg gaaggctctc cgaacaagta ctggaactcc 7561 tctacagcca cttcactgtg taacattttt aggggaagtt acttggctgg agcttctcta 7621 atctacacag taacaagaaa cgctggcttg gtcaagagac gtgggggtgg aacaggagag 7681 accctgggag agaaatggaa ggcccgcttg aaccagatgt cggccctgga gttctactcc 7741 tacaaaaagt caggcatcac cgaggtgtgc agagaagagg cccgccgcgc cctcaaggac 7801 ggtgtggcaa cgggaggcca tgctgtgtcc cgaggaagtg caaagctgag atggttggtg 7861 gagcggggat acctgcagcc ctatggaaag gtcattgatc ttggatgtgg cagagggggc 7921 tggagttact acgccgccac catccgcaaa gttcaagaag tgaaaggata cacaaaagga 7981 ggccctggtc atgaagaacc cgtgttggtg caaagctatg ggtggaacat agtccgtctt 8041 aagagtgggg tggacgtctt tcatatggcg gctgagccgt gtgacacgtt gctgtgtgac 8101 ataggtgagt catcatctag tcctgaagtg gaagaagcac ggacgctcag agtcctctcc 8161 atggtggggg attggcttga aaaaagacca ggagcctttt gcataaaagt gttgtgccca 8221 tacaccagca ctatgatgga aaccctggag cgactgcagc gtaggtatgg gggaggactg 8281 gtcagagtgc cactctcccg caactctaca catgagatgt actgggtctc tggagcgaaa 8341 agcaacacca taaaaagtgt gtccaccacg agccagctcc tcttggggcg catggacggg 8401 cctaggaggc cagtgaaata tgaggaggat gtgaatctcg gctctggcac gcgggctgtg 8461 gcaagctgcg ctgaagctcc caacatgaag atcattggta accgcattga aaggatccgc 8521 agtgagcacg cggaaacgtg gttctttgac gagaaccacc catataggac atgggcttac 8581 catggaagct atgaggcccc cacacaaggg tcagcgtcct ctctaataaa cggggttgtc 8641 aggctcctgt caaaaccctg ggatgtggtg actggagtca caggaatagc catgaccgac 8701 accacaccgt atggtcagca aagagttttc aaggaaaaag tggacactag ggtgccagac 8761 ccccaagaag gcactcgtca ggttatgagc atggtctctt cctggttgtg gaaagagcta 8821 ggcaaacaca aacggccacg agtctgtacc aaagaagagt tcatcaacaa ggttcgtagc 8881 aatgcagcat taggggcaat atttgaagag gaaaaagagt ggaagactgc agtggaagct 8941 gtgaacgatc caaggttctg ggctctagtg gacaaggaaa gagagcacca cctgagagga 9001 gagtgccaga gttgtgtgta caacatgatg ggaaaaagag aaaagaaaca aggggaattt 9061 ggaaaggcca agggcagccg cgccatctgg tatatgtggc tgggggctag atttctagag 9121 ttcgaagccc ttggattctt gaacgaggat cactggatgg ggagagagaa ctcaggaggt 9181 ggtgttgaag ggctgggatt acaaagactc ggatatgtcc tagaagagat gagtcgtata 9241 ccaggaggaa ggatgtatgc agatgacact gctggctggg acacccgcat tagcaggttt 9301 gatctggaga atgaagctct aatcaccaac caaatggaga aagggcacag ggccttggca 9361 ttggccataa tcaagtacac ataccaaaac aaagtggtaa aggtccttag accagctgaa 9421 aaagggaaaa cagttatgga cattatttcg agacaagacc aaagggggag cggacaagtt 9481 gtcacttacg ctcttaacac atttaccaac ctagtggtgc aactcattcg gaatatggag 9541 gctgaggaag ttctagagat gcaagacttg tggctgctgc ggaggtcaga gaaagtgacc 9601 aactggttgc agagcaacgg atgggatagg ctcaaacgaa tggcagtcag tggagatgat 9661 tgcgttgtga agccaattga tgataggttt gcacatgccc tcaggttctt gaatgatatg 9721 ggaaaagtta ggaaggacac acaagagtgg aaaccctcaa ctggatggga caactgggaa 9781 gaagttccgt tttgctccca ccatttcaac aagctccatc tcaaggacgg gaggtccatt 9841 gtggttccct gccgccacca agatgaactg attggccggg cccgcgtctc tccaggggcg 9901 ggatggagca tccgggagac tgcttgccta gcaaaatcat atgcgcaaat gtggcagctc 9961 ctttatttcc acagaaggga cctccgactg atggccaatg ccatttgttc atctgtgcca 10021 gttgactggg ttccaactgg gagaactacc tggtcaatcc atggaaaggg agaatggatg 10081 accactgaag acatgcttgt ggtgtggaac agagtgtgga ttgaggagaa cgaccacatg 10141 gaagacaaga ccccagttac gaaatggaca gacattccct atttgggaaa aagggaagac 10201 ttgtggtgtg gatctctcat agggcacaga ccgcgcacca cctgggctga gaacattaaa 10261 aacacagtca acatggtgcg caggatcata ggtgatgaag aaaagtacat ggattaccta 10321 tccacccaag ttcgctactt gggtgaagaa gggtctacac ctggagtgct gtaagcacca 10381 atcttaatgt tgtcaggcct gctagtcagc cacagcttgg ggaaagctgt gcagcctgtg 10441 acccccccag gagaagctgg gaaaccaagc ctatagtcag gccgagaacg ccatggcacg 10501 gaagaagcca tgctgcctgt gagcccctca gaggacactg agtcaaaaaa ccccacgcgc 10561 ttggaggcgc aggatgggaa aagaaggtgg cgaccttccc cacccttcaa tctggggcct 10621 gaactggaga tcagctgtgg atctccagaa gagggactag tggttagagg agaccccccg Link to comment Share on other sites More sharing options...
niman Posted August 29, 2016 Author Report Share Posted August 29, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18966 18966 100% 0.0 100% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18888 18888 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18888 18888 100% 0.0 99% KU761564.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18883 18883 100% 0.0 99% KX056898.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18877 18877 100% 0.0 99% KU820898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18872 18872 100% 0.0 99% KU955590.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18800 18800 100% 0.0 99% KU758877.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18794 18794 100% 0.0 99% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18794 18794 100% 0.0 99% KU365779.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18788 18788 100% 0.0 99% KU365778.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18777 18777 100% 0.0 99% KU937936.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18777 18777 100% 0.0 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18777 18777 100% 0.0 99% KU365780.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18777 18777 100% 0.0 99% KU312312.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18772 18772 100% 0.0 99% KX447510.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18772 18772 100% 0.0 99% KX601168.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18772 18772 100% 0.0 99% KX087101.2 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18772 18772 100% 0.0 99% KU365777.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18766 18766 100% 0.0 99% KX377337.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18761 18761 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18761 18761 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18761 18761 100% 0.0 99% KU509998.3 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18755 18755 100% 0.0 99% KX447511.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18755 18755 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18755 18755 100% 0.0 99% KU991811.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 18755 18755 100% 0.0 99% KJ776791.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18750 18750 100% 0.0 99% KX447513.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18750 18750 100% 0.0 99% KX198135.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18744 18744 100% 0.0 99% KX447515.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18744 18744 100% 0.0 99% KX280026.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18744 18744 100% 0.0 99% KU321639.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18739 18739 100% 0.0 99% KX447514.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18739 18739 100% 0.0 99% KX262887.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18739 18739 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18733 18733 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18733 18733 100% 0.0 99% KU729218.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18727 18727 100% 0.0 99% KX694534.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18727 18727 100% 0.0 99% KX247646.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18727 18727 100% 0.0 99% KX197192.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18727 18727 100% 0.0 99% KU926309.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18716 18716 100% 0.0 99% KU820897.5 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18716 18716 100% 0.0 99% KX156776.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18716 18716 100% 0.0 99% KX087102.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18716 18716 100% 0.0 99% KU501217.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18713 18713 99% 0.0 99% KU497555.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18711 18711 100% 0.0 99% KX156774.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18711 18711 100% 0.0 99% KU940228.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18711 18711 100% 0.0 99% KU729217.2 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18711 18711 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18711 18711 100% 0.0 99% KU501216.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18705 18705 100% 0.0 99% KX447517.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18705 18705 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18705 18705 100% 0.0 99% KX156775.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18700 18700 100% 0.0 99% KU527068.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18694 18694 100% 0.0 99% KX702400.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18694 18694 100% 0.0 99% KX446951.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18689 18689 100% 0.0 99% KX520666.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18689 18689 100% 0.0 99% KX446950.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18689 18689 100% 0.0 99% KU870645.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18689 18689 100% 0.0 99% KU922960.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18683 18683 100% 0.0 99% KX548902.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18683 18683 100% 0.0 99% KU926310.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18683 18683 100% 0.0 99% KU922923.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18672 18672 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18670 18670 100% 0.0 99% KU853012.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18661 18661 100% 0.0 99% KX766029.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18644 18644 100% 0.0 99% KX673530.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18644 18644 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18633 18633 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18633 18633 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18628 18628 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18628 18628 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18628 18628 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18624 18624 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18622 18622 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18613 18613 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18511 18511 100% 0.0 99% KU744693.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18356 18356 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 18207 18207 100% 0.0 99% KX694532.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17981 17981 99% 0.0 98% JN860885.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 17980 17980 100% 0.0 98% KU955593.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 17970 17970 98% 0.0 99% KF993678.1 Select seq gb|EU545988.1| Zika virus polyprotein gene, complete cds 17795 17795 100% 0.0 98% EU545988.1 Select seq gb|KU681082.3| Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome 17608 17608 100% 0.0 98% KU681082.3 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 16571 16571 88% 0.0 99% KX447518.1 Select seq gb|KX601167.1| Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome 16373 16373 99% 0.0 95% KX601167.1 Select seq gb|HQ234499.1| Zika virus isolate P6-740 polyprotein gene, partial cds 16367 16367 99% 0.0 95% HQ234499.1 Select seq gb|KX694533.1| Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome 16362 16362 99% 0.0 95% KX694533.1 Select seq gb|KX377336.1| Zika virus strain P6-740, complete genome 16356 16356 99% 0.0 95% KX377336.1 Select seq gb|KF383115.1| Zika virus strain ArB1362 polyprotein gene, complete cds 12630 12630 100% 0.0 89% KF383115.1 Select seq gb|KU720415.1| Zika virus strain MR 766 polyprotein gene, complete cds 12595 12595 100% 0.0 89% KU720415.1 Select seq gb|HQ234498.1| Zika virus isolate MR_766 polyprotein gene, partial cds 12589 12589 99% 0.0 89% HQ234498.1 Select seq gb|KX377335.1| Zika virus strain MR-766, complete genome 12578 12578 100% 0.0 89% KX377335.1 Select seq gb|KF268949.1| Zika virus isolate ARB15076 polyprotein gene, complete cds 12578 12578 100% 0.0 89% KF268949.1 Select seq gb|KU955595.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome 12573 12573 100% 0.0 89% KU955595.1 Select seq gb|KF268948.1| Zika virus isolate ARB13565 polyprotein gene, complete cds 12569 12569 100% 0.0 89% KF268948.1 Select seq dbj|LC002520.1| Zika virus genomic RNA, complete genome, strain: MR766-NIID 12567 12567 100% 0.0 89% LC002520.1 Select seq gb|KF383119.1| Zika virus strain ArD158084 polyprotein gene, complete cds 12567 12567 100% 0.0 89% KF383119.1 Select seq gb|KU955592.1| Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome 12562 12562 100% 0.0 89% KU955592.1 Select seq gb|KF268950.1| Zika virus isolate ARB7701 polyprotein gene, complete cds 12562 12562 100% 0.0 89% KF268950.1 Select seq gb|KX198134.1| Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome 12545 12545 100% 0.0 89% KX198134.1 Select seq gb|KF383116.1| Zika virus strain ArD7117 polyprotein gene, complete cds 12545 12545 100% 0.0 89% KF383116.1 Select seq gb|KU955591.1| Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome 12539 12539 100% 0.0 89% KU955591.1 Select seq gb|KX601169.1| Zika virus strain ZIKV/Macaca mulatta/UGA/MR-766/1947, complete genome 12534 12534 100% 0.0 89% KX601169.1 Select seq gb|KU963573.1| Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds 12534 12534 100% 0.0 89% KU963573.1 Select seq gb|KU955594.1| Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome 12534 12534 100% 0.0 89% KU955594.1 Select seq gb|DQ859059.1| Zika virus strain MR 766 polyprotein gene, complete cds 12523 12523 100% 0.0 89% DQ859059.1 Select seq gb|HQ234501.1| Zika virus isolate ArD_41519 polyprotein gene, partial cds 12502 12502 99% 0.0 89% HQ234501.1 Select seq gb|AY632535.2| Zika virus strain MR 766, complete genome 12495 12495 100% 0.0 89% AY632535.2 Select seq gb|KF383117.1| Zika virus strain ArD128000 polyprotein gene, complete cds 12478 12478 100% 0.0 89% KF383117.1 Select seq gb|KX601166.1| Zika virus strain ZIKV/Aedes africanus/SEN/DakAr41524/1984, complete genome 12454 12454 100% 0.0 89% KX601166.1 Select seq gb|KU963574.1| Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds 12410 12410 100% 0.0 89% KU963574.1 Select seq gb|HQ234500.1| Zika virus isolate IbH_30656 polyprotein gene, partial cds 12410 12410 99% 0.0 89% HQ234500.1 Select seq gb|KF383118.1| Zika virus strain ArD157995 polyprotein gene, complete cds 12205 12205 100% 0.0 88% KF383118.1 Select seq gb|KF383121.1| Zika virus strain ArD158095 polyprotein gene, partial cds 12185 12185 97% 0.0 89% KF383121.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 11756 16156 86% 0.0 99% KX447520.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 11140 18743 100% 0.0 99% KX576684.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 10213 16444 87% 0.0 99% KX447519.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 10054 15285 81% 0.0 99% KX447521.1 Select seq gb|KF383120.1| Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence 9788 9788 97% 0.0 84% KF383120.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 5110 5110 27% 0.0 99% KU758871.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 5108 5108 27% 0.0 99% KU758875.1 Select seq gb|KX212103.1| Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds 5105 5105 27% 0.0 99% KX212103.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 5103 5103 27% 0.0 99% KU758870.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 5101 5101 27% 0.0 99% KU312314.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 5099 5099 27% 0.0 99% KU758873.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 5084 5084 27% 0.0 99% KU758872.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 5072 5072 27% 0.0 99% KU758876.1 Select seq gb|KU312313.1| Zika virus isolate Z1106032 polyprotein gene, partial cds 5068 5068 27% 0.0 99% KU312313.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 5046 5046 26% 0.0 99% KU758869.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 5020 5020 26% 0.0 99% KU758868.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 5014 5014 26% 0.0 99% KU758874.1 Select seq gb|KU646828.1| Zika virus isolate Si322 polyprotein gene, partial cds 4750 4750 25% 0.0 99% KU646828.1 Select seq gb|KU646827.1| Zika virus isolate Si323 polyprotein gene, partial cds 4739 4739 25% 0.0 99% KU646827.1 Select seq gb|KU940227.1| Zika virus isolate Bahia08, partial genome 4532 14500 78% 0.0 98% KU940227.1 Select seq gb|KU312315.1| Zika virus isolate Z1106027 polyprotein gene, partial cds 3530 3530 18% 0.0 99% KU312315.1 Select seq gb|KU740199.1| Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds 3310 3310 17% 0.0 99% KU740199.1 Select seq gb|KX101066.1| Zika virus isolate Bahia01, partial genome 3181 13110 71% 0.0 99% KX101066.1 Select seq gb|KX101060.1| Zika virus isolate Bahia02, partial genome 2848 10207 54% 0.0 99% KX101060.1 Select seq gb|KJ634273.1| Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds 2750 2750 14% 0.0 99% KJ634273.1 Select seq dbj|LC171327.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV/Hu/Chiba/S36/2016 2745 2745 14% 0.0 99% LC171327.1 Select seq gb|KU686218.1| Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds 2087 2087 11% 0.0 99% KU686218.1 Select seq gb|KU179098.1| Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds 2043 2043 11% 0.0 99% KU179098.1 Select seq gb|KU886298.1| Zika virus isolate MN NS5 gene, partial cds 1893 1893 10% 0.0 99% KU886298.1 Select seq gb|KX101061.1| Zika virus isolate Bahia03, partial genome 1879 13816 74% 0.0 99% KX101061.1 Select seq gb|KX059014.1| Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds 1864 1864 9% 0.0 99% KX059014.1 Select seq gb|KX059013.1| Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds 1864 1864 9% 0.0 99% KX059013.1 Select seq gb|KM078936.1| Zika virus strain CHI1410214 NS5 protein gene, partial cds 1775 1775 9% 0.0 99% KM078936.1 Select seq gb|KM078961.1| Zika virus strain CHI2612114 NS5 protein gene, partial cds 1772 1772 9% 0.0 99% KM078961.1 Select seq gb|KM078930.1| Zika virus strain CHI2283714 NS5 protein gene, partial cds 1770 1770 9% 0.0 99% KM078930.1 Select seq gb|KM078971.1| Zika virus strain CHI2613014 NS5 protein gene, partial cds 1766 1766 9% 0.0 99% KM078971.1 Select seq gb|KM078970.1| Zika virus strain CHI2490414 NS5 protein gene, partial cds 1766 1766 9% 0.0 99% KM078970.1 Select seq gb|KM078933.1| Zika virus strain CHI1058514 NS5 protein gene, partial cds 1766 1766 9% 0.0 99% KM078933.1 Select seq gb|KM078929.1| Zika virus strain CHI1805214 NS5 protein gene, partial cds 1764 1764 9% 0.0 99% KM078929.1 Select seq gb|KX173841.1| Zika virus isolate 16Z11 envelope protein gene, partial cds 1692 1692 9% 0.0 99% KX173841.1 Select seq gb|KX173840.1| Zika virus isolate 16Z10 envelope protein gene, partial cds 1692 1692 9% 0.0 99% KX173840.1 Select seq gb|KJ873160.1| Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds 1628 1628 8% 0.0 99% KJ873160.1 Select seq gb|KX101064.1| Zika virus isolate Bahia11, partial genome 1611 9199 49% 0.0 99% KX101064.1 Select seq gb|KX173843.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1559 1559 8% 0.0 99% KX173843.1 Select seq gb|KX173844.1| Zika virus isolate 16Z62 envelope protein gene, partial cds 1548 1548 8% 0.0 99% KX173844.1 Select seq gb|KJ873161.1| Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds 1441 1441 7% 0.0 99% KJ873161.1 Select seq gb|KM851039.1| Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds 1402 1402 7% 0.0 99% KM851039.1 Select seq gb|KU985087.1| Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds 1373 1373 7% 0.0 99% KU985087.1 Select seq gb|KU556802.1| Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds 1367 1367 7% 0.0 99% KU556802.1 Select seq gb|KM851038.1| Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds 1358 1358 7% 0.0 98% KM851038.1 Select seq gb|KU724096.1| Zika virus isolate 259249_2015_Panama NS5B gene, partial cds 1336 1336 7% 0.0 99% KU724096.1 Select seq gb|KT200609.1| Zika virus isolate BR/949/15 NS5 gene, partial cds 1264 1264 6% 0.0 99% KT200609.1 Select seq gb|KU232290.1| Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds 1258 1258 6% 0.0 99% KU232290.1 Select seq gb|KU232300.1| Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds 1256 1256 6% 0.0 99% KU232300.1 Select seq gb|KU232297.1| Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds 1254 1254 6% 0.0 99% KU232297.1 Select seq gb|KU232294.1| Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds 1243 1243 6% 0.0 99% KU232294.1 Select seq gb|KU232298.1| Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds 1242 1242 6% 0.0 99% KU232298.1 Select seq gb|KU232292.1| Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds 1240 1240 6% 0.0 99% KU232292.1 Select seq gb|KU232296.1| Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds 1238 1238 6% 0.0 99% KU232296.1 Select seq gb|KU232293.1| Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds 1238 1238 6% 0.0 99% KU232293.1 Select seq gb|AF013415.1| Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds 1236 1236 10% 0.0 88% AF013415.1 Select seq gb|KU232295.1| Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds 1230 1230 6% 0.0 99% KU232295.1 Select seq gb|KU232288.1| Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds 1218 1218 6% 0.0 99% KU232288.1 Select seq gb|KU232289.1| Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds 1214 1214 6% 0.0 99% KU232289.1 Select seq gb|KU232299.1| Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds 1210 1210 6% 0.0 99% KU232299.1 Select seq gb|KU232291.1| Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds 1205 1205 6% 0.0 99% KU232291.1 Select seq gb|KU724097.1| Zika virus isolate 259250_2015_Panama NS5B gene, partial cds 1201 1201 6% 0.0 99% KU724097.1 Select seq gb|KX101065.1| Zika virus isolate Bahia15, partial genome 1201 7390 39% 0.0 99% KX101065.1 Select seq gb|KX101063.1| Zika virus isolate Bahia05, partial genome 1190 7423 40% 0.0 99% KX101063.1 Select seq gb|KU724098.1| Zika virus isolate 259060_2015_Panama NS5B gene, partial cds 1188 1188 6% 0.0 99% KU724098.1 Select seq gb|KU758878.1| Zika virus polyprotein gene, partial cds 1164 1164 6% 0.0 99% KU758878.1 Select seq gb|KU724099.1| Zika virus isolate 259032_2015_Panama NS5B gene, partial cds 1122 1122 5% 0.0 99% KU724099.1 Select seq gb|KX101062.1| Zika virus isolate Bahia04, partial genome 1072 7308 40% 0.0 97% KX101062.1 Select seq gb|KU867812.1| Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds 1037 1037 5% 0.0 99% KU867812.1 Select seq gb|KF270886.1| Zika virus strain CCB-870 envelope glycoprotein gene, partial cds 1005 1005 8% 0.0 88% KF270886.1 Select seq gb|KU724100.1| Zika virus isolate 259043_2015_Panama NS5B gene, partial cds 959 959 5% 0.0 99% KU724100.1 Select seq gb|KF270887.1| Zika virus strain CCB-870 NS3 protein gene, partial cds 933 933 7% 0.0 89% KF270887.1 Select seq gb|KF383022.1| Zika virus strain ArD127988 envelope protein gene, partial cds 922 922 7% 0.0 89% KF383022.1 Select seq gb|KF383026.1| Zika virus strain ArD127994 envelope protein gene, partial cds 917 917 7% 0.0 89% KF383026.1 Select seq gb|EU303241.1| Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds 911 911 7% 0.0 88% EU303241.1 Select seq gb|KF383037.1| Zika virus strain ArA506 envelope protein gene, partial cds 905 905 7% 0.0 88% KF383037.1 Select seq gb|KF383036.1| Zika virus strain ArA975 envelope protein gene, partial cds 900 900 7% 0.0 88% KF383036.1 Select seq gb|KX247638.1| Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene, partial cds 881 881 4% 0.0 99% KX247638.1 Select seq gb|KU978616.1| Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds 876 876 4% 0.0 99% KU978616.1 Select seq gb|KF383039.1| Zika virus strain HD78788 envelope protein gene, partial cds 872 872 7% 0.0 88% KF383039.1 Select seq gb|KF383038.1| Zika virus strain ArA986 envelope protein gene, partial cds 867 867 7% 0.0 87% KF383038.1 Select seq dbj|AB908162.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID 857 857 4% 0.0 99% AB908162.1 Select seq gb|KF383046.1| Zika virus strain ArA982 envelope protein gene, partial cds 856 856 7% 0.0 87% KF383046.1 Select seq gb|KF383103.1| Zika virus strain ArA986 nonstructural protein 5 gene, partial cds 846 846 6% 0.0 88% KF383103.1 Select seq gb|KF383086.1| Zika virus strain ArA975 nonstructural protein 5 gene, partial cds 846 846 6% 0.0 88% KF383086.1 Select seq gb|KF383045.1| Zika virus strain ArA27106 envelope protein gene, partial cds 833 833 7% 0.0 87% KF383045.1 Select seq gb|KF383043.1| Zika virus strain ArA27443 envelope protein gene, partial cds 828 828 7% 0.0 87% KF383043.1 Select seq gb|KX253994.1| Zika virus strain ZIKV/Homo sapiens/GER/GER-BNI-P2/2016 polyprotein gene, partial cds 826 826 4% 0.0 100% KX253994.1 Select seq gb|KF383041.1| Zika virus strain ArA27290 envelope protein gene, partial cds 822 822 7% 0.0 86% KF383041.1 Select seq gb|KF383042.1| Zika virus strain ArA27096 envelope protein gene, partial cds 817 817 7% 0.0 86% KF383042.1 Select seq gb|KX101067.1| Zika virus isolate Bahia12, partial genome 815 8692 48% 0.0 99% KX101067.1 Select seq gb|KU872850.1| Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds 815 815 4% 0.0 99% KU872850.1 Select seq gb|KF383104.1| Zika virus strain ArA982 nonstructural protein 5 gene, partial cds 813 813 6% 0.0 87% KF383104.1 Select seq gb|KF383085.1| Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds 808 808 6% 0.0 87% KF383085.1 Select seq gb|KF383106.1| Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds 802 802 6% 0.0 87% KF383106.1 Select seq gb|KF383114.1| Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds 797 797 6% 0.0 87% KF383114.1 Select seq gb|KF383107.1| Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds 797 797 6% 0.0 87% KF383107.1 Select seq gb|KF383088.1| Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds 797 797 6% 0.0 87% KF383088.1 Select seq gb|KF383087.1| Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds 791 791 6% 0.0 87% KF383087.1 Select seq gb|KF383089.1| Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds 774 774 6% 0.0 86% KF383089.1 Select seq gb|KF383101.1| Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds 769 769 6% 0.0 86% KF383101.1 Select seq gb|KF383097.1| Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds 769 769 6% 0.0 86% KF383097.1 Select seq gb|KF383099.1| Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds 763 763 6% 0.0 86% KF383099.1 Select seq gb|KF383098.1| Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds 758 758 6% 0.0 86% KF383098.1 Select seq gb|KF383113.1| Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds 719 719 6% 0.0 85% KF383113.1 Select seq gb|KX253995.1| Zika virus strain ZIKV/Homo sapiens/PRI/PRI-BNI-P1/2016 polyprotein gene, partial cds 697 697 3% 0.0 100% KX253995.1 Select seq gb|KF258813.1| Zika virus isolate Java non-structural protein 5 mRNA, partial cds 693 693 3% 0.0 98% KF258813.1 Select seq gb|KU985088.1| Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds 662 662 3% 0.0 99% KU985088.1 Select seq gb|KX062045.1| Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds 634 634 3% 1e-176 99% KX062045.1 Select seq gb|KX062044.1| Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds 628 628 3% 6e-175 99% KX062044.1 Select seq gb|KF383017.1| Zika virus strain ArD149938 envelope protein gene, partial cds 617 617 7% 1e-171 81% KF383017.1 Select seq gb|KF383016.1| Zika virus strain ArD147917 envelope protein gene, partial cds 612 612 7% 6e-170 81% KF383016.1 Select seq gb|KF383015.1| Zika virus strain ArD149810 envelope protein gene, partial cds 612 612 7% 6e-170 81% KF383015.1 Select seq gb|KF383021.1| Zika virus strain ArD132912 envelope protein gene, partial cds 604 604 7% 1e-167 81% KF383021.1 Select seq gb|KF383020.1| Zika virus strain ArA1465 envelope protein gene, partial cds 604 604 7% 1e-167 81% KF383020.1 Select seq gb|KX173842.1| Zika virus isolate 16Z08 envelope protein gene, partial cds 603 603 3% 4e-167 99% KX173842.1 Select seq gb|KF383019.1| Zika virus strain ArD132915 envelope protein gene, partial cds 590 590 7% 3e-163 81% KF383019.1 Select seq gb|KR815989.1| Zika virus isolate 15095 envelope protein gene, partial cds 588 588 3% 1e-162 99% KR815989.1 Select seq gb|KF383092.1| Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds 566 566 6% 5e-156 81% KF383092.1 Select seq gb|KF383093.1| Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds 564 564 6% 2e-155 81% KF383093.1 Select seq gb|KF383091.1| Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds 553 553 6% 4e-152 81% KF383091.1 Select seq gb|KM212966.1| Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds 547 547 2% 2e-150 100% KM212966.1 Select seq gb|KR816334.1| Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds 545 545 2% 6e-150 99% KR816334.1 Select seq gb|KR816333.1| Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds 544 544 2% 2e-149 99% KR816333.1 Select seq gb|KM212965.1| Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds 542 542 2% 8e-149 99% KM212965.1 Select seq gb|KM212964.1| Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds 542 542 2% 8e-149 99% KM212964.1 Select seq gb|KM212963.1| Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds 542 542 2% 8e-149 99% KM212963.1 Select seq gb|KR816335.1| Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds 540 540 2% 3e-148 98% KR816335.1 Select seq gb|KJ579441.1| Zika virus isolate PF13-CP221013c polyprotein gene, partial cds 520 520 2% 4e-142 100% KJ579441.1 Select seq gb|KJ680134.1| Zika virus strain PF13-091213-121 polyprotein gene, partial cds 514 514 2% 2e-140 99% KJ680134.1 Link to comment Share on other sites More sharing options...
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