niman Posted September 3, 2016 Report Share Posted September 3, 2016 LOCUS KX162585 289 bp cRNA linear VRL 31-AUG-2016 DEFINITION Zika virus isolate bruspCE08_15 polyprotein gene, partial cds. ACCESSION KX162585 VERSION KX162585.1 GI:1024848169 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 289) AUTHORS Favoretto,S., Araujo,D., Oliveira,D., Duarte,N., Mesquita,F., Zanotto,P. and Durigon,E. TITLE First detection of Zika virus in neotropical primates in Brazil: a possible new reservoir JOURNAL Unpublished REFERENCE 2 (bases 1 to 289) AUTHORS Oliveira,D., Favoretto,S., Araujo,D., Mesquita,F. and Durigon,E. TITLE Direct Submission JOURNAL Submitted (29-APR-2016) Microbiology - Institute of Biomedical Sciences, University of Sao Paulo, Av. Professor Lineu Prestes, Sao Paulo, Sao Paulo 05508900, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..289 /organism="Zika virus" /mol_type="viral cRNA" /isolate="bruspCE08_15" /host="Sapajus libidinosus" /db_xref="taxon:64320" /country="Brazil" /collection_date="06-Jun-2015" CDS <1..>289 Link to comment Share on other sites More sharing options...
niman Posted September 3, 2016 Author Report Share Posted September 3, 2016 LOCUS KX162585 289 bp cRNA linear VRL 31-AUG-2016 DEFINITION Zika virus isolate bruspCE08_15 polyprotein gene, partial cds. ACCESSION KX162585 VERSION KX162585.1 GI:1024848169 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 289) AUTHORS Favoretto,S., Araujo,D., Oliveira,D., Duarte,N., Mesquita,F., Zanotto,P. and Durigon,E. TITLE First detection of Zika virus in neotropical primates in Brazil: a possible new reservoir JOURNAL Unpublished REFERENCE 2 (bases 1 to 289) AUTHORS Oliveira,D., Favoretto,S., Araujo,D., Mesquita,F. and Durigon,E. TITLE Direct Submission JOURNAL Submitted (29-APR-2016) Microbiology - Institute of Biomedical Sciences, University of Sao Paulo, Av. Professor Lineu Prestes, Sao Paulo, Sao Paulo 05508900, Brazil COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..289 /organism="Zika virus" /mol_type="viral cRNA" /isolate="bruspCE08_15" /host="Sapajus libidinosus" /db_xref="taxon:64320" /country="Brazil" /collection_date="06-Jun-2015" CDS <1..>289 /codon_start=1 /product="polyprotein" /protein_id="ANC28273.1" /db_xref="GI:1024848170" /translation="LVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVT VMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDK" ORIGIN 1 ttggtcatga tactgctgat tgccccggca tacagcatca ggtgcatagg agtcagcaat 61 agggactttg tggaaggtat gtcaggtggg acttgggttg atgttgtctt ggaacatgga 121 ggttgtgtca ccgtaatggc acaggacaaa ccgactgtcg acatagagct ggttacaaca 181 acagtcagca acatggcgga ggtaagatcc tactgctatg aggcatcaat atcagacatg 241 gcttcggaca gccgctgccc aacacaaggt gaagcctacc ttgacaagc Link to comment Share on other sites More sharing options...
niman Posted September 3, 2016 Author Report Share Posted September 3, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 534 534 100% 3e-148 100% KX766028.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 534 534 100% 3e-148 100% KX694534.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 534 534 100% 3e-148 100% KX447520.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 534 534 100% 3e-148 100% KX447519.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 534 534 100% 3e-148 100% KX447518.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 534 534 100% 3e-148 100% KX447513.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 534 534 100% 3e-148 100% KX447512.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 534 534 100% 3e-148 100% KX447511.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 534 534 100% 3e-148 100% KX447510.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 534 534 100% 3e-148 100% KX576684.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 534 534 100% 3e-148 100% KX548902.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 534 534 100% 3e-148 100% KX520666.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 534 534 100% 3e-148 100% KX369547.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 534 534 100% 3e-148 100% KU758877.1 Select seq gb|KU758876.1| Zika virus isolate 21068 polyprotein gene, partial cds 534 534 100% 3e-148 100% KU758876.1 Select seq gb|KU758875.1| Zika virus isolate 15042 polyprotein gene, partial cds 534 534 100% 3e-148 100% KU758875.1 Select seq gb|KU758874.1| Zika virus isolate 20114 polyprotein gene, partial cds 534 534 100% 3e-148 100% KU758874.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 534 534 100% 3e-148 100% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 534 534 100% 3e-148 100% KU758870.1 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 534 534 100% 3e-148 100% KU758869.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 534 534 100% 3e-148 100% KU758868.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 534 534 100% 3e-148 100% KX280026.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 534 534 100% 3e-148 100% KX262887.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 534 534 100% 3e-148 100% KX198135.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 534 534 100% 3e-148 100% KU937936.1 Select seq gb|KX101060.1| Zika virus isolate Bahia02, partial genome 534 534 100% 3e-148 100% KX101060.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 534 534 100% 3e-148 100% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 534 534 100% 3e-148 100% KU509998.3 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 534 534 100% 3e-148 100% KU940228.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 534 534 100% 3e-148 100% KU940224.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 534 534 100% 3e-148 100% KU870645.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 534 534 100% 3e-148 100% KU926310.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 534 534 100% 3e-148 100% KU922960.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 534 534 100% 3e-148 100% KU820898.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 534 534 100% 3e-148 100% KU740184.2 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 534 534 100% 3e-148 100% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 534 534 100% 3e-148 100% KU853012.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 534 534 100% 3e-148 100% KU729218.1 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 534 534 100% 3e-148 100% KU761564.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 534 534 100% 3e-148 100% KU527068.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 534 534 100% 3e-148 100% KU647676.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 534 534 100% 3e-148 100% KU365778.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 534 534 100% 3e-148 100% KU312314.1 Select seq gb|KU312313.1| Zika virus isolate Z1106032 polyprotein gene, partial cds 534 534 100% 3e-148 100% KU312313.1 Select seq dbj|AB908162.1| Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID 534 534 100% 3e-148 100% AB908162.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 529 529 100% 2e-146 99% KU820897.5 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 529 529 100% 2e-146 99% KX766029.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 529 529 100% 2e-146 99% KX702400.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 529 529 100% 2e-146 99% KX673530.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 529 529 100% 2e-146 99% KX447521.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 529 529 100% 2e-146 99% KX447517.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 529 529 100% 2e-146 99% KX447516.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 529 529 100% 2e-146 99% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 529 529 100% 2e-146 99% KX447514.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 529 529 100% 2e-146 99% KX447509.1 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 529 529 100% 2e-146 99% KX266255.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 529 529 100% 2e-146 99% KX601168.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 529 529 100% 2e-146 99% KX377337.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 529 529 100% 2e-146 99% KU866423.2 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 529 529 100% 2e-146 99% KU758873.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 529 529 100% 2e-146 99% KX253996.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 529 529 100% 2e-146 99% KX247646.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 529 529 100% 2e-146 99% KX247632.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 529 529 100% 2e-146 99% KX087101.2 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 529 529 100% 2e-146 99% KX197192.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 529 529 100% 2e-146 99% KX185891.1 Select seq gb|KX173842.1| Zika virus isolate 16Z08 envelope protein gene, partial cds 529 529 100% 2e-146 99% KX173842.1 Select seq gb|KX173841.1| Zika virus isolate 16Z11 envelope protein gene, partial cds 529 529 100% 2e-146 99% KX173841.1 Select seq gb|KX173840.1| Zika virus isolate 16Z10 envelope protein gene, partial cds 529 529 100% 2e-146 99% KX173840.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 529 529 100% 2e-146 99% KX156776.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 529 529 100% 2e-146 99% KX156775.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 529 529 100% 2e-146 99% KX156774.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 529 529 100% 2e-146 99% KX117076.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 529 529 100% 2e-146 99% KX087102.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 529 529 100% 2e-146 99% KX056898.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 529 529 100% 2e-146 99% KU963796.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 529 529 100% 2e-146 99% KU991811.1 Select seq gb|KU940227.1| Zika virus isolate Bahia08, partial genome 529 529 100% 2e-146 99% KU940227.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 529 529 100% 2e-146 99% KU955590.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 529 529 100% 2e-146 99% KU955589.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 529 529 100% 2e-146 99% KU926309.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 529 529 100% 2e-146 99% KU922923.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 529 529 100% 2e-146 99% KU820899.2 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 529 529 100% 2e-146 99% KU744693.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 529 529 100% 2e-146 99% KU497555.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 529 529 100% 2e-146 99% KU707826.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 529 529 100% 2e-146 99% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 529 529 100% 2e-146 99% KU501216.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 529 529 100% 2e-146 99% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 529 529 100% 2e-146 99% KU365780.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 529 529 100% 2e-146 99% KU365779.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 529 529 100% 2e-146 99% KU365777.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 529 529 100% 2e-146 99% KU312312.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 529 529 100% 2e-146 99% KU321639.1 Select seq gb|KJ776791.1| Zika virus strain H/PF/2013 polyprotein gene, complete cds 529 529 100% 2e-146 99% KJ776791.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 523 523 100% 7e-145 99% KX446951.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 523 523 100% 7e-145 99% KX446950.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 523 523 100% 7e-145 99% KU758872.1 Select seq gb|KU955593.1| Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome 523 523 100% 7e-145 99% KU955593.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 523 523 100% 7e-145 99% KU681081.3 Link to comment Share on other sites More sharing options...
niman Posted September 3, 2016 Author Report Share Posted September 3, 2016 Black-striped capuchin From Wikipedia, the free encyclopedia Black-striped capuchin[1] Adult female and juvenile Conservation status Least Concern (IUCN 3.1)[2] Scientific classification Kingdom: Animalia Phylum: Chordata Class: Mammalia Order: Primates Family: Cebidae Genus: Sapajus Species: S. libidinosus Binomial name Sapajus libidinosusSpix, 1823 Range of S. libidinosus, excluding the subspecies cay and juruanus Synonyms Cebus libidinosus The black-striped capuchin (Sapajus libidinosus), also known as the bearded capuchin,[2] is acapuchin monkey from South America. It was the first non-ape primate in which tool usage was documented in the wild, as individuals have been seen cracking nuts by placing them on a stone "anvil" while hitting them with another large stone.[3] Adaptations to carrying large stones and fruit include strengthened back and leg muscles that permit the monkey to walk on its hind legs while carrying stones.[4] The black-striped capuchin has traditionally been considered a subspecies of the tufted capuchin.[1] On the contrary, the southern population here included in S. libidinosus has sometimes been considered another species, Azaras's capuchin (S. cay) (syn. S. paraguayanus).[5] The black-striped capuchin is found in the Caatinga, Cerrado, and Pantanal of Brazil.[2] Some confusion surrounds the taxon juruanus, here included as a subspecies of the black-striped capuchin.[2] It has been considered to occur from the upper Juruá River east and south to Mato Grosso,[6] or alternatively entirely restricted to the region near the upper Juruá River.[7] In the latter case, its range would be surrounded by C. apella, leading to doubts over its true taxonomic status.[8] Groves (2005) recognizes four subspecies:[1] Cebus libidinosus libidinosus Cebus libidinosus pallidus Cebus libidinosus paraguayanus Cebus libidinosus juruanus In 2011, Jessica Lynch Alfaro et al. proposed that the robust capuchins such (formerly the C. apellagroup) be placed in a separate genus, Sapajus, from the gracile capuchins (formerly the C. capucinusgroup), which retain the genus Cebus.[9][10] References[edit] ^ Jump up to:a b c Groves, C.P. (2005). Wilson, D.E.; Reeder, D.M., eds. Mammal Species of the World: A Taxonomic and Geographic Reference (3rd ed.). Baltimore: Johns Hopkins University Press. p. 137.OCLC 62265494. ISBN 0-801-88221-4. ^ Jump up to:a b c d Rylands, A.B.; Kierulff, M.C.M. (2015). "Sapajus libidinosus". IUCN Red List of Threatened Species.IUCN. 2015: e.T136346A70613080. doi:10.2305/IUCN.UK.2015-1.RLTS.T136346A70613080.en. Jump up^ Fragaszy D.; Izar P.; Visalberghi E.; Ottoni E. B.; Gomes, de Oliveira M. (2004). "Wild Capuchin Monkeys (Cebus libidinosus) Use Anvils and Stone Pounding Tools". American Journal of Primatology. 64: 359–366.doi:10.1002/ajp.20085. PMID 15580579. Jump up^ "Brazil's Cerrado". Mutant Planet. 2012-08-11. Science Channel. Jump up^ Wallace, R.B. (2015). "Sapajus cay". IUCN Red List of Threatened Species. IUCN. 2015: e.T136366A70612036. doi:10.2305/IUCN.UK.2015-1.RLTS.T136366A70612036.en. Jump up^ Groves, C. (2001). Primate Taxonomy. Smithsonian Institution Press. ISBN 1-56098-872-X Jump up^ Fragaszy D., Visalberghi E., & Fedigan, L. (2004). The complete capuchin. Cambridge University Press.ISBN 0-521-66116-1 Jump up^ Rylands, A.B.; Boubli, J.-P.; Mittermeier, R.A.; Wallace, R.B.; Ceballos-Mago, N. (2015). "Sapajus apella".IUCN Red List of Threatened Species. IUCN. 2015: e.T39949A70610943. doi:10.2305/IUCN.UK.2015-1.RLTS.T39949A70610943.en. Jump up^ Lynch Alfaro, J.W.; et al. (2011). "Explosive Pleistocene range expansion leads to widespread Amazonian sympatry between robust and gracile capuchin monkeys" (PDF). Journal of Biogeography. 39: 272–288.doi:10.1111/j.1365-2699.2011.02609.x. Jump up^ Lynch Alfaro, J.W.; Silva, j. & Rylands, A.B. (2012). "How Different Are Robust and Gracile Capuchin Monkeys? An Argument for the Use of Sapajus and Cebus". American Journal of Primatology: 1–14.doi:10.1002/ajp.222007. Wikispecies has information related to: Black-striped Capuchin [show] v t e Extant species of family Cebidae Categories: IUCN Red List least concern species Mammals of Brazil Mammals of Argentina Capuchin monkeys Animals described in 1823 Primates of South America Link to comment Share on other sites More sharing options...
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