niman Posted December 19, 2015 Report Share Posted December 19, 2015 A full S gene sequences as well as a a partial ORF1b sequences from Nigeria-HKU004,as well as closely related partial S gene sequences from camels in Nigeria in association with Eurosurveillance paper have been released.http://eurosurveillance.org/ViewArticle.aspx?ArticleId=21327 Link to comment Share on other sites More sharing options...
niman Posted December 19, 2015 Author Report Share Posted December 19, 2015 LOCUS KU201953 4062 bp RNA linear VRL 16-DEC-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate Nigeria-HKU004 spike protein (S) gene, complete cds. ACCESSION KU201953 VERSION KU201953.1 GI:961442027 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 4062) AUTHORS Chu,D.K., Oladipo,J.O., Perera,R.A., Kuranga,S.A., Chan,S.M., Poon,L.L. and Peiris,M. TITLE Middle East respiratory syndrome coronavirus (MERS-CoV) in dromedary camels in Nigeria, 2015 JOURNAL Euro Surveill. 20 (49), 3 (2015) REFERENCE 2 (bases 1 to 4062) AUTHORS Chu,D.K.W., Oladipo,J.O., Perera,R.A.P.M., Kuranga,S.A., Chan,S.M.S., Poon,L.L.M. and Peiris,M. TITLE Direct Submission JOURNAL Submitted (27-NOV-2015) School of Public Health, The University of Hong Kong, No. 21, Sassoon Road, Pokfulam, Hong Kong SAR COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 8.1.7 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..4062 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="Nigeria-HKU004" /host="Camelus dromedarius" /db_xref="taxon:1335626" /country="Nigeria" /collection_date="13-Jan-2015" gene 1..4062 /gene="S" CDS 1..4062 /gene="S" /codon_start=1 /product="spike protein" /protein_id="ALS20350.1" /db_xref="GI:961442028" /translation="MIHSVFLLMFLLTPTESYVDVGPDSAKSACIEVDIQQTFFDKTW PRPIDVSKADGIIYPQGRTYSNITITYQGLFPYQGDHGDMYVYSAGHATGTTPQKLFV ANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGK MGRFFNHTLVLLPDGCGTLLRAFYCILEPRSGNYCPAGNSYTSFATYHTPATDCSDGN YNRNASLNSFKEYFNLRNCTFMYTYNITEDEILEWFGITQTAQGVHLFSSRYVDLYGG NMFQFATLPVYDTIKYYSIIPHSIRSIQSDRKAWAAFYVYKLQPLTFLLDFSVDGYIR RAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQAEGVECDFSPLLSGT PPQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCSQISPAAIASNCYSSLILDYFSYPL SMKSDLSVSSAGPISQFNYKQSFSNPTCLILATVPHNLTTITKPLKYSYINKCSRLLS DDRTEVPQLVNANQYSPCVSIVPSTVWEDGDYYRKQLSPLEGGGWLVASGSTVAMTEQ LQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGNCVEYSLYGVSGRGVFQNCTAVG VRQQRFVYDAYQNLVGYYSDDGNYYCLRACVTVPVSVIYDKETKTHATLFGSVACEHI SSTMSQYSRSTRSMLKRRDSTYGPLQTPVGCVLGLVNSSLFVEDCKLPLGQSLCALPD TPSTLTPRSVRSVPGEMRLASIAFNHPIQVDQLNSSYFKLSIPTNFSFGVTQEYIQTT IQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSY QSSPIIPGFGGDFNLTLLEPVSISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMH QGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPF AQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNEAFQKVQDAVNNNA QALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVR SESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNH IEVVSAYGLCDLANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSFNTKY VAPQVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVSTSIPNFGSLTQINTTLLDL TYEMLSLQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGLVALALCVFFILCC TGCGTNCMGKLKCNRCCDRYEEYDLEPHKVHVH" ORIGIN 1 atgatacact cagtgtttct actgatgttc ttgttaacac ctacagaaag ttacgttgat 61 gtagggccag attctgctaa gtctgcttgt attgaggttg atatacaaca gactttcttt 121 gataaaactt ggcctaggcc aattgatgtt tctaaggctg acggtattat ataccctcaa 181 ggccgtacat attctaacat aactatcact tatcaaggtc tttttcccta tcagggagac 241 catggtgata tgtatgttta ctctgcagga catgctacag gcacaactcc acaaaagttg 301 tttgtagcta actattctca ggacgtcaaa cagtttgcta atgggtttgt cgtccgtata 361 ggagcagctg ccaattccac tggcactgtt attattagcc catctaccag cgctactata 421 cgaaaaattt accctgcttt tatgctgggt tcttcagttg gtaatttctc agatggtaaa 481 atgggccgct tcttcaatca tactctagtt cttttgcccg atggatgtgg cactttactt 541 agagcttttt attgtattct agagcctcgc tctggaaatt attgtcctgc tggcaattcc 601 tatacttctt ttgccactta tcacactcct gcaacagatt gttctgatgg caattacaat 661 cgtaatgcca gtctgaactc ttttaaggag tattttaatt tacgtaactg cacctttatg 721 tacacttata acattaccga agatgagatt ttagagtggt ttggcattac acaaactgct 781 caaggtgttc acctcttctc atctcggtat gttgatttgt acggcggcaa tatgtttcaa 841 tttgccacct tgcctgttta tgatactatt aagtattatt ctatcattcc tcacagtatt 901 cgttctatcc aaagtgatag aaaagcttgg gctgccttct acgtatataa acttcaaccg 961 ttaactttcc tgttggattt ttctgttgat ggttatatac gcagagctat agactgtggt 1021 tttaatgatt tgtcacaact ccactgctca tatgaatcct tcgatgttga atctggagtt 1081 tattcagttt cgtctttcga agcaaaacct tctggctcag ttgtggaaca ggctgaaggt 1141 gttgaatgtg atttttcacc tcttctgtct ggcacacctc ctcaggttta taatttcaag 1201 cgtttggttt ttaccaattg caattataat cttaccaaat tgctttcact tttttctgtg 1261 aatgatttca cttgtagtca aatatctcca gcagcaattg ctagcaactg ttattcttca 1321 ctgattttgg attacttttc atacccactt agtatgaaat ccgatctcag tgttagttct 1381 gctggtccaa tatcccagtt taattataaa cagtcctttt ctaatcccac atgtttgatt 1441 ttagcgactg ttcctcataa ccttactact attactaagc ctcttaagta cagctatatt 1501 aacaagtgct ctcgtcttct ttctgatgat cgtactgaag tacctcagtt agtgaacgct 1561 aatcaatact caccctgtgt atccattgtc ccatccactg tgtgggaaga cggtgattat 1621 tataggaaac aactatctcc acttgaaggt ggtggctggc ttgttgctag tggctcaact 1681 gttgccatga ctgagcaatt acagatgggc tttggtatta cagttcaata tggtacagac 1741 accaatagtg tttgccccaa gcttgaattt gctaatgaca caaaaattgc ctctcaatta 1801 ggcaattgcg tggaatattc cctctatggt gtttcgggcc gtggtgtttt tcagaattgc 1861 acagctgtag gtgttcgaca gcagcgcttt gtttatgatg cgtaccagaa tttagttggc 1921 tattattctg atgatggcaa ctactactgt ttgcgtgctt gtgttactgt tcctgtttct 1981 gtcatctatg ataaagaaac taaaacccac gctactctat ttggtagtgt tgcatgtgaa 2041 cacatttctt ctaccatgtc tcaatactcc cgttctacgc gatcaatgct taaacggcga 2101 gattctacat atggccccct tcagacacct gttggttgtg tcctaggact tgttaattcc 2161 tctttgttcg tagaggactg caagttgcct cttggtcaat ctctctgtgc tcttcctgac 2221 acacctagta ctctcacacc tcgcagtgtg cgctctgttc caggtgaaat gcgcttggca 2281 tccattgctt ttaatcatcc tattcaggtt gatcaactta atagtagtta ttttaaatta 2341 agtataccca ctaatttttc ctttggtgtg actcaggagt acattcagac aaccattcag 2401 aaagttactg ttgattgtaa acagtacgtt tgcaatggtt ttcagaagtg tgagcaatta 2461 ctgcgcgagt atggccagtt ttgttccaaa ataaaccagg cgctccatgg tgccaattta 2521 cgccaggatg attctgtacg taatttgttt gcgagcgtga aaagctatca atcatctcct 2581 atcataccag gttttggagg tgactttaat ttgacacttc tagaacctgt ttctatatct 2641 actggcagtc gtagtgcacg tagtgctatt gaggatttgc tatttgacaa agtcactata 2701 gctgatcctg gttatatgca aggttacgat gattgcatgc atcaaggtcc agcatcagct 2761 cgtgatctta tttgtgctca atatgtggct ggttacaaag tattacctcc tcttatggat 2821 gttaatatgg aagccgcgta tacttcatct ttgcttggca gcatagcagg tgttggctgg 2881 actgctgggt tatcctcctt tgctgctatt ccatttgcac agagtatctt ttataggtta 2941 aacggtgttg gcattactca acaggttctt tcagagaacc aaaagcttat tgccaataag 3001 tttaatcagg ctctgggagc tatgcaaaca ggcttcacta caactaatga agcttttcag 3061 aaggttcagg atgctgtgaa caacaatgca caggctctat ccaaattagc tagcgagcta 3121 tctaatacct ttggtgctat ttccgcctct attggagaca tcatacaacg tcttgatgtt 3181 ctcgaacagg acgcccaaat agacagactt attaatggcc gtttgacaac actaaatgct 3241 tttgttgcgc agcagcttgt tcgttccgaa tcagctgctc tttcggctca attggctaaa 3301 gataaagtca atgagtgtgt caaggcacaa tccaagcgtt ctggattttg cggtcaaggc 3361 acacatatag tgtcctttgt tgtaaatgcc cctaatggcc tttacttcat gcatgttggt 3421 tattacccta gcaaccacat tgaggttgtt tctgcttatg gtctttgcga tttagctaac 3481 cctactaatt gtatagcccc tgttaatggc tactttatta aaactaataa cactaggatt 3541 gttgatgagt ggtcatatac tggctcgtcc ttctatgcac ctgagcccat cacctccttt 3601 aatactaagt atgttgcacc acaggtgaca taccaaaaca tttctactaa cctccctcct 3661 cctcttctcg gcaattccac cgggattgac tttcaagatg agttggatga gtttttcaaa 3721 aatgttagca ccagtatacc taattttggt tctctaacac agattaatac tacattactc 3781 gatcttacct acgagatgtt gtctcttcaa caagttgtta aagcccttaa tgagtcttac 3841 atagacctta aagagcttgg caattatact tattacaaca aatggccgtg gtacatttgg 3901 cttggtttca ttgctgggct tgttgcctta gctctatgcg tcttcttcat actgtgctgc 3961 actggttgtg gcacaaattg tatgggaaaa cttaagtgta atcgttgttg tgatagatat 4021 gaggaatacg acctcgagcc gcataaggtt catgttcact aa Link to comment Share on other sites More sharing options...
niman Posted December 19, 2015 Author Report Share Posted December 19, 2015 Select seq gb|KC776174.1|Human betacoronavirus 2c Jordan-N3/2012, complete genome72457245100%0.099%KC776174.1Select seq gb|KJ614529.1|Human betacoronavirus 2c Jordan-N3/2012 isolate MG167, complete genome72407240100%0.099%KJ614529.1Select seq gb|JX869059.2|Human betacoronavirus 2c EMC/2012, complete genome72367236100%0.099%JX869059.2Select seq gb|KF917527.1|Middle East respiratory syndrome coronavirus isolate MERS-CoV-Jeddah-Camel-1, complete genome72217221100%0.099%KF917527.1Select seq gb|KJ556336.1|Middle East respiratory syndrome coronavirus isolate Jeddah_1_2013, complete genome72217221100%0.099%KJ556336.1Select seq gb|KJ156949.1|Middle East respiratory syndrome coronavirus isolate Taif_1_2013, complete genome72217221100%0.099%KJ156949.1Select seq gb|KJ156944.1|Middle East respiratory syndrome coronavirus isolate Riyadh_5_2013, complete genome72187218100%0.099%KJ156944.1Select seq gb|KJ156881.1|Middle East respiratory syndrome coronavirus isolate Wadi-Ad-Dawasir_1_2013, complete genome72187218100%0.099%KJ156881.1Select seq gb|KF192507.1|Middle East respiratory syndrome coronavirus, complete genome72187218100%0.099%KF192507.1Select seq gb|KC164505.2|Betacoronavirus England 1, complete genome72187218100%0.099%KC164505.2Select seq gb|KC667074.1|Human betacoronavirus 2c England-Qatar/2012, complete genome72187218100%0.099%KC667074.1Select seq gb|KP966104.1|Middle East respiratory syndrome coronavirus isolate Al-Ahsa KSA_Camel_C23 spike protein gene, complete cds72127212100%0.099%KP966104.1Select seq gb|KJ361503.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_Isolate_Sanger, complete genome72127212100%0.099%KJ361503.1Select seq gb|KJ713296.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-378, complete genome72127212100%0.099%KJ713296.1Select seq gb|KJ156952.1|Middle East respiratory syndrome coronavirus isolate Riyadh_4_2013, complete genome72127212100%0.099%KJ156952.1Select seq gb|KF600652.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2_2012, complete genome72127212100%0.099%KF600652.1Select seq gb|KF600620.1|Middle East respiratory syndrome coronavirus isolate Bisha_1_2012, complete genome72127212100%0.099%KF600620.1Select seq gb|KF600612.1|Middle East respiratory syndrome coronavirus isolate Riyadh_1_2012, complete genome72127212100%0.099%KF600612.1Select seq gb|KJ361500.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_Sanger, complete genome72117211100%0.099%KJ361500.1Select seq gb|KJ361499.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_HTS, partial genome72117211100%0.099%KJ361499.1Select seq gb|KR011266.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2049/2015, complete genome72097209100%0.099%KR011266.1Select seq gb|KR011264.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2343/2015, complete genome72097209100%0.099%KR011264.1Select seq gb|KR011263.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2345/2015, complete genome72097209100%0.099%KR011263.1Select seq gb|KJ361501.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_IS_HTS, complete genome72097209100%0.099%KJ361501.1Select seq gb|KM027261.1|Middle East respiratory syndrome coronavirus isolate Makkah_C9355/KSA/Makkah/2014-04-15, complete genome72097209100%0.099%KM027261.1Select seq gb|KM027260.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C10306/KSA/2014-04-20, complete genome72097209100%0.099%KM027260.1Select seq gb|KM027259.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C9055/KSA/2014-04-14, complete genome72097209100%0.099%KM027259.1Select seq gb|KM027257.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7770/KSA/2014-04-07, complete genome72097209100%0.099%KM027257.1Select seq gb|KM027256.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7569/KSA/2014-04-03, complete genome72097209100%0.099%KM027256.1Select seq gb|KM027255.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7149/KSA/2014-04-05, complete genome72097209100%0.099%KM027255.1Select seq gb|KM027263.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7058/KSA/2014 spike protein (S) gene, complete cds72097209100%0.099%KM027263.1Select seq gb|KJ650098.1|Middle East respiratory syndrome coronavirus isolate Camel/Qatar_2_2014, complete genome72097209100%0.099%KJ650098.1Select seq gb|KJ713295.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-505, complete genome72097209100%0.099%KJ713295.1Select seq gb|KJ156876.1|Middle East respiratory syndrome coronavirus isolate Taif_2b_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds72097209100%0.099%KJ156876.1Select seq gb|KF745068.1|Middle East respiratory syndrome coronavirus isolate FRA/UAE, complete genome72097209100%0.099%KF745068.1Select seq gb|KF600630.1|Middle East respiratory syndrome coronavirus isolate Buraidah_1_2013, complete genome72097209100%0.099%KF600630.1Select seq gb|KR011265.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2466/2015, complete genome72057205100%0.099%KR011265.1Select seq gb|KJ782549.1|Middle East respiratory syndrome coronavirus strain Greece-Saudi Arabia_2014 S protein (S) gene, complete cds72057205100%0.099%KJ782549.1Select seq gb|KF600613.1|Middle East respiratory syndrome coronavirus isolate Riyadh_3_2013, complete genome72057205100%0.099%KF600613.1Select seq gb|KT121580.1|Middle East respiratory syndrome coronavirus isolate KFMC-1, complete genome72037203100%0.099%KT121580.1Select seq gb|KT121577.1|Middle East respiratory syndrome coronavirus isolate KFMC-2, complete genome72037203100%0.099%KT121577.1Select seq gb|KT121576.1|Middle East respiratory syndrome coronavirus isolate KFMC-6, complete genome72037203100%0.099%KT121576.1Select seq gb|KT121575.1|Middle East respiratory syndrome coronavirus isolate KFMC-4, complete genome72037203100%0.099%KT121575.1Select seq gb|KT121574.1|Middle East respiratory syndrome coronavirus isolate KFMC-9, complete genome72037203100%0.099%KT121574.1Select seq gb|KT121573.1|Middle East respiratory syndrome coronavirus isolate KFMC-3, complete genome72037203100%0.099%KT121573.1Select seq gb|KT121572.1|Middle East respiratory syndrome coronavirus isolate KFMC-5, complete genome72037203100%0.099%KT121572.1Select seq gb|KP223131.1|Middle East respiratory syndrome coronavirus isolate Florida/USA-2_Saudi Arabia_2014, complete genome72037203100%0.099%KP223131.1Select seq gb|KM027262.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_683/KSA/2014, complete genome72037203100%0.099%KM027262.1Select seq gb|KM027258.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C8826/KSA/2014-04-12, complete genome72037203100%0.099%KM027258.1Select seq gb|KM027281.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_158/KSA/2014 spike protein (S) gene, complete cds72037203100%0.099%KM027281.1Select seq gb|KM027278.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_057/KSA/2014 spike protein (S) gene, complete cds72037203100%0.099%KM027278.1Select seq gb|KM027276.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C9313/KSA/2014 spike protein (S) gene, complete cds72037203100%0.099%KM027276.1Select seq gb|KM027275.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C9282/KSA/2014 spike protein (S) gene, complete cds72037203100%0.099%KM027275.1Select seq gb|KM027274.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C8978/KSA/2014 spike protein (S) gene, complete cds72037203100%0.099%KM027274.1Select seq gb|KM027271.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C8237/KSA/2014 spike protein (S) gene, complete cds72037203100%0.099%KM027271.1Select seq gb|KM027270.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7773/KSA/2014 spike protein (S) gene, complete cds72037203100%0.099%KM027270.1Select seq gb|KM027268.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7554/KSA/2014 spike protein (S) gene, complete cds72037203100%0.099%KM027268.1Select seq gb|KJ829365.1|Middle East respiratory syndrome coronavirus strain Florida/USA-2_Saudi Arabia_2014, complete genome72037203100%0.099%KJ829365.1Select seq gb|KJ813439.1|Middle East respiratory syndrome coronavirus strain Indiana/USA-1_Saudi Arabia_2014, complete genome72037203100%0.099%KJ813439.1Select seq gb|KJ713298.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-363, complete genome72037203100%0.099%KJ713298.1Select seq gb|KM027273.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C8965/KSA/2014 spike protein (S) gene, complete cds72027202100%0.099%KM027273.1Select seq gb|KF811036.1|Middle East respiratory syndrome coronavirus strain Tunisia-Qatar_2013 spike protein gene, complete cds72027202100%0.099%KF811036.1Select seq gb|KM210278.1|Middle East respiratory syndrome coronavirus isolate England/3/2013, complete genome72007200100%0.099%KM210278.1Select seq gb|KM015348.1|Middle East respiratory syndrome coronavirus isolate England/2/2013, complete genome72007200100%0.099%KM015348.1Select seq gb|KF600645.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_15_2013, complete genome71967196100%0.099%KF600645.1Select seq gb|KT121578.1|Middle East respiratory syndrome coronavirus isolate KFMC-10, complete genome71947194100%0.099%KT121578.1Select seq gb|KM210277.1|Middle East respiratory syndrome coronavirus isolate England/4/2013, complete genome71947194100%0.099%KM210277.1Select seq gb|KJ713297.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-503, complete genome71947194100%0.099%KJ713297.1Select seq gb|KJ156939.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_27b_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds71947194100%0.099%KJ156939.1Select seq gb|KJ156872.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_26c_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds71947194100%0.099%KJ156872.1Select seq gb|KJ156869.1|Middle East respiratory syndrome coronavirus isolate Riyadh_9_2013, complete genome71947194100%0.099%KJ156869.1Select seq gb|KJ156866.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_25_2013, complete genome71947194100%0.099%KJ156866.1Select seq gb|KF600651.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_18_2013, complete genome71947194100%0.099%KF600651.1Select seq gb|KF600647.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_17_2013, complete genome71947194100%0.099%KF600647.1Select seq gb|KF600644.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_16_2013, complete genome71947194100%0.099%KF600644.1Select seq gb|KF600636.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_11c_2013, partial genome71947194100%0.099%KF600636.1Select seq gb|KF600632.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_19_2013, complete genome71947194100%0.099%KF600632.1Select seq gb|KF600627.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_12_2013, complete genome71947194100%0.099%KF600627.1Select seq gb|KF600623.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_7b_2013, partial genome71947194100%0.099%KF600623.1Select seq gb|KF186565.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_3_2013, complete genome71947194100%0.099%KF186565.1Select seq gb|KF186567.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_1_2013, complete genome71947194100%0.099%KF186567.1Select seq gb|KF186566.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_2_2013, complete genome71947194100%0.099%KF186566.1Select seq gb|KF186564.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_4_2013, complete genome71947194100%0.099%KF186564.1Select seq gb|KT121581.1|Middle East respiratory syndrome coronavirus isolate KFMC-7, complete genome71917191100%0.099%KT121581.1Select seq gb|KT225476.2|Middle East respiratory syndrome coronavirus isolate MERS-CoV/THA/CU/17_06_2015, complete genome71917191100%0.099%KT225476.2Select seq gb|KT026453.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_2959_2015, complete genome71917191100%0.099%KT026453.1Select seq gb|KP209313.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_26_2014, complete genome71917191100%0.099%KP209313.1Select seq gb|KP209309.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_30_2014, complete genome71917191100%0.099%KP209309.1Select seq gb|KP209306.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_8_2014, complete genome71917191100%0.099%KP209306.1Select seq gb|KJ156901.1|Middle East respiratory syndrome coronavirus isolate Riyadh_12b_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds71917191100%0.099%KJ156901.1Select seq gb|KJ156874.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_6_2013, complete genome71917191100%0.099%KJ156874.1Select seq gb|KF600643.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_14b_2013, partial genome71917191100%0.099%KF600643.1Select seq gb|KF600634.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_21_2013, complete genome71917191100%0.099%KF600634.1Select seq gb|KP209308.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_16_2014, complete genome71877187100%0.099%KP209308.1Select seq gb|KT121579.1|Middle East respiratory syndrome coronavirus isolate KFMC-8, complete genome71857185100%0.099%KT121579.1Select seq gb|KP405226.1|Middle East respiratory syndrome coronavirus isolate Al-Ahsa KSA_Camel_C7 spike protein gene, complete cds71857185100%0.099%KP405226.1Select seq gb|KP405225.1|Middle East respiratory syndrome coronavirus isolate Al-Ahsa KSA_Camel_C8 spike protein gene, complete cds71857185100%0.099%KP405225.1Select seq gb|KT156561.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2874_2013, complete genome71857185100%0.099%KT156561.1Select seq gb|KT156560.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2285_2013, complete genome71857185100%0.099%KT156560.1Select seq gb|KT026454.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_4050_2015, complete genome71857185100%0.099%KT026454.1 Link to comment Share on other sites More sharing options...
niman Posted December 19, 2015 Author Report Share Posted December 19, 2015 LOCUS KU201959 5347 bp RNA linear VRL 16-DEC-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate Nigeria-HKU004 ORF1b gene, partial cds. ACCESSION KU201959 VERSION KU201959.1 GI:961442039 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 5347) AUTHORS Chu,D.K., Oladipo,J.O., Perera,R.A., Kuranga,S.A., Chan,S.M., Poon,L.L. and Peiris,M. TITLE Middle East respiratory syndrome coronavirus (MERS-CoV) in dromedary camels in Nigeria, 2015 JOURNAL Euro Surveill. 20 (49), 3 (2015) REFERENCE 2 (bases 1 to 5347) AUTHORS Chu,D.K.W., Oladipo,J.O., Perera,R.A.P.M., Kuranga,S.A., Chan,S.M.S., Poon,L.L.M. and Peiris,M. TITLE Direct Submission JOURNAL Submitted (27-NOV-2015) School of Public Health, The University of Hong Kong, No. 21, Sassoon Road, Pokfulam, Hong Kong SAR COMMENT ##Assembly-Data-START## Assembly Method :: Geneious v. 8.1.7 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..5347 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="Nigeria-HKU004" /host="Camelus dromedarius" /db_xref="taxon:1335626" /country="Nigeria" /collection_date="13-Jan-2015" CDS <1..>5347 /codon_start=3 /product="ORF1b" /protein_id="ALS20356.1" /db_xref="GI:961442040" /translation="NLKYAISAKNRARTVAGVSILSTMTNRQYHQKMLKSMAATRGAT CVIGTTKFYGGWDFMLKTLYKDVDNPHLMGWDYPKCDRAMPNMCRIFASLILARKHGT CCTTRDRFYRLANECAQVLSEYVLCGGGYYVKPGGTSSGDATTAYANSVFNILQATTA NVSALMGANGNKIVDKEVKDMQFDLYVNVYRSTSPDPKFVDKYYAFLNKHFSMMILSD DGVVCYNSDYAAKGYIAGIQNFKETLYYQNNVFMSEAKCWVETDLKKGPHEFCSQHTL YIKDGDDGYFLPYPDPSRILSAGCFVDDIVKTDGTLMVERFVSLAIDAYPLTKHEDIE YQNVFWVYLQYIEKLYKDLTGHMLDSYSVMLCGDNSAKFWEEAFYRDLYSSPTTLQAV GSCVVCHSQTSLRCGTCIRRPFLCCKCCYDHVIATPHKMVLSVSPYVCNAPGCGVSDV TKLYLGGMSYFCVDHRPVCSFPLCANGLVFGLYKNMCTGSPSIVEFNRLATCDWTESG DYTLANTTTEPLKLFAAETLRATEEASKQSYAIATIKEIVGERQLLLVWEAGKSKPPL NRNYVFTGYHITKNSKVQLGEYIFERIDYSDAVSYKSSTTYKLTVGDIFVLTSHSVAT LMAPTIVNQERYVKITGLYPTITVPEEFASHVANFQKSGYSKYVTVQGPPGTGKSHFA IGLAIYYPTARVVYTACSHAAVDALCEKAFKYLNIAKCSRIIPAKARVECYDRFKVNE TNSQYLFSTINALPETSADILVVDEVSMCTNYDLSIINARIKAKHIVYVGDPAQLPAP RTLLTRGTLEPENFNSVTRLMCNLGPDIFLSMCYRCPKEIVSTVSALVYNNKLLAKKE LSGQCFKILYKGNVTHDASSAINRPQLTFVKNFITANPAWSKAVFISPYNSQNAVARS ILGLTTQTVDSSQGSEYQYVIFCQTADTAHANNINRFNVAITRAQKGILCVMTSQALF DSLEFTELSFTNYKLQSQIVTGLFKDCSRETSGLSPAYAPTYVSVDDKYKTSDELCVN LNLPANVPYSRVISRMGFKLDATIPGYPKLFITREEAVRQVRSWIGFDVEGAHASRNA CGTNVPLQLGFSTGVNFVVQPVGVVDTEWGNMLTGIAARPPPGEQFKHLVPLMHKGAA WPIVRRRIVQMLSDTLDKLSDYCTFVCWAHGFELTSASYFCKIGKEQKCCMCNRRAAA YSSPLQSYACWTHSCGYDYVYNPFFVDVQQWGYVGNLATNHDRYCSVHQGAHVASNDA IMTRCLAIHSCFIERVDWDIEYPYISHEKKLNSCCRIVERNVVRAALLAGSFDKVYDI GNPKGIPIVDDPVVDWHYFDAQPLTRKVQQLFYTEDMASSFADGLCLFWNCNVPKYPN NAIVCRFDTRVHSEFNLPGCDGGSLYVNKHAFHTPAYDVSAFRDLKPLPFFYYSTTPC EVHGNGSMIEDIDYVPLKSAVCITACNLGGAVCRKHATEYREYMEAYNLVSASGFRLW CYKTFDIYNLWSTFTKVQGLENIAFNVVKQGHFIGVEGELPVAVVNDKIFTKSGVNDI CMFENKTTLPTNIAFELYAKRAVRSHPDFKFLHNLQADICYKFVLWDYERSNIYGTAT IGVCKYTDIDVNSALNICFDIRDNGSLEKFMSTPNAIFISDRKIKKYPCMVGPDYAYF NGAIIRDSDVVKQPVKFYLYKKVNNEFIDPTECIYTQSRSCSDFLPLSDMEKDFLSFD SDVFIKKYGLEKYAFEHVVYGDFSHTTLGGLHLLIGLYKKQQEGHIIMEEMLKGSS" ORIGIN 1 tgaatctaaa atatgctatt agtgctaaga atagagctcg cactgttgca ggcgtgtcca 61 tacttagcac aatgactaat cgccagtacc atcagaaaat gcttaagtcc atggctgcaa 121 ctcgtggagc gacttgcgtc attggtacta caaagttcta tggtggctgg gatttcatgc 181 ttaaaacatt gtacaaagat gttgataatc cgcatcttat gggttgggat taccctaagt 241 gtgatagagc tatgcctaat atgtgtagaa tcttcgcttc actcatatta gctcgtaaac 301 atggcacttg ttgtactaca agggacagat tttatcgctt ggcaaatgag tgtgctcagg 361 tgctaagcga atatgttcta tgtggtggtg gttactacgt caaacctgga ggtaccagta 421 gcggagatgc caccactgca tatgccaata gtgtctttaa cattttgcag gcgacaactg 481 ctaatgtcag tgcacttatg ggtgctaatg gcaacaagat tgttgacaaa gaagttaaag 541 acatgcagtt tgatttgtat gtcaatgttt acaggagcac tagcccagac cccaaatttg 601 ttgataaata ctatgctttt cttaataagc acttttctat gatgatactg tctgatgacg 661 gtgtcgtttg ctataatagt gattatgcag ctaagggtta cattgctgga atacagaatt 721 ttaaggaaac gctgtattat cagaacaatg tctttatgtc tgaagctaaa tgctgggtgg 781 aaaccgatct gaagaaaggg ccacatgaat tctgttcaca gcatacgctt tatattaagg 841 atggcgacga tggttacttc cttccttatc cagacccttc aagaattttg tctgccggtt 901 gctttgtaga tgacatcgtt aagactgacg gtacactcat ggtagagcgg tttgtgtctt 961 tggctataga tgcttaccct ctcacaaagc atgaagatat agaataccag aatgtattct 1021 gggtctactt acagtatata gaaaaactgt ataaagacct tacaggacac atgcttgaca 1081 gttattctgt catgctatgt ggtgataatt ctgctaagtt ttgggaagag gcattctata 1141 gagatctcta tagttcgcct accactttgc aggctgtcgg ttcatgcgtt gtatgccatt 1201 cacagacttc cttacgctgt gggacatgca tccgtagacc atttctctgt tgtaaatgct 1261 gctatgatca tgttatagca actccacata agatggtttt gtctgtttct ccttacgttt 1321 gtaatgcccc tggttgtggc gtttcagacg ttactaagct atatttaggt ggtatgagct 1381 acttttgtgt agatcataga cctgtgtgta gttttccact ttgcgctaat ggtcttgtat 1441 tcggcttata caagaatatg tgcacaggta gtccttctat agttgaattt aataggttgg 1501 ctacctgtga ctggactgaa agtggtgatt acacccttgc caatactaca acagaaccac 1561 tcaaactttt tgctgctgag actttacgtg ccactgaaga ggcgtctaag cagtcttatg 1621 ctattgccac catcaaagaa attgttggtg agcgccaact attacttgtg tgggaggctg 1681 gcaagtccaa accaccactc aatcgtaatt atgtttttac tggttatcat ataaccaaaa 1741 atagtaaagt gcagctcggt gagtacatct tcgagcgcat tgattatagt gatgctgtat 1801 cctacaagtc tagtacaacg tataaactga ctgtaggtga catcttcgta cttacctctc 1861 actcggtggc taccttgatg gcgcccacaa ttgtgaatca agagaggtat gttaaaatta 1921 ctgggttgta cccaaccatt acggtacctg aagagttcgc aagtcatgtt gccaacttcc 1981 aaaaatcagg ttatagtaaa tatgtcactg ttcagggacc acctggcact ggcaaaagtc 2041 attttgctat agggttagcg atttactacc ctacagcacg tgttgtttat acagcatgtt 2101 cacacgcagc tgttgacgct ttgtgtgaaa aagcttttaa atatttgaac attgctaaat 2161 gttcccgtat cattcctgca aaggcacgtg ttgagtgcta tgacaggttt aaagttaatg 2221 agacaaattc tcaatatttg tttagtacta ttaatgctct accagaaact tctgccgata 2281 ttctggtggt tgatgaggtt agtatgtgca ctaattatga tctttcaatt attaatgcac 2341 gtattaaagc taagcacatt gtctatgtag gagatccagc acagttgcca gctcctagga 2401 ctttgttgac tagaggcaca ttggaaccag aaaatttcaa tagtgtcact agattgatgt 2461 gtaacttagg tcctgacata tttttaagta tgtgctacag gtgtcctaag gaaatagtaa 2521 gcactgtgag tgctcttgtc tacaataata aattgttagc caagaaggag ctttcaggcc 2581 agtgctttaa aatactctat aagggcaatg tgacgcatga tgctagctct gccattaata 2641 gaccacaact cacatttgtg aagaatttta ttactgccaa tccggcatgg agtaaggcag 2701 tctttatttc gccttataat tcacagaatg ctgtggctcg ttcaattctg ggtcttacca 2761 ctcagactgt tgattcctca cagggttcag aataccagta tgttatcttc tgtcaaacag 2821 cagatacggc acatgctaac aacattaaca gatttaatgt tgcaatcact cgtgcccaaa 2881 aaggtattct ttgtgttatg acatctcagg cactctttga ttccttagag tttactgaat 2941 tgtcttttac taattacaag ctccagtctc agattgtaac tggccttttt aaagattgct 3001 ctagagaaac ttctggcctc tcacctgctt atgcaccaac atacgttagt gttgatgaca 3061 agtataagac gagtgatgag ctttgcgtga atcttaattt acccgcaaat gtcccatact 3121 ctcgtgttat ttccaggatg ggctttaaac tcgatgcaac aattcctgga tatcctaagc 3181 ttttcattac tcgtgaagag gctgtaaggc aagttcgaag ctggataggc ttcgatgttg 3241 agggtgctca tgcttcccgt aatgcatgtg gcaccaatgt gcctctacaa ttaggatttt 3301 caactggtgt gaactttgtt gttcagccag ttggtgttgt agacactgag tggggtaaca 3361 tgttaacggg cattgctgcc cgtcctccac caggtgaaca gtttaagcac ctcgtgcctc 3421 ttatgcataa gggggctgca tggcctattg ttagacgacg tatagtgcaa atgttgtccg 3481 acactttaga caaattgtct gattactgta cgtttgtttg ttgggctcat ggctttgaat 3541 taacgtctgc atcatacttt tgcaagatag gtaaggaaca gaagtgttgc atgtgcaata 3601 gacgcgctgc agcgtactct tcacctctgc aatcttatgc ctgctggact cattcctgcg 3661 gttatgatta tgtctacaac cctttctttg tcgatgttca acagtggggt tatgtaggca 3721 atcttgctac taatcacgat cgttattgct ctgtccatca aggagctcat gtggcttcta 3781 atgatgcaat aatgactcgt tgtttagcta ttcattcttg ttttatagaa cgtgtggatt 3841 gggatataga gtatccttat atctcacatg aaaagaaatt gaattcctgt tgtagaatcg 3901 ttgagcgcaa cgtcgtacgt gctgctcttc ttgccggttc atttgacaaa gtctatgata 3961 ttggcaatcc taaaggaatt cctattgttg atgaccctgt ggttgattgg cattattttg 4021 atgcacagcc cttgaccagg aaggtacaac agcttttcta tacagaggac atggcctcaa 4081 gttttgctga tgggctctgc ttattttgga actgtaatgt accaaaatat cctaataatg 4141 caattgtatg caggtttgac acacgtgtgc attctgagtt caatttgcca ggttgtgatg 4201 gcggtagttt gtatgttaac aagcacgctt ttcatacacc agcatatgat gtgagtgcat 4261 tccgtgatct gaaaccttta ccattctttt attattctac tacaccatgt gaagtgcatg 4321 gtaatggtag tatgatagag gatattgatt atgtacccct aaaatctgca gtctgtatta 4381 cagcttgtaa tttagggggc gctgtttgta ggaagcatgc tacagagtac agagagtata 4441 tggaagcata taatcttgtc tctgcatcag gtttccgcct ttggtgttat aagacctttg 4501 atatttataa tctctggtct acttttacaa aagttcaagg tttggaaaac attgctttta 4561 atgttgttaa acaaggccat tttattggtg ttgagggtga actacctgta gctgtagtca 4621 atgataagat cttcaccaag agtggcgtta atgacatttg tatgtttgag aataaaacca 4681 ctttgcctac taatatagct tttgaactct atgctaagcg tgccgtacgc tcgcatcccg 4741 atttcaaatt tctacacaat ttacaagcag acatttgtta taagttcgtc ctttgggatt 4801 atgaacgtag caatatttat ggtactgcta ctattggtgt atgtaagtac actgatattg 4861 atgttaattc agctttgaat atatgttttg acatacgcga taatggttca ttggagaaat 4921 tcatgtctac tcccaatgcc atctttattt ctgatagaaa aatcaagaaa tacccttgta 4981 tggtaggtcc tgattatgct tacttcaatg gtgctatcat ccgtgatagt gatgttgtta 5041 aacaaccagt gaagttctac ttgtataaga aagtcaataa tgagtttatt gatcctactg 5101 agtgtattta cactcagagt cgctcttgta gtgacttcct acccctgtct gacatggaga 5161 aagactttct atcttttgat agtgatgttt tcattaagaa gtatggcttg gaaaaatatg 5221 cttttgagca cgtagtctat ggagacttct ctcatactac gttaggcggt cttcacttgc 5281 ttattggttt atacaagaag caacaggaag gtcatattat tatggaagaa atgctaaaag 5341 gtagctc Link to comment Share on other sites More sharing options...
niman Posted December 19, 2015 Author Report Share Posted December 19, 2015 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KJ713298.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-363, complete genome95489548100%0.099%KJ713298.1Select seq gb|KJ713296.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-378, complete genome95449544100%0.099%KJ713296.1Select seq gb|KJ156942.1|Middle East respiratory syndrome coronavirus isolate Riyadh_8b_2013, partial genome95449544100%0.099%KJ156942.1Select seq gb|KJ156910.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_2_2013, complete genome95449544100%0.099%KJ156910.1Select seq gb|KJ156874.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_6_2013, complete genome95449544100%0.099%KJ156874.1Select seq gb|KF600652.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2_2012, complete genome95449544100%0.099%KF600652.1Select seq gb|KF600630.1|Middle East respiratory syndrome coronavirus isolate Buraidah_1_2013, complete genome95449544100%0.099%KF600630.1Select seq gb|KF600628.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_1_2013, complete genome95449544100%0.099%KF600628.1Select seq gb|KF192507.1|Middle East respiratory syndrome coronavirus, complete genome95449544100%0.099%KF192507.1Select seq gb|KM210277.1|Middle East respiratory syndrome coronavirus isolate England/4/2013, complete genome95399539100%0.099%KM210277.1Select seq gb|KP223131.1|Middle East respiratory syndrome coronavirus isolate Florida/USA-2_Saudi Arabia_2014, complete genome95399539100%0.099%KP223131.1Select seq gb|KM027261.1|Middle East respiratory syndrome coronavirus isolate Makkah_C9355/KSA/Makkah/2014-04-15, complete genome95399539100%0.099%KM027261.1Select seq gb|KM027259.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C9055/KSA/2014-04-14, complete genome95399539100%0.099%KM027259.1Select seq gb|KM027258.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C8826/KSA/2014-04-12, complete genome95399539100%0.099%KM027258.1Select seq gb|KM027256.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7569/KSA/2014-04-03, complete genome95399539100%0.099%KM027256.1Select seq gb|KM027255.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7149/KSA/2014-04-05, complete genome95399539100%0.099%KM027255.1Select seq gb|KM015348.1|Middle East respiratory syndrome coronavirus isolate England/2/2013, complete genome95399539100%0.099%KM015348.1Select seq gb|KJ829365.1|Middle East respiratory syndrome coronavirus strain Florida/USA-2_Saudi Arabia_2014, complete genome95399539100%0.099%KJ829365.1Select seq gb|KJ477102.1|Middle East respiratory syndrome coronavirus, complete genome95399539100%0.099%KJ477102.1Select seq gb|KJ156916.1|Middle East respiratory syndrome coronavirus isolate Madinah_3b_2013, partial genome95399539100%0.099%KJ156916.1Select seq gb|KJ156952.1|Middle East respiratory syndrome coronavirus isolate Riyadh_4_2013, complete genome95399539100%0.099%KJ156952.1Select seq gb|KJ156881.1|Middle East respiratory syndrome coronavirus isolate Wadi-Ad-Dawasir_1_2013, complete genome95399539100%0.099%KJ156881.1Select seq gb|KJ156866.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_25_2013, complete genome95399539100%0.099%KJ156866.1Select seq gb|KF961222.1|Middle East respiratory syndrome coronavirus isolate Qatar4, complete genome95399539100%0.099%KF961222.1Select seq gb|KF600651.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_18_2013, complete genome95399539100%0.099%KF600651.1Select seq gb|KF600636.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_11c_2013, partial genome95399539100%0.099%KF600636.1Select seq gb|KF600634.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_21_2013, complete genome95399539100%0.099%KF600634.1Select seq gb|KF600627.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_12_2013, complete genome95399539100%0.099%KF600627.1Select seq gb|KF186565.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_3_2013, complete genome95399539100%0.099%KF186565.1Select seq gb|KF186567.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_1_2013, complete genome95399539100%0.099%KF186567.1Select seq gb|KF186566.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_2_2013, complete genome95399539100%0.099%KF186566.1Select seq gb|KF186564.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_4_2013, complete genome95399539100%0.099%KF186564.1Select seq gb|KM210278.1|Middle East respiratory syndrome coronavirus isolate England/3/2013, complete genome95379537100%0.099%KM210278.1Select seq gb|KT121581.1|Middle East respiratory syndrome coronavirus isolate KFMC-7, complete genome95359535100%0.099%KT121581.1Select seq gb|KT121580.1|Middle East respiratory syndrome coronavirus isolate KFMC-1, complete genome95359535100%0.099%KT121580.1Select seq gb|KT121579.1|Middle East respiratory syndrome coronavirus isolate KFMC-8, complete genome95359535100%0.099%KT121579.1Select seq gb|KT121577.1|Middle East respiratory syndrome coronavirus isolate KFMC-2, complete genome95359535100%0.099%KT121577.1Select seq gb|KT121576.1|Middle East respiratory syndrome coronavirus isolate KFMC-6, complete genome95359535100%0.099%KT121576.1Select seq gb|KT121575.1|Middle East respiratory syndrome coronavirus isolate KFMC-4, complete genome95359535100%0.099%KT121575.1Select seq gb|KT121574.1|Middle East respiratory syndrome coronavirus isolate KFMC-9, complete genome95359535100%0.099%KT121574.1Select seq gb|KT121573.1|Middle East respiratory syndrome coronavirus isolate KFMC-3, complete genome95359535100%0.099%KT121573.1Select seq gb|KT121572.1|Middle East respiratory syndrome coronavirus isolate KFMC-5, complete genome95359535100%0.099%KT121572.1Select seq gb|KT156560.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2285_2013, complete genome95359535100%0.099%KT156560.1Select seq gb|KM027257.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C7770/KSA/2014-04-07, complete genome95359535100%0.099%KM027257.1Select seq gb|KJ650098.1|Middle East respiratory syndrome coronavirus isolate Camel/Qatar_2_2014, complete genome95359535100%0.099%KJ650098.1Select seq gb|KJ713297.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-503, complete genome95359535100%0.099%KJ713297.1Select seq gb|KJ614529.1|Human betacoronavirus 2c Jordan-N3/2012 isolate MG167, complete genome95359535100%0.099%KJ614529.1Select seq gb|KF917527.1|Middle East respiratory syndrome coronavirus isolate MERS-CoV-Jeddah-Camel-1, complete genome95359535100%0.099%KF917527.1Select seq gb|KJ156941.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_26b_2013 ORF1ab gene, partial cds95359535100%0.099%KJ156941.1Select seq gb|KJ156949.1|Middle East respiratory syndrome coronavirus isolate Taif_1_2013, complete genome95359535100%0.099%KJ156949.1Select seq gb|KJ156944.1|Middle East respiratory syndrome coronavirus isolate Riyadh_5_2013, complete genome95359535100%0.099%KJ156944.1Select seq gb|KJ156869.1|Middle East respiratory syndrome coronavirus isolate Riyadh_9_2013, complete genome95359535100%0.099%KJ156869.1Select seq gb|KF600645.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_15_2013, complete genome95359535100%0.099%KF600645.1Select seq gb|KF600644.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_16_2013, complete genome95359535100%0.099%KF600644.1Select seq gb|KF600632.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_19_2013, complete genome95359535100%0.099%KF600632.1Select seq gb|KF600613.1|Middle East respiratory syndrome coronavirus isolate Riyadh_3_2013, complete genome95359535100%0.099%KF600613.1Select seq gb|KC164505.2|Betacoronavirus England 1, complete genome95359535100%0.099%KC164505.2Select seq gb|KC776174.1|Human betacoronavirus 2c Jordan-N3/2012, complete genome95359535100%0.099%KC776174.1Select seq gb|KC667074.1|Human betacoronavirus 2c England-Qatar/2012, complete genome95359535100%0.099%KC667074.1Select seq gb|KF600643.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_14b_2013, partial genome95339533100%0.099%KF600643.1Select seq gb|KF961221.1|Middle East respiratory syndrome coronavirus isolate Qatar3, complete genome95329532100%0.099%KF961221.1Select seq gb|KT121578.1|Middle East respiratory syndrome coronavirus isolate KFMC-10, complete genome95309530100%0.099%KT121578.1Select seq gb|KT029139.1|Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/KNIH/002_05_2015, complete genome95309530100%0.099%KT029139.1Select seq gb|KJ361503.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_Isolate_Sanger, complete genome95309530100%0.099%KJ361503.1Select seq gb|KJ361502.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_InSpu_Sanger, complete genome95309530100%0.099%KJ361502.1Select seq gb|KJ361500.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_Sanger, complete genome95309530100%0.099%KJ361500.1Select seq gb|KJ361499.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_HTS, partial genome95309530100%0.099%KJ361499.1Select seq gb|KP209312.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_9_2013, complete genome95309530100%0.099%KP209312.1Select seq gb|KM027260.1|Middle East respiratory syndrome coronavirus isolate Jeddah_C10306/KSA/2014-04-20, complete genome95309530100%0.099%KM027260.1Select seq gb|KJ713295.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-505, complete genome95309530100%0.099%KJ713295.1Select seq gb|KJ650297.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 1, complete genome95309530100%0.099%KJ650297.1Select seq gb|KJ650296.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 19Dam, complete genome95309530100%0.099%KJ650296.1Select seq gb|KJ650295.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 13, complete genome95309530100%0.099%KJ650295.1Select seq gb|KJ156934.1|Middle East respiratory syndrome coronavirus isolate Riyadh_14_2013, complete genome95309530100%0.099%KJ156934.1Select seq gb|KF600647.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_17_2013, complete genome95309530100%0.099%KF600647.1Select seq gb|KF600612.1|Middle East respiratory syndrome coronavirus isolate Riyadh_1_2012, complete genome95309530100%0.099%KF600612.1Select seq gb|KT374057.1|Middle East respiratory syndrome coronavirus isolate KOREA/Seoul/168-2-2015, complete genome95269526100%0.099%KT374057.1Select seq gb|KT374056.1|Middle East respiratory syndrome coronavirus isolate KOREA/Seoul/168-1-2015, complete genome95269526100%0.099%KT374056.1Select seq gb|KT374055.1|Middle East respiratory syndrome coronavirus isolate KOREA/Seoul/035-2-2015, complete genome95269526100%0.099%KT374055.1Select seq gb|KT374054.1|Middle East respiratory syndrome coronavirus isolate KOREA/Seoul/035-1-2015, complete genome95269526100%0.099%KT374054.1Select seq gb|KT374052.1|Middle East respiratory syndrome coronavirus isolate KOREA/Seoul/014-1-2015, complete genome95269526100%0.099%KT374052.1Select seq gb|KT374051.1|Middle East respiratory syndrome coronavirus isolate KOREA/Seoul/163-1-2015, complete genome95269526100%0.099%KT374051.1Select seq gb|KT374050.1|Middle East respiratory syndrome coronavirus isolate KOREA/Seoul/163-2-2015, complete genome95269526100%0.099%KT374050.1Select seq gb|KT156561.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2874_2013, complete genome95269526100%0.099%KT156561.1Select seq gb|KT036374.1|Middle East respiratory syndrome coronavirus isolate ChinaGD01 variant 2, partial genome95269526100%0.099%KT036374.1Select seq gb|KT036373.1|Middle East respiratory syndrome coronavirus isolate ChinaGD01 variant 1, partial genome95269526100%0.099%KT036373.1Select seq gb|KT036372.1|Middle East respiratory syndrome coronavirus isolate ChinaGD01, partial genome95269526100%0.099%KT036372.1Select seq gb|KT006149.2|Middle East respiratory syndrome coronavirus strain ChinaGD01, complete genome95269526100%0.099%KT006149.2Select seq gb|KJ361501.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_IS_HTS, complete genome95269526100%0.099%KJ361501.1Select seq gb|KP209313.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_26_2014, complete genome95269526100%0.099%KP209313.1Select seq gb|KP209309.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_30_2014, complete genome95269526100%0.099%KP209309.1Select seq gb|KP209307.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_18_2014, complete genome95269526100%0.099%KP209307.1Select seq gb|KP209306.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_8_2014, complete genome95269526100%0.099%KP209306.1Select seq gb|KJ813439.1|Middle East respiratory syndrome coronavirus strain Indiana/USA-1_Saudi Arabia_2014, complete genome95269526100%0.099%KJ813439.1Select seq gb|KF745068.1|Middle East respiratory syndrome coronavirus isolate FRA/UAE, complete genome95269526100%0.099%KF745068.1Select seq gb|KJ556336.1|Middle East respiratory syndrome coronavirus isolate Jeddah_1_2013, complete genome95239523100%0.099%KJ556336.1Select seq gb|KT374053.1|Middle East respiratory syndrome coronavirus isolate KOREA/Seoul/014-2-2015, complete genome95219521100%0.099%KT374053.1Select seq gb|KT026453.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_2959_2015, complete genome95219521100%0.099%KT026453.1Select seq gb|KP719933.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1209/2014, complete genome95219521100%0.099%KP719933.1Select seq gb|KP719932.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1243.12/2014, complete genome95219521100%0.099%KP719932.1 Link to comment Share on other sites More sharing options...
Recommended Posts
Please sign in to comment
You will be able to leave a comment after signing in
Sign In Now