Miami Wynwood and Miami Beach Florida Zika Cases Linked

[niman]

Last week the Andersen Lab at Scripps http://andersen-lab.com/ released a series of sequences from 2 patients and 3 mosquito batches collected in Miami.  These data indicated all five sequences fell on the same branch of a phylogenetic tree which was shared by sequences from an English traveler to Guadeloupe and an Italian traveler to the Dominican Republic (see tree posted below).

The lab is preparing to release another series, and has posted the sequence data on their website.  Included are six full Zika sequences from collections between July 16 and August 17.  The July collections (ZF 21 and ZF 22) are likely sequences from Wynwood, based on descriptions of local Florida cases.  

All six of the sequences in progress fall on the same branch as the five sequences deposited at Genbank (see second tree posted below), raising concerns of an introduction into Florida that significantly pre-dates Wynwood..  

 

Edited September 24, 2016 by niman

[niman]

Initial branch with five Miami sequences at Genbank

[niman]

Updated tree with Wynwood sequences

[niman]

LOCUS       KX838904               10524 bp    RNA     linear   VRL 22-SEP-2016
DEFINITION  Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein
            gene, complete cds.
ACCESSION   KX838904
VERSION     KX838904.1  GI:1063797021
DBLINK      BioProject: PRJNA342539
            BioSample: SAMN05761900
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10524)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10524)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V3.04
            Coverage              :: 160,000
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10524
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Aedes_aegypti/USA/2016/ZM1-7501"
                     /isolation_source="pool of 39 adult mosquitoes"
                     /host="Aedes aegypti"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="22-Aug-2016"

[niman]

LOCUS       KX838905               10475 bp    RNA     linear   VRL 22-SEP-2016
DEFINITION  Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein
            gene, complete cds.
ACCESSION   KX838905
VERSION     KX838905.1  GI:1063797023
DBLINK      BioProject: PRJNA342539
            BioSample: SAMN05761899
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10475)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10475)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V3.04
            Coverage              :: 160,000
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10475
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Aedes_aegypti/USA/2016/ZM2-7719"
                     /isolation_source="pool of 25 adult mosquitoes"
                     /host="Aedes aegypti"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="23-Aug-2016"

[niman]

LOCUS       KX838906               10610 bp    RNA     linear   VRL 22-SEP-2016
DEFINITION  Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein
            gene, complete cds.
ACCESSION   KX838906
VERSION     KX838906.1  GI:1063797025
DBLINK      BioProject: PRJNA342539
            BioSample: SAMN05761898
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10610)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10610)
  AUTHORS   Grubaugh,N., Paul,L., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Michael,S., Isern,S. and Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V3.04
            Coverage              :: 160,000
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10610
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Aedes_aegypti/USA/2016/ZM3-7729"
                     /isolation_source="pool of 15 adult mosquitoes"
                     /host="Aedes aegypti"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="23-Aug-2016"

[niman]

LOCUS       KX842449               10388 bp    RNA     linear   VRL 22-SEP-2016
DEFINITION  Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein
            gene, complete cds.
ACCESSION   KX842449
VERSION     KX842449.1  GI:1063906997
DBLINK      BioProject: PRJNA342539
            BioSample: SAMN05792872
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10388)
  AUTHORS   Grubaugh,N., Tan,A., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Cone,M., Kopp,E., Hogan,K., Cannons,A.,
            Michael,S., Isern,S. and Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10388)
  AUTHORS   Grubaugh,N., Tan,A., Gangavarupu,K., Oliveira,G.,
            Robles-Sikisaka,R., Cone,M., Kopp,E., Hogan,K., Cannons,A.,
            Michael,S., Isern,S. and Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V3.04
            Coverage              :: 80,000
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10388
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Human/USA/2016/ZF10.UR-010"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="22-Jun-2016"
                     /note="direct clinical sequencing; person returned from
                     Cuba 21 days prior to sample collection, but infection may
                     have occurred in Miami"

[niman]

LOCUS       KX832731               10467 bp    RNA     linear   VRL 22-SEP-2016
DEFINITION  Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein
            gene, complete cds.
ACCESSION   KX832731
VERSION     KX832731.1  GI:1063797019
DBLINK      BioProject: PRJNA342539
            BioSample: SAMN05761901
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10467)
  AUTHORS   Grubaugh,N., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R.,
            Watkins,D., Lichtenberger,P., Ricciardi,M., Bailey,V., Magnani,D.
            and Andersen,K.
  TITLE     Zika virus sequences from Florida, USA, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10467)
  AUTHORS   Grubaugh,N., Gangavarupu,K., Oliveira,G., Robles-Sikisaka,R.,
            Watkins,D., Lichtenberger,P., Ricciardi,M., Bailey,V., Magnani,D.
            and Andersen,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-SEP-2016) Department of Immunology and Microbial
            Science, The Scripps Research Institute, 10550 North Torrey Pines
            Road, IMM-210, La Jolla, CA 92037, USA
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: NovoAlign v. V2
            Sequencing Technology :: Illumina
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10467
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="ZIKV/Human/USA/2016/ZL2.SA-Hu0015"
                     /isolation_source="saliva"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="USA: Miami, Florida"
                     /collection_date="24-Aug-2016"
                     /note="direct clinical sequencing"

[niman]

Discussion of new Zika sequences

http://recombinomics.co/thedrnimanshow/2016/09/092416.mp3

[niman]

ZF32_32U|XX|2016-08-05 matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18493	18493	100%	0.0	99%	KX838906.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18429	18429	100%	0.0	99%	KX673530.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18426	18426	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18424	18424	100%	0.0	99%	KU853012.1
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18417	18417	100%	0.0	99%	KX842449.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18411	18411	100%	0.0	99%	KX838905.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18408	18408	100%	0.0	99%	KX838904.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18408	18408	100%	0.0	99%	KX832731.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18330	18330	100%	0.0	99%	KX280026.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU729217.2
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18327	18327	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18327	18327	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18321	18321	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU991811.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18312	18312	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18312	18312	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KX447511.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18312	18312	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU365779.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18312	18312	100%	0.0	99%	KU321639.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KX447514.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18309	18309	100%	0.0	99%	KX262887.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18309	18309	100%	0.0	99%	KX051563.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18309	18309	100%	0.0	99%	KU926309.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU729218.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18303	18303	100%	0.0	99%	KU527068.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18300	18300	100%	0.0	99%	KX694534.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18300	18300	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18300	18300	100%	0.0	99%	KU926310.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18294	18294	100%	0.0	99%	KU940228.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU365777.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU758877.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KX247632.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18291	18291	100%	0.0	99%	KX198135.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KU647676.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18282	18282	100%	0.0	99%	KX856011.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KX447517.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18282	18282	100%	0.0	99%	KX446951.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18282	18282	100%	0.0	99%	KX247646.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18282	18282	100%	0.0	99%	KX156776.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18282	18282	100%	0.0	99%	KU501215.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU312312.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18278	18278	99%	0.0	99%	KU497555.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18276	18276	100%	0.0	99%	KX601168.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KX520666.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18276	18276	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18276	18276	100%	0.0	99%	KX087101.2
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18276	18276	100%	0.0	99%	KX156774.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU820897.5
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18273	18273	100%	0.0	99%	KX377337.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU937936.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18273	18273	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18273	18273	100%	0.0	99%	KX087102.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18267	18267	100%	0.0	99%	KU870645.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18267	18267	100%	0.0	99%	KU922960.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18264	18264	100%	0.0	99%	KX806557.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18264	18264	100%	0.0	99%	KX766029.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18264	18264	100%	0.0	99%	KX548902.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18264	18264	100%	0.0	99%	KU922923.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18254	18254	100%	0.0	99%	KX702400.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18254	18254	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18247	18247	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18231	18231	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18222	18222	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18222	18222	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18218	18218	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18218	18218	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18218	18218	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18215	18215	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18213	18213	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18200	18200	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18087	18087	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18074	18074	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18060	18060	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18015	18015	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17894	17894	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17699	17699	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17699	17699	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17661	17661	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17553	17553	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17407	17407	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16388	16388	100%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16379	16379	100%	0.0	95%	KX694533.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16379	16379	99%	0.0	95%	HQ234499.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	16374	16374	100%	0.0	95%	KX377336.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	16190	16190	88%	0.0	99%	KX447518.1

Edited September 24, 2016 by niman

[niman]

ZF21_21U|XX|2016-07-19 matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18498	18498	100%	0.0	99%	KX842449.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18493	18493	100%	0.0	99%	KX838905.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18489	18489	100%	0.0	99%	KX832731.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18480	18480	100%	0.0	99%	KX838904.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18444	18444	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18442	18442	100%	0.0	99%	KU853012.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18420	18420	100%	0.0	99%	KX673530.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18411	18411	100%	0.0	99%	KX838906.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18348	18348	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18345	18345	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18345	18345	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18339	18339	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18330	18330	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18330	18330	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447511.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18330	18330	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU365779.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18330	18330	100%	0.0	99%	KU321639.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447514.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18327	18327	100%	0.0	99%	KX262887.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18327	18327	100%	0.0	99%	KX051563.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18327	18327	100%	0.0	99%	KU926309.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU729218.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18321	18321	100%	0.0	99%	KU527068.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18318	18318	100%	0.0	99%	KX694534.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18318	18318	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18318	18318	100%	0.0	99%	KU926310.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18312	18312	100%	0.0	99%	KU940228.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU365777.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU758877.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18309	18309	100%	0.0	99%	KX198135.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU647676.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX447517.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18300	18300	100%	0.0	99%	KX247646.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX247632.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18300	18300	100%	0.0	99%	KX156776.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18300	18300	100%	0.0	99%	KU501215.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU312312.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18296	18296	99%	0.0	99%	KU497555.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18294	18294	100%	0.0	99%	KX601168.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KX520666.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18294	18294	100%	0.0	99%	KX087101.2
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18294	18294	100%	0.0	99%	KX156774.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18291	18291	100%	0.0	99%	KX856011.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU820897.5
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18291	18291	100%	0.0	99%	KX446951.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18291	18291	100%	0.0	99%	KX377337.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KU937936.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18291	18291	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18291	18291	100%	0.0	99%	KX087102.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18285	18285	100%	0.0	99%	KX446950.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18285	18285	100%	0.0	99%	KU870645.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18285	18285	100%	0.0	99%	KU922960.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18282	18282	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KX548902.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18282	18282	100%	0.0	99%	KU922923.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18273	18273	100%	0.0	99%	KX766029.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18273	18273	100%	0.0	99%	KX702400.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18267	18267	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18267	18267	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18265	18265	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18264	18264	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18264	18264	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18249	18249	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18236	18236	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18236	18236	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18236	18236	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18233	18233	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18231	18231	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18218	18218	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18105	18105	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18083	18083	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18069	18069	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18015	18015	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17894	17894	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17708	17708	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17708	17708	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17661	17661	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17553	17553	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17407	17407	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16379	16379	100%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16370	16370	100%	0.0	95%	KX694533.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16370	16370	99%	0.0	95%	HQ234499.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	16365	16365	100%	0.0	95%	KX377336.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	16202	16202	88%	0.0	99%	KX447518.1

[niman]

ZF22_22U|XX|2016-07-16 matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	17454	18355	99%	0.0	99%	KX842449.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	17445	18341	99%	0.0	99%	KX838905.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	17445	18346	99%	0.0	99%	KX832731.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	17436	18337	99%	0.0	99%	KX838904.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	17416	18319	99%	0.0	99%	KU853012.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	17414	18319	99%	0.0	99%	KU853013.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	17387	18288	99%	0.0	99%	KX673530.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	17373	18277	99%	0.0	99%	KX838906.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	17324	18229	99%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	17319	18223	99%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	17315	18220	99%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	17315	18220	99%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	17315	18220	99%	0.0	99%	KU509998.3
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	17315	18216	99%	0.0	99%	KU991811.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	17310	18214	99%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	17310	18214	99%	0.0	99%	KX447509.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	17310	18214	99%	0.0	99%	KU729217.2
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	17306	18207	99%	0.0	99%	KX197205.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	17306	18211	99%	0.0	99%	KX447513.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	17306	18207	99%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	17306	18207	99%	0.0	99%	KU365779.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	17301	18205	99%	0.0	99%	KX811222.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	17301	18205	99%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	17301	18205	99%	0.0	99%	KX447511.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	17301	18202	99%	0.0	99%	KU926309.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	17301	18205	99%	0.0	99%	KU321639.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	17297	18202	99%	0.0	99%	KX447514.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	17297	18202	99%	0.0	99%	KX262887.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	17297	18202	99%	0.0	99%	KX051563.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	17291	18196	99%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	17291	18196	99%	0.0	99%	KU729218.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	17291	18196	99%	0.0	99%	KU527068.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	17288	18193	99%	0.0	99%	KX694534.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	17288	18189	99%	0.0	99%	KX198135.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	17288	18193	99%	0.0	99%	KX197192.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	17288	18189	99%	0.0	99%	KU940228.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	17288	18193	99%	0.0	99%	KU926310.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	17288	18193	99%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	17288	18193	99%	0.0	99%	KU365780.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	17288	18189	99%	0.0	99%	KU365777.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	17282	18184	99%	0.0	99%	KU758877.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	17282	18187	99%	0.0	99%	KU501216.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	17279	18175	99%	0.0	99%	KX156776.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	17279	18180	99%	0.0	99%	KU647676.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	17273	18169	99%	0.0	99%	KX156774.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	17273	18171	99%	0.0	99%	KU497555.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	17273	18175	99%	0.0	99%	KU365778.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	17270	18175	99%	0.0	99%	KX447517.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	17270	18171	99%	0.0	99%	KX520666.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	17270	18175	99%	0.0	99%	KX247646.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	17270	18175	99%	0.0	99%	KX247632.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	17270	18166	99%	0.0	99%	KX156775.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	17270	18175	99%	0.0	99%	KU312312.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	17264	18166	99%	0.0	99%	KU820897.5
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	17264	18166	99%	0.0	99%	KX087102.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	17261	18166	99%	0.0	99%	KX856011.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	17261	18157	99%	0.0	99%	KX548902.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	17261	18166	99%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	17261	18166	99%	0.0	99%	KU937936.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	17261	18162	99%	0.0	99%	KU922960.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	17261	18166	99%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	17255	18160	99%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	17255	18160	99%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	17255	18160	99%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	17255	18160	99%	0.0	99%	KU870645.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	17255	18157	99%	0.0	99%	KU922923.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	17252	18157	99%	0.0	99%	KX806557.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	17252	18157	99%	0.0	99%	KX377337.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	17252	18148	99%	0.0	99%	KU955590.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	17246	18148	99%	0.0	99%	KX056898.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	17246	18151	99%	0.0	99%	KU820898.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	17245	18146	99%	0.0	99%	KX766028.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	17243	18148	99%	0.0	99%	KX766029.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	17243	18148	99%	0.0	99%	KX702400.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	17243	18144	99%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	17243	18144	99%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	17219	18124	99%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	17210	18115	99%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	17210	18115	99%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	17207	18112	99%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	17207	18112	99%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	17207	18112	99%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	17203	18108	99%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	17201	18106	99%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	17192	18093	98%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	17084	17980	99%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	17071	17964	99%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	17057	17949	99%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	16999	17882	99%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	16886	17763	99%	0.0	99%	KX694532.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	16722	17574	99%	0.0	98%	JN860885.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	16720	17576	99%	0.0	98%	KU955593.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	16686	17533	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	16550	17419	99%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	16444	17282	99%	0.0	98%	KU681082.3
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	16199	16199	88%	0.0	99%	KX447518.1
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	15452	16272	99%	0.0	95%	KX601167.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	15447	16265	99%	0.0	95%	HQ234499.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	15443	16263	99%	0.0	95%	KX694533.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	15443	16263	99%	0.0	95%	KX377336.1

Edited September 24, 2016 by niman

[niman]

ZF30_30U|XX|2016-08-02 matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18489	18489	100%	0.0	99%	KX842449.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18480	18480	100%	0.0	99%	KX832731.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18474	18474	100%	0.0	99%	KX838905.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18471	18471	100%	0.0	99%	KX838904.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18444	18444	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18442	18442	100%	0.0	99%	KU853012.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18411	18411	100%	0.0	99%	KX673530.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18402	18402	100%	0.0	99%	KX838906.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18363	18363	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18357	18357	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18354	18354	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18354	18354	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18354	18354	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18348	18348	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18339	18339	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18339	18339	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447511.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18339	18339	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KU365779.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18339	18339	100%	0.0	99%	KU321639.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447514.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18336	18336	100%	0.0	99%	KX262887.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18336	18336	100%	0.0	99%	KX051563.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18336	18336	100%	0.0	99%	KU926309.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU729218.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18330	18330	100%	0.0	99%	KU527068.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18327	18327	100%	0.0	99%	KX694534.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18327	18327	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18327	18327	100%	0.0	99%	KU926310.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU501217.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18321	18321	100%	0.0	99%	KU940228.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU501216.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU365777.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU758877.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18318	18318	100%	0.0	99%	KX198135.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU647676.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KX447517.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18309	18309	100%	0.0	99%	KX247646.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KX247632.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18309	18309	100%	0.0	99%	KX156776.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU312312.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18305	18305	99%	0.0	99%	KU497555.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18303	18303	100%	0.0	99%	KX156774.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18300	18300	100%	0.0	99%	KX856011.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU820897.5
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18300	18300	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KU937936.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18300	18300	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18300	18300	100%	0.0	99%	KX087102.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18300	18300	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18294	18294	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18294	18294	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18294	18294	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18294	18294	100%	0.0	99%	KU870645.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18294	18294	100%	0.0	99%	KU922960.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18291	18291	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18291	18291	100%	0.0	99%	KX548902.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18291	18291	100%	0.0	99%	KX377337.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18291	18291	100%	0.0	99%	KU922923.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18282	18282	100%	0.0	99%	KX766029.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18282	18282	100%	0.0	99%	KX702400.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18282	18282	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18274	18274	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18258	18258	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18249	18249	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18245	18245	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18245	18245	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18242	18242	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18227	18227	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18114	18114	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18083	18083	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18069	18069	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18015	18015	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17894	17894	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17708	17708	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17708	17708	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17661	17661	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17553	17553	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17407	17407	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16379	16379	100%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16370	16370	100%	0.0	95%	KX694533.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16370	16370	99%	0.0	95%	HQ234499.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	16365	16365	100%	0.0	95%	KX377336.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	16199	16199	88%	0.0	99%	KX447518.1

[niman]

ZF36_36S|XX|2016-08-04 matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	15086	17263	94%	0.0	99%	KX842449.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	15081	17257	94%	0.0	99%	KX832731.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	15077	17254	94%	0.0	99%	KX838905.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	15072	17243	94%	0.0	99%	KX838904.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	15046	17220	94%	0.0	99%	KU853012.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	15044	17221	94%	0.0	99%	KU853013.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	15017	17189	94%	0.0	99%	KX673530.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	15005	17182	94%	0.0	99%	KX838906.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	14987	17160	94%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	14987	17169	94%	0.0	99%	KX280026.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	14978	17151	94%	0.0	99%	KX811222.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	14978	17155	94%	0.0	99%	KX369547.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	14972	17149	94%	0.0	99%	KX447512.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	14972	17149	94%	0.0	99%	KU509998.3
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	14969	17146	94%	0.0	99%	KX197205.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	14969	17146	94%	0.0	99%	KJ776791.2
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	14969	17151	94%	0.0	99%	KU991811.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	14969	17142	94%	0.0	99%	KU321639.1
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	14963	17146	94%	0.0	99%	KX447509.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	14963	17126	94%	0.0	99%	KX198135.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	14963	17128	94%	0.0	99%	KU729218.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	14960	17137	94%	0.0	99%	KX447515.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	14960	17142	94%	0.0	99%	KX447513.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	14954	17137	94%	0.0	99%	KX447516.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	14954	17137	94%	0.0	99%	KX447511.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	14954	17128	94%	0.0	99%	KX197192.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	14954	17126	94%	0.0	99%	KU926309.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	14954	17137	94%	0.0	99%	KU729217.2
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	14954	17122	94%	0.0	99%	KU647676.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	14951	17133	94%	0.0	99%	KX447514.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	14951	17115	94%	0.0	99%	KX156776.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	14951	17133	94%	0.0	99%	KX051563.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	14951	17128	94%	0.0	99%	KU940228.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	14951	17128	94%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	14951	17128	94%	0.0	99%	KU365779.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	14945	17104	94%	0.0	99%	KX156775.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	14945	17110	94%	0.0	99%	KX156774.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	14942	17124	94%	0.0	99%	KX262887.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	14942	17115	94%	0.0	99%	KX247646.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	14942	17119	94%	0.0	99%	KU926310.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	14942	17106	94%	0.0	99%	KU497555.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	14942	17119	94%	0.0	99%	KU527068.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	14938	17032	94%	0.0	99%	KU940224.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	14936	17104	94%	0.0	99%	KU820897.5
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	14936	17104	94%	0.0	99%	KX447517.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	14936	17113	94%	0.0	99%	KX520666.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	14936	17104	94%	0.0	99%	KX087102.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	14936	17104	94%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	14936	17104	94%	0.0	99%	KU922923.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	14936	17119	94%	0.0	99%	KU365780.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	14936	17113	94%	0.0	99%	KU365777.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	14933	17115	94%	0.0	99%	KX694534.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	14933	17097	94%	0.0	99%	KX548902.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	14933	17115	94%	0.0	99%	KU501217.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	14927	17099	94%	0.0	99%	KX806557.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	14927	17104	94%	0.0	99%	KU758877.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	14927	17110	94%	0.0	99%	KU501216.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	14927	17104	94%	0.0	99%	KU365778.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	14924	17088	94%	0.0	99%	KX702400.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	14924	17101	94%	0.0	99%	KU312312.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	14918	17092	94%	0.0	99%	KU870645.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	14915	17097	94%	0.0	99%	KX247632.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	14915	17088	94%	0.0	99%	KU501215.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	14909	17092	94%	0.0	99%	KX856011.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	14909	17083	94%	0.0	99%	KX601168.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	14909	17092	94%	0.0	99%	KX446951.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	14909	17086	94%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	14909	17083	94%	0.0	99%	KX087101.2
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	14906	17079	94%	0.0	99%	KX377337.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	14906	17088	94%	0.0	99%	KU937936.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	14906	17068	94%	0.0	99%	KX117076.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	14906	17079	94%	0.0	99%	KU820898.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	14900	17063	94%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	14900	17063	94%	0.0	99%	KU963796.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	14900	17068	94%	0.0	99%	KU955590.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	14900	17068	94%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	14900	17068	94%	0.0	99%	KU761564.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	14898	17066	94%	0.0	99%	KX766028.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	14897	17059	94%	0.0	99%	KX253996.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	14897	17068	94%	0.0	99%	KX056898.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	14897	17059	94%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	14897	17059	94%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	14893	17055	94%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	14891	17054	94%	0.0	99%	KU866423.2
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	14888	17070	94%	0.0	99%	KX766029.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	14770	16917	94%	0.0	98%	KX827309.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	14765	16915	94%	0.0	98%	KU744693.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	14756	16902	94%	0.0	98%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	14693	16828	94%	0.0	98%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	14630	16744	94%	0.0	98%	KX694532.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	14630	16513	93%	0.0	98%	KF993678.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	14496	16585	94%	0.0	98%	JN860885.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	14494	16585	94%	0.0	98%	KU955593.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	14412	15682	86%	0.0	99%	KX447518.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	14372	16444	94%	0.0	97%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	14278	16316	94%	0.0	97%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	13367	15346	94%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	13364	15337	94%	0.0	95%	KX694533.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	13364	15337	94%	0.0	95%	KX377336.1
Select seq gb|KX447520.1|	Zika virus isolate 1_0016_PF polyprotein gene, partial cds	9714	14998	83%	0.0	98%	KX447520.1

[niman]

ZF39_39U|XX|2016-08-17 matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	18465	18465	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	18465	18465	100%	0.0	99%	KU853012.1
Select seq gb|KX842449.1|	Zika virus isolate ZIKV/Human/USA/2016/ZF10.UR-010 polyprotein gene, complete cds	18429	18429	100%	0.0	99%	KX842449.1
Select seq gb|KX838905.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM2-7719 polyprotein gene, complete cds	18426	18426	100%	0.0	99%	KX838905.1
Select seq gb|KX838904.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM1-7501 polyprotein gene, complete cds	18420	18420	100%	0.0	99%	KX838904.1
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Human/USA/2016/ZL2.SA-Hu0015 polyprotein gene, complete cds	18420	18420	100%	0.0	99%	KX832731.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	18417	18417	100%	0.0	99%	KX673530.1
Select seq gb|KX838906.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/ZM3-7729 polyprotein gene, complete cds	18408	18408	100%	0.0	99%	KX838906.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	18357	18357	100%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	18354	18354	100%	0.0	99%	KX280026.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	18348	18348	100%	0.0	99%	KX447512.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	18348	18348	100%	0.0	99%	KX369547.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	18348	18348	100%	0.0	99%	KU509998.3
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	18345	18345	100%	0.0	99%	KJ776791.2
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KX447509.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU991811.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	18345	18345	100%	0.0	99%	KU729217.2
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	18339	18339	100%	0.0	99%	KX447513.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	18336	18336	100%	0.0	99%	KX811222.1
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	18336	18336	100%	0.0	99%	KX197205.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447515.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KX447511.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	18336	18336	100%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	18336	18336	100%	0.0	99%	KU365779.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	18336	18336	100%	0.0	99%	KU321639.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KX447514.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	18330	18330	100%	0.0	99%	KX262887.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	18330	18330	100%	0.0	99%	KX051563.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	18330	18330	100%	0.0	99%	KU926309.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	18330	18330	100%	0.0	99%	KU501217.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KX447516.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU729218.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	18327	18327	100%	0.0	99%	KU527068.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	18327	18327	100%	0.0	99%	KU501216.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	18321	18321	100%	0.0	99%	KX694534.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	18321	18321	100%	0.0	99%	KX197192.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	18321	18321	100%	0.0	99%	KU926310.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	18321	18321	100%	0.0	99%	KU365780.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	18318	18318	100%	0.0	99%	KU940228.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	18318	18318	100%	0.0	99%	KU365777.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	18312	18312	100%	0.0	99%	KU758877.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	18312	18312	100%	0.0	99%	KX198135.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	18309	18309	100%	0.0	99%	KU647676.1
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX447517.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	18303	18303	100%	0.0	99%	KX247646.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KX247632.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	18303	18303	100%	0.0	99%	KX156776.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	18303	18303	100%	0.0	99%	KU312312.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	18300	18300	100%	0.0	99%	KX520666.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	18300	18300	100%	0.0	99%	KX156774.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	18300	18300	99%	0.0	99%	KU497555.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	18294	18294	100%	0.0	99%	KX856011.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU820897.5
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	18294	18294	100%	0.0	99%	KX446951.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	18294	18294	100%	0.0	99%	KU937936.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	18294	18294	100%	0.0	99%	KX156775.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	18294	18294	100%	0.0	99%	KX087102.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	18294	18294	100%	0.0	99%	KU501215.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	18291	18291	100%	0.0	99%	KX601168.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	18291	18291	100%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	18291	18291	100%	0.0	99%	KX087101.2
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	18291	18291	100%	0.0	99%	KU870645.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	18291	18291	100%	0.0	99%	KU922960.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	18285	18285	100%	0.0	99%	KX806557.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	18285	18285	100%	0.0	99%	KX548902.1
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	18285	18285	100%	0.0	99%	KX377337.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	18285	18285	100%	0.0	99%	KU922923.1
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	18276	18276	100%	0.0	99%	KX766029.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	18276	18276	100%	0.0	99%	KX702400.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	18276	18276	100%	0.0	99%	KU820898.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	18273	18273	100%	0.0	99%	KU955590.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	18269	18269	100%	0.0	99%	KX766028.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	18267	18267	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	18267	18267	100%	0.0	99%	KU761564.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	18254	18254	100%	0.0	99%	KX117076.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	18245	18245	100%	0.0	99%	KU963796.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	18240	18240	100%	0.0	99%	KX253996.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	18240	18240	100%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	18240	18240	100%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	18236	18236	100%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	18236	18236	100%	0.0	99%	KU866423.2
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	18222	18222	99%	0.0	99%	KU940224.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	18110	18110	100%	0.0	99%	KU744693.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	18078	18078	100%	0.0	99%	KX827309.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	18065	18065	100%	0.0	99%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	18011	18011	100%	0.0	99%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	17897	17897	100%	0.0	99%	KX694532.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	17704	17704	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	17703	17703	99%	0.0	98%	JN860885.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	17667	17667	98%	0.0	99%	KF993678.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	17558	17558	100%	0.0	98%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	17411	17411	100%	0.0	98%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	16401	16401	100%	0.0	95%	KX601167.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	16393	16393	99%	0.0	95%	HQ234499.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	16392	16392	100%	0.0	95%	KX694533.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	16388	16388	100%	0.0	95%	KX377336.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	16199	16199	88%	0.0	99%	KX447518.1

[niman]

Update of recent sequences and cases

http://recombinomics.co/thedrnimanshow/2016/09/092816.mp3

[niman]

Env tree

[niman]

Annotated full sequences

[niman]

Annotated ENV sequences

[niman]

1.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds

10,365 bp linear RNA

Accession:

 

KX922703.1

 

GI:

 

1071930510

GenBankFASTAGraphics

Select item 10719305122.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds

10,609 bp linear RNA

Accession:

 

KX922704.1

 

GI:

 

1071930512

GenBankFASTAGraphics

Select item 10719305143.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds

10,609 bp linear RNA

Accession:

 

KX922705.1

 

GI:

 

1071930514

GenBankFASTAGraphics

Select item 10719305164.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds

10,610 bp linear RNA

Accession:

 

KX922706.1

 

GI:

 

1071930516

GenBankFASTAGraphics

Select item 10719305185.

Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds

10,609 bp linear RNA

Accession:

 

KX922707.1

 

GI:

 

1071930518

GenBankFASTAGraphics

Select item 10719305206.

Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds

10,606 bp linear RNA

Accession:

 

KX922708.1

 

GI:

 

1071930520

GenBankFASTAGraphics

[niman]

updated ZF36 sequence (from serum)

ZF36_36S_2016-08-04

matches

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX842449.2|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds	15090	17266	94%	0.0	99%	KX842449.2
Select seq gb|KX922703.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds	15081	17257	94%	0.0	99%	KX922703.1
Select seq gb|KX838905.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds	15081	17257	94%	0.0	99%	KX838905.2
Select seq gb|KX832731.1|	Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds	15081	17257	94%	0.0	99%	KX832731.1
Select seq gb|KX922704.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds	15077	17254	94%	0.0	99%	KX922704.1
Select seq gb|KX922706.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds	15073	17250	94%	0.0	99%	KX922706.1
Select seq gb|KX838904.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds	15073	17245	94%	0.0	99%	KX838904.2
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	15046	17220	94%	0.0	99%	KU853012.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	15044	17221	94%	0.0	99%	KU853013.1
Select seq gb|KX922707.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds	15017	17198	94%	0.0	99%	KX922707.1
Select seq gb|KX673530.1|	Zika virus isolate PHE_semen_Guadeloupe, complete genome	15017	17189	94%	0.0	99%	KX673530.1
Select seq gb|KX838906.2|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds	15008	17185	94%	0.0	99%	KX838906.2
Select seq gb|KX922705.1|	Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds	14998	17175	94%	0.0	99%	KX922705.1
Select seq gb|KX922708.1|	Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds	14996	17167	94%	0.0	99%	KX922708.1
Select seq gb|KX447510.1|	Zika virus isolate 1_0049_PF polyprotein gene, complete cds	14987	17160	94%	0.0	99%	KX447510.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	14987	17169	94%	0.0	99%	KX280026.1
Select seq gb|KX811222.1|	Zika virus isolate Brazil_2015_MG, complete genome	14978	17151	94%	0.0	99%	KX811222.1
Select seq gb|KX369547.1|	Zika virus strain PF13/251013-18, complete genome	14978	17155	94%	0.0	99%	KX369547.1
Select seq gb|KX447512.1|	Zika virus isolate 1_0181_PF polyprotein gene, complete cds	14972	17149	94%	0.0	99%	KX447512.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	14972	17149	94%	0.0	99%	KU509998.3
Select seq gb|KX197205.1|	Zika virus isolate 9, complete genome	14969	17146	94%	0.0	99%	KX197205.1
Select seq gb|KJ776791.2|	Zika virus strain H/PF/2013, complete genome	14969	17146	94%	0.0	99%	KJ776791.2
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	14969	17151	94%	0.0	99%	KU991811.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	14969	17142	94%	0.0	99%	KU321639.1
Select seq gb|KX447509.1|	Zika virus isolate 1_0087_PF polyprotein gene, complete cds	14963	17146	94%	0.0	99%	KX447509.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	14963	17126	94%	0.0	99%	KX198135.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	14963	17128	94%	0.0	99%	KU729218.1
Select seq gb|KX879604.1|	Zika virus isolate SN089, complete genome	14960	17137	94%	0.0	99%	KX879604.1
Select seq gb|KX447515.1|	Zika virus isolate 1_0030_PF polyprotein gene, complete cds	14960	17137	94%	0.0	99%	KX447515.1
Select seq gb|KX447513.1|	Zika virus isolate 1_0134_PF polyprotein gene, complete cds	14960	17142	94%	0.0	99%	KX447513.1
Select seq gb|KX879603.1|	Zika virus isolate SN062, complete genome	14954	17128	94%	0.0	99%	KX879603.1
Select seq gb|KX447516.1|	Zika virus isolate 1_0111_PF polyprotein gene, complete cds	14954	17137	94%	0.0	99%	KX447516.1
Select seq gb|KX447511.1|	Zika virus isolate 1_0015_PF polyprotein gene, complete cds	14954	17137	94%	0.0	99%	KX447511.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	14954	17128	94%	0.0	99%	KX197192.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	14954	17126	94%	0.0	99%	KU926309.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	14954	17137	94%	0.0	99%	KU729217.2
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	14954	17122	94%	0.0	99%	KU647676.1
Select seq gb|KX447514.1|	Zika virus isolate 1_0035_PF polyprotein gene, complete cds	14951	17133	94%	0.0	99%	KX447514.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	14951	17115	94%	0.0	99%	KX156776.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	14951	17133	94%	0.0	99%	KX051563.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	14951	17128	94%	0.0	99%	KU940228.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	14951	17128	94%	0.0	99%	KU707826.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	14951	17128	94%	0.0	99%	KU365779.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	14945	17104	94%	0.0	99%	KX156775.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	14945	17110	94%	0.0	99%	KX156774.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	14942	17124	94%	0.0	99%	KX262887.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	14942	17115	94%	0.0	99%	KX247646.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	14942	17119	94%	0.0	99%	KU926310.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	14942	17106	94%	0.0	99%	KU497555.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	14942	17119	94%	0.0	99%	KU527068.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	14938	17032	94%	0.0	99%	KU940224.1
Select seq gb|KU820897.5|	Zika virus isolate FLR polyprotein gene, complete cds	14936	17104	94%	0.0	99%	KU820897.5
Select seq gb|KX447517.1|	Zika virus isolate 1_0038_PF polyprotein gene, complete cds	14936	17104	94%	0.0	99%	KX447517.1
Select seq gb|KX520666.1|	Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds	14936	17113	94%	0.0	99%	KX520666.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	14936	17104	94%	0.0	99%	KX087102.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	14936	17104	94%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	14936	17104	94%	0.0	99%	KU922923.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	14936	17119	94%	0.0	99%	KU365780.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	14936	17113	94%	0.0	99%	KU365777.1
Select seq gb|KX694534.1|	Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome	14933	17115	94%	0.0	99%	KX694534.1
Select seq gb|KX548902.1|	Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds	14933	17097	94%	0.0	99%	KX548902.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	14933	17115	94%	0.0	99%	KU501217.1
Select seq gb|KX806557.1|	Zika virus isolate TS17-2016, complete genome	14927	17099	94%	0.0	99%	KX806557.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	14927	17104	94%	0.0	99%	KU758877.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	14927	17110	94%	0.0	99%	KU501216.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	14927	17104	94%	0.0	99%	KU365778.1
Select seq gb|KX893855.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome	14925	17092	94%	0.0	99%	KX893855.1
Select seq gb|KX702400.1|	Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome	14924	17088	94%	0.0	99%	KX702400.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	14924	17101	94%	0.0	99%	KU312312.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	14918	17092	94%	0.0	99%	KU870645.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	14915	17097	94%	0.0	99%	KX247632.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	14915	17088	94%	0.0	99%	KU501215.1
Select seq gb|KX856011.1|	Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome	14909	17092	94%	0.0	99%	KX856011.1
Select seq gb|KX601168.1|	Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome	14909	17083	94%	0.0	99%	KX601168.1
Select seq gb|KX446951.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome	14909	17092	94%	0.0	99%	KX446951.1
Select seq gb|KX446950.1|	Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome	14909	17086	94%	0.0	99%	KX446950.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	14909	17083	94%	0.0	99%	KX087101.2
Select seq gb|KX377337.1|	Zika virus strain PRVABC-59, complete genome	14906	17079	94%	0.0	99%	KX377337.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	14906	17088	94%	0.0	99%	KU937936.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	14906	17068	94%	0.0	99%	KX117076.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	14906	17079	94%	0.0	99%	KU820898.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	14900	17063	94%	0.0	99%	KX185891.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	14900	17063	94%	0.0	99%	KU963796.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	14900	17068	94%	0.0	99%	KU955590.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	14900	17068	94%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	14900	17068	94%	0.0	99%	KU761564.1
Select seq gb|KX766028.1|	Zika virus isolate R114916, complete genome	14898	17066	94%	0.0	99%	KX766028.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	14897	17059	94%	0.0	99%	KX253996.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	14897	17068	94%	0.0	99%	KX056898.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	14897	17059	94%	0.0	99%	KU955589.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	14897	17059	94%	0.0	99%	KU820899.2
Select seq gb|KX266255.1|	Zika virus isolate ZIKV_SMGC-1, complete genome	14893	17055	94%	0.0	99%	KX266255.1
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	14891	17054	94%	0.0	99%	KU866423.2
Select seq gb|KX766029.1|	Zika virus isolate R116265, complete genome	14888	17070	94%	0.0	99%	KX766029.1
Select seq gb|KX827309.1|	Zika virus isolate ZKA-16-291 polyprotein gene, complete cds	14770	16917	94%	0.0	98%	KX827309.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	14765	16915	94%	0.0	98%	KU744693.1
Select seq gb|KX813683.1|	Zika virus isolate ZKA-16-097 polyprotein gene, complete cds	14756	16902	94%	0.0	98%	KX813683.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	14693	16828	94%	0.0	98%	KU681081.3
Select seq gb|KX694532.1|	Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome	14630	16744	94%	0.0	98%	KX694532.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	14630	16513	93%	0.0	98%	KF993678.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	14496	16585	94%	0.0	98%	JN860885.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	14494	16585	94%	0.0	98%	KU955593.1
Select seq gb|KX447518.1|	Zika virus isolate 1_0117_PF polyprotein gene, partial cds	14412	15682	86%	0.0	99%	KX447518.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	14372	16444	94%	0.0	97%	EU545988.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	14278	16316	94%	0.0	97%	KU681082.3
Select seq gb|KX601167.1|	Zika virus strain ZIKV/Aedes sp./MYS/P6-740/1966, complete genome	13367	15346	94%	0.0	95%	KX601167.1
Select seq gb|KX694533.1|	Zika virus strain ZIKV/Aedes aegypti/MYS/P6-740/1966, complete genome	13364	15337	94%	0.0	95%	KX694533.1
Select seq gb|KX377336.1|	Zika virus strain P6-740, complete genome	13364	15337	94%	0.0	95%	KX377336.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	13362	15339	94%	0.0	95%	HQ234499.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	10776	12432	94%	0.0	88%	KF383115.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	10761	12421	94%	0.0	88%	KF268948.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	10754	12414	94%	0.0	88%	KF268950.1
Select seq gb|KX830960.1|	Zika virus culture ATCC:VR-84 isolate MR776, complete genome	10749	12439	94%	0.0	88%	KX830960.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	10749	12439	94%	0.0	88%	KU720415.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	10749	12433	94%	0.0	88%	HQ234498.1
Select seq gb|KX576684.1|	Zika virus vector pZIKV-ICD, complete sequence	10740	17173	94%	0.0	99%	KX576684.1