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niman

Full 2016 Zika Sequences from Ecuador

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Universidad San Francisco de Quito has release full 2016 Zika sequences from Ecuador.
Edited by niman

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LOCUS       KX879604               10810 bp    RNA     linear   VRL 23-SEP-2016
DEFINITION  Zika virus isolate SN089, complete genome.
ACCESSION   KX879604
VERSION     KX879604.1  GI:1070088724
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10810)
  AUTHORS   Marquez,S., Carrera,J., Pullan,S., Lewandowski,K., Loman,N.,
            Bonsall,D., Pybus,O., Eisenberg,J., Coloma,J., Carroll,M.,
            Trueba,G. and Logue,C.H.
  TITLE     First Isolation and full genome sequencing of Zika virus from
            febrile patient sera in Esmeraldas city, Ecuador
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10810)
  AUTHORS   Marquez,S., Carrera,J., Pullan,S., Lewandowski,K., Loman,N.,
            Bonsall,D., Pybus,O., Eisenberg,J., Coloma,J., Carroll,M.,
            Trueba,G. and Logue,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2016) Virologia Animal, Colegio de Ciencias
            Biologicas y Ambientales, COCIBA, Universidad San Francisco de
            Quito, Diego de Robles, Quito 170157, Ecuador
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: BWA-MEM v. 0.7.13; Nanopolish v. v0.5.
            Sequencing Technology :: Illumina; Oxford Nanopore Technologies,
                                     MinION.
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10810
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="SN089"
                     /isolation_source="serum"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Ecuador: Esmeraldas"
                     /collection_date="Apr-2016"
                     /note="passage details: 1 passage in C6/36cells"
     CDS             112..10383
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOR82893.1"
                     /db_xref="GI:1070088725"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST
                     QVRYLGEEGSTPGVL"
ORIGIN      
        1 ccggagttgt tgatctgtgt gaatcagact gcgacagttc gagtttgaag cgaaagctag
       61 caacagtatc aacaggtttt attttggatt tggaaacgag agtttctggt catgaaaaac
      121 ccaaaaaaga aatccggagg attccggatt gtcaatatgc taaaacgcgg agtagcccgt
      181 gtgagcccct ttgggggctt gaagaggctg ccagccggac ttctgctggg tcatgggccc
      241 atcaggatgg tcttggcgat tctagccttt ttgagattca cggcaatcaa gccatcactg
      301 ggtctcatca atagatgggg ttcagtgggg aaaaaagagg ctatggaaat aataaagaag
      361 ttcaagaaag atctggctgc catgctgaga ataatcaatg ctaggaagga gaagaagaga
      421 cgaggcgcag atactagtgt cggaattgtt ggcctcctgc tgaccacagc tatggcagcg
      481 gaggtcacta gacgtgggag tgcatactat atgtacttgg acagaaacga tgctggggag
      541 gccatatctt ttccaaccac attggggatg aataagtgtt atatacagat catggatctt
      601 ggacacatgt gtgatgccac catgagctat gaatgcccta tgctggatga gggggtggaa
      661 ccagatgacg tcgattgttg gtgcaacacg acgtcaactt gggttgtgta cggaacctgc
      721 catcacaaaa aaggtgaagc acggagatct agaagagctg tgacgctccc ctcccattcc
      781 actaggaagc tgcaaacgcg gtcgcaaacc tggttggaat caagagaata cacaaagcac
      841 ttgattagag tcgaaaattg gatattcagg aaccctggct tcgcgttagc agcagctgcc
      901 atcgcttggc ttttgggaag ctcaacgagc caaaaagtca tatacttggt catgatactg
      961 ctgattgccc cggcatacag catcaggtgc ataggagtca gcaataggga ctttgtggaa
     1021 ggtatgtcag gtgggacttg ggttgatgtt gtcttggaac atggaggttg tgtcaccgta
     1081 atggcacagg acaaaccgac tgtcgacata gagctggtta caacaacagt cagcaacatg
     1141 gcggaggtaa gatcctactg ctatgaggca tcaatatcag acatggcttc ggacagccgc
     1201 tgcccaacac aaggtgaagc ctaccttgac aagcaatcag acactcaata tgtctgcaaa
     1261 agaacgttag tggacagagg ctggggaaat ggatgcggac tttttggcaa agggagcctg
     1321 gtgacatgcg ctaagtttgc atgctccaag aaaatgaccg ggaagagcat ccagccagag
     1381 aatctggagt accggataat gctgtcagtt catggctccc agcacagtgg gatgatcgtt
     1441 aatgacacag gacatgaaac tgatgagaat agagcgaagg ttgagataac gcccaattca
     1501 ccaagagccg aagccaccct ggggggtttt ggaagcctag gacttgattg tgaaccgagg
     1561 acaggccttg acttttcaga tttgtattac ttgactatga ataacaagca ctggttggtt
     1621 cacaaggagt ggttccacga cattccatta ccttggcacg ctggggcaga caccggaact
     1681 ccacactgga acaacaaaga agcactggta gagttcaagg acgcacatgc caaaaggcaa
     1741 actgtcgtgg ttctagggag tcaagaagga gcagttcaca cggcccttgc tggagctctg
     1801 gaggctgaga tggatggtgc aaagggaagg ctgtcctctg gccacttgaa atgtcgcctg
     1861 aaaatggata aacttagact gaagggcgtg tcatactcct tgtgtaccgc agcgttcaca
     1921 ttcaccaaga tcccggctga aacactgcac gggacagtca cagtggaggt acagtacgca
     1981 gggacagatg gaccttgcaa ggttccagct cagatggcgg tggacatgca aactctgacc
     2041 ccagttggga ggttgataac cgctaacccc gtaatcactg aaagcactga gaactctaag
     2101 atgatgctgg aacttgatcc accatttggg gactcttaca ttgtcatagg agtcggggag
     2161 aagaagatca cccaccactg gcacaggagt ggcagcacca ttggaaaagc atttgaagcc
     2221 actgtgagag gtgccaagag aatggcagtc ttgggagaca cagcctggga ctttggatca
     2281 gttggaggcg ctctcaactc attgggcaag ggcatccatc aaatttttgg agcagctttc
     2341 aaatcattgt ttggaggaat gtcctggttc tcacaaattc tcattggaac gttgctgatg
     2401 tggttgggtc tgaacacaaa gaatggatct atttccctta tgtgcttggc cttaggggga
     2461 gtgttgatct tcttatccac agccgtctct gctgatgtgg ggtgctcggt ggacttctca
     2521 aagaaggaga cgagatgcgg tacaggggtg ttcgtctata acgacgttga agcctggagg
     2581 gacaggtaca agtaccatcc tgactccccc cgtagattgg cagcagcagt caagcaagcc
     2641 tgggaagatg gtatctgcgg gatctcctct gtttcaagaa tggaaaacat catgtggaga
     2701 tcagtagaag gggagctcaa cgcaatcctg gaagagaatg gagttcaact gacggtcgtt
     2761 gtgggatctg taaagaaccc catgtggaga ggtccacaga gattgcccgt gcctgtgaac
     2821 gagctgcccc acggctggaa ggcttggggg aaatcgtact tcgtcagagc agcaaagaca
     2881 aataacagct ttgtcgtgga tggtgacaca ctgaaggaat gcccactcaa acatagagca
     2941 tggaacagct ttcttgtgga ggatcatggg ttcggggtat ttcacactag tgtctggctc
     3001 aaggttagag aagattattc attagagtgt gatccagccg ttattggaac agctgttaag
     3061 ggaaaggagg ctgtacacag tgatctaggc tactggattg agagtgagaa gaatgacaca
     3121 tggaggctga agagggccca tctgatcgag atgaaaacat gtgaatggcc aaagtcccac
     3181 acattgtgga cagatggaat agaagagagt gatctgatca tacccaagtc tttagctggg
     3241 ccactcagcc atcacaatac cagagagggc tacaggaccc aaatgaaagg gccatggcac
     3301 agtgaagagc ttgaaattcg gtttgaggaa tgcccaggca ctaaggtcca cgtggaggaa
     3361 acatgtggaa caagaggacc atctctgaga tcaaccactg caagcggaag ggtgatcgag
     3421 gaatggtgct gcagggagtg cacaatgccc ccactgtcgt tccgggctaa agatggctgt
     3481 tggtatggaa tggagataag gcccaggaaa gaaccagaaa gcaacttagt aaggtcagtg
     3541 gtgactgcag gatcaactga tcacatggat cacttctccc ttggagtgct tgtgattctg
     3601 ctcatggtgc aggaagggct gaagaagaga atgaccacaa agatcatcat aagcacatca
     3661 atggcagtgc tggtagctat gatcctggga ggattttcaa tgagtgacct ggctaagctt
     3721 gcaattttga tgggtgccac cttcgcggaa atgaacactg gaggagatgt agctcatctg
     3781 gcgctgatag cggcattcaa ggtcagacca gcgttgctgg tatctttcat cttcagagct
     3841 aattggacac cccgtgaaag catgctgctg gccttggcct cgtgtctttt gcaaactgcg
     3901 atctccgcct tggaaggcga cctgatggtt ctcatcaatg gttttgcttt ggcctggttg
     3961 gcaatacgag cgatggttgt tccacgcact gataacatca ccttggcaat cctggctgct
     4021 ctgacaccac tggcccgggg cacactgctt gtggcgtgga gagcaggcct tgctacttgc
     4081 ggggggttta tgctcctctc tctgaaggga aaaggcagtg tgaagaagaa cttaccattt
     4141 gtcatggccc tgggactaac cgctgtgagg ctggtcgacc ccatcaacgt ggtgggactg
     4201 ctgttgctca caaggagtgg gaagcggagc tggcccccta gcgaagtact cacagctgtt
     4261 ggcctgatat gcgcattggc tggagggttc gccaaggcag atatagagat ggctgggccc
     4321 atggccgcgg tcggtctgct aattgtcagt tacgtggtct caggaaagag tgtggacatg
     4381 tacattgaaa gagcaggtga catcacatgg gaaaaagatg cggaagtcac tggaaacagt
     4441 ccccggctcg atgtggcgct agatgagagt ggtgatttct ccctggtgga ggatgacggt
     4501 ccccccatga gagagatcat actcaaggtg gtcctgatga ccatctgtgg catgaaccca
     4561 atagccatac cctttgcagc tggagcgtgg tacgtatacg tgaagactgg aaaaaggagt
     4621 ggtgctctat gggatgtgcc tgctcccaag gaagtaaaaa agggggagac cacagatgga
     4681 gtgtacagag taatgactcg tagactgcta ggttcaacac aagttggagt gggagttatg
     4741 caagaggggg tctttcacac tatgtggcac gtcacaaaag gatccgcgct gagaagcggt
     4801 gaagggagac ttgatccata ctggggagat gtcaagcagg atctggtgtc atactgtggt
     4861 ccatggaagc tagatgccgc ctgggacggg cacagcgagg tgcagctctt ggccgtgccc
     4921 cccggagaga gagcgaggaa catccagact ctgcccggaa tatttaagac aaaggatggg
     4981 gacattggag ctgttgcgct ggattaccca gcaggaactt caggatctcc aatcctagac
     5041 aagtgtggga gagtgatagg actttatggc aatggggtcg tgatcaaaaa tgggagttat
     5101 gttagtgcca tcacccaagg gaggagggag gaagagactc ctgttgagtg cttcgagcct
     5161 tcgatgctga agaagaagca gctaactgtc ttagacttgc atcctggagc tgggaaaacc
     5221 aggagagttc ttcctgaaat agtccgtgaa gccataaaaa caagactccg tactgtgatc
     5281 ttagctccaa ccagggttgt cgctgctgaa atggaggaag cccttagagg gcttccagtg
     5341 cgttatatga caacagcagt caatgtcacc cactctggaa cagaaatcgt cgacttaatg
     5401 tgccatgcca ccttcacttc acgtctacta cagccaatca gagtccccaa ctataatctg
     5461 tatattatgg atgaggccca cttcacagat ccctcaagta tagcagcaag aggatacatt
     5521 tcaacaaggg ttgagatggg cgaggcggct gctatcttca tgaccgccac gccaccagga
     5581 acccgtgacg catttccgga ctccaactca ccaattatgg acaccgaagt ggaagtccca
     5641 gagagagcct ggagctcagg ctttgattgg gtgacggatc attctggaaa aacagtttgg
     5701 tttgttccaa gcgtgaggaa cggcaatgag atcgcagctt gtctgacaaa ggctggaaaa
     5761 cgggtcatac aactcagcag aaagactttt gagacagagt tccagaaaac aaaacatcaa
     5821 gagtgggact ttgtcgtgac aactgacatt tcagagatgg gcgccaactt taaagctgac
     5881 cgtgtcatag attccaggag atgcctaaag ccggtcatac ttgatggcga gagagtcatt
     5941 ctggctggac ccatgcctgt cacacatgcc agcgctgccc agaggagggg gcgcataggc
     6001 aggaatccca acaaacctgg agatgagtat ctgtatggag gtgggtgcgc agagactgac
     6061 gaagaccatg cacactggct tgaagcaaga atgctccttg acaatattta cctccaagat
     6121 ggcctcatag cctcgctcta tcgacctgag gccgacaaag tagcagccat tgagggagag
     6181 ttcaagctta ggacggagca aaggaagacc tttgtggaac tcatgaaaag aggagatctt
     6241 cctgtttggc tggcctatca ggttgcatct gccggaataa cctacacaga tagaagatgg
     6301 tgctttgatg gcacgaccaa caacaccata atggaagaca gtgtgccggc agaggtgtgg
     6361 accagacacg gagagaaaag agtgctcaaa ccgaggtgga tggacgccag agtttgttca
     6421 gatcatgcgg ccctgaagtc attcaaggag tttgccgctg ggaaaagagg agccgctttt
     6481 ggagtgatgg aagccctggg aacactgcca ggacacatga cagagagatt ccaggaagcc
     6541 attgacaacc tcgctgtgct catgcgggca gagactggaa gcaggcctta caaagccgcg
     6601 gcggcccaat tgccggagac cctagagacc attatgcttt tggggttgct gggaacagtc
     6661 tcgctgggaa tctttttcgt cttgatgagg aacaagggca tagggaagat gggctttgga
     6721 atggtgactc tcggggccag cgcatggctc atgtggctct cggaaattga gccagccaga
     6781 attgcatgtg tcctcattgt tgtgttccta ttgctggtgg tgctcatacc tgagccagaa
     6841 aagcaaagat ctccccagga caaccaaatg gcaatcatca tcatggtagc agtgggtctt
     6901 ctgggcttga ttaccgccaa tgaactcgga tggttggaga gaacaaagag tgacctaagc
     6961 catctaatgg gaaggagaga ggagggagca accataggat tctcaatgga cattgacctg
     7021 cggccagcct cagcttgggc catctatgct gccttgacaa ctttcattac cccagccgtc
     7081 caacatgcag tgaccacttc atacaacaac tactccttaa tggcgatggc cacgcaagct
     7141 ggagtgttgt ttggtatggg caaagggatg ccattctacg catgggactt tggagtcccg
     7201 ctgctaatga taggttgcta ctcacaatta acacccctga ccctaatagt ggccatcatt
     7261 ttgctcgtgg cgcactacat gtacttgatc ccagggctgc aggcagcagc tgcgcgtgct
     7321 gcccagaaga gaacggcagc tggcatcatg aagaaccctg ttgtggatgg aatagtggtg
     7381 actgacattg acacaatgac aattgacccc caagtggaga aaaagatggg acaggtgcta
     7441 ctcatagcag tagccgtctc cagcgccata ctgtcgcgga ccgcctgggg gtggggggag
     7501 gctggggccc tgatcacagc cgcaacttcc actttgtggg aaggctctcc gaacaagtac
     7561 tggaactcct ctacagccac ttcactgtgt aacattttta ggggaagtta cttggctgga
     7621 gcttctctaa tctacacagt aacaagaaac gctggcttgg tcaagagacg tgggggtgga
     7681 acaggagaga ccctgggaga gaaatggaag gcccgcttga accagatgtc ggccctggag
     7741 ttctactcct acaaaaagtc aggcatcacc gaggtgtgca gagaagaggc ccgccgcgcc
     7801 ctcaaggacg gtgtggcaac gggaggccat gctgtgtccc gaggaagtgc aaagctgaga
     7861 tggttggtgg agcggggata cctgcagccc tatggaaagg tcattgatct tggatgtggc
     7921 agagggggct ggagttacta cgccgccacc atccgcaaag ttcaagaagt gaaaggatac
     7981 acaaaaggag gccctggtca tgaagaaccc gtgttggtgc aaagctatgg gtggaacata
     8041 gtccgtctta agagtggggt ggacgtcttt catatggcgg ctgagccgtg tgacacgttg
     8101 ctgtgtgaca taggtgagtc atcatctagt cctgaagtgg aagaagcacg gacgctcaga
     8161 gtcctctcca tggtggggga ttggcttgaa aaaagaccag gagccttttg tataaaagtg
     8221 ttgtgcccat acaccagcac tatgatggaa acactggagc gactgcagcg taggtatggg
     8281 ggaggactgg tcagagtgcc actctcccgc aactctacac atgagatgta ctgggtctct
     8341 ggagcgaaaa gcaacaccat aaaaagtgtg tccaccacga gccagctcct cttggggcgc
     8401 atggacgggc ctaggaggcc agtgaaatat gaggaggatg tgaatctcgg ctctggcacg
     8461 cgggctgtgg taagctgcgc tgaagctccc aacatgaaga tcattggtaa ccgcattgaa
     8521 aggatccgca gtgagcacgc ggaaacgtgg ttctttgacg agaaccaccc atacaggaca
     8581 tgggcttacc atggaagcta tgaggccccc acacaagggt cagcgtcctc tctaataaac
     8641 ggggttgtca ggctcctgtc aaaaccctgg gatgtggtga ctggagtcac aggaatagcc
     8701 atgaccgaca ccacaccgta tggtcagcaa agagttttca aggaaaaagt ggacactagg
     8761 gtgccagacc cccaagaagg cactcgtcag gttatgagca tggtctcttc ctggttgtgg
     8821 aaagagctag gcaaacacaa acggccacga gtctgtacca aagaagagtt tatcaacaag
     8881 gttcgtagca atgcagcatt aggggcaata tttgaagagg aaaaagagtg gaagactgca
     8941 gtggaagctg tgaacgatcc aaggttctgg gctctagtgg acaaggaaag agagcaccac
     9001 ctgagaggag agtgccagag ttgtgtgtac aacatgatgg gaaaaagaga aaagaaacaa
     9061 ggggaatttg gaaaggccaa gggcagccgc gccatctggt atatgtggct aggggctaga
     9121 tttctagagt tcgaagccct tggattcttg aacgaggatc actggatggg gagagagaac
     9181 tcaggaggtg gtgttgaagg gctgggatta caaagactcg gatatgtcct agaagagatg
     9241 agtcgcatac caggaggaag gatgtatgca gatgacactg ctggctggga cacccgcatc
     9301 agcaggtttg atctggagaa tgaagctcta atcaccaacc aaatggagaa agggcacagg
     9361 gccttggcat tggccataat caagtacaca taccaaaaca aagtggtaaa ggtccttaga
     9421 ccagctgaaa aagggaaaac agttatggac attatttcga gacaagacca aagggggagc
     9481 ggacaagttg tcacttacgc tcttaacaca tttaccaacc tagtggtgca actcattcgg
     9541 aatatggagg ctgaggaagt tctagagatg caagacttgt ggctgctgcg gaggtcagag
     9601 aaagtgacca actggttgca gagcaacgga tgggataggc tcaaacgaat ggcagtcagt
     9661 ggagatgatt gcgttgtgaa gccaattgat gataggtttg cacatgccct caggttcttg
     9721 aatgatatgg gaaaagttag gaaggacaca caagagtgga aaccctcaac tggatgggac
     9781 aactgggaag aagttccgtt ttgctcccac cacttcaaca agctccatct caaggacggg
     9841 aggtccattg tggttccctg ccgccaccaa gatgaactga ttggccgggc ccgcgtctct
     9901 ccaggggcgg gatggagcat ccgggagact gcttgcctag caaaatcata tgctcaaatg
     9961 tggcagctcc tttatttcca cagaagggac ctccgactga tggccaatgc catttgttca
    10021 tctgtgccag ttgactgggt tccaactggg agaactacct ggtcaatcca tggaaaggga
    10081 gaatggatga ccactgaaga catgcttgtg gtgtggaata gagtgtggat tgaggagaac
    10141 gaccacatgg aagacaagac cccagttacg aaatggacag acattcccta tttgggaaaa
    10201 agggaagact tgtggtgtgg atctctcata gggcacagac cgcgcaccac ctgggctgag
    10261 aacattaaaa acacagtcaa catggtgcgc aggatcatag gtgatgaaga aaagtacatg
    10321 gactacctat ccacccaagt tcgctacttg ggtgaagaag ggtctacacc tggagtgctg
    10381 taagcaccaa tcctaatgtt gtcaggcctg ctagtcagcc acagcttggg gaaagctgtg
    10441 cagcctgtga cccccccagg agaagctggg aaaccaagcc tatagtcagg ccgagaacgc
    10501 catggcacgg aagaagccat gctgcctgtg agcccctcag aggacactga gtcaaaaaac
    10561 cccacgcgct tggaggcgca ggatgggaaa agaaggtggc gaccttcccc acccttcaat
    10621 ctggggcctg aactggagat cagctgtgga tctccagaag agggactagt ggttagagga
    10681 gaccccccgg aaaacgcaaa acagcatatt gacgctggga aagaccagag actccatgag
    10741 tttccaccac gctggccgcc aggcacagat cgccgaatag cggcggccgg tgtggggaaa
    10801 tccatgggtc

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession
18525 18525 100% 0.0 100% KX879604.1
18507 18507 100% 0.0 99% KX879603.1
18420 18420 100% 0.0 99% KX280026.1
18417 18417 100% 0.0 99% KX447510.1
18408 18408 100% 0.0 99% KX447512.1
18408 18408 100% 0.0 99% KX369547.1
18408 18408 100% 0.0 99% KU509998.3
18402 18402 100% 0.0 99% KX811222.1
18402 18402 100% 0.0 99% KJ776791.2
18402 18402 100% 0.0 99% KX447509.1
18399 18399 100% 0.0 99% KX447513.1
18393 18393 100% 0.0 99% KX197205.1
18393 18393 100% 0.0 99% KX447515.1
18393 18393 100% 0.0 99% KX447511.1
18393 18393 100% 0.0 99% KU991811.1
18393 18393 100% 0.0 99% KU321639.1
18390 18390 100% 0.0 99% KX447514.1
18390 18390 100% 0.0 99% KX051563.1
18384 18384 100% 0.0 99% KX447516.1
18384 18384 100% 0.0 99% KU729218.1
18384 18384 100% 0.0 99% KU707826.1
18384 18384 100% 0.0 99% KU365779.1
18381 18381 100% 0.0 99% KX262887.1
18381 18381 100% 0.0 99% KX197192.1
18375 18375 100% 0.0 99% KU729217.2
18375 18375 100% 0.0 99% KU527068.1
18372 18372 100% 0.0 99% KX694534.1
18372 18372 100% 0.0 99% KX198135.1
18372 18372 100% 0.0 99% KU926309.1
18372 18372 100% 0.0 99% KU501217.1
18372 18372 100% 0.0 99% KU365780.1
18366 18366 100% 0.0 99% KU940228.1
18366 18366 100% 0.0 99% KU647676.1
18366 18366 100% 0.0 99% KU501216.1
18366 18366 100% 0.0 99% KU365777.1
18363 18363 100% 0.0 99% KU758877.1
18363 18363 100% 0.0 99% KX247646.1
18363 18363 100% 0.0 99% KX156776.1
18363 18363 100% 0.0 99% KU926310.1
18359 18359 99% 0.0 99% KU497555.1
18357 18357 100% 0.0 99% KX156774.1
18354 18354 100% 0.0 99% KU820897.5
18354 18354 100% 0.0 99% KX447517.1
18354 18354 100% 0.0 99% KX247632.1
18354 18354 100% 0.0 99% KX156775.1
18354 18354 100% 0.0 99% KX087102.1
18354 18354 100% 0.0 99% KU853013.1
18354 18354 100% 0.0 99% KU365778.1
18354 18354 100% 0.0 99% KU312312.1
18352 18352 100% 0.0 99% KU853012.1
18348 18348 100% 0.0 99% KX520666.1
18348 18348 100% 0.0 99% KU922960.1
18345 18345 100% 0.0 99% KX856011.1
18345 18345 100% 0.0 99% KX806557.1
18345 18345 100% 0.0 99% KX548902.1
18345 18345 100% 0.0 99% KX446951.1
18345 18345 100% 0.0 99% KU937936.1
18345 18345 100% 0.0 99% KU922923.1
18345 18345 100% 0.0 99% KU501215.1
18339 18339 100% 0.0 99% KX601168.1
18339 18339 100% 0.0 99% KX446950.1
18339 18339 100% 0.0 99% KX087101.2
18339 18339 100% 0.0 99% KU870645.1
18336 18336 100% 0.0 99% KX842449.1
18336 18336 100% 0.0 99% KX702400.1
18336 18336 100% 0.0 99% KX377337.1
18330 18330 100% 0.0 99% KX838905.1
18327 18327 100% 0.0 99% KX838904.1
18327 18327 100% 0.0 99% KX832731.1
18327 18327 100% 0.0 99% KU820898.1
18321 18321 100% 0.0 99% KX673530.1
18321 18321 100% 0.0 99% KX056898.1
18321 18321 100% 0.0 99% KU955590.1
18319 18319 100% 0.0 99% KX766028.1
18318 18318 100% 0.0 99% KX766029.1
18318 18318 100% 0.0 99% KU740184.2
18318 18318 100% 0.0 99% KU761564.1
18312 18312 100% 0.0 99% KX838906.1
18312 18312 100% 0.0 99% KX117076.1
18303 18303 100% 0.0 99% KX185891.1
18303 18303 100% 0.0 99% KU963796.1
18300 18300 100% 0.0 99% KX253996.1
18300 18300 100% 0.0 99% KU955589.1
18300 18300 100% 0.0 99% KU820899.2
18296 18296 100% 0.0 99% KX266255.1
18294 18294 100% 0.0 99% KU866423.2
18273 18273 99% 0.0 99% KU940224.1
18159 18159 100% 0.0 99% KU744693.1
18137 18137 100% 0.0 99% KX827309.1
18123 18123 100% 0.0 99% KX813683.1
18060 18060 100% 0.0 99% KU681081.3
17948 17948 100% 0.0 99% KX694532.1
17768 17768 100% 0.0 98% KU955593.1
17766 17766 99% 0.0 98% JN860885.1
17715 17715 98% 0.0 99% KF993678.1
17612 17612 100% 0.0 98% EU545988.1
17456 17456 100% 0.0 98% KU681082.3

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LOCUS       KX879603               10812 bp    RNA     linear   VRL 23-SEP-2016
DEFINITION  Zika virus isolate SN062, complete genome.
ACCESSION   KX879603
VERSION     KX879603.1  GI:1070088722
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 10812)
  AUTHORS   Marquez,S., Carrera,J., Pullan,S., Lewandowski,K., Loman,N.,
            Bonsall,D., Pybus,O., Eisenberg,J., Coloma,J., Carroll,M.,
            Trueba,G. and Logue,C.H.
  TITLE     First Isolation and full genome sequencing of Zika virus from
            febrile patient sera in Esmeraldas city, Ecuador
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 10812)
  AUTHORS   Marquez,S., Carrera,J., Pullan,S., Lewandowski,K., Loman,N.,
            Bonsall,D., Pybus,O., Eisenberg,J., Coloma,J., Carroll,M.,
            Trueba,G. and Logue,C.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-SEP-2016) Virologia Animal, Colegio de Ciencias
            Biologicas y Ambientales, COCIBA, Universidad San Francisco de
            Quito, Diego de Robles, Quito 170157, Ecuador
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: BWA-MEM v. 0.7.13; Nanopolish v. v0.5.
            Sequencing Technology :: Illumina; Oxford Nanopore Technologies,
                                     MinION.
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..10812
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="SN062"
                     /isolation_source="serum"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Ecuador: Esmeraldas"
                     /collection_date="Apr-2016"
                     /note="passage details: 1 passage in C6/36cells"
     CDS             108..10379
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AOR82892.1"
                     /db_xref="GI:1070088723"
                     /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI
                     RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK
                     RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI
                     MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT
                     LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV
                     IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA
                     GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA
                     ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT
                     AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL
                     ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE
                     VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD
                     AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY
                     VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW
                     HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN
                     IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT
                     QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP
                     TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY
                     IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV
                     PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT
                     KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR
                     RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK
                     VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM
                     EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL
                     PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV
                     LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP
                     QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA
                     SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL
                     LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV
                     VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP
                     NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ
                     MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK
                     VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH
                     MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM
                     ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP
                     VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG
                     SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD
                     PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV
                     EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA
                     RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD
                     TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ
                     DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR
                     LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH
                     FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR
                     DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT
                     PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST
                     QVRYLGEEGSTPGVL"
ORIGIN      
        1 agtagttgat ctgtgtgaat cagactgcga cagttcgagt ttgaagcgaa agctagcaac
       61 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccaa
      121 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga
      181 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca
      241 ggatggtctt ggcgattcta gcctttttga gattcacggc aatcaagcca tcactgggtc
      301 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaataata aagaagttca
      361 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacgag
      421 gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg
      481 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca
      541 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac
      601 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag
      661 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc
      721 acaaaaaagg tgaagcacgg agatctagaa gagctgtgac gctcccctcc cattccacta
      781 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga
      841 ttagagtcga aaattggata ttcaggaacc ctggcttcgc gttagcagca gctgccatcg
      901 cttggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga
      961 ttgccccggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta
     1021 tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc accgtaatgg
     1081 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg
     1141 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttcggac agccgctgcc
     1201 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa
     1261 cgttagtgga cagaggctgg ggaaatggat gcggactttt tggcaaaggg agcctggtga
     1321 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc
     1381 tggagtaccg gataatgctg tcagttcatg gctcccagca cagtgggatg atcgttaatg
     1441 acacaggaca tgaaactgat gagaatagag cgaaggttga gataacgccc aattcaccaa
     1501 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag
     1561 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggttcaca
     1621 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac
     1681 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg
     1741 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg
     1801 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa
     1861 tggataaact tagactgaag ggcgtgtcat actccttgtg taccgcagcg ttcacattca
     1921 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga
     1981 cagatggacc ttgcaaggtt ccagctcaga tggcggtgga catgcaaact ctgaccccag
     2041 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga
     2101 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga
     2161 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg
     2221 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg
     2281 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat
     2341 cattgtttgg aggaatgtcc tggttctcac aaattctcat tggaacgttg ctgatgtggt
     2401 tgggtctgaa cacaaagaat ggatccattt cccttatgtg cttggcctta gggggagtgt
     2461 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga
     2521 aggagacgag atgcggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca
     2581 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg
     2641 aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg tggagatcag
     2701 tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg gtcgttgtgg
     2761 gatctgtaaa gaaccccatg tggagaggtc cacagagatt gcccgtgcct gtgaacgagc
     2821 tgccccacgg ctggaaggct tgggggaaat cgtacttcgt cagagcagca aagacaaata
     2881 acagctttgt cgtggatggt gacacactga aggaatgccc actcaaacat agagcatgga
     2941 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg
     3001 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggaa
     3061 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga
     3121 ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaag tcccacacat
     3181 tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttta gctgggccac
     3241 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg
     3301 aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg gaggaaacat
     3361 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat
     3421 ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg ggctaaagat ggctgttggt
     3481 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcagtggtga
     3541 ctgcaggatc aactgatcac atggatcact tctcccttgg agtgcttgtg attctgctca
     3601 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg
     3661 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa
     3721 ttttgatggg tgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc
     3781 tgatagcggc attcaaggtc agaccagcgt tgctggtatc tttcatcttc agagctaatt
     3841 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct
     3901 ccgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa
     3961 tacgagcgat ggttgttcca cgcactgata acatcacctt ggcaatcctg gctgctctga
     4021 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgcgggg
     4081 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca
     4141 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg ggactgctgt
     4201 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc
     4261 tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg
     4321 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca
     4381 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc
     4441 ggctcgatgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc
     4501 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag
     4561 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg
     4621 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt
     4681 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag
     4741 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag
     4801 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat
     4861 ggaagctaga tgccgcctgg gacgggcaca gcgaggtgca gctcttggcc gtgccccccg
     4921 gagagagagc gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca
     4981 ttggagctgt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt
     5041 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaatggg agttatgtta
     5101 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccttcga
     5161 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga
     5221 gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag
     5281 ctccaaccag ggttgtcgct gctgaaatgg aggaagccct tagagggctt ccagtgcgtt
     5341 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc
     5401 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata
     5461 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa
     5521 caagggttga gatgggcgag gcggctgcta tcttcatgac cgccacgcca ccaggaaccc
     5581 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga
     5641 gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca gtttggtttg
     5701 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg
     5761 tcatacaact cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt
     5821 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg
     5881 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattctgg
     5941 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga
     6001 atcccaacaa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag
     6061 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc
     6121 tcatagcctc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca
     6181 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg
     6241 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct
     6301 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca
     6361 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc
     6421 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcc gcttttggag
     6481 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg
     6541 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg
     6601 cccaattgcc ggagacccta gagaccatta tgcttttggg gttgctggga acagtctcgc
     6661 tgggaatctt tttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg
     6721 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg
     6781 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc
     6841 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagtg ggtcttctgg
     6901 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc
     6961 taatgggaag gagagaggag ggagcaacca taggattctc aatggacatt gacctgcggc
     7021 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac
     7081 atgcagtgac cacttcatac aacaactact ccttaatggc gatggccacg caagctggag
     7141 tgttgtttgg tatgggcaaa gggatgccat tctacgcatg ggactttgga gtcccgctgc
     7201 taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc atcattttgc
     7261 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc
     7321 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg
     7381 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca
     7441 tagcagtagc cgtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg
     7501 gggccctgat cacagccgca acttccactt tgtgggaagg ctctccgaac aagtactgga
     7561 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt
     7621 ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag
     7681 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct
     7741 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca
     7801 aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt
     7861 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag
     7921 ggggctggag ttactacgcc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa
     7981 aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc
     8041 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt
     8101 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc
     8161 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt
     8221 gcccatacac cagcactatg atggaaacac tggagcgact gcagcgtagg tatgggggag
     8281 gactggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag
     8341 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg
     8401 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg
     8461 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga
     8521 tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatac aggacatggg
     8581 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg
     8641 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga
     8701 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc
     8761 cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag
     8821 agctaggcaa acacaaacgg ccacgagtct gtaccaaaga agagtttatc aacaaggttc
     8881 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg
     8941 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga
     9001 gaggagagtg ccagagttgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg
     9061 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc
     9121 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag
     9181 gaggtggtgt tgaagggctg ggattacaaa gactcggata tgtcctagaa gagatgagtc
     9241 gcataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcatcagca
     9301 ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg cacagggcct
     9361 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag
     9421 ctgaaaaagg gaaaacggtt atggacatta tttcgagaca agaccaaagg gggagcggac
     9481 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata
     9541 tggaggctga ggaagttcta gagatgcaag acttgtggct gctgcggagg tcagagaaag
     9601 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag
     9661 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg
     9721 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact
     9781 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt
     9841 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag
     9901 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgct caaatgtggc
     9961 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg
    10021 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat
    10081 ggatgaccac tgaagacatg cttgtggtgt ggaatagagt gtggattgag gagaacgacc
    10141 acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg ggaaaaaggg
    10201 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca
    10261 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact
    10321 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacgcctgga gtgctgtaag
    10381 caccaatcct aatgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc
    10441 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg
    10501 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca
    10561 cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg
    10621 ggcctgaact ggagatcagc tgtggatctc cagaagaggg actagtggtt agaggagacc
    10681 ccccggaaaa cgcaaaacag catattgacg ctgggaaaga ccagagactc catgagtttc
    10741 caccacgctg gccgccaggc acagatcgcc gaatagcggc ggccggtgtg gggaaatcca
    10801 tgggagatcg ga

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession
18525 18525 100% 0.0 100% KX879603.1
18507 18507 100% 0.0 99% KX879604.1
18411 18411 100% 0.0 99% KX280026.1
18408 18408 100% 0.0 99% KX447510.1
18399 18399 100% 0.0 99% KX447512.1
18399 18399 100% 0.0 99% KX369547.1
18399 18399 100% 0.0 99% KU509998.3
18393 18393 100% 0.0 99% KX811222.1
18393 18393 100% 0.0 99% KJ776791.2
18393 18393 100% 0.0 99% KX447509.1
18390 18390 100% 0.0 99% KX447513.1
18384 18384 100% 0.0 99% KX197205.1
18384 18384 100% 0.0 99% KX447515.1
18384 18384 100% 0.0 99% KX447511.1
18384 18384 100% 0.0 99% KU991811.1
18384 18384 100% 0.0 99% KU321639.1
18381 18381 100% 0.0 99% KX447514.1
18381 18381 100% 0.0 99% KX051563.1
18375 18375 100% 0.0 99% KX447516.1
18375 18375 100% 0.0 99% KU729218.1
18375 18375 100% 0.0 99% KU707826.1
18375 18375 100% 0.0 99% KU365779.1
18372 18372 100% 0.0 99% KX262887.1
18372 18372 100% 0.0 99% KX197192.1
18366 18366 100% 0.0 99% KU729217.2
18366 18366 100% 0.0 99% KU527068.1
18363 18363 100% 0.0 99% KX694534.1
18363 18363 100% 0.0 99% KX198135.1
18363 18363 100% 0.0 99% KU926309.1
18363 18363 100% 0.0 99% KU501217.1
18363 18363 100% 0.0 99% KU365780.1
18357 18357 100% 0.0 99% KU940228.1
18357 18357 100% 0.0 99% KU647676.1
18357 18357 100% 0.0 99% KU501216.1
18357 18357 100% 0.0 99% KU365777.1
18354 18354 100% 0.0 99% KU758877.1
18354 18354 100% 0.0 99% KX247646.1
18354 18354 100% 0.0 99% KX156776.1
18354 18354 100% 0.0 99% KU926310.1
18350 18350 99% 0.0 99% KU497555.1
18348 18348 100% 0.0 99% KX156774.1
18345 18345 100% 0.0 99% KU820897.5
18345 18345 100% 0.0 99% KX447517.1
18345 18345 100% 0.0 99% KX247632.1
18345 18345 100% 0.0 99% KX156775.1
18345 18345 100% 0.0 99% KX087102.1
18345 18345 100% 0.0 99% KU853013.1
18345 18345 100% 0.0 99% KU365778.1
18345 18345 100% 0.0 99% KU312312.1
18343 18343 100% 0.0 99% KU853012.1
18339 18339 100% 0.0 99% KX520666.1
18339 18339 100% 0.0 99% KU922960.1
18336 18336 100% 0.0 99% KX856011.1
18336 18336 100% 0.0 99% KX806557.1
18336 18336 100% 0.0 99% KX548902.1
18336 18336 100% 0.0 99% KX446951.1
18336 18336 100% 0.0 99% KU937936.1
18336 18336 100% 0.0 99% KU922923.1
18336 18336 100% 0.0 99% KU501215.1
18330 18330 100% 0.0 99% KX601168.1
18330 18330 100% 0.0 99% KX446950.1
18330 18330 100% 0.0 99% KX087101.2
18330 18330 100% 0.0 99% KU870645.1
18327 18327 100% 0.0 99% KX842449.1
18327 18327 100% 0.0 99% KX702400.1
18327 18327 100% 0.0 99% KX377337.1
18321 18321 100% 0.0 99% KX838905.1
18318 18318 100% 0.0 99% KX838904.1
18318 18318 100% 0.0 99% KX832731.1
18318 18318 100% 0.0 99% KU820898.1
18312 18312 100% 0.0 99% KX673530.1
18312 18312 100% 0.0 99% KX056898.1
18312 18312 100% 0.0 99% KU955590.1
18310 18310 100% 0.0 99% KX766028.1
18309 18309 100% 0.0 99% KX766029.1
18309 18309 100% 0.0 99% KU740184.2
18309 18309 100% 0.0 99% KU761564.1
18303 18303 100% 0.0 99% KX838906.1
18303 18303 100% 0.0 99% KX117076.1
18294 18294 100% 0.0 99% KX185891.1
18294 18294 100% 0.0 99% KU963796.1
18291 18291 100% 0.0 99% KX253996.1
18291 18291 100% 0.0 99% KU955589.1
18291 18291 100% 0.0 99% KU820899.2
18287 18287 100% 0.0 99% KX266255.1
18285 18285 100% 0.0 99% KU866423.2
18264 18264 99% 0.0 99% KU940224.1
18150 18150 100% 0.0 99% KU744693.1
18128 18128 100% 0.0 99% KX827309.1
18114 18114 100% 0.0 99% KX813683.1
18051 18051 100% 0.0 99% KU681081.3
17939 17939 100% 0.0 99% KX694532.1
17759 17759 100% 0.0 98% KU955593.1
17757 17757 99% 0.0 98% JN860885.1
17712 17712 98% 0.0 99% KF993678.1
17603 17603 100% 0.0 98% EU545988.1
17447 17447 100% 0.0 98% KU681082.3

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