niman Posted October 20, 2016 Report Share Posted October 20, 2016 (edited) Yokohama City Institute of Public Health has released a full Zika sequence, Yokohama/1/2016, from a May 20, 2016 collection. Although the country of origin is not cited, the sequence matches the sub-clade circulating in Florida. Edited October 20, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted October 20, 2016 Author Report Share Posted October 20, 2016 LOCUS LC190723 10786 bp RNA linear VRL 19-OCT-2016 DEFINITION Zika virus gnomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016. ACCESSION LC190723 VERSION LC190723.1 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 AUTHORS Ozawa,H., Usuku,S., Nakayama,E., Tajima,S., Kato,K., Yamashita,A., Sekizika,T. and Kuroda,M. TITLE Zika virus isolate ZIKV/Hu/Yokohama/1/2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10786) AUTHORS Ozawa,H., Usuku,S., Nakayama,E., Tajima,S., Kato,K., Yamashita,A., Sekizika,T. and Kuroda,M. TITLE Direct Submission JOURNAL Submitted (07-OCT-2016) Contact:Hiroki Ozawa Yokohama City Institute of Public Helth, Microbiological Department of Reserch and Testing; 2-7-1 Kanazawa-ku Tomiokahigashi, Yokohama, Kanagawa 236-0051, Japan FEATURES Location/Qualifiers source 1..10786 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Hu/Yokohama/1/2016" /host="Homo sapiens" /db_xref="taxon:64320" /country="Japan:Kanagawa, Yokohama" /collection_date="2016-05-20" CDS 90..10361 /codon_start=1 /product="polyprotein" /protein_id="BAV82373.1" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGEEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 atcagactgc gacagttcga gtttgaagcg aaagctagca acagtatcaa caggttttat 61 tttggatttg gaaacgagag tttctggtca tgaaaaaccc aaaaaagaaa tccggaggat 121 tccggattgt caatatgcta aaacgcggag tagcccgtgt gagccccttt gggggcttga 181 agaggctgcc agccggactt ctgctgggtc atgggcccat caggatggtc ttggcgattc 241 tagccttttt gagattcacg gcaatcaagc catcactggg tctcatcaat agatggggtt 301 cagtggggaa aaaagaggct atggaaataa taaagaagtt caagaaagat ctggctgcca 361 tgctgagaat aatcaatgct aggaaggaga agaagagacg aggcgcagat actagtgtcg 421 gaattgttgg cctcctgctg accacagcta tggcagcgga ggtcactaga cgtgggagtg 481 catactacat gtacttggac agaaacgatg ctggggaggc catatctttt ccaaccacat 541 tggggatgaa taagtgttat atacagatca tggatcttgg acacatgtgt gatgccacca 601 tgagctatga atgccctatg ctggatgagg gggtggaacc agatgacgtc gattgttggt 661 gcaacacgac gtcaacttgg gttgtgtacg gaacctgcca tcacaaaaaa ggtgaagcac 721 ggagatctag aagagctgtg acgctcccct cccattccac taggaagctg caaacgcggt 781 cgcaaacctg gttggaatca agagaataca caaagcactt gattagagtc gaaaattgga 841 tattcaggaa ccctggcttc gcgttagcag cagctgccat cgcttggctt ttgggaagct 901 caacgagcca aaaagtcata tacttggtca tgatactgct gattgccccg gcatacagca 961 tcaggtgcat aggagtcagc aatagggact ttgtggaagg tatgtcaggt gggacttggg 1021 ttgatgttgt cttggaacat ggaggttgtg tcaccgtaat ggcacaggac aaaccgactg 1081 tcgacataga gctggttaca acaacagtca gcaacatggc ggaggtaaga tcctactgct 1141 atgaggcatc aatatcagac atggcttcgg acagccgctg cccaacacaa ggtgaagcct 1201 accttgacaa gcaatcagac actcaatatg tctgcaaaag aacgttagtg gacagaggct 1261 ggggaaatgg atgtggactt tttggcaaag ggagcctggt gacatgcgct aagtttgcat 1321 gctccaagaa aatgaccggg aagagcatcc agccagagaa tctggagtac cggataatgc 1381 tgtcagttca tggctcccag cacagtggga tgatcgttaa tgacacagga catgaaactg 1441 atgagaatag agcgaaggtt gagataacgc ccaattcacc aagagccgaa gccaccctgg 1501 ggggttttgg aagcctagga cttgattgtg aaccgaggac aggccttgac ttttcagatt 1561 tgtattactt gactatgaat aacaagcact ggttggttca caaggagtgg ttccacgaca 1621 ttccattacc ttggcacgct ggggcagaca ccggaactcc acactggaac aacaaagaag 1681 cactggtaga gttcaaggac gcacatgcca aaaggcaaac tgtcgtggtt ctagggagtc 1741 aagaaggagc agttcacacg gcccttgctg gagctctgga ggctgagatg gatggtgcaa 1801 agggaaggct gtcctctggc cacttgaaat gtcgcctgaa aatggataaa cttagattga 1861 agggcgtgtc atactccttg tgtaccgcag cgttcacatt caccaagatc ccggctgaaa 1921 cactgcacgg gacagtcaca gtggaggtac agtacgcagg gacagatgga ccttgcaagg 1981 ttccagctca gatggcggtg gacatgcaaa ctctgacccc agttgggagg ttgataaccg 2041 ccaaccccgt aatcactgaa agcactgaga actctaagat gatgctggaa cttgatccac 2101 catttgggga ctcttacatt gtcataggag tcggggagaa gaagatcacc caccactggc 2161 acaggagtgg cagcaccatt ggaaaagcat ttgaagccac tgtgagaggt gccaagagaa 2221 tggcagtctt gggagacaca gcctgggact ttggatcagt tggaggcgct ctcaactcat 2281 tgggcaaggg catccatcaa atttttggag cagctttcaa atcattgttt ggaggaatgt 2341 cctggttctc acaaatcctc attggaacgt tgctgatgtg gttgggtctg aacacaaaga 2401 atggatctat ttccctcatg tgcttggcct tagggggagt gttgatcttc ttatccacag 2461 ccgtctctgc tgatgtgggg tgctcggtgg acttctcaaa gaaggagacg agatgcggca 2521 caggggtgtt cgtctataac gacgttgaag cctggaggga caggtacaag taccatcctg 2581 actccccccg tagattggca gcagcagtca agcaagcctg ggaagatggt atctgcggga 2641 tctcctctgt ttcaagaatg gaaaacatca tgtggagatc agtagaaggg gagctcaatg 2701 caatcctgga agagaatgga gttcaactga cggtcgttgt gggatctgta aaaaacccca 2761 tgtggagagg tccacagaga ttgcccgtgc ctgtgaacga gctgccccac ggctggaagg 2821 cttgggggaa atcgtacttc gttagagcag caaagacaaa taacagcttt gtcgtggatg 2881 gtgacacact gaaggaatgc ccactcaaac atagagcatg gaacagcttt cttgtggagg 2941 atcatggatt cggggtattt cacactagtg tctggctcaa ggttagagaa gattattcat 3001 tagagtgtga tccagccgtt attggaacag ctgttaaggg aaaggaggct gtacacagtg 3061 atctaggcta ctggattgag agtgagaaga atgacacatg gaggctgaag agggcccatc 3121 tgatcgagat gaaaacatgt gaatggccaa agtcccacac attgtggaca gatggaatag 3181 aagagagtga tctgatcata cccaagtctt tagctgggcc actcagccat cacaatacca 3241 gagagggcta caggacccaa atgaaagggc catggcatag tgaagagctt gaaattcggt 3301 ttgaggaatg cccaggcact aaggtccacg tggaggaaac atgtggaaca agaggaccat 3361 ctctgagatc aaccactgca agcggaaggg tgatcgagga atggtgctgc agggagtgca 3421 caatgccccc actgtcgttc cgggctaaag atggctgttg gtatggaatg gagataaggc 3481 ccaggaaaga accagaaagc aacttagtaa ggtcagtggt gactgcagga tcaactgatc 3541 acatggatca cttctccctt ggagtgcttg tgattctgct catggtgcag gaagggctga 3601 agaagagaat gaccacaaag atcatcataa gcacatcaat ggcagtgctg gtagctatga 3661 tcctgggagg attttcaatg agtgacctgg ctaagcttgc aattttgatg ggtgccacct 3721 tcgcggaaat gaacactgga ggagatgtag ctcatctggc gctgatagcg gcattcaaag 3781 tcagaccagc gttgctggta tctttcatct tcagagctaa ttggacaccc cgtgaaagca 3841 tgctgctggc cttggcctcg tgtcttttgc aaactgcgat ctccgccttg gaaggcgacc 3901 tgatggttct catcaatggt tttgctttgg cctggttggc gatacgagcg atggttgttc 3961 cacgcactga taacatcacc ttggcaatcc tggctgctct gacaccactg gcccggggca 4021 cactgcttgt ggcgtggaga gcaggccttg ctacttgcgg ggggtttatg ctcctctctc 4081 tgaagggaaa aggcagtgtg aagaagaact taccatttgt catggccctg ggactaaccg 4141 ctgtgaggct ggtcgacccc atcaacgtgg tgggactgct gttgctcaca aggagtggga 4201 agcggagctg gccccctagc gaagtactca cagctgttgg cctgatatgc gcattggctg 4261 gagggttcgc caaggcagat atagagatgg ctgggcccat ggccgcggtc ggtctgctaa 4321 ttgtcagtta cgtggtctca ggaaagagtg tggacatgta cattgaaaga gcaggtgaca 4381 tcacatggga aaaagatgcg gaagtcactg gaaacagtcc ccggctcgat gtggcgctag 4441 atgagagtgg tgatttctcc ctggtggagg atgacggtcc ccccatgaga gagatcatac 4501 tcaaggtggt cctgatgacc atctgtggca tgaacccaat agccataccc tttgcagctg 4561 gagcgtggta cgtatacgtg aagactggaa aaaggagtgg tgctctatgg gatgtgcctg 4621 ctcccaagga agtaaaaaag ggggagacca cagatggagt gtacagagta atgactcgta 4681 gactgctagg ttcaacacaa gttggagtgg gagttatgca agagggggtc tttcacacta 4741 tgtggcacgt cacaaaagga tccgcgctga gaagcggtga agggagactt gatccatact 4801 ggggagatgt caagcaggat ctggtgtcat actgtggtcc atggaagcta gatgccgcct 4861 gggacgggca cagcgaggtg cagctcttgg ccgtgccccc cggagagaga gcgaggaaca 4921 tccagactct gcccggaata tttaagacaa aggatgggga cattggagcg gttgcgctgg 4981 attacccagc aggaacttca ggatctccaa tcctagacaa gtgtgggaga gtgataggac 5041 tttatggcaa tggggtcgtg atcaaaaatg ggagttatgt tagtgccatc acccaaggga 5101 ggagggagga agagactcct gttgagtgct tcgagccttc gatgctgaag aagaagcagc 5161 taactgtctt agacttgcat cctggagctg ggaaaaccag gagagttctt cctgaaatag 5221 tccgtgaagc tataaaaaca agactccgta ctgtgatctt agctccaacc agggttgtcg 5281 ctgctgaaat ggaggaagcc cttagagggc ttccagtgcg ttatatgaca acagcagtca 5341 atgtcaccca ttctggaaca gaaatcgtcg acttaatgtg ccatgccacc ttcacttcac 5401 gtctactaca gccaatcaga gtccccaact ataatctgta tattatggat gaggcccact 5461 tcacagatcc ctcaagtata gcagcaagag gatacatttc aacaagggtt gagatgggcg 5521 aggcggctgc catcttcatg accgccacgc caccaggaac ccgtgacgca tttccggact 5581 ccaactcacc aattatggac accgaagtgg aagtcccaga gagagcctgg agctcaggct 5641 ttgattgggt gacggatcat tctggaaaaa cagtttggtt tgttccaagc gtgaggaacg 5701 gcaatgagat cgcagcttgt ctgacaaagg ctggaaaacg ggtcatacag ctcagcagaa 5761 agacttttga gacagagttc cagaaaacaa aacatcaaga gtgggacttt gtcgtgacaa 5821 ccgacatttc agagatgggc gccaacttta aagctgaccg tgtcatagat tccaggagat 5881 gcctaaagcc ggtcatactt gatggcgaga gagtcattct ggctggaccc atgcctgtca 5941 cacatgccag cgctgcccag aggagggggc gcataggcag gaatcccaac aaacctggag 6001 atgagtatct gtatggaggt gggtgcgcag agactgacga agaccatgca cactggcttg 6061 aagcaagaat gctccttgac aatatttacc tccaagatgg cctcatagcc tcgctctatc 6121 gacctgaggc cgacaaagta gcagccattg agggagagtt caagcttagg acggagcaaa 6181 ggaagacctt tgtggaactc atgaaaagag gagatcttcc tgtttggctg gcctatcagg 6241 ttgcatctgc cggaataact tacacagata gaagatggtg ctttgatggc acgaccaaca 6301 acaccataat ggaagacagt gtgccggcag aggtgtggac cagacacgga gagaaaagag 6361 tgctcaaacc gaggtggatg gacgccagag tttgttcaga tcatgcggcc ctgaagtcat 6421 tcaaggagtt tgccgctggg aaaagaggag cggcttttgg agtgatggaa gccctgggaa 6481 cactaccagg acacatgaca gagagattcc aggaagccat tgacaacctc gctgtgctca 6541 tgcgggcaga gactggaagc aggccttaca aagccgcggc ggcccaattg ccggagaccc 6601 tagagaccat tatgcttttg gggttgctgg gaacagtctc gctgggaatc tttttcgtct 6661 tgatgaggaa caagggcata gggaagatgg gctttggaat ggtgactctt ggggccagcg 6721 catggctcat gtggctctcg gaaattgagc cagccagaat tgcatgtgtc ctcattgttg 6781 tgttcctatt gctggtggtg ctcatacctg agccagaaaa gcaaagatct ccccaggaca 6841 accaaatggc aatcatcatc atggtagcag taggtcttct gggcttgatc accgccaatg 6901 aactcggatg gttggagaga acaaagagtg acctaagcca tctaatggga aggagagagg 6961 agggagcaac cataggattc tcaatggaca ttgacctgcg gccagcctca gcttgggcca 7021 tctatgctgc cttgacaact ttcattaccc cagccgtcca acatgcagtg accacttcat 7081 acaacaacta ctccttaatg gcgatggcca cgcaagctgg agtgttgttt ggtatgggca 7141 aagggatgcc attctacgca tgggactttg gagtcccgct gctaatgata ggttgctact 7201 cacaattaac acccctaacc ctaatagtgg ccatcatttt gctcgtggcg cactacatgt 7261 acttgatccc agggctgcag gcagcagctg cgcgtgctgc ccagaagaga acggcagctg 7321 gcatcatgaa gaaccctgtt gtggatggaa tagtggtgac tgacattgac acaatgacaa 7381 ttgaccccca agtggagaaa aagatgggac aggtgctact catagcagta gccgtctcca 7441 gcgccatact gtcgcggacc gcctgggggt ggggggaggc tggggccctg atcacagccg 7501 caacttccac tttgtgggaa ggctctccga acaagtactg gaactcctct acagccactt 7561 cactgtgtaa catttttagg ggaagttact tggctggagc ttctctaatc tacacagtaa 7621 caagaaacgc tggcttggtc aagagacgtg ggggtggaac aggagagacc ctgggagaga 7681 aatggaaggc ccgcttgaac cagatgtcgg ccctggagtt ctactcctac aaaaagtcag 7741 gcatcaccga ggtgtgcaga gaagaggccc gccgcgccct caaggacggt gtggcaacgg 7801 gaggccatgc tgtgtcccga ggaagtgcaa agctgagatg gttggtggag cggggatacc 7861 tgcagcccta tggaaaggtc attgatcttg gatgtggcag agggggctgg agttactacg 7921 ccgccaccat ccgcaaagtt caagaagtga aaggatacac aaaaggaggc cctggtcatg 7981 aagaacccgt gttggtgcaa agctatgggt ggaacatagt ccgtctcaag agtggggtgg 8041 acgtctttca tatggcggct gagccgtgtg acacgttgct gtgtgacata ggtgagtcat 8101 catctagtcc tgaagtggaa gaagcacgga cgctcagagt cctctccatg gtgggggatt 8161 ggcttgaaaa aagaccagga gccttttgta taaaagtgtt gtgcccatac accagcacta 8221 tgatggaaac cctggagcga ctgcagcgta ggtatggggg aggactggtc agagtgccac 8281 tctcccgcaa ctctacacat gagatgtact gggtctctgg agcgaaaagc aacaccataa 8341 aaagtgtgtc caccacgagc cagctcctct tggggcgcat ggacgggcct aggaggccag 8401 tgaaatatga ggaggatgtg aatctcggct ctggcacgcg ggctgtggtg agctgcgctg 8461 aagctcccaa catgaagatc attggtaacc gcattgaaag gatccgcagt gagcacgcgg 8521 aaacgtggtt ctttgacgag aaccacccat ataggacatg ggcttaccat ggaagctatg 8581 aggcccccac acaagggtca gcatcctctc tagtaaacgg ggttgtcagg ctcctgtcaa 8641 aaccctggga tgtggtgact ggagtcacag gaatagccat gaccgacacc acaccgtatg 8701 gtcagcaaag agttttcaag gaaaaagtgg acactagggt gccagacccc caagaaggca 8761 ctcgtcaggt tatgagcatg gtctcttcct ggttgtggaa agagctaggc aaacacaaac 8821 ggccacgagt ctgtaccaaa gaagagttca tcaacaaggt tcgtagcaat gcagcattag 8881 gggcaatatt tgaagaggaa aaagagtgga agactgcagt ggaagctgtg aacgatccaa 8941 ggttctgggc tctagtggac aaggaaagag agcaccacct gagaggagag tgccagagtt 9001 gtgtgtacaa catgatggga aaaagagaaa agaaacaagg ggaatttgga aaggccaagg 9061 gcagccgcgc catctggtat atgtggctag gggctagatt tctagagttc gaagcccttg 9121 gattcttgaa cgaggatcac tggatgggga gagagaactc aggaggtggt gttgaagggc 9181 tgggattaca aagactcgga tatgtcctag aagagatgag tcgcatacca ggaggaagga 9241 tgtatgcaga tgacactgct ggctgggata cccgcatcag caggtttgat ctagagaatg 9301 aagctctaat caccaaccaa atggagaaag ggcacagggc cttggcattg gccataatca 9361 agtacacata ccaaaacaaa gtggtaaagg tccttagacc agctgaaaaa gggaaaacag 9421 ttatggacat tatttcgaga caagaccaaa gggggagcgg acaagttgtc acttacgctc 9481 ttaacacatt taccaaccta gtggtgcaac tcattcggaa tatggaggct gaggaagttc 9541 tagagatgca agacttgtgg ctgctgcgga ggtcagagaa agtgaccaac tggttgcaga 9601 gcaacggatg ggataggctc aaacgaatgg cagtcagtgg agatgattgc gttgtgaagc 9661 caattgatga taggtttgca catgccctca ggttcttgaa tgatatggga aaagttagga 9721 aggacacaca agagtggaaa ccctcaactg gatgggacaa ctgggaagaa gttccgtttt 9781 gctcccacca cttcaacaag ctccatctca aggacgggag gtccattgtg gttccctgcc 9841 gccaccaaga tgaactgatt ggccgggccc gcgtctctcc aggggcggga tggagcatcc 9901 gggagactgc ttgcctagca aaatcatatg cgcaaatgtg gcagctcctt tatttccaca 9961 gaagggacct ccgactgatg gccaatgcca tttgttcatc tgtgccagtt gactgggttc 10021 caactgggag aactacctgg tcaatccatg gaaagggaga atggatgacc actgaagaca 10081 tgcttgtggt gtggaacaga gtgtggattg aggagaacga ccacatggaa gacaagaccc 10141 cagttacgaa atggacagac attccctatt tgggaaaaag ggaagacttg tggtgtggat 10201 ctctcatagg gcacagaccg cgcaccacct gggctgagaa cattaaaaac acagtcaaca 10261 tggtgcgcag gatcataggt gaggaagaaa agtacatgga ctacctatcc acccaagttc 10321 gctacttggg tgaagaaggg tctacacctg gagtgctgta agcaccaatc ttaatgttgt 10381 caggcctgct agtcagccac agcttgggga aagctgtgca gcctgtgacc cccccaggag 10441 aagctgggaa accaagccta tagtcaggcc gagaacgcca tggcacggaa gaagccatgc 10501 tgcctgtgag cccctcagag gacactgagt caaaaaaccc cacgcgcttg gaggcgcagg 10561 atgggaaaag aaggtggcga ccttccccac ccttcaatct ggggcctgaa ctggagatca 10621 gctgtggatc tccagaagag ggactagtgg ttagaggaga ccccccggaa aacgcaaaac 10681 agcatattga cgctgggaaa gaccagagac tccatgagtt tccaccacgc tggccgccag 10741 gcacagatcg ccgaatagcg gcggccggtg tggggaaatc catggg Link to comment Share on other sites More sharing options...
niman Posted October 20, 2016 Author Report Share Posted October 20, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18465 18465 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18465 18465 100% 0.0 99% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18453 18453 100% 0.0 99% KX842449.2 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX922707.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18437 18437 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX922704.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18435 18435 100% 0.0 99% KX673530.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX838906.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX838904.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18419 18419 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18372 18372 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18366 18366 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18366 18366 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18363 18363 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18363 18363 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18354 18354 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18354 18354 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18354 18354 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18348 18348 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18348 18348 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18345 18345 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18345 18345 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18339 18339 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18339 18339 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18339 18339 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18339 18339 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18339 18339 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18336 18336 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18330 18330 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18330 18330 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18321 18321 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18321 18321 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18318 18318 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18318 18318 99% 0.0 99% KU497555.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18312 18312 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18312 18312 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18309 18309 100% 0.0 99% KU922960.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18303 18303 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18303 18303 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18303 18303 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18303 18303 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18303 18303 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18300 18300 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18300 18300 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18300 18300 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18300 18300 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18298 18298 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18294 18294 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18294 18294 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18285 18285 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18278 18278 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18273 18273 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18258 18258 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18258 18258 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18254 18254 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18240 18240 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18119 18119 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18096 18096 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18083 18083 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18029 18029 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17915 17915 100% 0.0 99% KX694532.1 Select seq gb|JN860885.1| Zika virus isolate FSS13025 polyprotein gene, partial cds 17730 17730 99% 0.0 98% JN860885.1 Link to comment Share on other sites More sharing options...
niman Posted October 21, 2016 Author Report Share Posted October 21, 2016 Update Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq dbj|LC190723.1| Zika virus gnomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 18525 18525 100% 0.0 100% LC190723.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 18465 18465 100% 0.0 99% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 18465 18465 100% 0.0 99% KU853012.1 Select seq gb|KX842449.2| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL010U polyprotein gene, complete cds 18453 18453 100% 0.0 99% KX842449.2 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 18444 18444 100% 0.0 99% KX922707.1 Select seq gb|KX922703.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL021U polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX922703.1 Select seq gb|KX838905.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL02M polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX838905.2 Select seq gb|KX832731.1| Zika virus isolate ZIKV/Homo_sapiens/USA//2016/Hu0015SA polyprotein gene, complete cds 18438 18438 100% 0.0 99% KX832731.1 Select seq gb|KX922706.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL038U polyprotein gene, complete cds 18437 18437 100% 0.0 99% KX922706.1 Select seq gb|KX922704.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL030U polyprotein gene, complete cds 18435 18435 100% 0.0 99% KX922704.1 Select seq gb|KX673530.1| Zika virus isolate PHE_semen_Guadeloupe, complete genome 18435 18435 100% 0.0 99% KX673530.1 Select seq gb|KX838906.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL03M polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX838906.2 Select seq gb|KX838904.2| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL01M polyprotein gene, complete cds 18429 18429 100% 0.0 99% KX838904.2 Select seq gb|KX922705.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL032U polyprotein gene, complete cds 18419 18419 100% 0.0 99% KX922705.1 Select seq gb|KX922708.1| Zika virus isolate ZIKV/Aedes_aegypti/USA/2016/FL04M polyprotein gene, complete cds 18411 18411 100% 0.0 99% KX922708.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 18375 18375 100% 0.0 99% KX447510.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 18372 18372 100% 0.0 99% KX280026.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 18366 18366 100% 0.0 99% KX447512.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 18366 18366 100% 0.0 99% KX369547.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 18366 18366 100% 0.0 99% KU509998.3 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 18363 18363 100% 0.0 99% KJ776791.2 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 18363 18363 100% 0.0 99% KX447509.1 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU991811.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 18363 18363 100% 0.0 99% KU729217.2 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 18357 18357 100% 0.0 99% KX447513.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 18354 18354 100% 0.0 99% KX811222.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 18354 18354 100% 0.0 99% KX197205.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447515.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 18354 18354 100% 0.0 99% KX447511.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 18354 18354 100% 0.0 99% KU321639.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 18348 18348 100% 0.0 99% KX879604.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 18348 18348 100% 0.0 99% KX447514.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 18348 18348 100% 0.0 99% KX051563.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 18345 18345 100% 0.0 99% KX447516.1 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU729218.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 18345 18345 100% 0.0 99% KU707826.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 18345 18345 100% 0.0 99% KU527068.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 18345 18345 100% 0.0 99% KU365779.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 18339 18339 100% 0.0 99% KX879603.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 18339 18339 100% 0.0 99% KX262887.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 18339 18339 100% 0.0 99% KX197192.1 Select seq gb|KU926310.1| Zika virus isolate Rio-S1, complete genome 18339 18339 100% 0.0 99% KU926310.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 18339 18339 100% 0.0 99% KU926309.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 18336 18336 100% 0.0 99% KU940228.1 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 18330 18330 100% 0.0 99% KX694534.1 Select seq gb|KX198135.1| Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome 18330 18330 100% 0.0 99% KX198135.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU501217.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 18330 18330 100% 0.0 99% KU365780.1 Select seq gb|KU647676.1| Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU647676.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU501216.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 18327 18327 100% 0.0 99% KU365777.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 18321 18321 100% 0.0 99% KX447517.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 18321 18321 100% 0.0 99% KU758877.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 18321 18321 100% 0.0 99% KX247646.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 18321 18321 100% 0.0 99% KX156776.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 18318 18318 100% 0.0 99% KX520666.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 18318 18318 100% 0.0 99% KX156774.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 18318 18318 99% 0.0 99% KU497555.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU820897.5 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KX247632.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 18312 18312 100% 0.0 99% KX156775.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 18312 18312 100% 0.0 99% KX087102.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU365778.1 Select seq gb|KU312312.1| Zika virus isolate Z1106033 polyprotein gene, complete cds 18312 18312 100% 0.0 99% KU312312.1 Select seq gb|KU922960.1| Zika virus isolate MEX/InDRE/Sm/2016, complete genome 18309 18309 100% 0.0 99% KU922960.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 18303 18303 100% 0.0 99% KX806557.2 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 18303 18303 100% 0.0 99% KX856011.1 Select seq gb|KX548902.1| Zika virus isolate ZIKV/COL/FCC00093/2015 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KX548902.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 18303 18303 100% 0.0 99% KX446951.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 18303 18303 100% 0.0 99% KU937936.1 Select seq gb|KU922923.1| Zika virus isolate MEX/InDRE/Lm/2016, complete genome 18303 18303 100% 0.0 99% KU922923.1 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 18303 18303 100% 0.0 99% KU501215.1 Select seq gb|KX601168.1| Zika virus strain ZIKV/Homo Sapiens/PRI/PRVABC59/2015, complete genome 18300 18300 100% 0.0 99% KX601168.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 18300 18300 100% 0.0 99% KX446950.1 Select seq gb|KX087101.2| Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome 18300 18300 100% 0.0 99% KX087101.2 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 18300 18300 100% 0.0 99% KU870645.1 Select seq gb|KX893855.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-2/2016, complete genome 18298 18298 100% 0.0 99% KX893855.1 Select seq gb|KX702400.1| Zika virus strain Zika virus/Homo sapiens/VEN/UF-1/2016, complete genome 18294 18294 100% 0.0 99% KX702400.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 18294 18294 100% 0.0 99% KX377337.1 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 18285 18285 100% 0.0 99% KX766029.1 Select seq gb|KU820898.1| Zika virus isolate GZ01 polyprotein gene, complete cds 18285 18285 100% 0.0 99% KU820898.1 Select seq gb|KX056898.1| Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KX056898.1 Select seq gb|KU955590.1| Zika virus isolate Z16019 polyprotein gene, complete cds 18282 18282 100% 0.0 99% KU955590.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 18278 18278 100% 0.0 99% KX766028.1 Select seq gb|KU740184.2| Zika virus isolate GD01 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU740184.2 Select seq gb|KU761564.1| Zika virus isolate GDZ16001 polyprotein gene, complete cds 18276 18276 100% 0.0 99% KU761564.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 18273 18273 100% 0.0 99% KX117076.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KX185891.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 18264 18264 100% 0.0 99% KU963796.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 18258 18258 100% 0.0 99% KX253996.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 18258 18258 100% 0.0 99% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 18258 18258 100% 0.0 99% KU820899.2 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 18254 18254 100% 0.0 99% KX266255.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 18254 18254 100% 0.0 99% KU866423.2 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 18240 18240 99% 0.0 99% KU940224.1 Select seq gb|KU744693.1| Zika virus isolate VE_Ganxian, complete genome 18119 18119 100% 0.0 99% KU744693.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 18096 18096 100% 0.0 99% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 18083 18083 100% 0.0 99% KX813683.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 18029 18029 100% 0.0 99% KU681081.3 Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 17915 17915 100% 0.0 99% KX694532.1 Link to comment Share on other sites More sharing options...
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