niman Posted October 27, 2016 Report Share Posted October 27, 2016 Faculty of Medicine Siriraj Hospital in Bangkok Thailand has released a partial 2016 Zika sequence which is most closely related to 2013 sequence from Thailand. Link to comment Share on other sites More sharing options...
niman Posted October 27, 2016 Author Report Share Posted October 27, 2016 LOCUS KY007221 2088 bp RNA linear VRL 25-OCT-2016 DEFINITION Zika virus isolate BKK01 polyprotein gene, partial cds. ACCESSION KY007221 VERSION KY007221.1 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 2088) AUTHORS Leelahakorn,N., Horthongkham,N., Sornprasert,S., Athipanyasilp,N., Kantakamalakul,W. and Sutthent,R. TITLE Characterization of zika virus in Thailand JOURNAL Unpublished REFERENCE 2 (bases 1 to 2088) AUTHORS Leelahakorn,N., Horthongkham,N., Sornprasert,S., Athipanyasilp,N., Kantakamalakul,W. and Sutthent,R. TITLE Direct Submission JOURNAL Submitted (18-OCT-2016) Microbiology, Faculty of Medicine Siriraj Hospital, Mahidol University, 2 Wanglang, Bangkok, Bangkok 10700, Thailand COMMENT ##Assembly-Data-START## Assembly Method :: DNAbaser v. 4.2 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..2088 /organism="Zika virus" /mol_type="genomic RNA" /isolate="BKK01" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="Thailand" /collection_date="30-Aug-2016" CDS <1..>2088 /codon_start=1 /product="polyprotein" /protein_id="AOX24135.1" /translation="KEKKRRGTDTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRSDAG EAISFPTTLGMNKCYIQIMDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVY GTCHHKKGEARRSRRAVTLPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFA LAAAAIAWLLGSSTSQKVIYLVMILLIAPAYSIRCIGVNNRDFVEGMSGGTWVDVVLE HGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDK QSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLS VHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSD LYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVL GSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTK IPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKM MLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFG SVGGALNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLVCLA LGGVLIFLSTAVSA" ORIGIN 1 aaggagaaga agagacgagg cacagacact agtgtcggaa ttgttggcct cctgctgacc 61 acagccatgg cagcggaggt cactagacgt gggagtgcat actatatgta cttggacaga 121 agcgatgctg gggaggccat atcttttcca accacactgg ggatgaataa gtgttatata 181 cagatcatgg atcttggaca catgtgtgat gccaccatga gctatgaatg ccctatgctg 241 gatgaggggg tagaaccaga tgacgtcgat tgttggtgca acacgacgtc aacttgggtt 301 gtgtacggaa cctgccacca caaaaaaggt gaagcgcgga gatctagaag agctgtgacg 361 ctcccctccc actccactag gaagctgcaa acgcggtcgc agacctggtt ggaatcaaga 421 gaatacacaa agcacttgat tagagtcgaa aattggatat tcaggaaccc tggcttcgcg 481 ttggcagcag ctgccatcgc ttggcttttg ggaagctcaa cgagccaaaa agtcatatac 541 ttggtcatga tactgctgat tgccccggca tatagcatca ggtgcatagg agtcaacaat 601 agggactttg tggaaggtat gtcaggtggg acttgggttg atgtcgtctt ggaacatgga 661 ggttgtgtca ccgtaatggc acaggacaaa ccgactgtcg acatagagct ggttacaaca 721 acagtcagca acatggcaga ggtaagatcc tactgctatg aggcatcaat atcggacatg 781 gcttcggaca gccgctgccc aacacaaggt gaagcctacc ttgacaagca atcagacact 841 caatatgtct gcaaaagaac gttagtggac agaggctggg gaaatggatg tggacttttt 901 ggcaaaggga gcctggtgac atgcgccaag tttgcatgct ccaagaaaat gaccgggaag 961 agcatccagc cagagaatct ggagtaccga ataatgctgt cagttcatgg ctcccagcac 1021 agtgggatga tcgttaatga cacaggacat gaaactgatg agaatagagc gaaggttgag 1081 ataacgccca attcaccaag agccgaagcc accctgggag gttttggaag cctaggactt 1141 gattgtgaac cgaggacagg ccttgacttt tcagatttgt attacttgac tatgaataac 1201 aagcactggt tggttcacaa ggagtggttc cacgacattc cattaccttg gcacgctggg 1261 gcagacaccg gaactccaca ctggaacaac aaagaagcac tggtagagtt caaggatgca 1321 catgccaaaa ggcaaactgt cgtggtccta gggagtcaag agggagcagt tcacacggct 1381 cttgctggag ctctggaggc tgagatggat ggtgcaaagg gaaggctgtc ctctggccac 1441 ttgaaatgtc gcctgaaaat ggataaactt agactgaagg gcgtgtcata ctccctgtgt 1501 accgcagcgt tcacattcac taagatcccg gctgaaacac tgcacgggac agtcacagtg 1561 gaggtacagt acgcagggac agatggacct tgcaaggttc cagctcagat ggcggtggac 1621 atgcaaactc tgaccccagt tgggaggttg ataaccgcta accctgtaat cactgaaagc 1681 actgagaact ctaagatgat gctggaactt gatccaccat ttggggactc ttacattgtc 1741 ataggagtcg gggagaagaa gatcacccac cactggcaca ggagtggcag caccattgga 1801 aaagcatttg aagccactgt gagaggtgcc aagagaatgg cagtcttggg agacacagcc 1861 tgggactttg gatcagttgg aggcgctctc aactcattgg gcaagggtat ccatcaaatt 1921 tttggagcag ctttcaaatc attgtttgga ggaatgtcct ggttctcaca aattctcatt 1981 ggaacgttgc tgatgtggtt gggtctgaat acaaagaatg gatctatttc ccttgtgtgc 2041 ttggccttag ggggagtgtt gatcttcttg tccacagccg tctctgct Link to comment Share on other sites More sharing options...
niman Posted October 27, 2016 Author Report Share Posted October 27, 2016 Sequences producing significant alignments: Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments Sequences producing significant alignments: Select for downloading or viewing reports Description Max score Total score Query cover E value Ident Accession Select seq gb|KX694532.1| Zika virus strain ZIKV/Homo sapiens/THA/PLCal_ZV/2013, complete genome 3698 3698 100% 0.0 99% KX694532.1 Select seq gb|KF993678.1| Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds 3698 3698 100% 0.0 99% KF993678.1 Select seq gb|KX447521.1| Zika virus isolate 1_0080_PF polyprotein gene, partial cds 3631 3631 100% 0.0 99% KX447521.1 Select seq gb|KX447509.1| Zika virus isolate 1_0087_PF polyprotein gene, complete cds 3631 3631 100% 0.0 99% KX447509.1 Select seq gb|KX879604.1| Zika virus isolate SN089, complete genome 3626 3626 100% 0.0 99% KX879604.1 Select seq gb|KX447519.1| Zika virus isolate 1_0199_PF polyprotein gene, partial cds 3626 3626 100% 0.0 99% KX447519.1 Select seq gb|KX447513.1| Zika virus isolate 1_0134_PF polyprotein gene, complete cds 3626 3626 100% 0.0 99% KX447513.1 Select seq gb|KX447510.1| Zika virus isolate 1_0049_PF polyprotein gene, complete cds 3626 3626 100% 0.0 99% KX447510.1 Select seq gb|KX262887.1| Zika virus isolate 103451, complete genome 3626 3626 100% 0.0 99% KX262887.1 Select seq gb|KY014315.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME152-SER polyprotein gene, complete cds 3624 3624 100% 0.0 98% KY014315.1 Select seq gb|KX879603.1| Zika virus isolate SN062, complete genome 3622 3622 100% 0.0 98% KX879603.1 Select seq gb|KX856011.1| Zika virus strain ZIKV/Aedes sp./MEX_I-44/2016, complete genome 3622 3622 100% 0.0 98% KX856011.1 Select seq gb|KJ776791.2| Zika virus strain H/PF/2013, complete genome 3622 3622 100% 0.0 98% KJ776791.2 Select seq gb|KX694534.1| Zika virus strain ZIKV/Homo sapiens/HND/R103451/2015, complete genome 3622 3622 100% 0.0 98% KX694534.1 Select seq gb|KX447520.1| Zika virus isolate 1_0016_PF polyprotein gene, partial cds 3622 3622 100% 0.0 98% KX447520.1 Select seq gb|KX447518.1| Zika virus isolate 1_0117_PF polyprotein gene, partial cds 3622 3622 100% 0.0 98% KX447518.1 Select seq gb|KX447515.1| Zika virus isolate 1_0030_PF polyprotein gene, complete cds 3622 3622 100% 0.0 98% KX447515.1 Select seq gb|KX447514.1| Zika virus isolate 1_0035_PF polyprotein gene, complete cds 3622 3622 100% 0.0 98% KX447514.1 Select seq gb|KX447511.1| Zika virus isolate 1_0015_PF polyprotein gene, complete cds 3622 3622 100% 0.0 98% KX447511.1 Select seq gb|KX247632.1| Zika virus isolate MEX_I_7 polyprotein gene, complete cds 3622 3622 100% 0.0 98% KX247632.1 Select seq gb|KX051563.1| Zika virus isolate Haiti/1/2016, complete genome 3622 3622 100% 0.0 98% KX051563.1 Select seq gb|KU509998.3| Zika virus strain Haiti/1225/2014, complete genome 3622 3622 100% 0.0 98% KU509998.3 Select seq gb|KU991811.1| Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds 3622 3622 100% 0.0 98% KU991811.1 Select seq gb|KU681081.3| Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome 3622 3622 100% 0.0 98% KU681081.3 Select seq gb|KY014307.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ49D1-PLA polyprotein gene, complete cds 3617 3617 100% 0.0 98% KY014307.1 Select seq gb|KY014306.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME178-PLA polyprotein gene, complete cds 3617 3617 100% 0.0 98% KY014306.1 Select seq gb|KX197205.1| Zika virus isolate 9, complete genome 3617 3617 100% 0.0 98% KX197205.1 Select seq gb|KX447516.1| Zika virus isolate 1_0111_PF polyprotein gene, complete cds 3617 3617 100% 0.0 98% KX447516.1 Select seq gb|KX576684.1| Zika virus vector pZIKV-ICD, complete sequence 3617 3617 100% 0.0 98% KX576684.1 Select seq gb|KX369547.1| Zika virus strain PF13/251013-18, complete genome 3617 3617 100% 0.0 98% KX369547.1 Select seq gb|KX446951.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome 3617 3617 100% 0.0 98% KX446951.1 Select seq gb|KU758871.1| Zika virus isolate 17170 polyprotein gene, partial cds 3617 3617 100% 0.0 98% KU758871.1 Select seq gb|KU758870.1| Zika virus isolate 17160 polyprotein gene, partial cds 3617 3617 100% 0.0 98% KU758870.1 Select seq gb|KX280026.1| Zika virus isolate Paraiba_01, complete genome 3617 3617 100% 0.0 98% KX280026.1 Select seq gb|KU527068.1| Zika virus strain Natal RGN, complete genome 3617 3617 100% 0.0 98% KU527068.1 Select seq gb|KX766028.1| Zika virus isolate R114916, complete genome 3615 3615 100% 0.0 98% KX766028.1 Select seq gb|KY014327.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME167-PLA polyprotein gene, complete cds 3613 3613 100% 0.0 98% KY014327.1 Select seq gb|KX806557.2| Zika virus isolate TS17-2016, complete genome 3613 3613 100% 0.0 98% KX806557.2 Select seq gb|KX766029.1| Zika virus isolate R116265, complete genome 3613 3613 100% 0.0 98% KX766029.1 Select seq gb|KX447517.1| Zika virus isolate 1_0038_PF polyprotein gene, complete cds 3613 3613 100% 0.0 98% KX447517.1 Select seq gb|KX447512.1| Zika virus isolate 1_0181_PF polyprotein gene, complete cds 3613 3613 100% 0.0 98% KX447512.1 Select seq gb|KU758877.1| Zika virus isolate 17271 polyprotein gene, complete cds 3613 3613 100% 0.0 98% KU758877.1 Select seq gb|KU758873.1| Zika virus isolate 18246 polyprotein gene, partial cds 3613 3613 100% 0.0 98% KU758873.1 Select seq gb|KX247646.1| Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome 3613 3613 100% 0.0 98% KX247646.1 Select seq gb|KX197192.1| Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome 3613 3613 100% 0.0 98% KX197192.1 Select seq gb|KU937936.1| Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds 3613 3613 100% 0.0 98% KU937936.1 Select seq gb|KX156776.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome 3613 3613 100% 0.0 98% KX156776.1 Select seq gb|KX156774.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome 3613 3613 100% 0.0 98% KX156774.1 Select seq gb|KU940228.1| Zika virus isolate Bahia07, partial genome 3613 3613 100% 0.0 98% KU940228.1 Select seq gb|KU501217.1| Zika virus strain 8375 polyprotein gene, complete cds 3613 3613 100% 0.0 98% KU501217.1 Select seq gb|KU501216.1| Zika virus strain 103344 polyprotein gene, complete cds 3613 3613 100% 0.0 98% KU501216.1 Select seq gb|KU365778.1| Zika virus strain BeH819015 polyprotein gene, complete cds 3613 3613 100% 0.0 98% KU365778.1 Select seq gb|KU312314.1| Zika virus isolate Z1106031 polyprotein gene, partial cds 3613 3613 100% 0.0 98% KU312314.1 Select seq gb|KU321639.1| Zika virus strain ZikaSPH2015, complete genome 3613 3613 100% 0.0 98% KU321639.1 Select seq gb|KY014309.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ47D1-PLA polyprotein gene, partial cds 3611 3611 100% 0.0 98% KY014309.1 Select seq gb|KY014301.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ107D1-URI polyprotein gene, complete cds 3611 3611 100% 0.0 98% KY014301.1 Select seq gb|KY014310.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME42-SER polyprotein gene, complete cds 3609 3609 100% 0.0 98% KY014310.1 Select seq gb|KY014319.1| Zika virus isolate Zika virus/H.sapiens-wt/HND/2016/HU-ME38-PLA polyprotein gene, complete cds 3608 3608 100% 0.0 98% KY014319.1 Select seq gb|KY014317.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-DQ28D1-URI polyprotein gene, complete cds 3608 3608 100% 0.0 98% KY014317.1 Select seq gb|KY014304.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0180-SER polyprotein gene, complete cds 3608 3608 100% 0.0 98% KY014304.1 Select seq dbj|LC190723.1| Zika virus genomic RNA, complete genome, strain: ZIKV/Hu/Yokohama/1/2016 3608 3608 100% 0.0 98% LC190723.1 Select seq gb|KX922707.1| Zika virus isolate ZIKV/Homo_sapiens/USA/2016/FL039U polyprotein gene, complete cds 3608 3608 100% 0.0 98% KX922707.1 Select seq gb|KX811222.1| Zika virus isolate Brazil_2015_MG, complete genome 3608 3608 100% 0.0 98% KX811222.1 Select seq gb|KU820897.5| Zika virus isolate FLR polyprotein gene, complete cds 3608 3608 100% 0.0 98% KU820897.5 Select seq gb|KX266255.1| Zika virus isolate ZIKV_SMGC-1, complete genome 3608 3608 100% 0.0 98% KX266255.1 Select seq gb|KX520666.1| Zika virus isolate HS-2015-BA-01 polyprotein gene, complete cds 3608 3608 100% 0.0 98% KX520666.1 Select seq gb|KX446950.1| Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome 3608 3608 100% 0.0 98% KX446950.1 Select seq gb|KU866423.2| Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds 3608 3608 100% 0.0 98% KU866423.2 Select seq gb|KU758869.1| Zika virus isolate 05211 polyprotein gene, partial cds 3608 3608 100% 0.0 98% KU758869.1 Select seq gb|KX253996.1| Zika virus isolate ZKC2/2016, complete genome 3608 3608 100% 0.0 98% KX253996.1 Select seq gb|KX185891.1| Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds 3608 3608 100% 0.0 98% KX185891.1 Select seq gb|KX156775.1| Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome 3608 3608 100% 0.0 98% KX156775.1 Select seq gb|KX117076.1| Zika virus isolate Zhejiang04, complete genome 3608 3608 100% 0.0 98% KX117076.1 Select seq gb|KX087102.1| Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome 3608 3608 100% 0.0 98% KX087102.1 Select seq gb|KU963796.1| Zika virus isolate SZ-WIV01 polyprotein gene, complete cds 3608 3608 100% 0.0 98% KU963796.1 Select seq gb|KU955589.1| Zika virus isolate Z16006 polyprotein gene, complete cds 3608 3608 100% 0.0 98% KU955589.1 Select seq gb|KU820899.2| Zika virus isolate ZJ03, complete genome 3608 3608 100% 0.0 98% KU820899.2 Select seq gb|KU729218.1| Zika virus isolate BeH828305 polyprotein gene, complete cds 3608 3608 100% 0.0 98% KU729218.1 Select seq gb|KU497555.1| Zika virus isolate Brazil-ZKV2015, complete genome 3608 3608 100% 0.0 98% KU497555.1 Select seq gb|KU707826.1| Zika virus isolate SSABR1, complete genome 3608 3608 100% 0.0 98% KU707826.1 Select seq gb|KU365779.1| Zika virus strain BeH819966 polyprotein gene, complete cds 3608 3608 100% 0.0 98% KU365779.1 Select seq gb|KY014297.1| Zika virus isolate Zika virus/H.sapiens-wt/BRA/2016/FC-6864-URI polyprotein gene, complete cds 3606 3606 100% 0.0 98% KY014297.1 Select seq gb|KU940224.1| Zika virus isolate Bahia09, partial genome 3606 3606 100% 0.0 98% KU940224.1 Select seq gb|KY014321.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0115-SER polyprotein gene, complete cds 3604 3604 100% 0.0 98% KY014321.1 Select seq gb|KY014303.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0127-SER polyprotein gene, complete cds 3604 3604 100% 0.0 98% KY014303.1 Select seq gb|KY014300.1| Zika virus isolate Zika virus/H.sapiens-wt/DOM/2016/BB-0208-SER polyprotein gene, complete cds 3604 3604 100% 0.0 98% KY014300.1 Select seq gb|KX827309.1| Zika virus isolate ZKA-16-291 polyprotein gene, complete cds 3604 3604 100% 0.0 98% KX827309.1 Select seq gb|KX813683.1| Zika virus isolate ZKA-16-097 polyprotein gene, complete cds 3604 3604 100% 0.0 98% KX813683.1 Select seq gb|KX377337.1| Zika virus strain PRVABC-59, complete genome 3604 3604 100% 0.0 98% KX377337.1 Select seq gb|KU758872.1| Zika virus isolate 01170 polyprotein gene, partial cds 3604 3604 100% 0.0 98% KU758872.1 Select seq gb|KU758868.1| Zika virus isolate 27229 polyprotein gene, partial cds 3604 3604 100% 0.0 98% KU758868.1 Select seq gb|KU870645.1| Zika virus isolate FB-GWUH-2016, complete genome 3604 3604 100% 0.0 98% KU870645.1 Select seq gb|KU926309.1| Zika virus isolate Rio-U1, complete genome 3604 3604 100% 0.0 98% KU926309.1 Select seq gb|KU853013.1| Zika virus isolate Dominican Republic/2016/PD2, complete genome 3604 3604 100% 0.0 98% KU853013.1 Select seq gb|KU853012.1| Zika virus isolate Dominican Republic/2016/PD1, complete genome 3604 3604 100% 0.0 98% KU853012.1 Select seq gb|KU729217.2| Zika virus isolate BeH823339 polyprotein gene, complete cds 3604 3604 100% 0.0 98% KU729217.2 Select seq gb|KU501215.1| Zika virus strain PRVABC59, complete genome 3604 3604 100% 0.0 98% KU501215.1 Select seq gb|KU365780.1| Zika virus strain BeH815744 polyprotein gene, complete cds 3604 3604 100% 0.0 98% KU365780.1 Select seq gb|KU365777.1| Zika virus strain BeH818995 polyprotein gene, complete cds 3604 3604 100% 0.0 98% KU365777.1 Select seq gb|KY014322.1| Zika virus isolate Zika virus/A.aegypti-wt/USA/2016/FL-03-MOS polyprotein gene, complete cds 3599 3599 100% 0.0 98% KY014322.1 Link to comment Share on other sites More sharing options...
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