niman Posted December 26, 2016 Report Share Posted December 26, 2016 French Agency for Food, Environmental and Occupational Health has released two sets of sequences from a duck from Nord-Pas-De Calais. Link to comment Share on other sites More sharing options...
niman Posted December 26, 2016 Author Report Share Posted December 26, 2016 Isolate name: A/decoy_duck/France/161104e/2016 Isolate ID: EPI_ISL_239997 Passage details/history: field sample Type: A / H5N8 Lineage: Sample information Collection date: 2016-11-26 Host Duck Additional host information: Domestic status: Is vaccinated: Location: France / Region Nord-Pas-De Calais / Departement du Pas-de-Calais Additional location information: Health status: Specimen source: Tracheal swab Strain or commercial product name used for vaccination: Institute information Originating lab: Anses (Ploufragan-Plouzané) Sample ID given by the sample provider: Address: Anses (Ploufragan-Plouzané) Rue de Beaucemaine 22440 Ploufragan France Submitting lab: French Agency for Food, Environmental and Occupational Health Sample ID given by the submitting laboratory: Authors: Address: French Agency for Food, Environmental and Occupational Health Laboratoire de Ploufragan-Plouzané rue des Fusilles 22440 Ploufragan France Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/decoy_duck/France/161104e/2016 2280 EPI869684 PB2 A/duck/France/161108h/2016 2341 EPI869676 PB1 A/decoy_duck/France/161104e/2016 2297 EPI869685 PB1 A/duck/France/161108h/2016 2297 EPI869677 PA A/duck/France/161108h/2016 2228 EPI869678 PA A/decoy_duck/France/161104e/2016 2151 EPI869686 HA A/duck/France/161108h/2016 1772 EPI869679 HA A/decoy_duck/France/161104e/2016 1704 EPI869687 NP A/duck/France/161108h/2016 1565 EPI869680 NP A/decoy_duck/France/161104e/2016 1463 EPI869688 NA A/decoy_duck/France/161104e/2016 1411 EPI869689 NA A/duck/France/161108h/2016 1413 EPI869681 MP A/duck/France/161108h/2016 982 EPI869682 MP A/decoy_duck/France/161104e/2016 982 EPI869690 NS A/duck/France/161108h/2016 882 EPI869683 NS A/decoy_duck/France/161104e/2016 835 EPI869691 Submitter information Submitter: Briand, Francois-Xavier Submission Date: 2016-12-26 Last modifier: Briand, Francois-Xavier Last modified: 2016-12-26 Address: French Agency for Food, Environmental and Occupational Health Laboratoire de Ploufragan-Plouzané rue des Fusilles 22440 Ploufragan France Link to comment Share on other sites More sharing options...
niman Posted December 26, 2016 Author Report Share Posted December 26, 2016 Align Segment-ID Name Score E-Value Identity EPI869679 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3147.8 0.000000e+00 1704/1704 (100%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3136.7 0.000000e+00 1702/1704 (99%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3131.2 0.000000e+00 1701/1704 (99%) EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1693/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1693/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3086.9 0.000000e+00 1694/1705 (99%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3081.3 0.000000e+00 1692/1704 (99%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3075.8 0.000000e+00 1691/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3070.3 0.000000e+00 1690/1704 (99%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3064.7 0.000000e+00 1689/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774466 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI774442 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1689/1705 (99%) EPI774352 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA) 3059.2 0.000000e+00 1688/1704 (99%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774498 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774426 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774361 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 4 (HA) 3053.6 0.000000e+00 1687/1704 (99%) EPI774344 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3048.1 0.000000e+00 1686/1704 (98%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2981.6 0.000000e+00 1674/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1672/1704 (98%) EPI675774 A/duck/Liaoning/S1001/2014 (A/H5N8) segment 4 (HA) 2970.5 0.000000e+00 1672/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2959.5 0.000000e+00 1670/1704 (98%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2948.4 0.000000e+00 1668/1704 (97%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2937.3 0.000000e+00 1666/1704 (97%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2931.8 0.000000e+00 1665/1704 (97%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2926.2 0.000000e+00 1664/1704 (97%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1664/1705 (97%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2920.7 0.000000e+00 1663/1704 (97%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2915.1 0.000000e+00 1662/1704 (97%) EPI860239 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1598/1609 (99%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2911.4 0.000000e+00 1660/1702 (97%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2909.6 0.000000e+00 1662/1705 (97%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2909.6 0.000000e+00 1661/1704 (97%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2909.6 0.000000e+00 1661/1704 (97%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2904.1 0.000000e+00 1660/1704 (97%) EPI749889 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 4 (HA) 2898.5 0.000000e+00 1660/1705 (97%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2893.0 0.000000e+00 1658/1704 (97%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2887.4 0.000000e+00 1658/1705 (97%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2881.9 0.000000e+00 1656/1704 (97%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2876.4 0.000000e+00 1655/1704 (97%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2876.4 0.000000e+00 1656/1705 (97%) Link to comment Share on other sites More sharing options...
niman Posted December 26, 2016 Author Report Share Posted December 26, 2016 Align Segment-ID Name Score E-Value Identity EPI869681 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2580.9 0.000000e+00 1403/1406 (99%) EPI864747 A/mute swan/Croatia/85/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI869689 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI868850 A/turkey/England/052131/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774500 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774468 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774452 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774444 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774436 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774420 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774412 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774404 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774388 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774380 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774371 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774363 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774346 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774337 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774320 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774312 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774304 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774270 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774261 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774253 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774244 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774195 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774187 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774144 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774136 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774115 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2549.5 0.000000e+00 1397/1406 (99%) EPI863867 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI863851 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI863836 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI863828 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI858846 A/painted stork/India/10CA03/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774492 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774484 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774477 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774460 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774396 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1395/1403 (99%) EPI774354 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774328 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774296 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774279 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1395/1403 (99%) EPI774178 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774170 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774161 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI863859 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 6 (NA) 2544.0 0.000000e+00 1396/1406 (99%) EPI774508 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774428 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774288 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774220 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774212 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1394/1403 (99%) EPI774152 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1397/1407 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1395/1406 (99%) EPI774236 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1396/1407 (99%) EPI774228 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1395/1407 (99%) EPI858838 A/duck/India/10CA01/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI774203 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2503.3 0.000000e+00 1389/1406 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2470.1 0.000000e+00 1383/1406 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2459.0 0.000000e+00 1381/1406 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1377/1406 (97%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2425.8 0.000000e+00 1375/1406 (97%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2420.2 0.000000e+00 1374/1406 (97%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1374/1407 (97%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1373/1406 (97%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1372/1406 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1373/1407 (97%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1371/1406 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1372/1407 (97%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1370/1406 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1371/1407 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1369/1406 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2390.7 0.000000e+00 1350/1378 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1368/1406 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1368/1407 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1367/1406 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1367/1406 (97%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2375.9 0.000000e+00 1366/1406 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2353.8 0.000000e+00 1357/1398 (97%) EPI749888 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1351/1394 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1359/1406 (96%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1352/1395 (96%) EPI718279 A/ostrich/Korea/H829/2014 (A/H5N8) segment 6 (NA) 2331.6 0.000000e+00 1358/1406 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 26, 2016 Author Report Share Posted December 26, 2016 Align Segment-ID Name Score E-Value Identity EPI869682 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1796.1 0.000000e+00 976/978 (99%) EPI868851 A/turkey/England/052131/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI869690 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI863852 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 7 (MP) 1783.1 0.000000e+00 976/982 (99%) EPI863837 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 7 (MP) 1783.1 0.000000e+00 976/982 (99%) EPI863829 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 7 (MP) 1783.1 0.000000e+00 976/982 (99%) EPI863868 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI826909 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774437 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774364 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774297 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI774221 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP) 1775.8 0.000000e+00 975/982 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774501 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774485 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774453 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774413 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774397 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774347 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774338 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774330 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774321 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774271 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774245 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774229 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774213 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774493 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774478 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774405 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774381 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774355 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774289 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774145 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774509 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774421 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774389 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774313 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774280 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774237 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774204 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774179 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774162 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774153 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774137 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 973/983 (98%) EPI858847 A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774305 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774262 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI774254 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI774196 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774123 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774116 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI858840 A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774470 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI774429 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774372 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI774188 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774171 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774461 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1725.9 0.000000e+00 966/982 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI461550 A/duck/Hunan/S11090/2012 (A/H4N6) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI704449 A/duck/Mongolia/996/2015 (A/H3N8) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI704417 A/duck/Mongolia/543/2015 (A/H4N6) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI601676 A/duck/Jiangxi/34864/2013 (A/H0) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI599826 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 7 (MP) 1698.2 0.000000e+00 961/982 (97%) EPI548388 A/chicken/Jilin/SD001/2014 (A/H9N2) segment 7 (MP) 1694.5 0.000000e+00 960/982 (97%) EPI749996 A/environment/sichuan/322074/2015 (A/H4N6) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%) EPI682981 A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI682951 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%) EPI682950 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%) EPI682949 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%) EPI590087 A/duck/Quang Ninh/90c112/2013 (A/H3N2) segment 7 (MP) 1692.7 0.000000e+00 960/982 (97%) EPI773768 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI753587 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI704294 A/duck/Mongolia/127/2015 (A/H4N6) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI704270 A/duck/Mongolia/101/2015 (A/H4N6) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602450 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602443 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602436 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602429 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602405 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602398 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602391 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI602384 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) Link to comment Share on other sites More sharing options...
niman Posted December 26, 2016 Author Report Share Posted December 26, 2016 Align Segment-ID Name Score E-Value Identity EPI869676 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI867457 A/mute swan/Croatia/70/2016 (A/H5N8) segment 1 (PB2) 4200.4 0.000000e+00 2278/2280 (99%) EPI618102 A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 1 (PB2) 3940.0 0.000000e+00 2231/2280 (97%) EPI749574 A/Environment/Chongqing/45208/2015 (A/H5N6) segment 1 (PB2) 3934.5 0.000000e+00 2230/2280 (97%) EPI527564 A/common goldeneye/Mongolia/1216/2010 (A/H1N1) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%) EPI527545 A/tufted duck/Mongolia/1409/2010 (A/H1N1) segment 1 (PB2) 3917.9 0.000000e+00 2227/2280 (97%) EPI527563 A/common goldeneye/Mongolia/1238/2010 (A/H1N1) segment 1 (PB2) 3906.8 0.000000e+00 2225/2280 (97%) EPI618117 A/black-headed gull/Republic of Georgia/1/2010 (A/H11N1) segment 1 (PB2) 3895.7 0.000000e+00 2223/2280 (97%) EPI324555 A/quail/Lebanon/273/2010 (A/H9N2) segment 1 (PB2) 3884.6 0.000000e+00 2221/2280 (97%) EPI617950 A/black-headed gull/Republic of Georgia/2/2011 (A/H9N1) segment 1 (PB2) 3868.0 0.000000e+00 2218/2280 (97%) EPI692509 A/duck/Hunan/S1166/2010 (A/H4N6) segment 1 (PB2) 3834.8 0.000000e+00 2212/2280 (97%) EPI750103 A/chicken/Taiwan/01174/2015 (A/H5N3) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI588965 A/chicken/Taiwan/a174/2015 (A/H5N3) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI617839 A/black-headed gull/Republic of Georgia/9/2012 (A/H2N5) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI463584 A/tundra swan/Shimane/3211A001/2011 (A/H5N2) segment 1 (PB2) 3823.7 0.000000e+00 2210/2280 (96%) EPI750183 A/goose/Taiwan/01038/2015 (A/H5N3) segment 1 (PB2) 3818.1 0.000000e+00 2211/2282 (96%) EPI588973 A/duck/Taiwan/a068/2015 (A/H5N8) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI574291 A/duck/Vietnam/LBM48/2011 (A/H3N2) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%) EPI401796 A/canvasback/Xianghai/428/2011 (A/H5N2) segment 1 (PB2) 3812.6 0.000000e+00 2208/2280 (96%) EPI617989 A/mallard/Republic of Georgia/3/2011 (A/H3N8) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%) EPI560058 A/mallard/Novomychalivka/2-23-12/2010 (A/H15N7) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%) EPI469129 A/wild waterfowl/Hong Kong/MPM3375/2011 (A/H7N6) segment 1 (PB2) 3807.1 0.000000e+00 2207/2280 (96%) EPI750185 A/goose/Taiwan/01042/2015 (A/H5N3) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%) EPI750111 A/duck/Taiwan/A3400/2015 (A/H5N8) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%) EPI527553 A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 1 (PB2) 3801.5 0.000000e+00 2206/2280 (96%) EPI372391 A/Egyptian goose/Egypt/05588-NAMRU3/2006 (A/H7N7) segment 1 (PB2) 3801.5 0.000000e+00 2207/2281 (96%) EPI617797 A/black-headed gull/Republic of Georgia/7/2012 (A/H2N7) segment 1 (PB2) 3790.4 0.000000e+00 2205/2281 (96%) EPI596394 A/muscovy duck/Vietnam/LBM115/2012 (A/H3N2) segment 1 (PB2) 3784.9 0.000000e+00 2203/2280 (96%) EPI775005 A/duck/Hebei/B1647-1/2011 (A/H3N2) segment 1 (PB2) 3779.4 0.000000e+00 2204/2282 (96%) EPI775000 A/duck/Shanghai/120-1/2009 (A/H3N8) segment 1 (PB2) 3779.4 0.000000e+00 2204/2282 (96%) EPI395159 A/duck/Vietnam/LBM1/2011 (A/H4N6) segment 1 (PB2) 3779.4 0.000000e+00 2203/2281 (96%) EPI692469 A/duck/Henan/S4179/2009 (A/H4N6) segment 1 (PB2) 3773.8 0.000000e+00 2202/2281 (96%) EPI619253 A/mallard/Sweden/5994/2005 (A/H7N7) segment 1 (PB2) 3773.8 0.000000e+00 2202/2281 (96%) EPI387906 A/mallard/Korea/1041/2010 (A/H10N8) segment 1 (PB2) 3773.8 0.000000e+00 2201/2280 (96%) EPI361736 A/lesser whistling-duck/Thailand/CU-W3946/2010 (A/H12N1) segment 1 (PB2) 3773.8 0.000000e+00 2183/2253 (96%) EPI618220 A/mallard/Sweden/5944/2005 (A/H7N7) segment 1 (PB2) 3768.3 0.000000e+00 2201/2281 (96%) EPI619239 A/mallard/Sweden/5927/2005 (A/H0) segment 1 (PB2) 3762.7 0.000000e+00 2200/2281 (96%) EPI262712 A/aquatic bird/Korea/w347/2008 (A/H5N2) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI602452 A/duck/Jiangxi/33695/2013 (A/H10N3) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI599870 A/duck/Jiangxi/33778/2013 (A/H10N3) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI508037 A/wild duck/Korea/CSM42-34/2011 (A/H7N9) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI508036 A/wild duck/Korea/CSM42-1/2011 (A/H7N9) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI461612 A/duck/Hunan/S11893/2012 (A/H4N6) segment 1 (PB2) 3751.7 0.000000e+00 2197/2280 (96%) EPI703416 A/duck/Yunan/V286/2012 (A/H1N2) segment 1 (PB2) 3749.8 0.000000e+00 2184/2261 (96%) EPI602445 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI602438 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI602400 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI602379 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI602372 A/duck/Jiangxi/33699/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI599877 A/duck/Jiangxi/33779/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI599856 A/duck/Jiangxi/33744/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI599835 A/duck/Jiangxi/33641/2013 (A/H10N3) segment 1 (PB2) 3746.1 0.000000e+00 2196/2280 (96%) EPI602386 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 1 (PB2) 3742.4 0.000000e+00 2195/2280 (96%) EPI602326 A/duck/Jiangxi/33765/2013 (A/H10N3) segment 1 (PB2) 3742.4 0.000000e+00 2195/2280 (96%) EPI361726 A/lesser whistling-duck/Thailand/CU-W3941/2010 (A/H12N1) segment 1 (PB2) 3742.4 0.000000e+00 2175/2249 (96%) EPI602424 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI602393 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI602347 A/duck/Jiangxi/33777/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI602340 A/duck/Jiangxi/33775/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI602333 A/duck/Jiangxi/33769/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI599863 A/duck/Jiangxi/33747/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI599842 A/duck/Jiangxi/33653/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI599828 A/duck/Jiangxi/33629/2013 (A/H10N3) segment 1 (PB2) 3740.6 0.000000e+00 2195/2280 (96%) EPI372493 A/pied avocet/Ukraine/05848-NAMRU3/2006 (A/H10N4) segment 1 (PB2) 3740.6 0.000000e+00 2197/2282 (96%) EPI602431 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 1 (PB2) 3735.0 0.000000e+00 2193/2280 (96%) EPI602407 A/duck/Jiangxi/33763/2013 (A/H10N3) segment 1 (PB2) 3735.0 0.000000e+00 2194/2280 (96%) EPI703415 A/duck/Fujian/JF47/2014 (A/H1N1) segment 1 (PB2) 3733.2 0.000000e+00 2181/2261 (96%) EPI599849 A/duck/Jiangxi/33701/2013 (A/H10N3) segment 1 (PB2) 3729.5 0.000000e+00 2194/2281 (96%) EPI600182 A/migratory duck/Jiangxi/33520/2013 (A/H10N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI600176 A/migratory duck/Jiangxi/33238/2013 (A/H10N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI600170 A/migratory duck/Jiangxi/33195/2013 (A/H10N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI600162 A/migratory duck/Jiangxi/33158/2013 (A/H10N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI600156 A/migratory duck/Jiangxi/33038/2013 (A/H10N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI591921 A/wild bird/Jiangxi/35982/2013 (A/H7N7) segment 1 (PB2) 3724.0 0.000000e+00 2192/2280 (96%) EPI361746 A/lesser whistling-duck/Thailand/CU-W3947/2010 (A/H12N1) segment 1 (PB2) 3720.3 0.000000e+00 2164/2239 (96%) EPI372280 A/shoveler/Egypt/00597-NAMRU3/2004 (A/H7N1) segment 1 (PB2) 3718.4 0.000000e+00 2192/2281 (96%) EPI395168 A/muscovy duck/Vietnam/LBM14/2011 (H3N2) (A/H3N2) segment 1 (PB2) 3712.9 0.000000e+00 2191/2281 (96%) EPI361718 A/watercock/Thailand/CU-W3699/2009 (A/H12N1) segment 1 (PB2) 3709.2 0.000000e+00 2176/2259 (96%) EPI372509 A/garganey/Ukraine/05835-NAMRU3/2006 (A/H8N4) segment 1 (PB2) 3707.3 0.000000e+00 2191/2282 (96%) EPI372383 A/teal/Egypt/13203-NAMRU3/2006 (A/H6N2) segment 1 (PB2) 3701.8 0.000000e+00 2190/2282 (95%) EPI363564 A/wild duck/Jiangxi/8462/2006 (A/H6N1) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI296631 A/mallard/Sweden/95/2005 (A/H7N7) segment 1 (PB2) 3701.8 0.000000e+00 2189/2281 (95%) EPI591915 A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 1 (PB2) 3696.3 0.000000e+00 2187/2280 (95%) EPI372368 A/shoveler/Egypt/13251-NAMRU3/2006 (A/H6N2) segment 1 (PB2) 3696.3 0.000000e+00 2189/2282 (95%) EPI372288 A/shoveler/Egypt/00600-NAMRU3/2004 (A/H10N7) segment 1 (PB2) 3696.3 0.000000e+00 2188/2281 (95%) EPI591909 A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 1 (PB2) 3690.7 0.000000e+00 2186/2280 (95%) EPI372304 A/teal/Egypt/00835-NAMRU3/2004 (A/H7N7) segment 1 (PB2) 3690.7 0.000000e+00 2187/2281 (95%) EPI372296 A/teal/Egypt/00688-NAMRU3/2004 (A/H11N9) segment 1 (PB2) 3690.7 0.000000e+00 2188/2282 (95%) EPI270059 A/aquatic bird/India/NIV-17095/2007 (A/H11N1) segment 1 (PB2) 3690.7 0.000000e+00 2187/2281 (95%) EPI618307 A/mallard/Sweden/68621/2007 (A/H11N9) segment 1 (PB2) 3685.2 0.000000e+00 2187/2282 (95%) EPI513753 A/mallard/Sweden/79978/2008 (A/H4N6) segment 1 (PB2) 3679.6 0.000000e+00 2186/2282 (95%) EPI618293 A/mallard/Sweden/69639/2007 (A/H11N9) segment 1 (PB2) 3674.1 0.000000e+00 2185/2282 (95%) EPI618544 A/mallard/Sweden/101754/2009 (A/H0) segment 1 (PB2) 3668.6 0.000000e+00 2184/2282 (95%) EPI514604 A/mallard/Sweden/50108/2006 (A/H4N6) segment 1 (PB2) 3668.6 0.000000e+00 2183/2281 (95%) EPI178535 A/Duck/Italy/62330/2006 (A/H10N7) segment 1 (PB2) 3668.6 0.000000e+00 2184/2282 (95%) EPI618253 A/mallard/Sweden/79390/2008 (A/H11N9) segment 1 (PB2) 3663.0 0.000000e+00 2183/2282 (95%) EPI310338 A/duck/Zambia/04/2008 (A/H3N8) segment 1 (PB2) 3663.0 0.000000e+00 2183/2282 (95%) EPI704296 A/duck/Mongolia/141/2015 (A/H0N2) segment 1 (PB2) 3657.5 0.000000e+00 2180/2280 (95%) EPI372320 A/shoveler/Egypt/09864-NAMRU3/2004 (A/H7N7) segment 1 (PB2) 3657.5 0.000000e+00 2182/2282 (95%) EPI704500 A/duck/Mongolia/326/2015 (A/H10N3) segment 1 (PB2) 3651.9 0.000000e+00 2179/2280 (95%) Link to comment Share on other sites More sharing options...
niman Posted December 26, 2016 Author Report Share Posted December 26, 2016 Align Segment-ID Name Score E-Value Identity EPI869677 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4200.4 0.000000e+00 2274/2274 (100%) EPI869084 A/mute swan/Croatia/70/2016 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2264/2271 (99%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4156.1 0.000000e+00 2266/2274 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI773755 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 2 (PB1) 4150.5 0.000000e+00 2265/2274 (99%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4135.8 0.000000e+00 2262/2274 (99%) EPI774488 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774481 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774408 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774400 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774376 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774367 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774292 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774284 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774275 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774265 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774224 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774216 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI774208 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 2 (PB1) 4133.9 0.000000e+00 2262/2274 (99%) EPI863832 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 2 (PB1) 4132.1 0.000000e+00 2261/2274 (99%) EPI863824 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 2 (PB1) 4132.1 0.000000e+00 2261/2274 (99%) EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4130.2 0.000000e+00 2261/2274 (99%) EPI868846 A/turkey/England/052131/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI863847 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2260/2274 (99%) EPI774496 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774424 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774417 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774359 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774350 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774333 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774324 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774316 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774257 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774249 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774199 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2261/2274 (99%) EPI774342 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 2 (PB1) 4122.8 0.000000e+00 2260/2274 (99%) EPI858842 A/painted stork/India/10CA03/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI836612 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774448 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774440 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774432 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2260/2275 (99%) EPI774191 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774140 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI774129 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 2 (PB1) 4117.3 0.000000e+00 2259/2274 (99%) EPI836604 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774456 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774240 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774232 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774183 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774174 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774157 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774119 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774111 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 2 (PB1) 4111.8 0.000000e+00 2258/2274 (99%) EPI774473 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774464 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774392 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774384 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774300 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774166 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI774148 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 2 (PB1) 4106.2 0.000000e+00 2257/2274 (99%) EPI782721 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI774308 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 2 (PB1) 4100.7 0.000000e+00 2256/2274 (99%) EPI858834 A/duck/India/10CA01/2016 (A/H5N8) segment 2 (PB1) 4095.1 0.000000e+00 2255/2274 (99%) EPI823754 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 2 (PB1) 4071.1 0.000000e+00 2250/2275 (98%) EPI692342 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 2 (PB1) 3934.5 0.000000e+00 2226/2274 (97%) EPI692334 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 2 (PB1) 3928.9 0.000000e+00 2225/2274 (97%) EPI704338 A/duck/Mongolia/179/2015 (A/H3N8) segment 2 (PB1) 3906.8 0.000000e+00 2222/2275 (97%) EPI513368 A/mallard/Sweden/101900/2009 (A/H4N3) segment 2 (PB1) 3906.8 0.000000e+00 2221/2274 (97%) EPI540205 A/environment/Bangladesh/1002/2010 (A/H11N3) segment 2 (PB1) 3901.2 0.000000e+00 2220/2274 (97%) EPI823913 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 2 (PB1) 3895.7 0.000000e+00 2220/2275 (97%) EPI600850 A/duck/Jiangxi/22960/2008 (A/H10N8) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%) EPI540189 A/duck/Bangladesh/1729/2010 (A/H11N3) segment 2 (PB1) 3895.7 0.000000e+00 2219/2274 (97%) EPI823905 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI823897 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI823785 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 2 (PB1) 3890.2 0.000000e+00 2219/2275 (97%) EPI599808 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI540181 A/duck/Bangladesh/1728/2010 (A/H11N3) segment 2 (PB1) 3890.2 0.000000e+00 2218/2274 (97%) EPI540173 A/duck/Bangladesh/1727/2010 (A/H11N3) segment 2 (PB1) 3884.6 0.000000e+00 2217/2274 (97%) EPI469416 A/duck/Yunnan/2908/2009 (A/H11N9) segment 2 (PB1) 3875.4 0.000000e+00 2212/2269 (97%) EPI527601 A/northern shoveler/Mongolia/907V/2009 (A/H10N8) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI372416 A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 2 (PB1) 3873.5 0.000000e+00 2215/2274 (97%) EPI540253 A/duck/Bangladesh/31687/2010 (A/H1N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI540229 A/duck/Bangladesh/1687/2010 (A/H1N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI527654 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI527639 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI372440 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 2 (PB1) 3868.0 0.000000e+00 2214/2274 (97%) EPI527641 A/ruddy shelduck/Mongolia/894V/2009 (A/H4N3) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%) EPI476095 A/greylag goose/Iceland/0953/2011 (A/H6N5) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%) EPI476083 A/greylag goose/Iceland/0948/2011 (A/H6N5) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%) EPI476028 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 2 (PB1) 3862.5 0.000000e+00 2213/2274 (97%) EPI704321 A/duck/Mongolia/173/2015 (A/H3N8) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%) EPI540365 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 2 (PB1) 3856.9 0.000000e+00 2213/2275 (97%) EPI601832 A/duck/Jiangxi/17142/2013 (A/H0) segment 2 (PB1) 3855.1 0.000000e+00 2200/2257 (97%) EPI704444 A/duck/Mongolia/996/2015 (A/H3N8) segment 2 (PB1) 3845.8 0.000000e+00 2211/2275 (97%) EPI583945 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 2 (PB1) 3845.8 0.000000e+00 2211/2275 (97%) EPI704518 A/duck/Mongolia/518/2015 (A/H10N3) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI681228 A/goose/Zhejiang/112080/2014 (A/H5N6) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI527616 A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 2 (PB1) 3840.3 0.000000e+00 2209/2274 (97%) EPI704412 A/duck/Mongolia/543/2015 (A/H4N6) segment 2 (PB1) 3834.8 0.000000e+00 2209/2275 (97%) EPI704354 A/duck/Mongolia/200/2015 (A/H3N8) segment 2 (PB1) 3834.8 0.000000e+00 2208/2274 (97% Link to comment Share on other sites More sharing options...
niman Posted December 26, 2016 Author Report Share Posted December 26, 2016 Descriptions Align Segment-ID Name Score E-Value Identity EPI869678 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI867456 A/mute swan/Croatia/70/2016 (A/H5N8) segment 3 (PA) 3923.4 0.000000e+00 2140/2148 (99%) EPI774258 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI774250 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 3 (PA) 3895.7 0.000000e+00 2137/2151 (99%) EPI774393 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774184 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774120 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774112 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 3 (PA) 3890.2 0.000000e+00 2136/2151 (99%) EPI774497 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774457 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774449 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774441 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774385 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774309 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774301 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774276 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774266 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774241 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774233 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774200 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774192 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774167 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774158 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774149 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774141 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774131 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI773756 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 3 (PA) 3884.6 0.000000e+00 2135/2151 (99%) EPI774505 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774489 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774482 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774474 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774465 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774433 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774425 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774377 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774351 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774334 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774325 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774317 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774293 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774285 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774225 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774217 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774209 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 3 (PA) 3879.1 0.000000e+00 2134/2151 (99%) EPI774418 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774409 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774401 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774360 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774343 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774175 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 3 (PA) 3873.5 0.000000e+00 2133/2151 (99%) EPI774368 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 3 (PA) 3868.0 0.000000e+00 2132/2151 (99%) EPI836613 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI836605 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI823755 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI823747 A/wild duck/Tyva/35/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI823459 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 3 (PA) 3862.5 0.000000e+00 2131/2151 (99%) EPI858835 A/duck/India/10CA01/2016 (A/H5N8) segment 3 (PA) 3834.8 0.000000e+00 2126/2151 (98%) EPI515113 A/muscovy duck/Vietnam/LBM529/2013 (A/H3N8) segment 3 (PA) 3790.4 0.000000e+00 2119/2152 (98%) EPI704445 A/duck/Mongolia/996/2015 (A/H3N8) segment 3 (PA) 3762.7 0.000000e+00 2114/2152 (98%) EPI704282 A/duck/Mongolia/118/2015 (A/H4N6) segment 3 (PA) 3757.2 0.000000e+00 2113/2152 (98%) EPI704306 A/duck/Mongolia/154/2015 (A/H0N2) segment 3 (PA) 3751.7 0.000000e+00 2112/2152 (98%) EPI693713 A/duck/Mongolia/66/2015 (A/H10N2) segment 3 (PA) 3751.7 0.000000e+00 2112/2152 (98%) EPI704502 A/duck/Mongolia/326/2015 (A/H10N3) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%) EPI704480 A/duck/Mongolia/245/2015 (A/H10N3) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%) EPI704397 A/duck/Mongolia/520/2015 (A/H1N1) segment 3 (PA) 3746.1 0.000000e+00 2111/2152 (98%) EPI704298 A/duck/Mongolia/141/2015 (A/H0N2) segment 3 (PA) 3740.6 0.000000e+00 2110/2152 (98%) EPI704429 A/duck/Mongolia/769/2015 (A/H4N6) segment 3 (PA) 3735.0 0.000000e+00 2110/2153 (98%) EPI693697 A/duck/Mongolia/20/2015 (A/H3N8) segment 3 (PA) 3735.0 0.000000e+00 2109/2152 (98%) EPI704266 A/duck/Mongolia/101/2015 (A/H4N6) segment 3 (PA) 3724.0 0.000000e+00 2107/2152 (97%) EPI704290 A/duck/Mongolia/127/2015 (A/H4N6) segment 3 (PA) 3718.4 0.000000e+00 2106/2152 (97%) EPI866092 A/duck/Korea/ES2/2016(H5N6) (A/H5N6) segment 3 (PA) 3696.3 0.000000e+00 2102/2152 (97%) EPI866131 A/mandarin duck/Korea/WB246/2016(H5N6) (A/H5N6) segment 3 (PA) 3685.2 0.000000e+00 2100/2152 (97%) EPI866084 A/chicken/Korea/HN1/2016(H5N6) (A/H5N6) segment 3 (PA) 3685.2 0.000000e+00 2100/2152 (97%) EPI614278 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI614284 A/mallard/Republic of Georgia/1/2010 (A/H10N7) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI377637 A/northern shoveler/Georgia/1/2010 (A/H2N3) segment 3 (PA) 3640.9 0.000000e+00 2091/2151 (97%) EPI614253 A/garganey/Republic of Georgia/1/2011 (A/H4N2) segment 3 (PA) 3635.3 0.000000e+00 2091/2152 (97%) EPI614286 A/mallard/Republic of Georgia/3/2010 (A/H7N3) segment 3 (PA) 3629.8 0.000000e+00 2089/2151 (97%) EPI614298 A/common coot/Republic of Georgia/1/2010 (A/H6N2) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI493025 A/wild waterfowl/Dongting/C2383/2012 (A/H1N2) segment 3 (PA) 3579.9 0.000000e+00 2080/2151 (96%) EPI692567 A/duck/Sichuan/S4202/2011 (A/H4N2) segment 3 (PA) 3574.4 0.000000e+00 2079/2151 (96%) EPI363462 A/duck/Guangxi/1157/2006 (A/H6N2) segment 3 (PA) 3574.4 0.000000e+00 2079/2151 (96%) EPI316751 A/mallard/Czech Republic/13438-29K/2010 (A/H11N9) segment 3 (PA) 3574.4 0.000000e+00 2079/2151 (96%) EPI614294 A/tufted duck/Republic of Georgia/1/2012 (A/H2N3) segment 3 (PA) 3568.8 0.000000e+00 2078/2151 (96%) EPI363470 A/duck/Guangxi/1248/2006 (A/H6N2) segment 3 (PA) 3563.3 0.000000e+00 2077/2151 (96%) EPI749127 A/environment/Chongqing/02412/2012 (A/H5N1) segment 3 (PA) 3557.8 0.000000e+00 2076/2151 (96%) EPI296255 A/wild duck/Korea/SH60/2004 (A/H1N1) segment 3 (PA) 3552.2 0.000000e+00 2076/2152 (96%) EPI118295 A/duck/Jiang Xi/2374/2005 (A/H3N6) segment 3 (PA) 3552.2 0.000000e+00 2075/2151 (96%) EPI538470 A/common shelduck/Mongolia/2187/2011 (A/H5N3) segment 3 (PA) 3546.7 0.000000e+00 2075/2152 (96%) EPI538433 A/wild bird/Mongolia/2066/2011 (A/H5N3) segment 3 (PA) 3546.7 0.000000e+00 2075/2152 (96%) EPI363454 A/duck/Guangxi/1074/2006 (A/H6N2) segment 3 (PA) 3546.7 0.000000e+00 2074/2151 (96%) EPI296257 A/wild duck/Korea/CSM38/2004 (A/H1N1) segment 3 (PA) 3546.7 0.000000e+00 2074/2151 (96%) EPI268817 A/duck/Hunan/177/2005 (A/H6N1) segment 3 (PA) 3546.7 0.000000e+00 2074/2151 (96%) EPI118289 A/duck/Jiang Xi/1286/2005 (A/H5N2) segment 3 (PA) 3546.7 0.000000e+00 2074/2151 (96%) EPI773764 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI262642 A/aquatic bird/Korea/w74/2005 (A/H5N2) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI262641 A/aquatic bird/Korea/w54/2005 (A/H5N2) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI140261 A/migratory duck/Jiang Xi/6568/2004 (A/H4N6) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI360053 A/duck/Suphanburi/AI157/2005 (A/H6N1) segment 3 (PA) 3535.6 0.000000e+00 2072/2151 (96%) EPI345928 A/whistling swan/Shimane/580/2002 (A/H5N3) segment 3 (PA) 3535.6 0.000000e+00 2073/2152 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Align Segment-ID Name Score E-Value Identity EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3144.1 0.000000e+00 1704/1704 (100%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3122.0 0.000000e+00 1699/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3116.4 0.000000e+00 1698/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3116.4 0.000000e+00 1698/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3110.9 0.000000e+00 1697/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3105.3 0.000000e+00 1696/1704 (99%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3099.8 0.000000e+00 1695/1704 (99%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3099.8 0.000000e+00 1695/1704 (99%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI869679 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1693/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1693/1705 (99%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774466 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1687/1704 (99%) EPI774442 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1688/1705 (99%) EPI774352 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1687/1704 (99%) EPI774498 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI774426 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI774361 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI774344 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2977.9 0.000000e+00 1673/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2977.9 0.000000e+00 1673/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2966.8 0.000000e+00 1671/1704 (98%) EPI675774 A/duck/Liaoning/S1001/2014 (A/H5N8) segment 4 (HA) 2966.8 0.000000e+00 1671/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1669/1704 (97%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1668/1705 (97%) EPI860239 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2935.4 0.000000e+00 1602/1609 (99%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1666/1705 (97%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1666/1705 (97%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2928.1 0.000000e+00 1665/1705 (97%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1664/1705 (97%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1664/1706 (97%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1663/1705 (97%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1664/1706 (97%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1663/1705 (97%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2911.4 0.000000e+00 1662/1705 (97%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2911.4 0.000000e+00 1662/1705 (97%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1662/1705 (97%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2905.9 0.000000e+00 1662/1706 (97%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2905.9 0.000000e+00 1661/1705 (97%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2905.9 0.000000e+00 1661/1705 (97%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2900.4 0.000000e+00 1660/1705 (97%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2896.7 0.000000e+00 1658/1703 (97%) EPI749889 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 4 (HA) 2894.8 0.000000e+00 1660/1706 (97%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2889.3 0.000000e+00 1658/1705 (97%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2889.3 0.000000e+00 1658/1705 (97%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2883.7 0.000000e+00 1658/1706 (97%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2878.2 0.000000e+00 1656/1705 (97%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2872.7 0.000000e+00 1655/1705 (97%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2872.7 0.000000e+00 1656/1706 (97%) Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Align Segment-ID Name Score E-Value Identity EPI869689 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI869681 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI868850 A/turkey/England/052131/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2560.6 0.000000e+00 1399/1406 (99%) EPI864747 A/mute swan/Croatia/85/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863867 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863851 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863836 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863828 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863859 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1398/1406 (99%) EPI774500 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774468 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774452 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774444 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774436 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774420 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774412 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774404 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774388 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774380 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774371 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774363 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774346 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774337 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774320 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774312 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774304 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774270 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774261 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774253 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774244 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774195 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774187 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774144 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774136 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774115 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI858846 A/painted stork/India/10CA03/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774492 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774484 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774477 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774460 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774396 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1395/1403 (99%) EPI774354 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774328 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774296 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774279 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1395/1403 (99%) EPI774178 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774170 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774161 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774508 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774428 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774288 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774220 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774212 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1394/1403 (99%) EPI774152 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1397/1407 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774236 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1396/1407 (99%) EPI774228 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1395/1407 (99%) EPI858838 A/duck/India/10CA01/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI774203 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2503.3 0.000000e+00 1390/1407 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2470.1 0.000000e+00 1385/1408 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2459.0 0.000000e+00 1383/1408 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1379/1408 (97%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2425.8 0.000000e+00 1377/1408 (97%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2420.2 0.000000e+00 1376/1408 (97%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1375/1408 (97%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1375/1408 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1376/1409 (97%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1375/1408 (97%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1374/1408 (97%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1374/1408 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1375/1409 (97%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1372/1407 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1372/1408 (97%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1372/1408 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1372/1408 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1371/1408 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1372/1409 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2390.7 0.000000e+00 1352/1380 (97%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1370/1408 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1370/1408 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1370/1409 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1369/1408 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1369/1408 (97%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2375.9 0.000000e+00 1368/1408 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2353.8 0.000000e+00 1359/1400 (97%) EPI749888 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1353/1395 (96%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1354/1397 (96%) EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2331.6 0.000000e+00 1361/1409 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1359/1408 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Align Segment-ID Name Score E-Value Identity EPI869690 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI868851 A/turkey/England/052131/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI863852 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 7 (MP) 1788.7 0.000000e+00 977/982 (99%) EPI863837 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 7 (MP) 1788.7 0.000000e+00 977/982 (99%) EPI863829 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 7 (MP) 1788.7 0.000000e+00 977/982 (99%) EPI869682 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI863868 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1779.4 0.000000e+00 973/978 (99%) EPI826909 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774437 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774364 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774297 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774221 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774501 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774485 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774453 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774413 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774397 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774347 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774338 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774330 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774321 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774271 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774245 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774229 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774213 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774493 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774478 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774405 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774381 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774355 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774289 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774145 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774509 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774421 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774389 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774313 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774280 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774237 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774204 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774179 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774162 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774153 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774137 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI858847 A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774305 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774262 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI774254 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI774196 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774123 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774116 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI858840 A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774470 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI774429 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774372 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI774188 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774171 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774461 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 7 (MP) 1737.0 0.000000e+00 969/983 (98%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI461550 A/duck/Hunan/S11090/2012 (A/H4N6) segment 7 (MP) 1703.7 0.000000e+00 963/983 (97%) EPI704449 A/duck/Mongolia/996/2015 (A/H3N8) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI704417 A/duck/Mongolia/543/2015 (A/H4N6) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI601676 A/duck/Jiangxi/34864/2013 (A/H0) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI599826 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI548388 A/chicken/Jilin/SD001/2014 (A/H9N2) segment 7 (MP) 1689.0 0.000000e+00 960/983 (97%) EPI749996 A/environment/sichuan/322074/2015 (A/H4N6) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682981 A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682951 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682950 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682949 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI590087 A/duck/Quang Ninh/90c112/2013 (A/H3N2) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI773768 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 7 (MP) 1681.6 0.000000e+00 958/982 (97%) EPI753587 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI704294 A/duck/Mongolia/127/2015 (A/H4N6) segment 7 (MP) 1681.6 0.000000e+00 958/982 (97%) EPI704270 A/duck/Mongolia/101/2015 (A/H4N6) segment 7 (MP) 1681.6 0.000000e+00 958/982 (97%) EPI602450 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602443 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602436 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602429 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602405 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602398 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602391 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602384 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Align Segment-ID Name Score E-Value Identity EPI869684 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI863846 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI863831 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI863823 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI860233 A/wild duck/Poland/82A/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI868845 A/turkey/England/052131/2016 (A/H5N8) segment 1 (PB2) 4163.5 0.000000e+00 2271/2280 (99%) EPI863854 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 1 (PB2) 4163.5 0.000000e+00 2271/2280 (99%) EPI863862 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 1 (PB2) 4135.8 0.000000e+00 2266/2280 (99%) EPI704280 A/duck/Mongolia/118/2015 (A/H4N6) segment 1 (PB2) 3956.6 0.000000e+00 2235/2281 (97%) EPI704256 A/duck/Mongolia/30/2015 (A/H3N8) segment 1 (PB2) 3940.0 0.000000e+00 2232/2281 (97%) EPI704541 A/duck/Mongolia/742/2015 (A/H10N7) segment 1 (PB2) 3934.5 0.000000e+00 2231/2281 (97%) EPI704419 A/duck/Mongolia/655/2015 (A/H2N3) segment 1 (PB2) 3934.5 0.000000e+00 2231/2281 (97%) EPI704385 A/duck/Mongolia/482/2015 (A/H2N3) segment 1 (PB2) 3928.9 0.000000e+00 2230/2281 (97%) EPI704403 A/duck/Mongolia/521/2015 (A/H3N8) segment 1 (PB2) 3906.8 0.000000e+00 2226/2281 (97%) EPI469157 A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%) EPI773754 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2222/2281 (97%) EPI774332 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%) EPI774315 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%) EPI774198 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%) EPI836611 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI823745 A/wild duck/Tyva/35/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774495 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774455 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774447 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774439 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774349 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774323 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774274 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774215 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774207 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774190 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774127 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI858841 A/painted stork/India/10CA03/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI836603 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI823753 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774487 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774480 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774431 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774416 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774407 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774399 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774375 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774366 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774358 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774341 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774291 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774264 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774248 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774139 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI823457 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI806627 A/duck/Zhejiang/6D10/2013 (A/H2N8) segment 1 (PB2) 3856.9 0.000000e+00 2218/2282 (97%) EPI774463 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774423 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774307 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774299 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774283 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774256 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774239 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774231 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774223 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774173 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774110 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI823896 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 1 (PB2) 3851.4 0.000000e+00 2217/2282 (97%) EPI774503 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774472 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774383 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774182 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774147 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774118 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774391 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 1 (PB2) 3845.8 0.000000e+00 2215/2281 (97%) EPI774165 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 1 (PB2) 3845.8 0.000000e+00 2216/2282 (97%) EPI774156 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 1 (PB2) 3845.8 0.000000e+00 2215/2281 (97%) EPI858833 A/duck/India/10CA01/2016 (A/H5N8) segment 1 (PB2) 3829.2 0.000000e+00 2212/2281 (96%) EPI704288 A/duck/Mongolia/127/2015 (A/H4N6) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI704264 A/duck/Mongolia/101/2015 (A/H4N6) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI683169 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI683168 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI617754 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 1 (PB2) 3818.1 0.000000e+00 2211/2282 (96%) EPI704394 A/duck/Mongolia/520/2015 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2209/2281 (96%) EPI527588 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%) EPI692341 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI692333 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI527576 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI335395 A/aquatic bird/Korea/CN9/2009 (A/H6N8) segment 1 (PB2) 3796.0 0.000000e+00 2208/2283 (96%) EPI845250 A/environment/Sichuan/315068/2015 (A/H6N2) segment 1 (PB2) 3790.4 0.000000e+00 2205/2281 (96%) EPI584398 A/duck/Hunan/S3137/2009 (A/H10N8) segment 1 (PB2) 3790.4 0.000000e+00 2206/2282 (96%) EPI845251 A/environment/Sichuan/315069/2015 (A/H6N2) segment 1 (PB2) 3784.9 0.000000e+00 2204/2281 (96%) EPI399891 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 1 (PB2) 3784.9 0.000000e+00 2206/2283 (96%) EPI335411 A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 1 (PB2) 3784.9 0.000000e+00 2205/2282 (96%) EPI314734 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 1 (PB2) 3784.9 0.000000e+00 2206/2283 (96%) EPI704435 A/duck/Mongolia/777/2015 (A/H3N8) segment 1 (PB2) 3779.4 0.000000e+00 2204/2282 (96%) EPI469227 A/duck/Jiangxi/16769/2010 (A/H7N7) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%) EPI469225 A/duck/Jiangxi/16326/2010 (A/H7N7) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%) EPI469143 A/duck/Jiangxi/16285/2010 (A/H7N3) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%) EPI469228 A/duck/Jiangxi/21980/2010 (A/H7N7) segment 1 (PB2) 3768.3 0.000000e+00 2202/2282 (96%) EPI527590 A/ruddy shelduck/Mongolia/1209/2010 (A/H7N1) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI527569 A/ruddy shelduck/Mongolia/436/2010 (A/H7N1) segment 1 (PB2) 3762.7 0.000000e+00 2202/2283 (96%) EPI527561 A/common goldeneye/Mongolia/1271/2010 (A/H7N1) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI527546 A/common shelduck/Mongolia/2185/2011 (A/H3N8) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI469226 A/duck/Jiangxi/16736/2010 (A/H7N3) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96% Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Align Segment-ID Name Score E-Value Identity EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4196.7 0.000000e+00 2274/2274 (100%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4152.4 0.000000e+00 2265/2274 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4146.8 0.000000e+00 2264/2274 (99%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4132.1 0.000000e+00 2261/2274 (99%) EPI869677 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4130.2 0.000000e+00 2261/2274 (99%) EPI863832 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2260/2274 (99%) EPI863824 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2260/2274 (99%) EPI868846 A/turkey/England/052131/2016 (A/H5N8) segment 2 (PB1) 4124.7 0.000000e+00 2260/2274 (99%) EPI863847 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 2 (PB1) 4124.7 0.000000e+00 2259/2274 (99%) EPI773755 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 2 (PB1) 4124.7 0.000000e+00 2260/2274 (99%) EPI869084 A/mute swan/Croatia/70/2016 (A/H5N8) segment 2 (PB1) 4119.1 0.000000e+00 2257/2271 (99%) EPI774488 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774481 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774408 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774400 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774376 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774367 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774292 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774284 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774275 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774265 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774224 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774216 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774208 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774496 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774424 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774417 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774359 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774350 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774333 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774324 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774316 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774257 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774249 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774199 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774342 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 2 (PB1) 4097.0 0.000000e+00 2255/2274 (99%) EPI858842 A/painted stork/India/10CA03/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI836612 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774448 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774440 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774432 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2255/2275 (99%) EPI774191 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774140 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774129 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI836604 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774456 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774240 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774232 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774183 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774174 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774157 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774119 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774111 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI858834 A/duck/India/10CA01/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774473 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774464 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774392 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774384 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774300 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774166 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774148 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI782721 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 2 (PB1) 4074.8 0.000000e+00 2251/2274 (98%) EPI774308 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 2 (PB1) 4074.8 0.000000e+00 2251/2274 (98%) EPI823754 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2245/2275 (98%) EPI692342 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 2 (PB1) 3897.6 0.000000e+00 2220/2275 (97%) EPI692334 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 2 (PB1) 3892.0 0.000000e+00 2219/2275 (97%) EPI704338 A/duck/Mongolia/179/2015 (A/H3N8) segment 2 (PB1) 3869.9 0.000000e+00 2216/2276 (97%) EPI513368 A/mallard/Sweden/101900/2009 (A/H4N3) segment 2 (PB1) 3869.9 0.000000e+00 2215/2275 (97%) EPI540205 A/environment/Bangladesh/1002/2010 (A/H11N3) segment 2 (PB1) 3864.3 0.000000e+00 2214/2275 (97%) EPI823913 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%) EPI600850 A/duck/Jiangxi/22960/2008 (A/H10N8) segment 2 (PB1) 3858.8 0.000000e+00 2213/2275 (97%) EPI540189 A/duck/Bangladesh/1729/2010 (A/H11N3) segment 2 (PB1) 3858.8 0.000000e+00 2213/2275 (97%) EPI823905 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%) EPI823897 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%) EPI823785 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%) EPI599808 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 2 (PB1) 3853.2 0.000000e+00 2212/2275 (97%) EPI540181 A/duck/Bangladesh/1728/2010 (A/H11N3) segment 2 (PB1) 3853.2 0.000000e+00 2212/2275 (97%) EPI540173 A/duck/Bangladesh/1727/2010 (A/H11N3) segment 2 (PB1) 3847.7 0.000000e+00 2211/2275 (97%) EPI469416 A/duck/Yunnan/2908/2009 (A/H11N9) segment 2 (PB1) 3836.6 0.000000e+00 2207/2272 (97%) EPI372416 A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 2 (PB1) 3836.6 0.000000e+00 2209/2275 (97%) EPI704321 A/duck/Mongolia/173/2015 (A/H3N8) segment 2 (PB1) 3831.1 0.000000e+00 2209/2276 (97%) EPI540365 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 2 (PB1) 3831.1 0.000000e+00 2209/2276 (97%) EPI476095 A/greylag goose/Iceland/0953/2011 (A/H6N5) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI476083 A/greylag goose/Iceland/0948/2011 (A/H6N5) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI476028 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI372440 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI527601 A/northern shoveler/Mongolia/907V/2009 (A/H10N8) segment 2 (PB1) 3825.5 0.000000e+00 2207/2275 (97%) EPI540253 A/duck/Bangladesh/31687/2010 (A/H1N1) segment 2 (PB1) 3820.0 0.000000e+00 2205/2274 (96%) EPI540229 A/duck/Bangladesh/1687/2010 (A/H1N1) segment 2 (PB1) 3820.0 0.000000e+00 2205/2274 (96%) EPI527654 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 2 (PB1) 3820.0 0.000000e+00 2206/2275 (96%) EPI527639 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 2 (PB1) 3820.0 0.000000e+00 2206/2275 (96%) EPI527641 A/ruddy shelduck/Mongolia/894V/2009 (A/H4N3) segment 2 (PB1) 3814.5 0.000000e+00 2205/2275 (96%) EPI601832 A/duck/Jiangxi/17142/2013 (A/H0) segment 2 (PB1) 3812.6 0.000000e+00 2193/2258 (97%) EPI704412 A/duck/Mongolia/543/2015 (A/H4N6) segment 2 (PB1) 3808.9 0.000000e+00 2205/2276 (96%) EPI681228 A/goose/Zhejiang/112080/2014 (A/H5N6) segment 2 (PB1) 3808.9 0.000000e+00 2204/2275 (96%) EPI583945 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 2 (PB1) 3808.9 0.000000e+00 2205/2276 (96%) EPI704518 A/duck/Mongolia/518/2015 (A/H10N3) segment 2 (PB1) 3803.4 0.000000e+00 2203/2275 (96%) EPI704444 A/duck/Mongolia/996/2015 (A/H3N8) segment 2 (PB1) 3803.4 0.000000e+00 2204/2276 (96%) EPI527616 A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 2 (PB1) 3803.4 0.000000e+00 2203/2275 (96%) EPI704354 A/duck/Mongolia/200/2015 (A/H3N8) segment 2 (PB1) 3797.8 0.000000e+00 2202/2275 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Align Segment-ID Name Score E-Value Identity EPI869686 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 3 (PA) 3973.3 0.000000e+00 2151/2151 (100%) EPI868847 A/turkey/England/052131/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI860235 A/wild duck/Poland/82A/2016 (A/H5N8) segment 3 (PA) 3945.6 0.000000e+00 2146/2151 (99%) EPI863848 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 3 (PA) 3941.9 0.000000e+00 2145/2151 (99%) EPI863864 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 3 (PA) 3940.0 0.000000e+00 2145/2151 (99%) EPI863833 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 3 (PA) 3938.2 0.000000e+00 2144/2151 (99%) EPI863825 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 3 (PA) 3938.2 0.000000e+00 2144/2151 (99%) EPI863856 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 3 (PA) 3930.8 0.000000e+00 2142/2151 (99%) EPI614265 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 3 (PA) 3724.0 0.000000e+00 2106/2151 (97%) EPI446529 A/wild goose/Dongting/C1037/2011 (A/H12N8) segment 3 (PA) 3685.2 0.000000e+00 2100/2152 (97%) EPI596393 A/muscovy duck/Vietnam/LBM201/2012 (A/H3N2) segment 3 (PA) 3668.6 0.000000e+00 2097/2152 (97%) EPI441050 A/muscovy duck/Vietnam/LBM198/2012 (A/H6N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI418270 A/muscovy duck/Vietnam/LBM189/2012 (A/H3N2) segment 3 (PA) 3663.0 0.000000e+00 2096/2152 (97%) EPI538458 A/common teal/Mongolia/1920/2011 (A/H4N6) segment 3 (PA) 3661.2 0.000000e+00 2079/2127 (97%) EPI692479 A/duck/Hubei/S2114/2012 (A/H4N8) segment 3 (PA) 3646.4 0.000000e+00 2095/2154 (97%) EPI598436 A/duck/Jiangxi/6535/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598434 A/duck/Jiangxi/6648/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598433 A/duck/Jiangxi/6645/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598431 A/duck/Jiangxi/6624/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598430 A/duck/Jiangxi/6602/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598428 A/duck/Jiangxi/6568/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598425 A/duck/Jiangxi/6544/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598424 A/duck/Jiangxi/6526/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598423 A/duck/Jiangxi/6515/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598364 A/duck/Jiangxi/6496/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598362 A/duck/Jiangxi/6474/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598361 A/duck/Jiangxi/6460/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598358 A/duck/Jiangxi/6450/2013 (A/H10N8) segment 3 (PA) 3646.4 0.000000e+00 2093/2152 (97%) EPI598432 A/duck/Jiangxi/6634/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598429 A/duck/Jiangxi/6584/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598427 A/duck/Jiangxi/6556/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598426 A/duck/Jiangxi/6547/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598422 A/duck/Jiangxi/6505/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI598363 A/duck/Jiangxi/6487/2013 (A/H10N8) segment 3 (PA) 3640.9 0.000000e+00 2092/2152 (97%) EPI596484 A/duck/Vietnam/LBM553/2013 (A/H3N8) segment 3 (PA) 3635.3 0.000000e+00 2092/2153 (97%) EPI534727 A/duck/Zhejiang/4637/2013 (A/H3N2) segment 3 (PA) 3635.3 0.000000e+00 2071/2122 (97%) EPI336009 A/teal/Chany/444/2009 (A/H8N8) segment 3 (PA) 3635.3 0.000000e+00 2090/2151 (97%) EPI534730 A/duck/Zhejiang/4625/2013 (A/H3N2) segment 3 (PA) 3633.5 0.000000e+00 2070/2121 (97%) EPI704339 A/duck/Mongolia/179/2015 (A/H3N8) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI704322 A/duck/Mongolia/173/2015 (A/H3N8) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI577205 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI476086 A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI476085 A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI475922 A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 3 (PA) 3629.8 0.000000e+00 2090/2152 (97%) EPI476088 A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI476087 A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI476065 A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI475923 A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI475921 A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 3 (PA) 3624.2 0.000000e+00 2089/2152 (97%) EPI753580 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 3 (PA) 3618.7 0.000000e+00 2088/2152 (97%) EPI461625 A/duck/Hunan/S11893/2012 (A/H4N6) segment 3 (PA) 3618.7 0.000000e+00 2087/2151 (97%) EPI845253 A/environment/Sichuan/315068/2015 (A/H6N2) segment 3 (PA) 3613.2 0.000000e+00 2087/2152 (96%) EPI475919 A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 3 (PA) 3613.2 0.000000e+00 2087/2152 (96%) EPI845260 A/environment/Sichuan/315069/2015 (A/H6N2) segment 3 (PA) 3607.6 0.000000e+00 2086/2152 (96%) EPI841762 A/chicken/Jiangxi/C25/2014 (A/H7N7) segment 3 (PA) 3607.6 0.000000e+00 2086/2152 (96%) EPI542399 A/muscovy duck/Vietnam/LBM687/2014 (A/H4N6) segment 3 (PA) 3607.6 0.000000e+00 2086/2152 (96%) EPI222086 A/garganey/Altai/1213/2007 (A/H5N2) segment 3 (PA) 3607.6 0.000000e+00 2085/2151 (96%) EPI222046 A/gadwall/Altai/1202/2007 (A/H5N2) segment 3 (PA) 3607.6 0.000000e+00 2085/2151 (96%) EPI387543 A/white-fronted goose/Mongolia/1-125/2008 (A/H3N8) segment 3 (PA) 3602.1 0.000000e+00 2066/2124 (97%) EPI538449 A/ruddy shelduck/Mongolia/686C2/2008 (A/H2N3) segment 3 (PA) 3594.7 0.000000e+00 2066/2126 (97%) EPI534726 A/duck/Zhejiang/4613/2013 (A/H3N2) segment 3 (PA) 3592.9 0.000000e+00 2051/2103 (97%) EPI591175 A/wild bird/Jiangxi/34503/2013 (A/H7N7) segment 3 (PA) 3591.0 0.000000e+00 2083/2152 (96%) EPI591172 A/duck/Jiangxi/34894/2013 (A/H0) segment 3 (PA) 3591.0 0.000000e+00 2083/2152 (96%) EPI591173 A/wild bird/Jiangxi/34458/2013 (A/H7N7) segment 3 (PA) 3585.5 0.000000e+00 2083/2153 (96%) EPI704519 A/duck/Mongolia/518/2015 (A/H10N3) segment 3 (PA) 3574.4 0.000000e+00 2081/2153 (96%) EPI598773 A/duck/Jiangxi/6613/2013 (A/H0) segment 3 (PA) 3574.4 0.000000e+00 2081/2153 (96%) EPI614267 A/mallard/Republic of Georgia/1/2012 (A/H1N1) segment 3 (PA) 3568.8 0.000000e+00 2078/2151 (96%) EPI823780 A/environment/Kamchatka/24/2016 (A/H13N8) segment 3 (PA) 3563.3 0.000000e+00 2077/2151 (96%) EPI704371 A/duck/Mongolia/211/2015 (A/H3N8) segment 3 (PA) 3563.3 0.000000e+00 2079/2153 (96%) EPI704363 A/duck/Mongolia/208/2015 (A/H3N8) segment 3 (PA) 3563.3 0.000000e+00 2079/2153 (96%) EPI704314 A/duck/Mongolia/167/2015 (A/H3N8) segment 3 (PA) 3563.3 0.000000e+00 2079/2153 (96%) EPI693705 A/duck/Mongolia/83/2015 (A/H3N8) segment 3 (PA) 3563.3 0.000000e+00 2079/2153 (96%) EPI614279 A/mallard/Republic of Georgia/14/2011 (A/H10N7) segment 3 (PA) 3563.3 0.000000e+00 2077/2151 (96%) EPI704258 A/duck/Mongolia/30/2015 (A/H3N8) segment 3 (PA) 3557.8 0.000000e+00 2078/2153 (96%) EPI683216 A/chicken/Wuhan/WHJF/2014 (A/H5N2) segment 3 (PA) 3557.8 0.000000e+00 2077/2152 (96%) EPI511081 A/mallard/Sweden/52405/2006 (A/H0) segment 3 (PA) 3552.2 0.000000e+00 2076/2152 (96%) EPI704437 A/duck/Mongolia/777/2015 (A/H3N8) segment 3 (PA) 3546.7 0.000000e+00 2076/2153 (96%) EPI401787 A/spot-billed duck/Xianghai/427/2011 (A/H5N2) segment 3 (PA) 3546.7 0.000000e+00 2074/2151 (96%) EPI372287 A/shoveler/Egypt/00600-NAMRU3/2004 (A/H10N7) segment 3 (PA) 3546.7 0.000000e+00 2074/2151 (96%) EPI823764 A/environment/Kamchatka/23/2016 (A/H13N8) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI704543 A/duck/Mongolia/742/2015 (A/H10N7) segment 3 (PA) 3541.1 0.000000e+00 2075/2153 (96%) EPI704421 A/duck/Mongolia/655/2015 (A/H2N3) segment 3 (PA) 3541.1 0.000000e+00 2075/2153 (96%) EPI296486 A/mallard/Netherlands/28/2006 (A/H3N1) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI222163 A/mallard/Altai/1208/2007 (A/H3N6) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI222094 A/garganey/Altai/1216/2007 (A/H3N6) segment 3 (PA) 3541.1 0.000000e+00 2073/2151 (96%) EPI704388 A/duck/Mongolia/482/2015 (A/H2N3) segment 3 (PA) 3535.6 0.000000e+00 2074/2153 (96%) EPI372351 A/teal/Egypt/09888-NAMRU3/2005 (A/H4N6) segment 3 (PA) 3535.6 0.000000e+00 2072/2151 (96%) EPI613953 A/mallard/Sweden/101993/2009 (A/H2N9) segment 3 (PA) 3524.5 0.000000e+00 2070/2151 (96%) EPI598732 A/duck/Jiangxi/32180/2013 (A/H0) segment 3 (PA) 3524.5 0.000000e+00 2071/2152 (96%) EPI598348 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 3 (PA) 3524.5 0.000000e+00 2071/2152 (96%) EPI511172 A/mallard/Sweden/52299/2006 (A/H4N6) segment 3 (PA) 3524.5 0.000000e+00 2071/2152 (96%) EPI234643 A/duck/Beijing/40/04 (A/H3N8) segment 3 (PA) 3524.5 0.000000e+00 2070/2151 (96%) EPI232397 A/duck/Beijing/61/05 (A/H3N8) segment 3 (PA) 3524.5 0.000000e+00 2070/2151 (96%) EPI181966 A/mallard/Netherlands/2/2005 (A/H4N2) segment 3 (PA) 3524.5 0.000000e+00 2070/2151 (96%) EPI613943 A/mallard/Sweden/4932/2004 (A/H9N2) segment 3 (PA) 3519.0 0.000000e+00 2069/2151 (96%) EPI598766 A/duck/Jiangxi/5423/2014 (A/H0) segment 3 (PA) 3519.0 0.000000e+00 2070/2152 (96%) EPI598764 A/duck/Jiangxi/34864/2013 (A/H0) segment 3 (PA) 3519.0 0.000000e+00 2070/2152 (96%) EPI591116 A/duck/Jiangxi/5418/2014 (A/H0) segment 3 (PA) 3519.0 0.000000e+00 2070/2152 (96%) EPI372327 A/shoveler/Egypt/00134-NAMRU3/2005 (A/H1N1) segment 3 (PA) 3519.0 0.000000e+00 2069/2151 (96%) EPI296254 A/wild duck/Korea/HDR02/2005 (A/H1N1) segment 3 (PA) 3513.4 0.000000e+00 2068/2151 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Align Segment-ID Name Score E-Value Identity EPI869688 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 5 (NP) 2699.1 0.000000e+00 1463/1463 (100%) EPI860236 A/wild duck/Poland/82A/2016 (A/H5N8) segment 5 (NP) 2654.8 0.000000e+00 1454/1463 (99%) EPI868849 A/turkey/England/052131/2016 (A/H5N8) segment 5 (NP) 2649.2 0.000000e+00 1453/1463 (99%) EPI863858 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 5 (NP) 2649.2 0.000000e+00 1453/1463 (99%) EPI863850 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 5 (NP) 2649.2 0.000000e+00 1453/1463 (99%) EPI863835 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 5 (NP) 2649.2 0.000000e+00 1453/1463 (99%) EPI863827 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 5 (NP) 2649.2 0.000000e+00 1453/1463 (99%) EPI863866 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 5 (NP) 2643.7 0.000000e+00 1452/1463 (99%) EPI858837 A/duck/India/10CA01/2016 (A/H5N8) segment 5 (NP) 2527.3 0.000000e+00 1431/1463 (97%) EPI617879 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 5 (NP) 2527.3 0.000000e+00 1431/1463 (97%) EPI618049 A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 5 (NP) 2521.8 0.000000e+00 1430/1463 (97%) EPI367573 A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 5 (NP) 2510.7 0.000000e+00 1428/1463 (97%) EPI816832 A/turkey/Poland/14/2013 (A/H9N2) segment 5 (NP) 2494.1 0.000000e+00 1425/1463 (97%) EPI678072 A/chicken/Italy/13VIR5051-3/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678056 A/chicken/Italy/13VIR4774/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678048 A/chicken/Italy/13VIR4603-1/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678032 A/chicken/Italy/13VIR4541-8/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678024 A/chicken/Italy/13VIR4541-7/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678008 A/chicken/Italy/13VIR4541-33/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI678000 A/chicken/Italy/13VIR4541-32/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI677992 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI677984 A/chicken/Italy/13VIR4527-12/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI560341 A/Italy/3/2013 (A/H7N7) segment 5 (NP) 2488.6 0.000000e+00 1424/1463 (97%) EPI773766 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 5 (NP) 2486.7 0.000000e+00 1424/1463 (97%) EPI678088 A/turkey/Italy/13VIR4678-1/2013 (A/H7N7) segment 5 (NP) 2483.0 0.000000e+00 1423/1463 (97%) EPI678080 A/chicken/Italy/13VIR5091/2013 (A/H7N7) segment 5 (NP) 2483.0 0.000000e+00 1423/1463 (97%) EPI678064 A/chicken/Italy/13VIR5051-1/2013 (A/H7N7) segment 5 (NP) 2483.0 0.000000e+00 1423/1463 (97%) EPI476026 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 5 (NP) 2483.0 0.000000e+00 1423/1463 (97%) EPI182076 A/common teal/Netherlands/2/2005 (A/H6N8) segment 5 (NP) 2483.0 0.000000e+00 1423/1463 (97%) EPI464915 A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 5 (NP) 2481.2 0.000000e+00 1412/1447 (97%) EPI678040 A/chicken/Italy/13VIR4541-9/2013 (A/H7N7) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI678016 A/chicken/Italy/13VIR4541-34/2013 (A/H7N7) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI513586 A/mallard/Sweden/80415/2008 (A/H0) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476119 A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476106 A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476099 A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476069 A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476053 A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476046 A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476033 A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 5 (NP) 2477.5 0.000000e+00 1422/1463 (97%) EPI476113 A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 5 (NP) 2471.9 0.000000e+00 1421/1463 (97%) EPI476039 A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 5 (NP) 2471.9 0.000000e+00 1421/1463 (97%) EPI248513 A/wild duck/Germany/WV30/06 (A/H1N1) segment 5 (NP) 2471.9 0.000000e+00 1421/1463 (97%) EPI865159 A/mute swan/Croatia/70/2016 (A/H5N8) segment 5 (NP) 2466.4 0.000000e+00 1420/1463 (97%) EPI182084 A/black-headed gull/Netherlands/1/2005 (A/H6N8) segment 5 (NP) 2466.4 0.000000e+00 1420/1463 (97%) EPI841772 A/chicken/England/474-016250/2014 (A/H4N6) segment 5 (NP) 2460.9 0.000000e+00 1420/1464 (96%) EPI533780 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 5 (NP) 2460.9 0.000000e+00 1419/1463 (96%) EPI533774 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 5 (NP) 2460.9 0.000000e+00 1419/1463 (96%) EPI182044 A/common eider/Netherlands/1/2006 (A/H3N8) segment 5 (NP) 2460.9 0.000000e+00 1419/1463 (96%) EPI178531 A/Duck/Italy/62330/2006 (A/H10N7) segment 5 (NP) 2460.9 0.000000e+00 1419/1463 (96%) EPI869680 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 5 (NP) 2449.8 0.000000e+00 1417/1463 (96%) EPI841780 A/chicken/Wales/600-020823/2014 (A/H4N6) segment 5 (NP) 2449.8 0.000000e+00 1418/1464 (96%) EPI816848 A/turkey/Poland/09/2014 (A/H9N2) segment 5 (NP) 2449.8 0.000000e+00 1409/1451 (97%) EPI839729 A/chicken/France/150169a/2015 (A/H5N1) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI561718 A/chicken/England/2830/2015 (A/H7N7) segment 5 (NP) 2444.2 0.000000e+00 1417/1464 (96%) EPI463226 A/mallard/Sweden/100580/2009 (A/H6N2) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI463224 A/mallard/Sweden/100559/2009 (A/H6N2) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI463221 A/mallard/Sweden/100537/2009 (A/H6N2) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI178556 A/Mallard/Italy/46341-12/2006 (A/H10N7) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI63227 A/teal/Italy/3931-38/2005 (A/H5N2) segment 5 (NP) 2444.2 0.000000e+00 1416/1463 (96%) EPI484288 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 5 (NP) 2440.5 0.000000e+00 1398/1437 (97%) EPI816840 A/turkey/Poland/08/2014 (A/H9N2) segment 5 (NP) 2435.0 0.000000e+00 1399/1440 (97%) EPI463229 A/mallard/Sweden/100633/2009 (A/H6N2) segment 5 (NP) 2433.2 0.000000e+00 1414/1463 (96%) EPI173732 A/duck/Italy/69238/2007 (A/H1N1) segment 5 (NP) 2427.6 0.000000e+00 1414/1464 (96%) EPI167810 A/duck/Italy/69238/2007 (A/H1N1) segment 5 (NP) 2427.6 0.000000e+00 1414/1464 (96%) EPI229963 A/duck/France/05057b/2005 (A/H5N2) segment 5 (NP) 2423.9 0.000000e+00 1397/1440 (97%) EPI169293 A/duck/France/05057b/2005 (A/H5N2) segment 5 (NP) 2423.9 0.000000e+00 1397/1440 (97%) EPI118126 A/Chicken/Italy/9097/97 (A/H5N9) segment 5 (NP) 2422.1 0.000000e+00 1412/1463 (96%) EPI63189 A/chicken/Italy/22A/1998 (A/H5N9) segment 5 (NP) 2422.1 0.000000e+00 1412/1463 (96%) EPI439828 A/domestic green-winged teal/Hunan/2036/2007 (A/H3N6) segment 5 (NP) 2416.5 0.000000e+00 1411/1463 (96%) EPI284614 A/swan/Slovenia/53/2009 (A/H7N7) segment 5 (NP) 2411.0 0.000000e+00 1411/1464 (96%) EPI251859 A/whitefronted goose/Netherlands/2/1999 (A/H6N2) segment 5 (NP) 2411.0 0.000000e+00 1410/1463 (96%) EPI251618 A/greylag goose/Netherlands/4/1999 (A/H6N1) segment 5 (NP) 2411.0 0.000000e+00 1410/1463 (96%) EPI102231 A/duck/Taiwan/WB29/99 (A/H6N1) segment 5 (NP) 2411.0 0.000000e+00 1411/1464 (96%) EPI618666 A/mallard/Sweden/2213/2003 (A/H12N5) segment 5 (NP) 2405.5 0.000000e+00 1409/1463 (96%) EPI514048 A/mallard/Sweden/68504/2007 (A/H4N2) segment 5 (NP) 2405.5 0.000000e+00 1409/1463 (96%) EPI332954 A/Anas_platyrhynchos/Camargue/091863/09 (A/H10N7) segment 5 (NP) 2405.5 0.000000e+00 1410/1464 (96%) EPI251817 A/mallard/Sweden/86/2003 (A/H12N5) segment 5 (NP) 2405.5 0.000000e+00 1409/1463 (96%) EPI118136 A/mallard/Italy/36/2002 (A/H5N3) segment 5 (NP) 2405.5 0.000000e+00 1410/1464 (96%) EPI102229 A/chicken/Taiwan/165/99 (A/H6N1) segment 5 (NP) 2405.5 0.000000e+00 1410/1464 (96%) EPI433356 A/mallard/Czech Republic/15902-12K/2009 (A/H11N2) segment 5 (NP) 2399.9 0.000000e+00 1408/1463 (96%) EPI314216 A/wild duck/Taiwan/WB147/2001 (A/H4N6) segment 5 (NP) 2399.9 0.000000e+00 1409/1464 (96%) EPI471123 A/chicken/Iran/ZMT-101/1998 (A/H9N2) segment 5 (NP) 2394.4 0.000000e+00 1407/1463 (96%) EPI463238 A/mallard/Sweden/101288/2009 (A/H5N3) segment 5 (NP) 2394.4 0.000000e+00 1407/1463 (96%) EPI377571 A/mallard/Sweden/88/2005 (A/H0) segment 5 (NP) 2394.4 0.000000e+00 1407/1463 (96%) EPI251662 A/mallard/Netherlands/2/1999 (A/H3N5) segment 5 (NP) 2394.4 0.000000e+00 1407/1463 (96%) EPI182108 A/mallard/Netherlands/11/2007 (A/H6N5) segment 5 (NP) 2394.4 0.000000e+00 1407/1463 (96%) EPI618926 A/mallard/Sweden/52057/2006 (A/H0) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI618770 A/mallard/Sweden/52903/2006 (A/H10N9) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI618589 A/mallard/Sweden/3328/2003 (A/H12N5) segment 5 (NP) 2388.8 0.000000e+00 1407/1464 (96%) EPI618536 A/mallard/Sweden/101754/2009 (A/H0) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI618101 A/mallard/Sweden/396/2002 (A/H10N4) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI514198 A/mallard/Sweden/52462/2006 (A/H4N6) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI463241 A/mallard/Sweden/101368/2009 (A/H4N6) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI372435 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI251648 A/mallard/Netherlands/12/2001 (A/H4N2) segment 5 (NP) 2388.8 0.000000e+00 1407/1464 (96%) EPI89042 A/Pigeon/Nanchang/8-142/2000 (A/H3N6) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI69241 A/sharp-tailed sandpiper/Australia/6/2004 (A/H11N9) segment 5 (NP) 2388.8 0.000000e+00 1406/1463 (96%) EPI284342 A/Anas crecca/Spain/1460/2008 (A/H7N9) segment 5 (NP) 2385.1 0.000000e+00 1405/1463 (96%) EPI618873 A/mallard/Sweden/5824/2005 (A/H10N7) segment 5 (NP) 2383.3 0.000000e+00 1405/1463 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Align Segment-ID Name Score E-Value Identity EPI869691 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 8 (NS) 1543.1 0.000000e+00 835/835 (100%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 833/835 (99%) EPI869683 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 8 (NS) 1526.5 0.000000e+00 832/835 (99%) EPI868852 A/turkey/England/052131/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI863853 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI863838 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI863830 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1520.9 0.000000e+00 831/835 (99%) EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1519.1 0.000000e+00 829/835 (99%) EPI863861 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 8 (NS) 1517.2 0.000000e+00 830/835 (99%) EPI858839 A/duck/India/10CA01/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI774263 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI774255 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 8 (NS) 1515.4 0.000000e+00 830/835 (99%) EPI774510 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774502 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774486 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774471 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774462 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774454 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774446 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774438 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774430 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774422 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774415 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774406 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774390 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774382 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774373 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774322 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774314 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774247 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774230 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774222 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774181 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774172 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774146 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774138 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774124 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI774117 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1509.8 0.000000e+00 829/835 (99%) EPI858848 A/painted stork/India/10CA03/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774398 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774340 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774298 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774290 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774282 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774273 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774238 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774214 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774206 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774197 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774189 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774164 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774155 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 828/835 (99%) EPI774494 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI774479 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI774365 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI774331 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI774306 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 827/835 (99%) EPI774348 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 8 (NS) 1493.2 0.000000e+00 826/835 (98%) EPI774357 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 825/835 (98%) EPI749883 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 826/836 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 826/836 (98%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1476.6 0.000000e+00 824/836 (98%) EPI690804 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 824/836 (98%) EPI690796 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 824/836 (98%) EPI530993 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 823/836 (98%) EPI703682 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 822/836 (98%) EPI762162 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 8 (NS) 1460.0 0.000000e+00 821/836 (98%) EPI602042 A/duck/Ningbo/3262/2013 (A/H0) segment 8 (NS) 1460.0 0.000000e+00 821/836 (98%) EPI643151 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 821/837 (98%) EPI561505 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 820/836 (98%) EPI530994 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 820/836 (98%) EPI509710 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 820/836 (98%) EPI507677 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 821/837 (98%) EPI762154 A/duck/Eastern China/JY/2014 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 819/836 (97%) EPI703687 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 819/836 (97%) EPI703679 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 819/836 (97%) EPI681416 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 819/836 (97%) EPI681415 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 8 (NS) 1443.4 0.000000e+00 818/836 (97%) EPI681406 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 8 (NS) 1443.4 0.000000e+00 818/836 (97%) EPI646032 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 814/836 (97%) EPI681414 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 813/836 (97%) EPI681413 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 8 (NS) 1415.7 0.000000e+00 813/836 (97%) EPI461611 A/duck/Hunan/S11643/2012 (A/H4N9) segment 8 (NS) 1410.1 0.000000e+00 812/836 (97%) EPI461603 A/duck/Hunan/S11547/2012 (A/H4N9) segment 8 (NS) 1410.1 0.000000e+00 812/836 (97%) EPI837813 A/environment/Korea/W136/2006 (A/H7N7) segment 8 (NS) 1399.0 0.000000e+00 810/836 (96%) EPI470634 A/duck/Jiangxi/21714/2011 (A/H11N9) segment 8 (NS) 1399.0 0.000000e+00 810/836 (96%) EPI392653 A/wild bird/Korea/A72/10 (A/H7N7) segment 8 (NS) 1399.0 0.000000e+00 810/836 (96%) EPI299310 A/avian/Japan/8KI0068/2008 (A/H3N6) segment 8 (NS) 1399.0 0.000000e+00 810/836 (96%) EPI837815 A/environment/Korea/W148/2006 (A/H7N7) segment 8 (NS) 1393.5 0.000000e+00 809/836 (96%) EPI837814 A/environment/Korea/W143/2006 (A/H7N7) segment 8 (NS) 1393.5 0.000000e+00 809/836 (96%) EPI470663 A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 8 (NS) 1393.5 0.000000e+00 809/836 (96%) EPI387512 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 8 (NS) 1393.5 0.000000e+00 809/836 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Descriptions Align Segment-ID Name Score E-Value Identity EPI869680 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 5 (NP) 2765.6 0.000000e+00 1497/1497 (100%) EPI865159 A/mute swan/Croatia/70/2016 (A/H5N8) segment 5 (NP) 2748.9 0.000000e+00 1494/1497 (99%) EPI617879 A/mallard/Republic of Georgia/13/2011 (A/H6N2) segment 5 (NP) 2632.6 0.000000e+00 1473/1497 (98%) EPI618049 A/common Teal/Republic of Georgia/1/2011 (A/H3N8) segment 5 (NP) 2593.8 0.000000e+00 1466/1497 (97%) EPI367573 A/mallard/Czech Republic/14333-1K/2011 (A/H3N8) segment 5 (NP) 2593.8 0.000000e+00 1466/1497 (97%) EPI858837 A/duck/India/10CA01/2016 (A/H5N8) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678072 A/chicken/Italy/13VIR5051-3/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678056 A/chicken/Italy/13VIR4774/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678048 A/chicken/Italy/13VIR4603-1/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678032 A/chicken/Italy/13VIR4541-8/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678024 A/chicken/Italy/13VIR4541-7/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678008 A/chicken/Italy/13VIR4541-33/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI678000 A/chicken/Italy/13VIR4541-32/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI677992 A/chicken/Italy/13VIR4527-11/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI677984 A/chicken/Italy/13VIR4527-12/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI560341 A/Italy/3/2013 (A/H7N7) segment 5 (NP) 2571.7 0.000000e+00 1462/1497 (97%) EPI476119 A/pink-footed goose/Iceland/0987/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476106 A/greylag goose/Iceland/0976/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476099 A/greylag goose/Iceland/0961/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476069 A/greylag goose/Iceland/0926/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476053 A/greylag goose/Iceland/0921/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476046 A/greylag goose/Iceland/0911/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI476033 A/greylag goose/Iceland/1474/2011 (A/H6N8) segment 5 (NP) 2571.7 0.000000e+00 1463/1498 (97%) EPI678088 A/turkey/Italy/13VIR4678-1/2013 (A/H7N7) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%) EPI678080 A/chicken/Italy/13VIR5091/2013 (A/H7N7) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%) EPI678064 A/chicken/Italy/13VIR5051-1/2013 (A/H7N7) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%) EPI476113 A/greylag goose/Iceland/0980/2011 (A/H6N8) segment 5 (NP) 2566.1 0.000000e+00 1462/1498 (97%) EPI476039 A/greylag goose/Iceland/1482/2011 (A/H6N8) segment 5 (NP) 2566.1 0.000000e+00 1462/1498 (97%) EPI182084 A/black-headed gull/Netherlands/1/2005 (A/H6N8) segment 5 (NP) 2566.1 0.000000e+00 1461/1497 (97%) EPI678040 A/chicken/Italy/13VIR4541-9/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI678016 A/chicken/Italy/13VIR4541-34/2013 (A/H7N7) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI533780 A/Caspian seal/Russia/T1/2012 (A/H4N6) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI533774 A/Caspian seal/Russia/1884/2002 (A/H4N6) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI513586 A/mallard/Sweden/80415/2008 (A/H0) segment 5 (NP) 2560.6 0.000000e+00 1460/1497 (97%) EPI841780 A/chicken/Wales/600-020823/2014 (A/H4N6) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%) EPI841772 A/chicken/England/474-016250/2014 (A/H4N6) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%) EPI773766 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 5 (NP) 2555.0 0.000000e+00 1459/1497 (97%) EPI476026 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 5 (NP) 2555.0 0.000000e+00 1460/1498 (97%) EPI63227 A/teal/Italy/3931-38/2005 (A/H5N2) segment 5 (NP) 2555.0 0.000000e+00 1461/1499 (97%) EPI248513 A/wild duck/Germany/WV30/06 (A/H1N1) segment 5 (NP) 2553.2 0.000000e+00 1452/1487 (97%) EPI182076 A/common teal/Netherlands/2/2005 (A/H6N8) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%) EPI182044 A/common eider/Netherlands/1/2006 (A/H3N8) segment 5 (NP) 2549.5 0.000000e+00 1458/1497 (97%) EPI178531 A/Duck/Italy/62330/2006 (A/H10N7) segment 5 (NP) 2544.0 0.000000e+00 1457/1497 (97%) EPI178556 A/Mallard/Italy/46341-12/2006 (A/H10N7) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI173732 A/duck/Italy/69238/2007 (A/H1N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI167810 A/duck/Italy/69238/2007 (A/H1N1) segment 5 (NP) 2538.4 0.000000e+00 1456/1497 (97%) EPI868849 A/turkey/England/052131/2016 (A/H5N8) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI251859 A/whitefronted goose/Netherlands/2/1999 (A/H6N2) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI251618 A/greylag goose/Netherlands/4/1999 (A/H6N1) segment 5 (NP) 2532.9 0.000000e+00 1455/1497 (97%) EPI839729 A/chicken/France/150169a/2015 (A/H5N1) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI514048 A/mallard/Sweden/68504/2007 (A/H4N2) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI439828 A/domestic green-winged teal/Hunan/2036/2007 (A/H3N6) segment 5 (NP) 2527.3 0.000000e+00 1454/1497 (97%) EPI816832 A/turkey/Poland/14/2013 (A/H9N2) segment 5 (NP) 2523.6 0.000000e+00 1434/1468 (97%) EPI618536 A/mallard/Sweden/101754/2009 (A/H0) segment 5 (NP) 2521.8 0.000000e+00 1453/1497 (97%) EPI561718 A/chicken/England/2830/2015 (A/H7N7) segment 5 (NP) 2521.8 0.000000e+00 1455/1499 (97%) EPI118126 A/Chicken/Italy/9097/97 (A/H5N9) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI63189 A/chicken/Italy/22A/1998 (A/H5N9) segment 5 (NP) 2516.3 0.000000e+00 1452/1497 (96%) EPI618926 A/mallard/Sweden/52057/2006 (A/H0) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI514198 A/mallard/Sweden/52462/2006 (A/H4N6) segment 5 (NP) 2510.7 0.000000e+00 1451/1497 (96%) EPI229963 A/duck/France/05057b/2005 (A/H5N2) segment 5 (NP) 2510.7 0.000000e+00 1436/1474 (97%) EPI169293 A/duck/France/05057b/2005 (A/H5N2) segment 5 (NP) 2510.7 0.000000e+00 1436/1474 (97%) EPI618873 A/mallard/Sweden/5824/2005 (A/H10N7) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI372284 A/shoveler/Egypt/00600-NAMRU3/2004 (A/H10N7) segment 5 (NP) 2505.2 0.000000e+00 1450/1497 (96%) EPI251648 A/mallard/Netherlands/12/2001 (A/H4N2) segment 5 (NP) 2505.2 0.000000e+00 1451/1498 (96%) EPI464915 A/guinea fowl/Italy/10VIR-218-134/2010 (A/H5N2) segment 5 (NP) 2501.5 0.000000e+00 1416/1447 (97%) EPI618918 A/mallard/Sweden/51933/2006 (A/H10N9) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI618770 A/mallard/Sweden/52903/2006 (A/H10N9) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI618520 A/mallard/Sweden/7146/2004 (A/H9N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI618010 A/mallard/Republic of Georgia/4/2010 (A/H1N1) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI514024 A/mallard/Sweden/68571/2007 (A/H4N6) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI514010 A/mallard/Sweden/68551/2007 (A/H4N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI514001 A/mallard/Sweden/68940/2007 (A/H4N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI513973 A/mallard/Sweden/68761/2007 (A/H4N6) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI513966 A/mallard/Sweden/68677/2007 (A/H0) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI377603 A/mallard/Sweden/68597/2007 (A/H2N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI377595 A/mallard/Sweden/68735/2007 (A/H2N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI372435 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI284614 A/swan/Slovenia/53/2009 (A/H7N7) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI222072 A/gadwall/Altai/1326/2007 (A/H3N8) segment 5 (NP) 2499.6 0.000000e+00 1450/1498 (96%) EPI222056 A/gadwall/Altai/1324/2007 (A/H3N8) segment 5 (NP) 2499.6 0.000000e+00 1450/1498 (96%) EPI190327 A/mallard/Netherlands/29/2006 (A/H7N2) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI140249 A/migratory duck/Hong Kong/MP2437/2003 (A/H6N1) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI69241 A/sharp-tailed sandpiper/Australia/6/2004 (A/H11N9) segment 5 (NP) 2499.6 0.000000e+00 1449/1497 (96%) EPI284342 A/Anas crecca/Spain/1460/2008 (A/H7N9) segment 5 (NP) 2495.9 0.000000e+00 1448/1497 (96%) EPI618660 A/mallard/Sweden/101111/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618535 A/mallard/Sweden/50980/2006 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618493 A/mallard/Sweden/2321/2004 (A/H0) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618484 A/mallard/Sweden/100832/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618470 A/mallard/Sweden/101120/2009 (A/H2N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618460 A/mallard/Sweden/101082/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618446 A/mallard/Sweden/101163/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618431 A/mallard/Sweden/102103/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618355 A/mallard/Sweden/100760/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618348 A/mallard/Sweden/100687/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618336 A/mallard/Sweden/100740/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI618322 A/mallard/Sweden/100791/2009 (A/H11N9) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI617111 A/mallard/Sweden/80329/2008 (A/H11N5) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI514031 A/mallard/Sweden/68575/2007 (A/H4N6) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI513987 A/mallard/Sweden/68893/2007 (A/H4N6) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) EPI513980 A/mallard/Sweden/68836/2007 (A/H4N6) segment 5 (NP) 2494.1 0.000000e+00 1448/1497 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Descriptions Align Segment-ID Name Score E-Value Identity EPI869683 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 8 (NS) 1532.0 0.000000e+00 829/829 (100%) EPI868852 A/turkey/England/052131/2016 (A/H5N8) segment 8 (NS) 1504.3 0.000000e+00 824/829 (99%) EPI869691 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 817/820 (99%) EPI863869 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 817/820 (99%) EPI858839 A/duck/India/10CA01/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 823/829 (99%) EPI823760 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 823/829 (99%) EPI823752 A/wild duck/Tyva/35/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 823/829 (99%) EPI823464 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 8 (NS) 1498.8 0.000000e+00 823/829 (99%) EPI773761 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 8 (NS) 1493.2 0.000000e+00 822/829 (99%) EPI861571 A/mute swan/Croatia/70/2016 (A/H5N8) segment 8 (NS) 1491.4 0.000000e+00 816/823 (99%) EPI863853 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 815/820 (99%) EPI863838 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 815/820 (99%) EPI863830 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 815/820 (99%) EPI860238 A/wild duck/Poland/82A/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 815/820 (99%) EPI858848 A/painted stork/India/10CA03/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 821/829 (99%) EPI836618 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%) EPI836610 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%) EPI774263 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%) EPI774255 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 8 (NS) 1487.7 0.000000e+00 817/823 (99%) EPI863861 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 8 (NS) 1484.0 0.000000e+00 814/820 (99%) EPI774510 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774502 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774486 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774471 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774462 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774454 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774446 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774438 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774430 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774422 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774415 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774406 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774390 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774382 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774373 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774322 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774314 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774247 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774230 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774222 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774181 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774172 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774146 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774138 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774124 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774117 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 8 (NS) 1482.1 0.000000e+00 816/823 (99%) EPI774398 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774340 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774298 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774290 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774282 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774273 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774238 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774214 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774206 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774197 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774189 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774164 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774155 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 8 (NS) 1476.6 0.000000e+00 815/823 (99%) EPI774494 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774479 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774365 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774331 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774306 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI703688 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 8 (NS) 1471.1 0.000000e+00 814/823 (98%) EPI774357 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI774348 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 813/823 (98%) EPI690812 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 8 (NS) 1465.5 0.000000e+00 818/830 (98%) EPI749883 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 8 (NS) 1456.3 0.000000e+00 811/822 (98%) EPI690804 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 816/830 (98%) EPI690796 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 8 (NS) 1454.4 0.000000e+00 816/830 (98%) EPI530993 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 8 (NS) 1448.9 0.000000e+00 815/830 (98%) EPI764785 A/duck/Shaoxing/5240/2013 (A/H0) segment 8 (NS) 1445.2 0.000000e+00 809/822 (98%) EPI703682 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 8 (NS) 1437.8 0.000000e+00 809/824 (98%) EPI643151 A/Environment/Guangdong/GZ55/2013(H5N8) (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 813/831 (97%) EPI561505 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 812/830 (97%) EPI530994 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 812/830 (97%) EPI509710 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 8 (NS) 1432.3 0.000000e+00 812/830 (97%) EPI762162 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 8 (NS) 1428.6 0.000000e+00 806/822 (98%) EPI602042 A/duck/Ningbo/3262/2013 (A/H0) segment 8 (NS) 1428.6 0.000000e+00 806/822 (98%) EPI681416 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 805/821 (98%) EPI681415 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 8 (NS) 1426.7 0.000000e+00 805/821 (98%) EPI507677 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 8 (NS) 1423.0 0.000000e+00 806/823 (97%) EPI703687 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 8 (NS) 1421.2 0.000000e+00 806/824 (97%) EPI681406 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 8 (NS) 1421.2 0.000000e+00 804/821 (97%) EPI762154 A/duck/Eastern China/JY/2014 (A/H5N8) segment 8 (NS) 1417.5 0.000000e+00 804/822 (97%) EPI703679 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 8 (NS) 1417.5 0.000000e+00 804/822 (97%) EPI646032 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 8 (NS) 1402.7 0.000000e+00 806/829 (97%) EPI681413 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 8 (NS) 1399.0 0.000000e+00 800/821 (97%) EPI681414 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 8 (NS) 1393.5 0.000000e+00 799/821 (97%) EPI461611 A/duck/Hunan/S11643/2012 (A/H4N9) segment 8 (NS) 1382.4 0.000000e+00 799/824 (96%) EPI461603 A/duck/Hunan/S11547/2012 (A/H4N9) segment 8 (NS) 1382.4 0.000000e+00 799/824 (96%) EPI470634 A/duck/Jiangxi/21714/2011 (A/H11N9) segment 8 (NS) 1380.6 0.000000e+00 802/829 (96%) EPI392653 A/wild bird/Korea/A72/10 (A/H7N7) segment 8 (NS) 1380.6 0.000000e+00 802/829 (96%) EPI299310 A/avian/Japan/8KI0068/2008 (A/H3N6) segment 8 (NS) 1380.6 0.000000e+00 802/829 (96%) EPI470663 A/northern shoveler/Hong Kong/MPK276/2009 (A/H11N9) segment 8 (NS) 1375.0 0.000000e+00 801/829 (96%) EPI446539 A/environment/Jiangxi/28/2009 (A/H11N9) segment 8 (NS) 1375.0 0.000000e+00 801/829 (96%) EPI419972 A/mallard/California/2563V/2011 (A/H4N6) segment 8 (NS) 1375.0 0.000000e+00 801/829 (96%) EPI419965 A/mallard/California/2563P/2011 (A/H4N6) segment 8 (NS) 1375.0 0.000000e+00 801/829 (96%) EPI387512 A/ruddy shelduck/Mongolia/2-79/2007 (A/H3N8) segment 8 (NS) 1375.0 0.000000e+00 801/829 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 27, 2016 Author Report Share Posted December 27, 2016 Isolate name: A/decoy_duck/France/161104e/2016 Isolate ID: EPI_ISL_239997 Passage details/history: field sample Type: A / H5N8 Lineage: Sample information Collection date: 2016-11-26 Host Duck Additional host information: Domestic status: Is vaccinated: Location: France / Region Nord-Pas-De Calais / Departement du Pas-de-Calais Additional location information: Health status: Specimen source: Tracheal swab Strain or commercial product name used for vaccination: Institute information Originating lab: Anses (Ploufragan-Plouzané) Sample ID given by the sample provider: Address: Anses (Ploufragan-Plouzané) Rue de Beaucemaine 22440 Ploufragan France Submitting lab: French Agency for Food, Environmental and Occupational Health Sample ID given by the submitting laboratory: Authors: Address: French Agency for Food, Environmental and Occupational Health Laboratoire de Ploufragan-Plouzané rue des Fusilles 22440 Ploufragan France Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/decoy_duck/France/161104e/2016 2280 EPI869684 PB1 A/decoy_duck/France/161104e/2016 2297 EPI869685 PA A/decoy_duck/France/161104e/2016 2151 EPI869686 HA A/decoy_duck/France/161104e/2016 1704 EPI869687 NP A/decoy_duck/France/161104e/2016 1463 EPI869688 NA A/decoy_duck/France/161104e/2016 1411 EPI869689 MP A/decoy_duck/France/161104e/2016 982 EPI869690 NS A/decoy_duck/France/161104e/2016 835 EPI869691 Submitter information Submitter: Briand, Francois-Xavier Submission Date: 2016-12-26 Last modifier: Briand, Francois-Xavier Last modified: 2016-12-27 Address: French Agency for Food, Environmental and Occupational Health Laboratoire de Ploufragan-Plouzané rue des Fusilles 22440 Ploufragan France Link to comment Share on other sites More sharing options...
Admin Posted December 28, 2016 Report Share Posted December 28, 2016 Isolate name: A/duck/France/161108h/2016 Isolate ID: EPI_ISL_240012 Passage details/history: Type: A / H5N8 Lineage: Sample information Collection date: 2016-11-28 Host Duck Additional host information: Domestic status: Domestic Is vaccinated: Location: France / Midi-Pyrenees / Departement du Tarn Additional location information: Health status: Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: Sample ID given by the sample provider: Address: Submitting lab: French Agency for Food, Environmental and Occupational Health Sample ID given by the submitting laboratory: Authors: Address: French Agency for Food, Environmental and Occupational Health Laboratoire de Ploufragan-Plouzané rue des Fusilles 22440 Ploufragan France Publication Publication In vivo antiviral resistance Phenotype Genotype Unspecified Antiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional information Antigenic characterization: Note: Sequence segment identifier length accession # INSDC Sequence PB2 A/duck/France/161108h/2016 2341 EPI869806 PB1 A/duck/France/161108h/2016 2297 EPI869807 PA A/duck/France/161108h/2016 2228 EPI869808 HA A/duck/France/161108h/2016 1704 EPI869809 NP A/duck/France/161108h/2016 1565 EPI869810 NA A/duck/France/161108h/2016 1413 EPI869811 MP A/duck/France/161108h/2016 982 EPI869812 NS A/duck/France/161108h/2016 877 EPI869813 Submitter information Submitter: Briand, Francois-Xavier Submission Date: 2016-12-27 Last modifier: Briand, Francois-Xavier Last modified: 2016-12-28 Address: French Agency for Food, Environmental and Occupational Health Laboratoire de Ploufragan-Plouzané rue des Fusilles 22440 Ploufragan France Link to comment Share on other sites More sharing options...
niman Posted December 28, 2016 Author Report Share Posted December 28, 2016 Align Segment-ID Name Score E-Value Identity EPI869687 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA) 3144.1 0.000000e+00 1704/1704 (100%) EPI859650 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA) 3122.0 0.000000e+00 1699/1704 (99%) EPI868848 A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA) 3116.4 0.000000e+00 1698/1704 (99%) EPI859212 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA) 3116.4 0.000000e+00 1698/1704 (99%) EPI863865 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA) 3110.9 0.000000e+00 1697/1704 (99%) EPI860231 A/wild duck/Poland/82A/2016 (A/H5N8) segment 4 (HA) 3105.3 0.000000e+00 1696/1704 (99%) EPI864746 A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA) 3099.8 0.000000e+00 1695/1704 (99%) EPI861568 A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA) 3099.8 0.000000e+00 1695/1704 (99%) EPI863857 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI863849 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI863834 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI863826 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI861572 A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA) 3094.3 0.000000e+00 1694/1704 (99%) EPI869809 A/duck/France/161108h/2016 (A/H5N8) segment 4 (HA) 3088.7 0.000000e+00 1693/1704 (99%) EPI836614 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI836606 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI823756 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI823748 A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI823460 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1692/1704 (99%) EPI773757 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA) 3083.2 0.000000e+00 1693/1705 (99%) EPI858836 A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774394 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774386 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774310 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774242 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774234 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774121 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI774113 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA) 3072.1 0.000000e+00 1690/1704 (99%) EPI858844 A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774475 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774458 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774450 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774402 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774378 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774326 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774318 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774302 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774277 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774267 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774259 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774251 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774226 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774218 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774210 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774201 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774193 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774185 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774176 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774168 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774159 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774150 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA) 3066.6 0.000000e+00 1689/1704 (99%) EPI774506 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774490 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774483 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774434 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774410 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774369 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774335 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774294 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774286 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774142 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774133 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA) 3061.0 0.000000e+00 1688/1704 (99%) EPI774466 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1687/1704 (99%) EPI774442 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1688/1705 (99%) EPI774352 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA) 3055.5 0.000000e+00 1687/1704 (99%) EPI774498 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI774426 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI774361 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 4 (HA) 3049.9 0.000000e+00 1686/1704 (98%) EPI774344 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI703608 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 4 (HA) 3044.4 0.000000e+00 1685/1704 (98%) EPI681300 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 4 (HA) 2977.9 0.000000e+00 1673/1704 (98%) EPI681299 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 4 (HA) 2977.9 0.000000e+00 1673/1704 (98%) EPI703602 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 4 (HA) 2966.8 0.000000e+00 1671/1704 (98%) EPI675774 A/duck/Liaoning/S1001/2014 (A/H5N8) segment 4 (HA) 2966.8 0.000000e+00 1671/1704 (98%) EPI681290 A/goose/Zhejiang/925106/2014 (A/H5N6) segment 4 (HA) 2955.8 0.000000e+00 1669/1704 (97%) EPI509698 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 4 (HA) 2944.7 0.000000e+00 1668/1705 (97%) EPI860239 A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA) 2935.4 0.000000e+00 1602/1609 (99%) EPI690792 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1666/1705 (97%) EPI561495 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 4 (HA) 2933.6 0.000000e+00 1666/1705 (97%) EPI591879 A/duck/Jiangxi/23970/2013 (A/H0) segment 4 (HA) 2928.1 0.000000e+00 1665/1705 (97%) EPI703599 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 4 (HA) 2922.5 0.000000e+00 1664/1705 (97%) EPI762158 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1664/1706 (97%) EPI703607 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1663/1705 (97%) EPI690808 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1664/1706 (97%) EPI690800 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 4 (HA) 2917.0 0.000000e+00 1663/1705 (97%) EPI602037 A/duck/Ningbo/3262/2013 (A/H0) segment 4 (HA) 2911.4 0.000000e+00 1662/1705 (97%) EPI583870 A/duck/Shaoxing/5240/2013 (A/H0) segment 4 (HA) 2911.4 0.000000e+00 1662/1705 (97%) EPI530985 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 4 (HA) 2911.4 0.000000e+00 1662/1705 (97%) EPI762150 A/duck/Eastern China/JY/2014 (A/H5N8) segment 4 (HA) 2905.9 0.000000e+00 1662/1706 (97%) EPI530986 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 4 (HA) 2905.9 0.000000e+00 1661/1705 (97%) EPI507673 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 4 (HA) 2905.9 0.000000e+00 1661/1705 (97%) EPI703595 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 4 (HA) 2900.4 0.000000e+00 1660/1705 (97%) EPI681280 A/goose/Zhejiang/77166/2014 (A/H5N2) segment 4 (HA) 2896.7 0.000000e+00 1658/1703 (97%) EPI749889 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 4 (HA) 2894.8 0.000000e+00 1660/1706 (97%) EPI682915 A/duck/Wenzhou/YHQL22/2014 (A/H5N6) segment 4 (HA) 2889.3 0.000000e+00 1658/1705 (97%) EPI646105 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 4 (HA) 2889.3 0.000000e+00 1658/1705 (97%) EPI681298 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 4 (HA) 2883.7 0.000000e+00 1658/1706 (97%) EPI703593 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 4 (HA) 2878.2 0.000000e+00 1656/1705 (97%) EPI703592 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 4 (HA) 2872.7 0.000000e+00 1655/1705 (97%) EPI681297 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 4 (HA) 2872.7 0.000000e+00 1656/1706 (97%) Link to comment Share on other sites More sharing options...
niman Posted December 28, 2016 Author Report Share Posted December 28, 2016 Align Segment-ID Name Score E-Value Identity EPI869689 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 6 (NA) 2597.5 0.000000e+00 1406/1406 (100%) EPI861569 A/mute swan/Croatia/70/2016 (A/H5N8) segment 6 (NA) 2569.8 0.000000e+00 1401/1406 (99%) EPI869811 A/duck/France/161108h/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI868850 A/turkey/England/052131/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI860232 A/wild duck/Poland/82A/2016 (A/H5N8) segment 6 (NA) 2564.3 0.000000e+00 1400/1406 (99%) EPI859649 A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 6 (NA) 2560.6 0.000000e+00 1399/1406 (99%) EPI864747 A/mute swan/Croatia/85/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863867 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863851 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863836 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863828 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI861573 A/mute swan/Croatia/78/2016 (A/H5N8) segment 6 (NA) 2558.7 0.000000e+00 1399/1406 (99%) EPI863859 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 6 (NA) 2555.0 0.000000e+00 1398/1406 (99%) EPI774500 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774468 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774452 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774444 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774436 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774420 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774412 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774404 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774388 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774380 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774371 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774363 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774346 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774337 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774320 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774312 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774304 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774270 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774261 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774253 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774244 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774195 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774187 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774144 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774136 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI774115 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 6 (NA) 2553.2 0.000000e+00 1398/1406 (99%) EPI859213 A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI858846 A/painted stork/India/10CA03/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI836616 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI836608 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823758 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823750 A/wild duck/Tyva/35/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI823462 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774492 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774484 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774477 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774460 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1398/1407 (99%) EPI774396 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1395/1403 (99%) EPI774354 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774328 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774296 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774279 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1395/1403 (99%) EPI774178 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774170 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774161 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 6 (NA) 2547.7 0.000000e+00 1397/1406 (99%) EPI774508 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774428 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774288 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774220 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774212 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1394/1403 (99%) EPI774152 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1397/1407 (99%) EPI773759 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 6 (NA) 2542.1 0.000000e+00 1396/1406 (99%) EPI774236 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 6 (NA) 2536.6 0.000000e+00 1396/1407 (99%) EPI774228 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 6 (NA) 2531.0 0.000000e+00 1395/1407 (99%) EPI858838 A/duck/India/10CA01/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI774203 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 6 (NA) 2525.5 0.000000e+00 1393/1406 (99%) EPI703648 A/duck/Eastern China/S1109/2014 (A/H5N8) segment 6 (NA) 2503.3 0.000000e+00 1390/1407 (98%) EPI703642 A/duck/Eastern China/S0215/2014 (A/H5N8) segment 6 (NA) 2470.1 0.000000e+00 1385/1408 (98%) EPI681357 A/goose/Zhejiang/925037/2014 (A/H5N8) segment 6 (NA) 2459.0 0.000000e+00 1383/1408 (98%) EPI681358 A/goose/Zhejiang/925104/2014 (A/H5N8) segment 6 (NA) 2436.9 0.000000e+00 1379/1408 (97%) EPI583873 A/duck/Shaoxing/5240/2013 (A/H0) segment 6 (NA) 2425.8 0.000000e+00 1377/1408 (97%) EPI591884 A/duck/Jiangxi/23970/2013 (A/H0) segment 6 (NA) 2420.2 0.000000e+00 1376/1408 (97%) EPI690794 A/goose/Jiangsu/QD5/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1375/1408 (97%) EPI561493 A/Baikal teal/Korea/H52/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1375/1408 (97%) EPI530990 A/duck/Zhejiang/6D18/2013 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1376/1409 (97%) EPI509700 A/breeder duck/Korea/Gochang1/2014 (A/H5N8) segment 6 (NA) 2414.7 0.000000e+00 1375/1408 (97%) EPI762160 A/goose/Eastern China/CZ/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1374/1408 (97%) EPI703638 A/duck/Eastern China/S1210/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1374/1408 (97%) EPI530989 A/duck/Zhejiang/W24/2013 (A/H5N8) segment 6 (NA) 2409.2 0.000000e+00 1375/1409 (97%) EPI681355 A/duck/Zhejiang/925019/2014 (A/H5N8) segment 6 (NA) 2403.6 0.000000e+00 1372/1407 (97%) EPI703635 A/duck/Eastern China/L1021/2012 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1372/1408 (97%) EPI690802 A/goose/Shandong/WFSG1/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1372/1408 (97%) EPI681356 A/duck/Zhejiang/925169/2014 (A/H5N8) segment 6 (NA) 2398.1 0.000000e+00 1372/1408 (97%) EPI646030 A/goose/Jiangsu/WX202/2014 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1371/1408 (97%) EPI507675 A/mallard duck/Shanghai/SH-9/2013 (A/H5N8) segment 6 (NA) 2392.5 0.000000e+00 1372/1409 (97%) EPI602039 A/duck/Ningbo/3262/2013 (A/H0) segment 6 (NA) 2390.7 0.000000e+00 1352/1380 (97%) EPI762152 A/duck/Eastern China/JY/2014 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1370/1408 (97%) EPI703634 A/duck/Eastern China/L0722/2012 (A/H5N8) segment 6 (NA) 2387.0 0.000000e+00 1370/1408 (97%) EPI703633 A/duck/Eastern China/L0611/2011 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1370/1409 (97%) EPI703631 A/duck/Eastern China/L0405/2010 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1369/1408 (97%) EPI690810 A/goose/Yangzhou/0420/2014 (A/H5N8) segment 6 (NA) 2381.5 0.000000e+00 1369/1408 (97%) EPI703647 A/goose/Eastern China/S0408/2014 (A/H5N8) segment 6 (NA) 2375.9 0.000000e+00 1368/1408 (97%) EPI703632 A/duck/Eastern China/L0423/2011 (A/H5N8) segment 6 (NA) 2353.8 0.000000e+00 1359/1400 (97%) EPI749888 A/Environment/Jiangsu/98335/2014 (A/H5N8) segment 6 (NA) 2342.7 0.000000e+00 1353/1395 (96%) EPI442019 A/duck/Jiangsu/k1203/2010 (A/H5N8) segment 6 (NA) 2337.1 0.000000e+00 1354/1397 (96%) EPI544894 A/duck/Shandong/Q1/2013 (A/H5N8) segment 6 (NA) 2331.6 0.000000e+00 1361/1409 (96%) EPI561600 A/broiler duck/Korea/H133/2014 (A/H5N8) segment 6 (NA) 2326.1 0.000000e+00 1359/1408 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 28, 2016 Author Report Share Posted December 28, 2016 Align Segment-ID Name Score E-Value Identity EPI869690 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 7 (MP) 1814.5 0.000000e+00 982/982 (100%) EPI868851 A/turkey/England/052131/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI860237 A/wild duck/Poland/82A/2016 (A/H5N8) segment 7 (MP) 1797.9 0.000000e+00 979/982 (99%) EPI863860 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 7 (MP) 1792.4 0.000000e+00 978/982 (99%) EPI863852 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 7 (MP) 1788.7 0.000000e+00 977/982 (99%) EPI863837 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 7 (MP) 1788.7 0.000000e+00 977/982 (99%) EPI863829 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 7 (MP) 1788.7 0.000000e+00 977/982 (99%) EPI869812 A/duck/France/161108h/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI863868 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 7 (MP) 1786.8 0.000000e+00 977/982 (99%) EPI773760 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 7 (MP) 1781.3 0.000000e+00 976/982 (99%) EPI861570 A/mute swan/Croatia/70/2016 (A/H5N8) segment 7 (MP) 1779.4 0.000000e+00 973/978 (99%) EPI826909 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI823751 A/wild duck/Tyva/35/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI823463 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774437 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774364 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774297 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI774221 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 7 (MP) 1770.2 0.000000e+00 974/982 (99%) EPI836617 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI823759 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774501 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774485 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774453 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774413 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774397 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774347 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774338 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774330 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774321 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774271 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774245 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774229 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI774213 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 7 (MP) 1764.7 0.000000e+00 973/982 (99%) EPI836609 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774493 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774478 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774405 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774381 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774355 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774289 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774145 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 7 (MP) 1759.1 0.000000e+00 972/982 (98%) EPI774509 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774421 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774389 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774313 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774280 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774237 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774204 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774179 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774162 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774153 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 971/982 (98%) EPI774137 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 7 (MP) 1753.6 0.000000e+00 972/983 (98%) EPI858847 A/painted stork/India/10CA03/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774305 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774262 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI774254 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 971/983 (98%) EPI774196 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774123 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI774116 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 7 (MP) 1748.1 0.000000e+00 970/982 (98%) EPI858840 A/duck/India/10CA01/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774470 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI774429 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774372 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 970/983 (98%) EPI774188 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774171 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 7 (MP) 1742.5 0.000000e+00 969/982 (98%) EPI774461 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 7 (MP) 1737.0 0.000000e+00 969/983 (98%) EPI704539 A/duck/Mongolia/709/2015 (A/H10N7) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704531 A/duck/Mongolia/626/2015 (A/H10N7) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704515 A/duck/Mongolia/499/2015 (A/H10N7) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704343 A/duck/Mongolia/179/2015 (A/H3N8) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI704335 A/duck/Mongolia/173/2015 (A/H3N8) segment 7 (MP) 1720.4 0.000000e+00 965/982 (98%) EPI692379 A/duck/Chongqing/S2086/2012 (A/H4N8) segment 7 (MP) 1714.8 0.000000e+00 964/982 (98%) EPI682954 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI682953 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI590050 A/duck/Vietnam/LBM798/2014 (A/H3N6) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI467812 A/European teal/Chany/63/2011 (A/H3N8) segment 7 (MP) 1709.3 0.000000e+00 963/982 (98%) EPI461550 A/duck/Hunan/S11090/2012 (A/H4N6) segment 7 (MP) 1703.7 0.000000e+00 963/983 (97%) EPI704449 A/duck/Mongolia/996/2015 (A/H3N8) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI704417 A/duck/Mongolia/543/2015 (A/H4N6) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI601676 A/duck/Jiangxi/34864/2013 (A/H0) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI599826 A/duck/Jiangxi/32213/2013 (A/H7N6) segment 7 (MP) 1692.7 0.000000e+00 961/983 (97%) EPI548388 A/chicken/Jilin/SD001/2014 (A/H9N2) segment 7 (MP) 1689.0 0.000000e+00 960/983 (97%) EPI749996 A/environment/sichuan/322074/2015 (A/H4N6) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682981 A/duck/Wuhan/WHYF05/2014 (A/H9N2) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682951 A/wild bird/Wuhan/CDHN173/2015 (A/H11N9) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682950 A/wild bird/Wuhan/CDHN22/2015 (A/H11N9) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI682949 A/wild bird/Wuhan/CDHN01/2015 (A/H11N9) segment 7 (MP) 1687.1 0.000000e+00 960/983 (97%) EPI590087 A/duck/Quang Ninh/90c112/2013 (A/H3N2) segment 7 (MP) 1687.1 0.000000e+00 959/982 (97%) EPI773768 A/chicken/Netherlands/16007311-037041/2016 (A/H7N9) segment 7 (MP) 1681.6 0.000000e+00 958/982 (97%) EPI753587 A/duck/Hokkaido/W9/2015 (A/H1N1) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI704294 A/duck/Mongolia/127/2015 (A/H4N6) segment 7 (MP) 1681.6 0.000000e+00 958/982 (97%) EPI704270 A/duck/Mongolia/101/2015 (A/H4N6) segment 7 (MP) 1681.6 0.000000e+00 958/982 (97%) EPI602450 A/duck/Jiangxi/33665/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602443 A/duck/Jiangxi/33663/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602436 A/duck/Jiangxi/33651/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602429 A/duck/Jiangxi/33637/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602405 A/duck/Jiangxi/33759/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602398 A/duck/Jiangxi/33757/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602391 A/duck/Jiangxi/33753/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) EPI602384 A/duck/Jiangxi/33713/2013 (A/H10N3) segment 7 (MP) 1681.6 0.000000e+00 959/983 (97%) Link to comment Share on other sites More sharing options...
niman Posted December 28, 2016 Author Report Share Posted December 28, 2016 Align Segment-ID Name Score E-Value Identity EPI869684 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 1 (PB2) 4211.5 0.000000e+00 2280/2280 (100%) EPI863846 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI863831 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI863823 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI860233 A/wild duck/Poland/82A/2016 (A/H5N8) segment 1 (PB2) 4167.2 0.000000e+00 2272/2280 (99%) EPI868845 A/turkey/England/052131/2016 (A/H5N8) segment 1 (PB2) 4163.5 0.000000e+00 2271/2280 (99%) EPI863854 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 1 (PB2) 4163.5 0.000000e+00 2271/2280 (99%) EPI863862 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 1 (PB2) 4135.8 0.000000e+00 2266/2280 (99%) EPI704280 A/duck/Mongolia/118/2015 (A/H4N6) segment 1 (PB2) 3956.6 0.000000e+00 2235/2281 (97%) EPI704256 A/duck/Mongolia/30/2015 (A/H3N8) segment 1 (PB2) 3940.0 0.000000e+00 2232/2281 (97%) EPI704541 A/duck/Mongolia/742/2015 (A/H10N7) segment 1 (PB2) 3934.5 0.000000e+00 2231/2281 (97%) EPI704419 A/duck/Mongolia/655/2015 (A/H2N3) segment 1 (PB2) 3934.5 0.000000e+00 2231/2281 (97%) EPI704385 A/duck/Mongolia/482/2015 (A/H2N3) segment 1 (PB2) 3928.9 0.000000e+00 2230/2281 (97%) EPI704403 A/duck/Mongolia/521/2015 (A/H3N8) segment 1 (PB2) 3906.8 0.000000e+00 2226/2281 (97%) EPI469157 A/wild waterfowl/Hong Kong/MPP1311/2013 (A/H2N9) segment 1 (PB2) 3890.2 0.000000e+00 2223/2281 (97%) EPI773754 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 1 (PB2) 3884.6 0.000000e+00 2222/2281 (97%) EPI774332 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 1 (PB2) 3879.1 0.000000e+00 2221/2281 (97%) EPI774315 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%) EPI774198 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 1 (PB2) 3873.5 0.000000e+00 2220/2281 (97%) EPI836611 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI823745 A/wild duck/Tyva/35/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774495 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774455 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774447 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774439 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774349 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774323 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774274 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774215 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774207 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774190 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI774127 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 1 (PB2) 3868.0 0.000000e+00 2219/2281 (97%) EPI858841 A/painted stork/India/10CA03/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI836603 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI823753 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774487 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774480 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774431 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774416 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774407 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774399 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774375 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774366 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774358 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774341 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774291 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774264 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774248 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI774139 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 1 (PB2) 3862.5 0.000000e+00 2218/2281 (97%) EPI823457 A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI806627 A/duck/Zhejiang/6D10/2013 (A/H2N8) segment 1 (PB2) 3856.9 0.000000e+00 2218/2282 (97%) EPI774463 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774423 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774307 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774299 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774283 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774256 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774239 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774231 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774223 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774173 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI774110 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 1 (PB2) 3856.9 0.000000e+00 2217/2281 (97%) EPI823896 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 1 (PB2) 3851.4 0.000000e+00 2217/2282 (97%) EPI774503 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774472 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774383 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774182 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774147 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774118 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 1 (PB2) 3851.4 0.000000e+00 2216/2281 (97%) EPI774391 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 1 (PB2) 3845.8 0.000000e+00 2215/2281 (97%) EPI774165 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 1 (PB2) 3845.8 0.000000e+00 2216/2282 (97%) EPI774156 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 1 (PB2) 3845.8 0.000000e+00 2215/2281 (97%) EPI858833 A/duck/India/10CA01/2016 (A/H5N8) segment 1 (PB2) 3829.2 0.000000e+00 2212/2281 (96%) EPI704288 A/duck/Mongolia/127/2015 (A/H4N6) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI704264 A/duck/Mongolia/101/2015 (A/H4N6) segment 1 (PB2) 3829.2 0.000000e+00 2213/2282 (96%) EPI683169 A/wild bird/Wuhan/CDHN15/2015 (A/H6N2) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI683168 A/wild bird/Wuhan/CDHN09/2015 (A/H6N2) segment 1 (PB2) 3818.1 0.000000e+00 2210/2281 (96%) EPI617754 A/mallard/Republic of Georgia/2/2012 (A/H2N3) segment 1 (PB2) 3818.1 0.000000e+00 2211/2282 (96%) EPI704394 A/duck/Mongolia/520/2015 (A/H1N1) segment 1 (PB2) 3812.6 0.000000e+00 2209/2281 (96%) EPI527588 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 1 (PB2) 3801.5 0.000000e+00 2208/2282 (96%) EPI692341 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI692333 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI527576 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 1 (PB2) 3796.0 0.000000e+00 2207/2282 (96%) EPI335395 A/aquatic bird/Korea/CN9/2009 (A/H6N8) segment 1 (PB2) 3796.0 0.000000e+00 2208/2283 (96%) EPI845250 A/environment/Sichuan/315068/2015 (A/H6N2) segment 1 (PB2) 3790.4 0.000000e+00 2205/2281 (96%) EPI584398 A/duck/Hunan/S3137/2009 (A/H10N8) segment 1 (PB2) 3790.4 0.000000e+00 2206/2282 (96%) EPI845251 A/environment/Sichuan/315069/2015 (A/H6N2) segment 1 (PB2) 3784.9 0.000000e+00 2204/2281 (96%) EPI399891 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 1 (PB2) 3784.9 0.000000e+00 2206/2283 (96%) EPI335411 A/aquatic bird/Korea/CN17/2009 (A/H6N2) segment 1 (PB2) 3784.9 0.000000e+00 2205/2282 (96%) EPI314734 A/aquatic bird/Korea/CN5/2009 (A/H6N5) segment 1 (PB2) 3784.9 0.000000e+00 2206/2283 (96%) EPI704435 A/duck/Mongolia/777/2015 (A/H3N8) segment 1 (PB2) 3779.4 0.000000e+00 2204/2282 (96%) EPI469227 A/duck/Jiangxi/16769/2010 (A/H7N7) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%) EPI469225 A/duck/Jiangxi/16326/2010 (A/H7N7) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%) EPI469143 A/duck/Jiangxi/16285/2010 (A/H7N3) segment 1 (PB2) 3773.8 0.000000e+00 2203/2282 (96%) EPI469228 A/duck/Jiangxi/21980/2010 (A/H7N7) segment 1 (PB2) 3768.3 0.000000e+00 2202/2282 (96%) EPI527590 A/ruddy shelduck/Mongolia/1209/2010 (A/H7N1) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI527569 A/ruddy shelduck/Mongolia/436/2010 (A/H7N1) segment 1 (PB2) 3762.7 0.000000e+00 2202/2283 (96%) EPI527561 A/common goldeneye/Mongolia/1271/2010 (A/H7N1) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI527546 A/common shelduck/Mongolia/2185/2011 (A/H3N8) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) EPI469226 A/duck/Jiangxi/16736/2010 (A/H7N3) segment 1 (PB2) 3762.7 0.000000e+00 2201/2282 (96%) Link to comment Share on other sites More sharing options...
niman Posted December 28, 2016 Author Report Share Posted December 28, 2016 Align Segment-ID Name Score E-Value Identity EPI869685 A/decoy_duck/France/161104e/2016 (A/H5N8) segment 2 (PB1) 4196.7 0.000000e+00 2274/2274 (100%) EPI860234 A/wild duck/Poland/82A/2016 (A/H5N8) segment 2 (PB1) 4152.4 0.000000e+00 2265/2274 (99%) EPI863863 A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 2 (PB1) 4146.8 0.000000e+00 2264/2274 (99%) EPI863855 A/Chicken/Sweden/SVA161122KU0453/SZ0209321/2016 (A/H5N8) segment 2 (PB1) 4132.1 0.000000e+00 2261/2274 (99%) EPI869807 A/duck/France/161108h/2016 (A/H5N8) segment 2 (PB1) 4130.2 0.000000e+00 2261/2274 (99%) EPI863832 A/Chicken/Sweden/SVA161122KU0453/SZ0209317/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2260/2274 (99%) EPI863824 A/Chicken/Sweden/SVA161122KU0453/SZ0209316/2016 (A/H5N8) segment 2 (PB1) 4128.4 0.000000e+00 2260/2274 (99%) EPI868846 A/turkey/England/052131/2016 (A/H5N8) segment 2 (PB1) 4124.7 0.000000e+00 2260/2274 (99%) EPI863847 A/Chicken/Sweden/SVA161122KU0453/SZ0209318/2016 (A/H5N8) segment 2 (PB1) 4124.7 0.000000e+00 2259/2274 (99%) EPI773755 A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 2 (PB1) 4124.7 0.000000e+00 2260/2274 (99%) EPI869084 A/mute swan/Croatia/70/2016 (A/H5N8) segment 2 (PB1) 4119.1 0.000000e+00 2257/2271 (99%) EPI774488 A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774481 A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774408 A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774400 A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774376 A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774367 A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774292 A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774284 A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774275 A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774265 A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774224 A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774216 A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774208 A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 2 (PB1) 4108.1 0.000000e+00 2257/2274 (99%) EPI774496 A/Brown-headed Gull/Qinghai/ZTO6-MU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774424 A/Brown-headed Gull/Qinghai/ZTO1-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774417 A/Bar-headed Goose/Qinghai/BTY18-MU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774359 A/Bar-headed Goose/Qinghai/BTY15-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774350 A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774333 A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774324 A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774316 A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774257 A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774249 A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774199 A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 2 (PB1) 4102.5 0.000000e+00 2256/2274 (99%) EPI774342 A/Bar-headed Goose/Qinghai/BTY14-LU/2016 (A/H5N8) segment 2 (PB1) 4097.0 0.000000e+00 2255/2274 (99%) EPI858842 A/painted stork/India/10CA03/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI836612 A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774448 A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774440 A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774432 A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2255/2275 (99%) EPI774191 A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774140 A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI774129 A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 2 (PB1) 4091.4 0.000000e+00 2254/2274 (99%) EPI836604 A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774456 A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774240 A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774232 A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774183 A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774174 A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774157 A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774119 A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI774111 A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 2 (PB1) 4085.9 0.000000e+00 2253/2274 (99%) EPI858834 A/duck/India/10CA01/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774473 A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774464 A/Brown-headed Gull/Qinghai/ZTO5-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774392 A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774384 A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774300 A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774166 A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI774148 A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 2 (PB1) 4080.4 0.000000e+00 2252/2274 (99%) EPI782721 A/Great Black-headed Gull/Qinghai/YO1-B/2016 (A/H5N8) segment 2 (PB1) 4074.8 0.000000e+00 2251/2274 (98%) EPI774308 A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 2 (PB1) 4074.8 0.000000e+00 2251/2274 (98%) EPI823754 A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 2 (PB1) 4045.3 0.000000e+00 2245/2275 (98%) EPI692342 A/chicken/Hunan/S1267/2010 (A/H4N6) segment 2 (PB1) 3897.6 0.000000e+00 2220/2275 (97%) EPI692334 A/chicken/Hunan/S1248/2010 (A/H4N6) segment 2 (PB1) 3892.0 0.000000e+00 2219/2275 (97%) EPI704338 A/duck/Mongolia/179/2015 (A/H3N8) segment 2 (PB1) 3869.9 0.000000e+00 2216/2276 (97%) EPI513368 A/mallard/Sweden/101900/2009 (A/H4N3) segment 2 (PB1) 3869.9 0.000000e+00 2215/2275 (97%) EPI540205 A/environment/Bangladesh/1002/2010 (A/H11N3) segment 2 (PB1) 3864.3 0.000000e+00 2214/2275 (97%) EPI823913 A/teal/Chany Lake/106_ cloaca/2012 (A/H4N6) segment 2 (PB1) 3858.8 0.000000e+00 2214/2276 (97%) EPI600850 A/duck/Jiangxi/22960/2008 (A/H10N8) segment 2 (PB1) 3858.8 0.000000e+00 2213/2275 (97%) EPI540189 A/duck/Bangladesh/1729/2010 (A/H11N3) segment 2 (PB1) 3858.8 0.000000e+00 2213/2275 (97%) EPI823905 A/teal/Chany Lake/104_ feather/2012 (A/H4N6) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%) EPI823897 A/teal/Chany Lake/104_cloaca/2012 (A/H4N6) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%) EPI823785 A/shoveller/Chany Lake/101/2012 (A/H4N6) segment 2 (PB1) 3853.2 0.000000e+00 2213/2276 (97%) EPI599808 A/duck/Jiangxi/15867/2013 (A/H10N3) segment 2 (PB1) 3853.2 0.000000e+00 2212/2275 (97%) EPI540181 A/duck/Bangladesh/1728/2010 (A/H11N3) segment 2 (PB1) 3853.2 0.000000e+00 2212/2275 (97%) EPI540173 A/duck/Bangladesh/1727/2010 (A/H11N3) segment 2 (PB1) 3847.7 0.000000e+00 2211/2275 (97%) EPI469416 A/duck/Yunnan/2908/2009 (A/H11N9) segment 2 (PB1) 3836.6 0.000000e+00 2207/2272 (97%) EPI372416 A/shoveler/Egypt/00241-NAMRU3/2007 (A/H7N3) segment 2 (PB1) 3836.6 0.000000e+00 2209/2275 (97%) EPI704321 A/duck/Mongolia/173/2015 (A/H3N8) segment 2 (PB1) 3831.1 0.000000e+00 2209/2276 (97%) EPI540365 A/duck/Bangladesh/1521/2009 (A/H4N6) segment 2 (PB1) 3831.1 0.000000e+00 2209/2276 (97%) EPI476095 A/greylag goose/Iceland/0953/2011 (A/H6N5) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI476083 A/greylag goose/Iceland/0948/2011 (A/H6N5) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI476028 A/greylag goose/Iceland/1459/2011 (A/H6N5) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI372440 A/shoveler/Egypt/00006-NAMRU3/2007 (A/H10N1) segment 2 (PB1) 3831.1 0.000000e+00 2208/2275 (97%) EPI527601 A/northern shoveler/Mongolia/907V/2009 (A/H10N8) segment 2 (PB1) 3825.5 0.000000e+00 2207/2275 (97%) EPI540253 A/duck/Bangladesh/31687/2010 (A/H1N1) segment 2 (PB1) 3820.0 0.000000e+00 2205/2274 (96%) EPI540229 A/duck/Bangladesh/1687/2010 (A/H1N1) segment 2 (PB1) 3820.0 0.000000e+00 2205/2274 (96%) EPI527654 A/velvet scoter/Mongolia/879V/2009 (A/H10N8) segment 2 (PB1) 3820.0 0.000000e+00 2206/2275 (96%) EPI527639 A/surf scooter/Mongolia/878V/2009 (A/H10N8) segment 2 (PB1) 3820.0 0.000000e+00 2206/2275 (96%) EPI527641 A/ruddy shelduck/Mongolia/894V/2009 (A/H4N3) segment 2 (PB1) 3814.5 0.000000e+00 2205/2275 (96%) EPI601832 A/duck/Jiangxi/17142/2013 (A/H0) segment 2 (PB1) 3812.6 0.000000e+00 2193/2258 (97%) EPI704412 A/duck/Mongolia/543/2015 (A/H4N6) segment 2 (PB1) 3808.9 0.000000e+00 2205/2276 (96%) EPI681228 A/goose/Zhejiang/112080/2014 (A/H5N6) segment 2 (PB1) 3808.9 0.000000e+00 2204/2275 (96%) EPI583945 A/chicken/Jiangxi/10784/2014 (A/H7N7) segment 2 (PB1) 3808.9 0.000000e+00 2205/2276 (96%) EPI704518 A/duck/Mongolia/518/2015 (A/H10N3) segment 2 (PB1) 3803.4 0.000000e+00 2203/2275 (96%) EPI704444 A/duck/Mongolia/996/2015 (A/H3N8) segment 2 (PB1) 3803.4 0.000000e+00 2204/2276 (96%) EPI527616 A/ruddy shelduck/Mongolia/921C2/2009 (A/H7N1) segment 2 (PB1) 3803.4 0.000000e+00 2203/2275 (96%) EPI704354 A/duck/Mongolia/200/2015 (A/H3N8) segment 2 (PB1) 3797.8 0.000000e+00 2202/2275 (96%) Link to comment Share on other sites More sharing options...
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