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Zika Sequences From November 2015 Outbreak In Sincelejo Colombia

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LOCUS       KU646828                2601 bp    RNA     linear   VRL 02-FEB-2016
DEFINITION  Zika virus isolate Si322 polyprotein gene, partial cds.
ACCESSION   KU646828
VERSION     KU646828.1  GI:984923539
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus; Spondweni virus group.
REFERENCE   1  (bases 1 to 2601)
  AUTHORS   Camacho,E., Paternina-Gomez,M., Blanco,P.J., Osorio,J.E. and
            Aliota,M.T.
  TITLE     Detection of Autochthonous Zika Virus Transmission in Sincelejo,
            Colombia
  JOURNAL   Emerging Infect. Dis. 22 (2016) In press
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2601)
  AUTHORS   Camacho,E., Paternina-Gomez,M., Blanco,P.J., Osorio,J.E. and
            Aliota,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2016) Pathobiological Sciences, University of
            Wisconsin, 1656 Linden Dr, Madison, WI, USA
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Si322"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Colombia"
                     /collection_date="10-Nov-2015"
                     /note="genotype: Asian"
     CDS             <1..>2601
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AMC37201.1"
                     /db_xref="GI:984923540"
                     /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA
                     GSTDHMDHFSL"
     mat_peptide     <1..1515
                     /product="envelope"
     mat_peptide     1516..>2601
                     /product="NS1"
ORIGIN      
        1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg
       61 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact
      121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc
      181 tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc
      241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc
      301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca
      361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg
      421 ttgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact
      481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg
      541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat
      601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac
      661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa
      721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt
      781 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca
      841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg
      901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa
      961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag
     1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc
     1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca
     1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg
     1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga
     1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca
     1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg
     1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag
     1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca
     1501 gccgtctctg ctgatgtggg gtgctcggtg gacttctcaa agaaggagac gagatgtggt
     1561 acaggggtgt tcgtctataa cgacgttgaa gcctggaggg acaggtacaa gtaccatcct
     1621 gactcccccc gtagattggc agcagcagtc aagcaagcct gggaagatgg tatctgcggg
     1681 atctcctctg tttcaagaat ggaaaacatc atgtggagat cagtagaagg ggagctcaac
     1741 gcaatcctgg aagagaatgg agttcaactg acggtcgttg tgggatctgt aaaaaacccc
     1801 atgtggagag gtccacagag attgcccgtg cctgtgaacg agctgcccca cggctggaag
     1861 gcttggggga aatcgtactt cgtcagagca gcaaagacaa ataacagctt tgtcgtggac
     1921 ggtgacacac tgaaggaatg cccactcaaa catagagcat ggaacagctt tcttgtggag
     1981 gatcatgggt tcggggtatt tcacactagt gtctggctca aggttagaga agattattca
     2041 ttagagtgtg atccagccgt tattggaaca gctgttaagg gaaaggaggc tgtacacagt
     2101 gatctaggct actggattga gagtgagaag aatgacacat ggaggctgaa gagggcccat
     2161 ctgatcgaga tgaaaacatg tgaatggcca aagtcccaca cattgtggac agatggaata
     2221 gaagagagtg atctgatcat acccaagtct ttagctgggc cactcagcca tcacaatacc
     2281 agagagggct acaggaccca aatgaaaggg ccatggcaca gtgaagagct tgaaattcgg
     2341 tttgaggaat gcccaggcac taaggtccac gtggaggaaa catgtggaac aagaggacca
     2401 tctctgagat caaccactgc aagcggaagg gtgatcgagg aatggtgctg cagggagtgc
     2461 acaatgcccc cactgtcgtt ctgggctaaa gatggctgtt ggtatggaat ggagataagg
     2521 cccaggaaag aaccagaaag caacttagta aggtcaatgg tgactgcagg atcaactgat
     2581 cacatggatc acttctccct t

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
46594659100%0.099%KU321639.1
46554655100%0.099%KU365778.1
46554655100%0.099%KJ776791.1
46504650100%0.099%KU365780.1
46504650100%0.099%KU365779.1
46504650100%0.099%KU365777.1
46324632100%0.099%KU312312.1
45474547100%0.099%KF993678.1
45164516100%0.099%EU545988.1
45154515100%0.099%JN860885.1
41294129100%0.095%HQ234499.1
3420342073%0.099%KU312315.1
3420342073%0.099%KU312314.1
34113411100%0.089%KF268950.1
34113411100%0.089%KF268948.1
3407340773%0.099%KU312313.1

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LOCUS       KU646827                2601 bp ss-RNA     linear   VRL 02-FEB-2016
DEFINITION  Zika virus isolate Si323 polyprotein gene, partial cds.
ACCESSION   KU646827
VERSION     KU646827.1  GI:984923537
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus; Spondweni virus group.
REFERENCE   1  (bases 1 to 2601)
  AUTHORS   Camacho,E., Paternina-Gomez,M., Blanco,P.J., Osorio,J.E. and
            Aliota,M.T.
  TITLE     Detection of Autochthonous Zika Virus Transmission in Sincelejo,
            Colombia
  JOURNAL   Emerging Infect. Dis. 22 (2016) In press
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 2601)
  AUTHORS   Camacho,E., Paternina-Gomez,M., Blanco,P.J., Osorio,J.E. and
            Aliota,M.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2016) Pathobiological Sciences, University of
            Wisconsin, 1656 Linden Dr, Madison, WI, USA
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Si323"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Colombia"
                     /collection_date="10-Nov-2015"
                     /note="genotype: Asian"
     CDS             <1..>2601
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AMC37200.1"
                     /db_xref="GI:984923538"
                     /translation="IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE
                     LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG
                     NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET
                     DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF
                     HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE
                     MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG
                     TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG
                     EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG
                     AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC
                     SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR
                     MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK
                     SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE
                     CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI
                     EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR
                     GPSLRSTTASGRVIEEWCCRECTMPPLSFWAKDGCWYGMEIRPRKEPESNLVRSMVTA
                     GSTDHMDHFSL"
     mat_peptide     <1..1515
                     /product="envelope"
     mat_peptide     1516..>2601
                     /product="NS1"
ORIGIN      
        1 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg
       61 gttgatgtcg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact
      121 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc
      181 tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc
      241 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc
      301 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca
      361 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg
      421 ttgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact
      481 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg
      541 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat
      601 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac
      661 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa
      721 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt
      781 caggaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca
      841 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggacaa acttagattg
      901 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa
      961 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag
     1021 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc
     1081 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca
     1141 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg
     1201 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga
     1261 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca
     1321 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg
     1381 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag
     1441 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca
     1501 gccgtctctg ctgatgtggg gtgctcggtg gacttctcaa agaaggagac gagatgtggt
     1561 acaggggtgt tcgtctataa cgacgttgaa gcctggaggg acaggtacaa gtaccatcct
     1621 gactcccccc gtagattggc agcagcagtc aagcaagcct gggaagatgg tatctgcggg
     1681 atctcctctg tttcaagaat ggaaaacatc atgtggagat cagtagaagg ggagctcaac
     1741 gcaatcctgg aagagaatgg agttcaactg acggtcgttg tgggatctgt aaaaaacccc
     1801 atgtggagag gtccacagag attgcccgtg cctgtgaacg agctgcccca cggctggaag
     1861 gcttggggga aatcgtactt cgtcagagca gcaaagacaa ataacagctt tgtcgtggat
     1921 ggtgacacac tgaaggaatg cccactcaaa catagagcat ggaacagctt tcttgtggag
     1981 gatcatgggt tcggggtatt tcacactagt gtctggctca aggttagaga agattattca
     2041 ttagagtgtg atccagccgt tattggaaca gctgttaagg gaaaggaggc tgtacacagt
     2101 gatctaggct actggattga gagtgagaag aatgacacat ggaggctgaa gagggcccat
     2161 ctgatcgaga tgaaaacatg tgaatggcca aagtcccaca cattgtggac agatggaata
     2221 gaagagagtg atctgatcat acccaagtct ttagctgggc cactcagcca tcacaatacc
     2281 agagagggct acaggaccca aatgaaaggg ccatggcaca gtgaagagct tgaaattcgg
     2341 tttgaggaat gcccaggcac taaggtccac gtggaggaaa catgtggaac aagaggacca
     2401 tctctgagat caaccactgc aagcggaagg gtgatcgagg aatggtgctg cagggagtgc
     2461 acaatgcccc cactgtcgtt ctgggctaaa gatggctgtt ggtatggaat ggagataagg
     2521 cccaggaaag aaccagaaag caacttagta aggtcaatgg tgactgcagg atcaactgat
     2581 cacatggatc acttctccct t
 

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
46504650100%0.099%KU321639.1
46464646100%0.099%KU365778.1
46464646100%0.099%KJ776791.1
46414641100%0.099%KU365780.1
46414641100%0.099%KU365779.1
46414641100%0.099%KU365777.1
46234623100%0.099%KU312312.1
45384538100%0.099%KF993678.1
45074507100%0.098%EU545988.1
45064506100%0.098%JN860885.1
41294129100%0.095%HQ234499.1
34293429100%0.089%KF268950.1
34293429100%0.089%KF268948.1
3407340773%0.099%KU312315.1
3407340773%0.099%KU312314.1
3393339373%0.099%KU312313.1

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
46914691100%0.0100%KU646828.1
46774677100%0.099%KU647676.1
46734673100%0.099%KU646827.1
46644664100%0.099%KU509998.1
46594659100%0.099%KU321639.1
46554655100%0.099%KU501217.1
46554655100%0.099%KU501216.1
46554655100%0.099%KU365778.1
46554655100%0.099%KJ776791.1
46504650100%0.099%KU365780.1
46504650100%0.099%KU365779.1
46504650100%0.099%KU365777.1
46464646100%0.099%KU501215.1
46324632100%0.099%KU312312.1
45474547100%0.099%KF993678.1
45164516100%0.099%EU545988.1
45154515100%0.099%JN860885.1
41294129100%0.095%HQ234499.1

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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
46914691100%0.0100%KU646827.1
46734673100%0.099%KU646828.1
46684668100%0.099%KU647676.1
46554655100%0.099%KU509998.1
46504650100%0.099%KU321639.1
46464646100%0.099%KU501217.1
46464646100%0.099%KU501216.1
46464646100%0.099%KU365778.1
46464646100%0.099%KJ776791.1
46414641100%0.099%KU365780.1
46414641100%0.099%KU365779.1
46414641100%0.099%KU365777.1
46374637100%0.099%KU501215.1
46234623100%0.099%KU312312.1
45384538100%0.099%KF993678.1
45074507100%0.098%EU545988.1
45064506100%0.098%JN860885.1
41294129100%0.095%HQ234499.1

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