2016/2017 Israel H5N8 Wild Bird and Poultry Sequences Match Asia

niman · February 17, 2018

Kimron Veterinary Institute in Israel has release 10 H5 wild bird and poultry sequences collected between December 2016 and February 2017 which are largely most closely to isolates from China and South Korea.

Edited February 17, 2018 by niman

niman · February 17, 2018

	edit	Name	Isolate ID	Subtype	Passage	PB2	PB1	PA	HA	NP	NA	MP	NS	HE	P3	Collection date

Name	Isolate ID	Subtype	Passage	PB2	PB1	PA	HA	NP	NA	MP	NS	HE	P3	Collection date
A/turkey/Israel/184/2017	EPI_ISL_298649	H5N8	passage details: E1	---	---	---	1748	---	---	---	---	---	---	2017-02-05
A/peregrine falcon/Israel/1086/2016	EPI_ISL_298653	H5N8	passage details: E1	---	---	---	1748	---	---	---	---	---	---	2016-12-25
A/great egret/Israel/1084/2016	EPI_ISL_298651	H5N8	passage details: E1	---	---	---	1721	---	---	---	---	---	---	2016-12-25
A/great egret/Israel/1088/2016	EPI_ISL_298648	H5N8	passage details: E1	---	---	---	1748	---	---	---	---	---	---	2016-12-25
A/turkey/Israel/1076/2016	EPI_ISL_298650	H5N8	passage details: E1	---	---	---	1748	---	---	---	---	---	---	2016-12-24
A/chicken/Israel/1048/2016	EPI_ISL_298642	H5N8	passage details: E1	---	---	---	1748	---	---	---	---	---	---	2016-12-20
A/turkey/Israel/1045/2016	EPI_ISL_298640	H5N8	passage details: E1	---	---	---	1748	---	---	---	---	---	---	2016-12-20
A/cormorant/Israel/1035/2016	EPI_ISL_298647	H5N8	passage details: E1	---	---	---	1748	---	---	---	---	---	---	2016-12-19
A/grey goose/Israel/986/2016	EPI_ISL_298652	H5N8	passage details: E1	---	---	---	1629	---	---	---	---	---	---	2016-12-12
A/chicken/Israel/881/2016	EPI_ISL_298641	H5N8	passage details: E1	---	---	---	1717	---	---	---	---	---	---	2016-12-07

niman · February 17, 2018

LOCUS       MF166576                1748 bp    cRNA    linear   VRL 01-FEB-2018
DEFINITION  Influenza A virus (A/turkey/Israel/184/2017(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   MF166576
VERSION     MF166576.1
KEYWORDS    .
SOURCE      Influenza A virus (A/turkey/Israel/184/2017(H5N8))
  ORGANISM  Influenza A virus (A/turkey/Israel/184/2017(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N8 isolated in Israel
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2017) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan v. DNASTAR Lasergene 8
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Influenza A virus
                     (A/turkey/Israel/184/2017(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/turkey/Israel/184/2017"
                     /serotype="H5N8"
                     /host="tyrkey"
                     /db_xref="taxon:2005440"
                     /segment="4"
                     /country="Israel"
                     /collection_date="05-Feb-2017"
                     /note="passage details: E1"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ASA45892.1"
                     /translation="MEKIVLLLAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGSLNDYEELKHLLSRINHFEKILIIPKSSWPNHETSLGVSAACPYQGTPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAEEQTNLYKNPTTYISVGT
                     STLNQRLVPKIATRSQVNGQRGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSGVEYGHCNTKCQTPVGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLREKRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcaata gttagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ttcgacagag caagttgaca cgataatgga aaagaacgtc
      121 actgttacac atgcccaaga catactggaa aaaacacaca acgggaagct ctgcgatcta
      181 aatggggtga agcctctgat tttaaaggat tgtagtgtag ctggatggct cctcggaaac
      241 ccaatgtgcg acgaattcat cagagtgccg gaatggtctt acatagtgga gagggctaat
      301 ccagctaatg acctctgtta cccagggagc ctcaatgact atgaagaact gaaacacctg
      361 ttgagcagaa taaatcattt tgagaagatt ctgatcatcc ccaagagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagct tgtccatacc agggaacgcc ctcctttttc
      481 agaaatgtgg tatggcttat caaaaagaac gatgcatacc caacaataaa gataagctac
      541 aataatacca atcgggaaga tctcttgata ctgtggggga ttcatcattc caacaatgca
      601 gaagagcaga caaatctcta taaaaaccca accacctata tttcagttgg aacatcaaca
      661 ttaaaccaga gattggtacc aaaaatagct actagatccc aagtaaacgg gcaacgtgga
      721 agaatggact tcttctggac aattttaaaa ccgaatgatg caatccattt cgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaggggga ctcaacaatt
      841 atgaaaagtg gagtggaata tggccactgc aacaccaaat gtcaaacccc agtaggagcg
      901 ataaactcta gtatgccatt ccacaatata catcctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaagtt ggtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 aagagaagaa aaagagggct gtttggggct atagcaggtt ttatagaggg aggatggcag
     1081 ggaatggttg atggttggta tgggtaccac catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcgatc
     1201 attgacaaaa tgaacactca atttgaggca gttggaaggg agtttaataa cttagaaagg
     1261 aggatagaga atttgaacaa gaaaatggaa gacggattcc tagatgtctg gacctataat
     1321 gctgaacttc tagttctcat ggaaaacgag aggactctag atttccatga ctcaaatgtc
     1381 aagaaccttt atgacaaagt cagactgcag cttagggata atgcaaagga gctgggtaac
     1441 ggttgtttcg aattctatca caaatgtgat aatgaatgta tggaaagtgt gagaaatggg
     1501 acgtatgact accctcagta ttcagaagaa gcaagattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccaa atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat ggtggctggt ctatctttat ggatgtgctc caatgggtcg
     1681 ttacagtgca gaatttgcat ttaaatttgt gagctcagat tgtagttaaa aacacccttg
     1741 tttctact

niman · February 17, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1176526	A/turkey/Israel/184/2017 (A/H5N8) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI954559	A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA)	3131.2	0.000000e+00	1701/1704 (99%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	3125.7	0.000000e+00	1700/1704 (99%)
EPI954813	A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA)	3125.7	0.000000e+00	1700/1704 (99%)
EPI1019558	A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI1019638	A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI1019582	A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI1019550	A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI1019518	A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI1019510	A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI943320	A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI931145	A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI868848	A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1698/1704 (99%)
EPI1176528	A/great egret/Israel/1084/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019734	A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019678	A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019646	A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019630	A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019622	A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019614	A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019606	A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019590	A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019430	A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019406	A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019398	A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1007675	A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI959460	A/Eurasian Wigeon/Netherlands/9/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI959413	A/Eurasian Wigeon/Netherlands/4/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI954607	A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI954575	A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI942943	A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI869687	A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA)	3105.3	0.000000e+00	1696/1704 (99%)
EPI1045611	A/chicken/Rostov-on-Don/44/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019534	A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019526	A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019478	A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019438	A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI954759	A/Peregrine_falcon/Hungary/4882/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI954583	A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI909444	A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1023562	A/Eurasian_Wigeon/Netherlands/11/2016 (A/H5N8) segment 4 (HA)	3101.6	0.000000e+00	1693/1700 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	3099.8	0.000000e+00	1695/1704 (99%)
EPI1176524	A/cormorant/Israel/1035/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019718	A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1007667	A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI990770	A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI909436	A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI859650	A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI907346	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA)	3094.3	0.000000e+00	1693/1702 (99%)
EPI1176517	A/turkey/Israel/1045/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1023578	A/Eurasian_Wigeon/Netherlands/23/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1686/1692 (99%)
EPI1021106	A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019766	A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019422	A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI969254	A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI961449	A/gadwall/Kurgan/2442/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI942935	A/turkey/England/003778/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI931207	A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909428	A/turkey/Rostov-on-Don/11/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909404	A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909396	A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909388	A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909380	A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI888088	A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI869940	A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI869936	A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI861011	A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI860401	A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI859653	A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI859212	A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1040223	A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA)	3088.7	0.000000e+00	1693/1704 (99%)
EPI909364	A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA)	3088.7	0.000000e+00	1693/1704 (99%)
EPI1169147	A/chicken/Rostov-on-Don/1321/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1159825	A/Cygnus atratus/Hubei/HF-1/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1159809	A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1023581	A/Back-headed_Gull/Netherlands/9/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019878	A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019870	A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019862	A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019790	A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019782	A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019774	A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019758	A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019750	A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019726	A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019710	A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019702	A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019670	A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019598	A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019574	A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019542	A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019494	A/Dk/NL-Stolwijk/16016291-016-020/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)

niman · February 17, 2018

LOCUS       MF166577                1748 bp    cRNA    linear   VRL 01-FEB-2018
DEFINITION  Influenza A virus (A/peregrine falcon/Israel/1086/2016(H5N8))
            segment 4 hemagglutinin (HA) gene, complete cds.
ACCESSION   MF166577
VERSION     MF166577.1
KEYWORDS    .
SOURCE      Influenza A virus (A/peregrine falcon/Israel/1086/2016(H5N8))
  ORGANISM  Influenza A virus (A/peregrine falcon/Israel/1086/2016(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N8 isolated in Israel
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2017) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan v. DNASTAR Lasergene 8
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Influenza A virus (A/peregrine
                     falcon/Israel/1086/2016(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/peregrine falcon/Israel/1086/2016"
                     /serotype="H5N8"
                     /host="peregrine falcon"
                     /db_xref="taxon:2005437"
                     /segment="4"
                     /country="Israel"
                     /collection_date="25-Dec-2016"
                     /note="passage details: E1"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ASA45893.1"
                     /translation="MEKIVLLLAIVSLVESDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGSLNDYEELKHLLSRINHFEKILIIPKSSWPNHETSLGVSAACPYQGTPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAEEQTNLYKNPTTYISVGT
                     STLNQRLVPKIATRSQVNGQRGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEVEYGHCNTKCQTPVGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NNPLREKRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHQCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcaata gttagccttg ttgaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcgacagag caagttgaca cgataatgga aaagaacgtc
      121 actgttacac atgcccaaga catactggaa aaaacacaca acgggaagct ctgcgatcta
      181 aatggggtga agcctctgat tttaaaggat tgtagtgtag ctggatggct cctcggaaac
      241 ccaatgtgcg acgaattcat cagagtgccg gaatggtctt acatagtgga gagggctaac
      301 ccagctaatg acctctgtta cccagggagc ctcaatgact atgaagaact gaaacacctg
      361 ttgagcagaa taaatcattt tgagaagatt ctgatcatcc ccaagagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagct tgtccatacc agggaacgcc ctcctttttc
      481 agaaatgtgg tatggcttat caaaaagaac gatgcatacc caacaataaa gataagctac
      541 aataatacca atcgggaaga tctcttgata ctgtggggga ttcatcattc caacaatgca
      601 gaagagcaga caaatctcta taaaaaccca accacctata tttcagttgg aacatcaaca
      661 ttaaaccaga gattggtacc aaaaatagct actagatccc aagtaaacgg gcaacgggga
      721 agaatggact tcttctggac aattttaaaa ccgaatgatg caatccactt cgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg aagtggaata tggccactgc aacaccaaat gtcaaacccc agtgggagcg
      901 ataaactcta gtatgccatt ccacaatata catcctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaagtt ggtccttgcg actgggctca gaaataatcc tctaagagaa
     1021 aagagaagaa aaagagggct gtttggggct atagcaggtt ttatagaggg aggatggcag
     1081 ggaatggttg atggttggta tgggtaccat catagcaatg agcagggaag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcgata gatggagtta ccaataaggt caactcgatc
     1201 attgacaaaa tgaacactca atttgaggca gttggaaggg agtttaataa cttagaaagg
     1261 aggatagaga atttgaacaa gaaaatggaa gacggattcc tagatgtctg gacctataat
     1321 gctgaacttc tagttctcat ggaaaacgag aggactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt cagactgcag cttagggata atgcaaagga gctgggtaac
     1441 ggttgtttcg agttctatca ccaatgtgat aatgaatgta tggaaagtgt gagaaatggg
     1501 acgtatgact accctcagta ttcagaagaa gcaagattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccaa atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat ggtggctggt ctatctttat ggatgtgctc caatgggtcg
     1681 ttacagtgca gaatttgcat ttaaatttgt gagctcagat tgtagttaaa aacacccttg
     1741 tttctact

niman · February 17, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1176530	A/peregrine falcon/Israel/1086/2016 (A/H5N8) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1176527	A/turkey/Israel/1076/2016 (A/H5N8) segment 4 (HA)	3142.3	0.000000e+00	1703/1704 (99%)
EPI1006681	A/common teal/Korea/W549/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1006680	A/common teal/Korea/W547/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1006705	A/common teal/Korea/W555/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1006704	A/common teal/Korea/W550/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1006703	A/common teal/Korea/W548/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI952639	A/chicken/Korea/H903/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1692/1704 (99%)
EPI1159809	A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1034974	A/grey heron/W779/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI954567	A/turkey/Italy/17VIR538-1/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI952782	A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI926613	A/domestic duck/Siberia/103/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI926605	A/domestic duck/Siberia/50K/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI925956	A/gadwall/Chany/97/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774458	A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774450	A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774402	A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774378	A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774326	A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774318	A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774277	A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774267	A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774226	A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774218	A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774210	A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774201	A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774193	A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI907346	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA)	3077.6	0.000000e+00	1690/1702 (99%)
EPI1021106	A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1010500	A/green-winged teal/Egypt/877/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI931207	A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI881901	A/mute swan/Croatia/15/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI869936	A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI858844	A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI836614	A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI836606	A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI823756	A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI823748	A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI823460	A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774490	A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774483	A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774434	A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774410	A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774394	A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774386	A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774369	A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774335	A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774310	A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774294	A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774286	A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774242	A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774234	A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774142	A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774133	A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774121	A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774113	A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI773757	A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI1169147	A/chicken/Rostov-on-Don/1321/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1159825	A/Cygnus atratus/Hubei/HF-1/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019558	A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1010489	A/green-winged teal/Egypt/871/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI964917	A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI954559	A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI887468	A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI864746	A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI861568	A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI860519	A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774475	A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774442	A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI774352	A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774302	A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774259	A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774251	A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774185	A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774176	A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774168	A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774159	A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774150	A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI978865	A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA)	3068.4	0.000000e+00	1689/1704 (99%)
EPI869924	A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA)	3066.6	0.000000e+00	1689/1704 (99%)
EPI1176526	A/turkey/Israel/184/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032549	A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032532	A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032524	A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032508	A/Goose/Hungary/17985/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032492	A/Goose/Hungary/17051/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032484	A/Goose/Hungary/15729/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032476	A/Goose/Hungary/17261/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1021135	A/quail/Czech Republic/2063-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)

niman · February 17, 2018

LOCUS       MF166580                1721 bp    cRNA    linear   VRL 01-FEB-2018
DEFINITION  Influenza A virus (A/great egret/Israel/1084/2016(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   MF166580
VERSION     MF166580.1
KEYWORDS    .
SOURCE      Influenza A virus (A/great egret/Israel/1084/2016(H5N8))
  ORGANISM  Influenza A virus (A/great egret/Israel/1084/2016(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1721)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N8 isolated in Israel
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1721)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2017) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan v. DNASTAR Lasergene 8
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1721
                     /organism="Influenza A virus (A/great
                     egret/Israel/1084/2016(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/great egret/Israel/1084/2016"
                     /serotype="H5N8"
                     /host="great egret"
                     /db_xref="taxon:2005434"
                     /segment="4"
                     /country="Israel"
                     /collection_date="25-Dec-2016"
                     /note="passage details: E1"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ASA45896.1"
                     /translation="MEKIVLLLAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGSLNDYEELKHLLSRINHFEKILIIPKSSWPNHETSLGVSAACPYQGTPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAEEQTNLYKNPTTYISVGT
                     STLNQRLVPKIATRSQVNGQRGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSGVEYGHCNTKCQTPVGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLREKRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcaata gttagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcgacagag caagttgaca cgataatgga aaagaacgtc
      121 actgttacac atgcccaaga catactggaa aaaacacaca acgggaagct ctgcgatcta
      181 aatggggtga agcctttgat tttaaaggat tgtagtgtag ctggatggct cctcggaaat
      241 ccaatgtgcg acgaattcat cagagtgccg gaatggtctt acatagtgga gagggctaat
      301 ccagctaatg acctctgtta cccagggagc ctcaatgact atgaagaact gaaacacctg
      361 ttgagcagaa taaatcattt tgagaagatt ctgatcatcc ccaagagttc ttggcccaat
      421 catgaaacat cattaggggt aagcgcagct tgtccatacc agggaacgcc ctcctttttc
      481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc caacaataaa gataagctac
      541 aataatacca atcgggaaga tctcttgata ctgtggggaa ttcatcattc caacaatgca
      601 gaagagcaga caaatctcta taaaaaccca accacctata tttcagttgg aacatcaaca
      661 ttaaaccaga gattggtacc aaaaatagct actagatccc aagtaaacgg gcaacgtgga
      721 agaatggact tcttctggac aattttaaaa ccgaatgatg caatccattt cgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg gagtggaata tggccactgc aacaccaaat gtcaaacccc agtaggagcg
      901 ataaactcta gtatgccatt ccacaatata catcctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaagtt ggtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 aagagaagaa aaagagggct gtttggggct atagcaggtt ttatagaggg aggatggcag
     1081 ggaatggttg atggttggta tgggtaccac catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcgatc
     1201 attgacaaaa tgaacactca atttgaggca gttggaaggg agtttaataa cttagaaagg
     1261 aggatagaga atttgaacaa gaaaatggaa gacggattcc tagatgtctg gacctataat
     1321 gctgaacttc tagttctcat ggaaaacgag aggactctag atttccatga ctcaaatgtc
     1381 aagaaccttt atgacaaagt cagactgcag cttagggata atgcaaagga gctgggtaac
     1441 ggttgtttcg aattctatca caaatgtgat aatgaatgta tggaaagtgt gagaaatggg
     1501 acgtatgact accctcagta ttcagaagaa gcaagattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccaa atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat ggtggctggt ctatctttat ggatgtgctc caatgggtcg
     1681 ttacagtgca gaatttgcat ttaaatttgg gagctcagat g

niman · February 17, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1176528	A/great egret/Israel/1084/2016 (A/H5N8) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1176517	A/turkey/Israel/1045/2016 (A/H5N8) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI1176525	A/great egret/Israel/1088/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1699/1705 (99%)
EPI1176524	A/cormorant/Israel/1035/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1699/1705 (99%)
EPI1176526	A/turkey/Israel/184/2017 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019630	A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019614	A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1007675	A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI954607	A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI954575	A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI954559	A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI869687	A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA)	3099.8	0.000000e+00	1695/1704 (99%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1045611	A/chicken/Rostov-on-Don/44/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019638	A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019582	A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019550	A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019534	A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019526	A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019518	A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019510	A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI954813	A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI943320	A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI909444	A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI868848	A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019734	A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019718	A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019678	A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019646	A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019622	A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019606	A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019590	A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019558	A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019430	A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019406	A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019398	A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1007667	A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI959413	A/Eurasian Wigeon/Netherlands/4/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI942943	A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI922508	A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909436	A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI859650	A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019766	A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019478	A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019438	A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019422	A/Ch/NL-Hiaure/16016112-001-005/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI969254	A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI954583	A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI931145	A/duck/Czech Republic/1467-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI909428	A/turkey/Rostov-on-Don/11/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI909404	A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI909396	A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI909388	A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI909380	A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI888088	A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI869940	A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI861011	A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI860509	A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI860401	A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI859653	A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI859212	A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1023562	A/Eurasian_Wigeon/Netherlands/11/2016 (A/H5N8) segment 4 (HA)	3085.0	0.000000e+00	1690/1700 (99%)
EPI1040223	A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1692/1704 (99%)
EPI909364	A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1692/1704 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1692/1704 (99%)
EPI1023581	A/Back-headed_Gull/Netherlands/9/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019878	A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019870	A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019862	A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019790	A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019782	A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019774	A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019758	A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019750	A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019726	A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019710	A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019702	A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019670	A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019598	A/Eur_Wig/NL-Terschelling/16015692-010/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019574	A/Eur_Wig/NL-Leeuwarden/16015699-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019542	A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019446	A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1019382	A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI990770	A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI959460	A/Eurasian Wigeon/Netherlands/9/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI954783	A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI909420	A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI909412	A/chicken/Voronezh/19/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI864746	A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI863865	A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI861568	A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI861224	A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)

niman · February 17, 2018

LOCUS       MF166573                1748 bp    cRNA    linear   VRL 01-FEB-2018
DEFINITION  Influenza A virus (A/great egret/Israel/1088/2016(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   MF166573
VERSION     MF166573.1
KEYWORDS    .
SOURCE      Influenza A virus (A/great egret/Israel/1088/2016(H5N8))
  ORGANISM  Influenza A virus (A/great egret/Israel/1088/2016(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N8 isolated in Israel
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2017) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan v. DNASTAR Lasergene 8
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Influenza A virus (A/great
                     egret/Israel/1088/2016(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/great egret/Israel/1088/2016"
                     /serotype="H5N8"
                     /host="great egret"
                     /db_xref="taxon:2005435"
                     /segment="4"
                     /country="Israel"
                     /collection_date="25-Dec-2016"
                     /note="passage details: E1"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ASA45889.1"
                     /translation="MEKIVLLLAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGSLNDYEELKHLLSRINHFEKILIIPKSSWPNHETSLGVSAACPYQGTPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAEEQTNLYKNPTTYISVGT
                     STLNQRLVPKIATRSQVNGQRGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSGVEYGHCNTKCQTPVGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATRLR
                     NSPLREKRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESMGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcaata gttagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcgacagag caagttgaca cgataatgga aaagaacgtc
      121 actgttacac atgcccaaga catactggaa aaaacacaca acgggaagct ctgcgatcta
      181 aatggggtga agcctttgat tttaaaggat tgtagtgtag ctggatggct cctcggaaat
      241 ccaatgtgcg acgaattcat cagagtgccg gaatggtctt acatagtgga gagggctaat
      301 ccagctaatg acctctgtta cccagggagc ctcaatgact atgaagaact gaaacacctg
      361 ttgagcagaa taaatcattt tgagaagatt ctgatcatcc ccaagagttc ttggcccaat
      421 catgaaacat cattaggggt aagcgcagct tgtccatacc agggaacgcc ctcctttttc
      481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc caacaataaa gataagctac
      541 aataatacca atcgggaaga tctcttgata ctgtggggaa ttcatcattc caacaatgca
      601 gaagagcaga caaatctcta taaaaaccca accacctata tttcagttgg aacatcaaca
      661 ttaaaccaga gattggtacc aaaaatagct actagatccc aagtaaacgg gcaacgtgga
      721 agaatggact tcttctggac aattttaaaa ccgaatgatg caatccattt cgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg gagtggaata tggccactgc aacaccaaat gtcaaacccc agtaggagcg
      901 ataaactcta gtatgccgtt ccacaatata catcctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaagtt ggtcttggcg actaggctca gaaatagtcc tctaagagaa
     1021 aagagaagaa aaagagggct gtttggggct atagcaggtt ttatagaggg aggatggcag
     1081 ggaatggttg atggttggta tgggtaccac catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcgatc
     1201 attgacaaaa tgaacactca atttgaggca gttggaaggg agtttaataa cttagaaagg
     1261 aggatagaga atttgaacaa gaaaatggaa gacggattcc tagatgtctg gacctataat
     1321 gctgaacttc tagttctcat ggaaaacgag aggactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt cagactgcag cttagggata atgcaaagga gctgggtaac
     1441 ggttgtttcg aattctatca caaatgtgat aatgaatgta tggaaagtgt gagaaatggg
     1501 acgtatgact accctcagta ttcagaagaa gcaagattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatggg aacttaccaa atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat ggtggctggt ctatctttat ggatgtgctc caatgggtcg
     1681 ttacagtgca gaatttgcat ttaaatttgt gagctcagat tgtagttaaa aacacccttg
     1741 tttctact

niman · February 17, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1176525	A/great egret/Israel/1088/2016 (A/H5N8) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1176517	A/turkey/Israel/1045/2016 (A/H5N8) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI1176528	A/great egret/Israel/1084/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1699/1705 (99%)
EPI1176524	A/cormorant/Israel/1035/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1698/1706 (99%)
EPI1019630	A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1019614	A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1007675	A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI954607	A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI954575	A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI869687	A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA)	3088.7	0.000000e+00	1694/1705 (99%)
EPI1045611	A/chicken/Rostov-on-Don/44/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019638	A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019582	A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019550	A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019534	A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019526	A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019518	A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019510	A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI943320	A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI909444	A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019718	A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019678	A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019646	A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019622	A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019606	A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019590	A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019430	A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019406	A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019398	A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1007667	A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI959413	A/Eurasian Wigeon/Netherlands/4/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI954559	A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI942943	A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI922508	A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI909436	A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI859650	A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1176526	A/turkey/Israel/184/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1693/1706 (99%)
EPI1019766	A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI1019478	A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI1019438	A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI969254	A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI954813	A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI954583	A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI909428	A/turkey/Rostov-on-Don/11/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI909404	A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI909396	A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI909388	A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI909380	A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI888088	A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI869940	A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI868848	A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI861011	A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI860509	A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI860401	A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI859653	A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI859212	A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI1023562	A/Eurasian_Wigeon/Netherlands/11/2016 (A/H5N8) segment 4 (HA)	3073.9	0.000000e+00	1689/1701 (99%)
EPI1040223	A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA)	3072.1	0.000000e+00	1691/1705 (99%)
EPI909364	A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA)	3072.1	0.000000e+00	1691/1705 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	3072.1	0.000000e+00	1691/1705 (99%)
EPI1019878	A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019870	A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019862	A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019790	A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019782	A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019774	A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019758	A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019750	A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019734	A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019726	A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019710	A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019702	A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019670	A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019558	A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019542	A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019446	A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019382	A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI990770	A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI954783	A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI909420	A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI909412	A/chicken/Voronezh/19/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI864746	A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI863865	A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI861568	A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI861224	A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI860519	A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI860393	A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI907346	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA)	3066.6	0.000000e+00	1689/1703 (99%)
EPI1040225	A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1690/1705 (99%)
EPI1032549	A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1690/1705 (99%)
EPI1032532	A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1690/1705 (99%)

niman · February 17, 2018

LOCUS       MF166578                1748 bp    cRNA    linear   VRL 01-FEB-2018
DEFINITION  Influenza A virus (A/turkey/Israel/1076/2016(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   MF166578
VERSION     MF166578.1
KEYWORDS    .
SOURCE      Influenza A virus (A/turkey/Israel/1076/2016(H5N8))
  ORGANISM  Influenza A virus (A/turkey/Israel/1076/2016(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N8 isolated in Israel
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2017) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan v. DNASTAR Lasergene 8
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Influenza A virus
                     (A/turkey/Israel/1076/2016(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/turkey/Israel/1076/2016"
                     /serotype="H5N8"
                     /host="tyrkey"
                     /db_xref="taxon:2005439"
                     /segment="4"
                     /country="Israel"
                     /collection_date="24-Dec-2016"
                     /note="passage details: E1"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ASA45894.1"
                     /translation="MEKIVLLLAIVSLVESDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGSLNDYEELKHLLSRINHFEKILIIPKSSWPNHETSLGVSAACPYQGTPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAEEQTNLYKNPTTYISVGT
                     STLNQRLVPKIATRSQVNGQRGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEVEYGHCNTKCQTPVGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NNPLREKRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHQCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcaata gttagccttg ttgaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcgacagag caagttgaca cgataatgga aaagaacgtc
      121 actgttacac atgcccaaga catactggaa aaaacacaca acgggaagct ctgcgatcta
      181 aatggggtga agcctctgat tttaaaggat tgtagtgtag ctggatggct cctcggaaac
      241 ccaatgtgcg acgaattcat cagagtgccg gaatggtctt acatagtgga gagggctaac
      301 ccagctaatg acctctgtta cccagggagc ctcaatgact atgaagaact gaaacacctg
      361 ttgagcagaa taaatcattt tgagaagatt ctgatcatcc ccaagagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagct tgtccatacc agggaacgcc ctcctttttc
      481 agaaatgtgg tatggcttat caaaaagaac gatgcatacc caacaataaa gataagctac
      541 aataatacca atcgggaaga tctcttgata ctgtggggga ttcatcattc caacaatgca
      601 gaagagcaga caaatctcta taaaaaccca accacctata tttcagttgg aacatcaaca
      661 ttaaaccaga gattggtacc aaaaatagct actagatccc aagtaaacgg gcaacgggga
      721 agaatggact tcttctggac aattttaaaa ccgaatgatg caatccactt cgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg aagtggaata tggccactgc aacaccaaat gtcaaacccc agtgggagcg
      901 ataaactcta gtatgccatt ccacaatata catcctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaagtt ggtccttgcg actgggctca gaaataatcc tctaagagaa
     1021 aagagaagaa aaagagggct gtttggggct atagcaggtt ttatagaggg aggatggcag
     1081 ggaatggttg atggttggta tgggtaccat catagcaatg agcagggaag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcgatc
     1201 attgacaaaa tgaacactca atttgaggca gttggaaggg agtttaataa cttagaaagg
     1261 aggatagaga atttgaacaa gaaaatggaa gacggattcc tagatgtctg gacctataat
     1321 gctgaacttc tagttctcat ggaaaacgag aggactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt cagactgcag cttagggata atgcaaagga gctgggtaac
     1441 ggttgtttcg agttctatca ccaatgtgat aatgaatgta tggaaagtgt gagaaatggg
     1501 acgtatgact accctcagta ttcagaagaa gcaagattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccaa atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat ggtggctggt ctatctttat ggatgtgctc caatgggtcg
     1681 ttacagtgca gaatttgcat ttaaatttgt gagctcagat tgtagttaaa aacacccttg
     1741 tttctact

niman · February 17, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1176527	A/turkey/Israel/1076/2016 (A/H5N8) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1176530	A/peregrine falcon/Israel/1086/2016 (A/H5N8) segment 4 (HA)	3142.3	0.000000e+00	1703/1704 (99%)
EPI1006681	A/common teal/Korea/W549/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1697/1705 (99%)
EPI1006680	A/common teal/Korea/W547/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1697/1705 (99%)
EPI1006705	A/common teal/Korea/W555/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1006704	A/common teal/Korea/W550/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1006703	A/common teal/Korea/W548/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI952639	A/chicken/Korea/H903/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	3088.7	0.000000e+00	1693/1704 (99%)
EPI1159809	A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1034974	A/grey heron/W779/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI954567	A/turkey/Italy/17VIR538-1/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI952782	A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI926613	A/domestic duck/Siberia/103/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI926605	A/domestic duck/Siberia/50K/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI925956	A/gadwall/Chany/97/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774458	A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774450	A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774402	A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774378	A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774326	A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774318	A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774277	A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774267	A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774226	A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774218	A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774210	A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774201	A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI774193	A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI907346	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1691/1702 (99%)
EPI1021106	A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1010500	A/green-winged teal/Egypt/877/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI931207	A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI881901	A/mute swan/Croatia/15/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI869936	A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI858844	A/painted stork/India/10CA03/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI836614	A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI836606	A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI823756	A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI823748	A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI823460	A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774490	A/Brown-headed Gull/Qinghai/ZTO6-SP/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774483	A/Brown-headed Gull/Qinghai/ZTO6-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774434	A/Brown-headed Gull/Qinghai/ZTO1-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774410	A/Bar-headed Goose/Qinghai/BTY18-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774394	A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774386	A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774369	A/Bar-headed Goose/Qinghai/BTY16-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774335	A/Bar-headed Goose/Qinghai/BTY14-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774310	A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774294	A/Bar-headed Goose/Qinghai/BTY11-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774286	A/Bar-headed Goose/Qinghai/BTY11-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774242	A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774234	A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774142	A/Bar-headed Goose/Qinghai/BTY2-LU/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774133	A/Bar-headed Goose/Qinghai/BTY2-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774121	A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI774113	A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI773757	A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1169147	A/chicken/Rostov-on-Don/1321/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1159825	A/Cygnus atratus/Hubei/HF-1/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1019558	A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1010489	A/green-winged teal/Egypt/871/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI964917	A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI954559	A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI887468	A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI864746	A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI861568	A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI860519	A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774475	A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774442	A/Brown-headed Gull/Qinghai/ZTO3-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI774352	A/Bar-headed Goose/Qinghai/BTY15-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774302	A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774259	A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774251	A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774185	A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774176	A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774168	A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774159	A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774150	A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI978865	A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA)	3073.9	0.000000e+00	1690/1704 (99%)
EPI869924	A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA)	3072.1	0.000000e+00	1690/1704 (99%)
EPI1176526	A/turkey/Israel/184/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1032549	A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1032532	A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1032524	A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1032508	A/Goose/Hungary/17985/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1032492	A/Goose/Hungary/17051/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1032484	A/Goose/Hungary/15729/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1032476	A/Goose/Hungary/17261/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1021135	A/quail/Czech Republic/2063-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)

niman · February 18, 2018

LOCUS       MF166579                1748 bp    cRNA    linear   VRL 01-FEB-2018
DEFINITION  Influenza A virus (A/chicken/Israel/1048/2016(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   MF166579
VERSION     MF166579.1
KEYWORDS    .
SOURCE      Influenza A virus (A/chicken/Israel/1048/2016(H5N8))
  ORGANISM  Influenza A virus (A/chicken/Israel/1048/2016(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N8 isolated in Israel
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2017) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan v. DNASTAR Lasergene 8
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Influenza A virus
                     (A/chicken/Israel/1048/2016(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/chicken/Israel/1048/2016"
                     /serotype="H5N8"
                     /host="chicken"
                     /db_xref="taxon:2005431"
                     /segment="4"
                     /country="Israel"
                     /collection_date="20-Dec-2016"
                     /note="passage details: E1"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ASA45895.1"
                     /translation="MEKIVLLLAIVGLVKSDPICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGSLNDYEELKHLLSRINHFEKILIIPKSSWPNHETSLGVSAACPYQGTPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAEEQTNLYKNPTTYISVGT
                     STLNQRLVPKIATRSQVNGQRGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEVEYGHCNTKCQTPVGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLREKRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcaata gttggccttg ttaaaagtga tccgatttgc
       61 attggttacc atgcaaacaa ctcgacagag caagttgaca cgataatgga aaagaacgtc
      121 actgttacac atgcccaaga catactggaa aaaacacaca acgggaagct ctgcgattta
      181 aatggggtga aacctctgat tttaaaggat tgtagtgtag ctggatggct cctcggaaac
      241 ccaatgtgcg acgaattcat cagagtgccg gaatggtctt acatagtgga gagggctaac
      301 cccgctaatg acctctgtta cccagggagc ctcaatgact atgaagaact gaaacacctg
      361 ttgagcagaa taaatcattt tgagaagatt ctgatcatcc ccaagagttc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagct tgtccatacc agggaacgcc ctcctttttc
      481 agaaatgtgg tatggcttat caaaaagaac gatgcatacc caacaataaa gataagctac
      541 aataatacca atcgggaaga tctcttgata ctgtggggga ttcatcattc caacaatgca
      601 gaagagcaga caaatctcta taaaaaccca accacctata tttcggttgg aacatcaaca
      661 ttaaaccaga gattggtacc aaaaatagct actagatccc aagtaaacgg gcaacgtgga
      721 agaatggact tcttttggac aattttaaaa ccgaatgatg caatccactt cgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg aagtggaata tggccactgc aacaccaaat gtcaaacccc agtaggagcg
      901 ataaactcta gtatgccatt ccacaatata catcctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaagtt ggtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 aagagaagaa aaagagggct gtttggggct atagcaggtt ttatagaggg aggatggcag
     1081 ggaatggttg atggttggta tgggtaccac catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaagcaata gatggagtta ccaataaggt caactcgatc
     1201 attgacaaaa tgaacactca atttgaggca gttggaaggg agtttaataa cttagaaagg
     1261 aggatagaga atttgaacaa gaaaatggaa gacggattcc tagatgtctg gacctataat
     1321 gctgaacttc tagttctcat ggaaaacgag aggactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt cagactgcag cttagggata atgcaaagga gctgggtaac
     1441 ggttgtttcg agttctatca caaatgtgat aatgaatgta tggaaagtgt gagaaatggg
     1501 acgtatgact accctcagta ttcagaagaa gcaagattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccaa atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat ggtggctggt ctatctttat ggatgtgctc caatgggtcg
     1681 ttacagtgca gaatttgcat ttaaatttgt gagctcagat tgtagttaaa aacacccttg
     1741 tttctact

niman · February 18, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1176519	A/chicken/Israel/1048/2016 (A/H5N8) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1159809	A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1692/1704 (99%)
EPI1159825	A/Cygnus atratus/Hubei/HF-1/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI907346	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA)	3077.6	0.000000e+00	1690/1702 (99%)
EPI1021106	A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1006681	A/common teal/Korea/W549/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1006680	A/common teal/Korea/W547/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI931207	A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI869936	A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI836614	A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI836606	A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI823756	A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI823748	A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI823460	A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774394	A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774386	A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774310	A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774242	A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774234	A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774121	A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774113	A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI773757	A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI1176518	A/chicken/Israel/881/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1169147	A/chicken/Rostov-on-Don/1321/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1159817	A/Cygnus atratus/Hubei/2Z2-O/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1006705	A/common teal/Korea/W555/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1006704	A/common teal/Korea/W550/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1006703	A/common teal/Korea/W548/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI954559	A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI864746	A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI861568	A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI860519	A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774475	A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774458	A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774450	A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774402	A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774378	A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774326	A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774318	A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774302	A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774277	A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774267	A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774259	A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774251	A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774226	A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774218	A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774210	A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774201	A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774193	A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774185	A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774176	A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774168	A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774159	A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774150	A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI978865	A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA)	3068.4	0.000000e+00	1689/1704 (99%)
EPI869924	A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA)	3066.6	0.000000e+00	1689/1704 (99%)
EPI1176527	A/turkey/Israel/1076/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1176526	A/turkey/Israel/184/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032549	A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032532	A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032524	A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032508	A/Goose/Hungary/17985/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032492	A/Goose/Hungary/17051/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032484	A/Goose/Hungary/15729/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032476	A/Goose/Hungary/17261/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1021135	A/quail/Czech Republic/2063-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1021132	A/goose/Czech Republic/1954-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1019638	A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1019582	A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1019550	A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1019518	A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1019510	A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI964917	A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI962046	A/Duck/Hungary/54738/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI961525	A/chicken/Italy/17VIR1751-3/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI961500	A/shelduck/Italy/17VIR1572-24/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI959539	A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI954813	A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI954655	A/Duck/Hungary/984/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI954639	A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI952639	A/chicken/Korea/H903/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI943320	A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI930838	A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI919636	A/chicken/Czech Republic/585-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI891670	A/greylag goose/Croatia/33/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI887468	A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI881901	A/mute swan/Croatia/15/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI869929	A/mute swan/Poland/108/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI868848	A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI866978	A/duck/Hungary/60441/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)

niman · February 18, 2018

LOCUS       MF166574                1748 bp    cRNA    linear   VRL 01-FEB-2018
DEFINITION  Influenza A virus (A/turkey/Israel/1045/2016(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   MF166574
VERSION     MF166574.1
KEYWORDS    .
SOURCE      Influenza A virus (A/turkey/Israel/1045/2016(H5N8))
  ORGANISM  Influenza A virus (A/turkey/Israel/1045/2016(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N8 isolated in Israel
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2017) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan v. DNASTAR Lasergene 8
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Influenza A virus
                     (A/turkey/Israel/1045/2016(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/turkey/Israel/1045/2016"
                     /serotype="H5N8"
                     /host="turkey"
                     /db_xref="taxon:2005438"
                     /segment="4"
                     /country="Israel"
                     /collection_date="20-Dec-2016"
                     /note="passage details: E1"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ASA45890.1"
                     /translation="MEKIVLLLAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGSLNDYEELKHLLSRINHFEKILIIPKSSWPNHETSLGVSAACPYQGTPSFF
                     RNVVWLIKKNNAYPTIKISYNNTNREDLLILWGIHHSNNAEEQTNLYKNPTTYISVGT
                     STLNQRLVPKIATRSQVNGQRGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSGVEYGHCNTKCQTPVGAINSSMPFHNIHPLTIGECPKYVKSNKLVFATGLR
                     NSPLREKRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcaata gttagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcgacagag caagttgaca cgataatgga aaagaacgtc
      121 actgttacac atgcccaaga catactggaa aaaacacaca acgggaagct ctgcgatcta
      181 aatggggtga agcctttgat tttaaaggat tgtagtgtag ctggatggct cctcggaaac
      241 ccaatgtgcg acgaattcat cagagtgccg gaatggtctt acatagtgga gagggctaat
      301 ccagctaatg acctctgtta cccagggagc ctcaatgact atgaagaact gaaacacctg
      361 ttgagcagaa taaatcattt tgagaagatt ctgatcatcc ccaagagttc ttggcccaat
      421 catgaaacat cattaggggt aagcgcagct tgtccatacc agggaacgcc ctcctttttc
      481 agaaatgtgg tatggctcat caaaaagaac aatgcatacc caacaataaa gataagctac
      541 aataatacca atcgggaaga tctcttgata ctgtggggaa ttcatcattc caacaatgca
      601 gaagagcaga caaatctcta taaaaaccca accacctata tttcagttgg aacatcaaca
      661 ttaaaccaga gattggtacc aaaaatagct actagatccc aagtaaacgg gcaacgtgga
      721 agaatggact tcttctggac aattttaaaa ccgaatgatg caatccattt cgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg gagtggaata tggccactgc aacaccaaat gtcaaacccc agtaggagcg
      901 ataaactcta gtatgccgtt ccacaatata catcctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaagtt ggtctttgcg actgggctca gaaatagtcc tctaagagaa
     1021 aagagaagaa aaagagggct gtttggggct atagcaggtt ttatagaggg aggatggcag
     1081 ggaatggttg atggttggta tgggtaccac catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcgatc
     1201 attgacaaaa tgaacactca atttgaggca gttggaaggg agtttaataa cttagaaagg
     1261 aggatagaga atttgaacaa gaaaatggaa gacggattcc tagatgtctg gacctataat
     1321 gctgaacttc tagttctcat ggaaaacgag aggactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt cagactgcag cttagggata atgcaaagga gctgggtaac
     1441 ggttgtttcg aattctatca caaatgtgat aatgaatgta tggaaagtgt gagaaatggg
     1501 acgtatgact accctcagta ttcagaagaa gcaagattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccaa atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat ggtggctggt ctatctttat ggatgtgctc caatgggtcg
     1681 ttacagtgca gaatttgcat ttaaatttgt gagctcagat tgtagttaaa aacacccttg
     1741 tttctact

niman · February 18, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1176517	A/turkey/Israel/1045/2016 (A/H5N8) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1176528	A/great egret/Israel/1084/2016 (A/H5N8) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI1176525	A/great egret/Israel/1088/2016 (A/H5N8) segment 4 (HA)	3120.1	0.000000e+00	1699/1704 (99%)
EPI1176524	A/cormorant/Israel/1035/2016 (A/H5N8) segment 4 (HA)	3120.1	0.000000e+00	1700/1705 (99%)
EPI1019630	A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1019614	A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI1007675	A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI954607	A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI954575	A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA)	3109.0	0.000000e+00	1697/1704 (99%)
EPI869687	A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA)	3105.3	0.000000e+00	1696/1704 (99%)
EPI1045611	A/chicken/Rostov-on-Don/44/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019638	A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019582	A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019550	A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019534	A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019526	A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019518	A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019510	A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI943320	A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI909444	A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1696/1704 (99%)
EPI1019718	A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019678	A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019646	A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019622	A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019606	A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019590	A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019430	A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019406	A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1019398	A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1007667	A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI959413	A/Eurasian Wigeon/Netherlands/4/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI954559	A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI942943	A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI922508	A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI909436	A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI859650	A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1176526	A/turkey/Israel/184/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019766	A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019478	A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1019438	A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI969254	A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI954813	A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI954583	A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909428	A/turkey/Rostov-on-Don/11/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909404	A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909396	A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909388	A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI909380	A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI888088	A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI869940	A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI868848	A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI861011	A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI860509	A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI860401	A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI859653	A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI859212	A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1023562	A/Eurasian_Wigeon/Netherlands/11/2016 (A/H5N8) segment 4 (HA)	3090.6	0.000000e+00	1691/1700 (99%)
EPI1040223	A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA)	3088.7	0.000000e+00	1693/1704 (99%)
EPI909364	A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA)	3088.7	0.000000e+00	1693/1704 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	3088.7	0.000000e+00	1693/1704 (99%)
EPI1019878	A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019870	A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019862	A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019790	A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019782	A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019774	A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019758	A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019750	A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019734	A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019726	A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019710	A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019702	A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019670	A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019558	A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019542	A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019446	A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI1019382	A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI990770	A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI954783	A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI909420	A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI909412	A/chicken/Voronezh/19/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI864746	A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI863865	A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI861568	A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI861224	A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI860519	A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI860393	A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI907346	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1691/1702 (99%)
EPI1040225	A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1032549	A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI1032532	A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)

niman · February 18, 2018

LOCUS       MF166572                1748 bp    cRNA    linear   VRL 01-FEB-2018
DEFINITION  Influenza A virus (A/cormorant/Israel/1035/2016(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   MF166572
VERSION     MF166572.1
KEYWORDS    .
SOURCE      Influenza A virus (A/cormorant/Israel/1035/2016(H5N8))
  ORGANISM  Influenza A virus (A/cormorant/Israel/1035/2016(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N8 isolated in Israel
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2017) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan v. DNASTAR Lasergene 8
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Influenza A virus
                     (A/cormorant/Israel/1035/2016(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/cormorant/Israel/1035/2016"
                     /serotype="H5N8"
                     /host="cormorant"
                     /db_xref="taxon:2005433"
                     /segment="4"
                     /country="Israel"
                     /collection_date="19-Dec-2016"
                     /note="passage details: E1"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ASA45888.1"
                     /translation="MEKIVLLLAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGSLNDYEELKHLLSRINHFEKILIIPKSSWPNHETSLGVSAACPYQGTPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAKEQTNLYKNPTTYISVGT
                     STLNQRLVPKIATRSQVNGQRGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKR
                     DSTIMKSGVEYGHCNTKCQTPVGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLREKRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSNGSLQCRIC
                     I"
     sig_peptide     1..48
                     /gene="HA"
     mat_peptide     49..1035
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1036..1701
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcaata gttagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcgacagag caagttgaca cgataatgga aaagaacgtc
      121 actgttacac atgcccaaga catactggaa aaaacacaca acgggaagct ctgcgatcta
      181 aatggggtga agcctttgat tttaaaggat tgtagtgtag ctggatggct cctcggaaac
      241 ccaatgtgcg acgaattcat cagagtgccg gaatggtctt acatagtgga gagggctaat
      301 ccagctaatg acctctgtta cccagggagc ctcaatgact atgaagaact gaaacacctg
      361 ttgagcagaa taaatcattt tgagaagatt ctgatcatcc ccaagagttc ttggcccaat
      421 catgaaacat cattaggggt aagcgcagct tgtccatacc agggaacgcc ctcctttttc
      481 agaaatgtgg tatggctcat caaaaagaac gatgcatacc caacaataaa gataagctac
      541 aataatacca atcgggaaga tctcttgata ctgtggggaa ttcatcattc caacaatgca
      601 aaagagcaga caaatctcta taaaaaccca accacctata tttcagttgg aacatcaaca
      661 ttaaaccaga gattggtacc aaaaatagct actagatccc aagtaaacgg gcaacgtgga
      721 agaatggact tcttctggac aattttaaaa ccgaatgatg caatccattt cgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaagaggga ctcaacaatt
      841 atgaaaagtg gagtggaata tggccactgc aacaccaaat gtcaaacccc agtaggagcg
      901 ataaactcta gtatgccgtt ccacaatata catcctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaagtt ggtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 aagagaagaa aaagagggct gtttggggct atagcaggtt ttatagaggg aggatggcag
     1081 ggaatggttg atggttggta tgggtaccac catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcgatc
     1201 attgacaaaa tgaacactca atttgaggca gttggaaggg agtttaataa cttagaaagg
     1261 aggatagaga atttgaacaa gaaaatggaa gacggattcc tagatgtctg gacctataat
     1321 gctgaacttc tagttctcat ggaaaacgag aggactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt cagactgcag cttagggata atgcaaagga gctgggtaac
     1441 ggttgtttcg aattctatca caaatgtgat aatgaatgta tggaaagtgt gagaaatggg
     1501 acgtatgact accctcagta ttcagaagaa gcaagattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccaa atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat ggtggctggt ctatctttat ggatgtgctc caatgggtcg
     1681 ttacagtgca gaatttgcat ttaaatttgt gagctcagat tgtagttaaa aacacccttg
     1741 tttctact

niman · February 18, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1176524	A/cormorant/Israel/1035/2016 (A/H5N8) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1176517	A/turkey/Israel/1045/2016 (A/H5N8) segment 4 (HA)	3120.1	0.000000e+00	1700/1705 (99%)
EPI1176528	A/great egret/Israel/1084/2016 (A/H5N8) segment 4 (HA)	3114.6	0.000000e+00	1699/1705 (99%)
EPI1176525	A/great egret/Israel/1088/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1698/1706 (99%)
EPI1019630	A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1697/1705 (99%)
EPI1019614	A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1697/1705 (99%)
EPI1007675	A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1697/1705 (99%)
EPI954607	A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1697/1705 (99%)
EPI954575	A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA)	3103.5	0.000000e+00	1697/1705 (99%)
EPI869687	A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA)	3099.8	0.000000e+00	1696/1705 (99%)
EPI1176526	A/turkey/Israel/184/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1695/1704 (99%)
EPI1045611	A/chicken/Rostov-on-Don/44/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1019638	A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1019582	A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1019550	A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1019534	A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1019526	A/Eur_Wig/NL-Drieborg (Dollard)/16015513-001/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1019518	A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1019510	A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI943320	A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI909444	A/mute swan/Krasnodar/25/2017 (A/H5N8) segment 4 (HA)	3098.0	0.000000e+00	1696/1705 (99%)
EPI1019718	A/M_Swan/NL-Roggebotsluis/16014462-019/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1019678	A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1019646	A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1019622	A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1019606	A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1019590	A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1019430	A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1019406	A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1019398	A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1007667	A/chicken/Belgium/807/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI959413	A/Eurasian Wigeon/Netherlands/4/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI954559	A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI942943	A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI922508	A/chicken/Germany-NI/R11406/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI909436	A/goose/Krasnodar/3144/2017 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI859650	A/wild duck/Germany-BW/R8455/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1695/1705 (99%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019766	A/T_Dk/NL-Almeerder Zand/16014341-003/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019478	A/Dk/NL-Kamperveen/16016104-001-005/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1019438	A/Ch/NL-Zoeterwoude/16016484-021-025/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI969254	A/Tufted Duck/Switzerland/V237/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI954813	A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI954583	A/chicken/Italy/17VIR653-12/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI909428	A/turkey/Rostov-on-Don/11/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI909404	A/chicken/Voronezh/18/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI909396	A/long-eared owl/Voronezh/16/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI909388	A/Ural owl/Voronezh/14/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI909380	A/long-eared owl/Voronezh/15/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI888088	A/wigeon/Italy/17VIR57-3/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI869940	A/herring gull/Poland/84/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI868848	A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI861011	A/turkey/Germany-SH/R8595/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI860509	A/tufted duck/Germany-SH/R8444/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI860401	A/tufted_duck/Germany/AR8459-L01988/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI859653	A/tufted_duck/Germany/AR8444-L01986/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI859212	A/tufted_duck/Germany-SH/R8446/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1694/1705 (99%)
EPI1023562	A/Eurasian_Wigeon/Netherlands/11/2016 (A/H5N8) segment 4 (HA)	3085.0	0.000000e+00	1691/1701 (99%)
EPI1040223	A/chicken/Italy/17VIR3078/2017 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1693/1705 (99%)
EPI909364	A/tufted duck/Denmark/17740-1/2016 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1693/1705 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1693/1705 (99%)
EPI1019878	A/Teal/NL-Ferwert/16015273-013/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019870	A/T_Dk/NL-Zuidoost Beemster/16014148-009/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019862	A/T_Dk/NL-Zuidoost Beemster/16014148-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019790	A/T_Dk/NL-Rotterdam/16014155-001/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019782	A/T_Dk/NL-Roggebotsluis/16014462-015/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019774	A/T_Dk/NL-Monnickendam/16013865-006-008/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019758	A/Sea_eagle/NL-Assen/16015398-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019750	A/P_falcon/NL-Vrouwenpolder (Zeeland)/16015510-001/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019734	A/Mal/NL-IJsselmuiden/16015448-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019726	A/Magpie/NL-Volendam/16014331-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019710	A/L-bl-ba-gull/NL-Sovon/16014324-014/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019702	A/Gull10/NL-Marker Wadden/16014466-014/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019670	A/Gr_bk_bd_gull/NL-Slootdorp/16014102-005/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019558	A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019542	A/Eur_Wig/NL-Ferwert/16015273-002/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019446	A/Crow/NL-Oostwoud/16015372-004/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI1019382	A/Buzzard/NL-Durgerdam/16015100-004/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI990770	A/eurasian wigeon/Germany-NI/AR249-L02143/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI954783	A/Common_tern/Hungary/8187/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI909420	A/chicken/Voronezh/20/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI909412	A/chicken/Voronezh/19/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI864746	A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI863865	A/Common Goldeneye/Sweden/SVA161117KU0322/SZ0002165/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI861568	A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI861224	A/chicken/Germany-SH/R8758/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI860519	A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI860393	A/tufted_duck/Germany/AR8444-L01987/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1693/1705 (99%)
EPI907346	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA)	3077.6	0.000000e+00	1691/1703 (99%)
EPI1040225	A/turkey/Italy/17VIR5878-3/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI1032549	A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI1032532	A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)

niman · February 18, 2018

LOCUS       MF166581                1629 bp    cRNA    linear   VRL 01-FEB-2018
DEFINITION  Influenza A virus (A/grey goose/Israel/986/2016(H5N8)) segment 4
            hemagglutinin (HA) gene, partial cds.
ACCESSION   MF166581
VERSION     MF166581.1
KEYWORDS    .
SOURCE      Influenza A virus (A/grey goose/Israel/986/2016(H5N8))
  ORGANISM  Influenza A virus (A/grey goose/Israel/986/2016(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N8 isolated in Israel
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAY-2017) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan v. DNASTAR Lasergene 8
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Influenza A virus (A/grey
                     goose/Israel/986/2016(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/grey goose/Israel/986/2016"
                     /serotype="H5N8"
                     /host="grey goose"
                     /db_xref="taxon:2005436"
                     /segment="4"
                     /country="Israel"
                     /collection_date="12-Dec-2016"
                     /note="passage details: E1"
     gene            <1..1611
                     /gene="HA"
     CDS             <1..1611
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ASA45897.1"
                     /translation="VDTIMEKNVTVTHAQDILEKTHNGKLCDLNGVKPLILKDCSVAG
                     WLLGNPMCDEFIRVPEWSYIVERANPANDLCYPGSLNDYEELKHLLSRINHFEKILII
                     PKSSWPNHETSLGVSAACPYQGTPSFFRNVVWLIKKNDAYPTIKISYNNTNREDLLIL
                     WGIHHSNNAEEQTNLYKNPTTYISVGTSTLNQRLVPKIATRSQVNGQRGRMDFFWTIL
                     KPNDAIHFESNGNFIAPEYAYKIVKKGDSTIMKSEVEYGHCNTKCQTPVGAINSSMPF
                     HNIHPLTIGECPKYVKSNKLVLATGLRNSPLREKRRKRGLFGAIAGFIEGGWQGMVDG
                     WYGYHHSNEQGSGYAADKESTQKAIDGVTNKVNSIIDKMNTQFEAVGREFNNLERRIE
                     NLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYDKVRLQLRDNAKELGNG
                     CFEFYHKCDNECMESVRNGTYDYPQYSEEARLKREEISGVKLESIGTYQILSIYSTVA
                     SSLALAIMVAGLSLWMCSNGSLQCRICI"
     mat_peptide     <1..942
                     /gene="HA"
                     /product="HA1"
     mat_peptide     943..1608
                     /gene="HA"
                     /product="HA2"
ORIGIN      
        1 gttgacacga taatggaaaa gaacgtcact gttacacatg cccaagacat actggaaaaa
       61 acacacaacg ggaagctctg cgatctaaat ggggtgaaac ctctgatttt aaaggattgt
      121 agtgtagctg gatggctcct cggaaaccca atgtgcgacg aattcatcag agtgccggaa
      181 tggtcttaca tagtggagag ggctaacccc gctaatgacc tctgttaccc agggagcctc
      241 aatgactatg aagaactgaa acacctgttg agcagaataa atcattttga gaagattctg
      301 atcatcccca agagttcttg gcccaatcat gaaacatcat taggggtgag cgcagcttgt
      361 ccataccagg gaacgccctc ctttttcaga aatgtggtat ggcttatcaa aaagaacgat
      421 gcatacccaa caataaagat aagctacaat aataccaatc gggaagatct cttgatactg
      481 tgggggattc atcattccaa caatgcagaa gagcagacaa atctctataa aaacccaacc
      541 acctatattt cggttggaac atcaacatta aaccagagat tggtaccaaa aatagctact
      601 agatcccaag taaacgggca acgtggaaga atggacttct tctggacaat tttaaaaccg
      661 aatgatgcaa tccacttcga gagtaatgga aatttcattg ctccagaata tgcatacaaa
      721 attgtcaaga aaggggactc aacaattatg aaaagtgaag tggaatatgg ccactgcaac
      781 accaaatgtc aaaccccagt aggagcgata aactctagta tgccattcca caatatacat
      841 cctctcacca tcggggaatg ccccaaatac gtgaagtcaa acaagttggt ccttgcgact
      901 gggctcagaa atagtcctct aagagaaaag agaagaaaaa gagggctgtt tggggctata
      961 gcaggtttta tagagggagg atggcaggga atggttgatg gttggtatgg gtaccaccat
     1021 agcaatgagc aggggagtgg gtacgctgca gacaaagaat ccacccaaaa agcaatagat
     1081 ggagttacca ataaggtcaa ctcgatcatt gacaaaatga acactcaatt tgaggcagtt
     1141 ggaagggagt ttaataactt agaaaggagg atagagaatt tgaacaagaa aatggaagac
     1201 ggattcctag atgtctggac ctataatgct gaacttctag ttctcatgga aaacgagagg
     1261 actctagatt tccatgactc aaatgtcaag aacctttacg acaaagtcag actgcagctt
     1321 agggataatg caaaggagct gggtaacggt tgtttcgagt tctatcacaa atgtgataat
     1381 gaatgtatgg aaagtgtgag aaatgggacg tatgactacc ctcagtattc agaagaagca
     1441 agattaaaaa gagaagaaat aagcggagtg aaattagaat caataggaac ttaccaaata
     1501 ctgtcaattt attcaacagt ggcgagttcc ctagcactgg caatcatggt ggctggtcta
     1561 tctttatgga tgtgctccaa tgggtcgtta cagtgcagaa tttgcattta aatttgggag
     1621 ctcagattg

niman · February 18, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1176529	A/grey goose/Israel/986/2016 (A/H5N8) segment 4 (HA)	3009.3	0.000000e+00	1629/1629 (100%)
EPI1176519	A/chicken/Israel/1048/2016 (A/H5N8) segment 4 (HA)	2992.7	0.000000e+00	1626/1629 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	2970.5	0.000000e+00	1622/1629 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	2970.5	0.000000e+00	1622/1629 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	2970.5	0.000000e+00	1622/1629 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	2970.5	0.000000e+00	1622/1629 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	2965.0	0.000000e+00	1621/1629 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	2965.0	0.000000e+00	1621/1629 (99%)
EPI823756	A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA)	2965.0	0.000000e+00	1621/1629 (99%)
EPI823748	A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA)	2965.0	0.000000e+00	1621/1629 (99%)
EPI823460	A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA)	2965.0	0.000000e+00	1621/1629 (99%)
EPI1021106	A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	2959.5	0.000000e+00	1620/1629 (99%)
EPI978865	A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA)	2959.5	0.000000e+00	1620/1629 (99%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	2959.5	0.000000e+00	1620/1629 (99%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	2959.5	0.000000e+00	1620/1629 (99%)
EPI931207	A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA)	2959.5	0.000000e+00	1620/1629 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	2959.5	0.000000e+00	1620/1629 (99%)
EPI869936	A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA)	2959.5	0.000000e+00	1620/1629 (99%)
EPI773757	A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA)	2959.5	0.000000e+00	1621/1630 (99%)
EPI1169147	A/chicken/Rostov-on-Don/1321/2017 (A/H5N8) segment 4 (HA)	2953.9	0.000000e+00	1619/1629 (99%)
EPI1021132	A/goose/Czech Republic/1954-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	2953.9	0.000000e+00	1619/1629 (99%)
EPI964917	A/chicken/Czech Republic/206-17_2/2017 (A/H5N8) segment 4 (HA)	2953.9	0.000000e+00	1619/1629 (99%)
EPI954813	A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA)	2953.9	0.000000e+00	1619/1629 (99%)
EPI907346	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA)	2953.9	0.000000e+00	1619/1629 (99%)
EPI887468	A/chicken/Czech Republic/206-17_2/2017(H5N8) (A/H5N8) segment 4 (HA)	2953.9	0.000000e+00	1619/1629 (99%)
EPI864746	A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA)	2953.9	0.000000e+00	1619/1629 (99%)
EPI861568	A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA)	2953.9	0.000000e+00	1619/1629 (99%)
EPI860519	A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA)	2953.9	0.000000e+00	1619/1629 (99%)
EPI859207	A/domestic_turkey/Hungary/53433/2016 (A/H5N8) segment 4 (HA)	2953.9	0.000000e+00	1619/1629 (99%)
EPI1176527	A/turkey/Israel/1076/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1176526	A/turkey/Israel/184/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1032549	A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1032532	A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1032524	A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1032508	A/Goose/Hungary/17985/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1032492	A/Goose/Hungary/17051/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1032484	A/Goose/Hungary/15729/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1032476	A/Goose/Hungary/17261/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1021135	A/quail/Czech Republic/2063-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1019638	A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1019582	A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1019558	A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1019550	A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1019518	A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI1019510	A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI978863	A/grey heron/Germany-TH/R1125/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI962066	A/Turkey/Hungary/53136/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI962046	A/Duck/Hungary/54738/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI959539	A/Mute swan/Hungary/6276/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI959531	A/Mute swan/Hungary/6092/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI954655	A/Duck/Hungary/984/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI954639	A/Harris Hawk/Hungary/120/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI952782	A/mallard duck/Korea/WA137/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI952639	A/chicken/Korea/H903/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI943320	A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI930838	A/mute swan/Czech Republic/54-17_2/2017 (H5N8) (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI919636	A/chicken/Czech Republic/585-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI891670	A/greylag goose/Croatia/33/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI881901	A/mute swan/Croatia/15/2017 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI869929	A/mute swan/Poland/108/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI868848	A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI866978	A/duck/Hungary/60441/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI861572	A/mute swan/Croatia/78/2016 (A/H5N8) segment 4 (HA)	2948.4	0.000000e+00	1618/1629 (99%)
EPI869924	A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA)	2946.5	0.000000e+00	1614/1624 (99%)
EPI1021086	A/mute swan/Czech Republic/54-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	2944.7	0.000000e+00	1617/1629 (99%)
EPI869926	A/domestic goose/Poland/72/2016 (A/H5N8) segment 4 (HA)	2944.7	0.000000e+00	1617/1629 (99%)
EPI1176530	A/peregrine falcon/Israel/1086/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1169885	A/chicken/Republic of Macedonia/466/2017 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1159809	A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1605/1611 (99%)
EPI1081894	A/turkey/Czech Republic/38-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1032548	A/Goose/Hungary/64909/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1032540	A/Goose/Hungary/63743/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1032516	A/Goose/Hungary/59763/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1032500	A/Goose/Hungary/17580/2017 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1021139	A/mallard/Czech Republic/2641-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1021126	A/mute swan/Czech Republic/1691-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1021125	A/mallard/Czech Republic/1690-17_2/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1021103	A/mallard/Czech Republic/1219-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1021098	A/mute swan/Czech Republic/1155-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1021097	A/mute swan/Czech Republic/1060-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1021088	A/mallard/Czech Republic/136-17_2/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1021087	A/goose/Czech Republic/136-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019678	A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019646	A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019630	A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019622	A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019614	A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019606	A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019590	A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019534	A/Eur_Wig/NL-Enumatil-Groningen/16015704-001/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019430	A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019406	A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1019398	A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI1007675	A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI987882	A/chicken/Republic of Macedonia/AR1167-L02131/2017 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI969265	A/chicken/Czech Republic/2644-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI961484	A/mute swan/Czech Republic/581-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI961475	A/mute swan/Czech Republic/499-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)
EPI959555	A/Pheasant/Hungary/7685/2017 (A/H5N8) segment 4 (HA)	2942.8	0.000000e+00	1617/1629 (99%)

niman · February 18, 2018

LOCUS       MF166575                1717 bp    cRNA    linear   VRL 01-FEB-2018
DEFINITION  Influenza A virus (A/chicken/Israel/881/2016(H5N8)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   MF166575
VERSION     MF166575.1
KEYWORDS    .
SOURCE      Influenza A virus (A/chicken/Israel/881/2016(H5N8))
  ORGANISM  Influenza A virus (A/chicken/Israel/881/2016(H5N8))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1717)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Highly pathogenic avian influenza A virus H5N8 isolated in Israel
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1717)
  AUTHORS   Shkoda,I., Lapin,K., Simanov,L. and Lublin,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (28-MAY-2017) Division of Avian Diseases, Kimron
            Veterinari Institute, P.O.Box 12, Bet Dagan 50250, Israel
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: SeqMan v. DNASTAR Lasergene 8
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717
                     /organism="Influenza A virus
                     (A/chicken/Israel/881/2016(H5N8))"
                     /mol_type="viral cRNA"
                     /strain="A/chicken/Israel/881/2016"
                     /serotype="H5N8"
                     /host="chicken"
                     /db_xref="taxon:2005432"
                     /segment="4"
                     /country="Israel"
                     /collection_date="07-Dec-2016"
                     /note="passage details: E1"
     gene            1..1704
                     /gene="HA"
     CDS             1..1704
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="ASA45891.1"
                     /translation="MEKIVLLLAIVSLVKSDQICIGYHANNSTEQVDTIMEKNVTVTH
                     AQDILEKTHNGKLCDLNGVKPLILKDCSVAGWLLGNPMCDEFIRVPEWSYIVERANPA
                     NDLCYPGSLNDYEELKHLLSRINHFEKILIIPKSSWPNHETSLGVSAACPYQGTPSFF
                     RNVVWLIKKNDAYPTIKISYNNTNREDLLILWGIHHSNNAEEQTNLYKNPTTYISVGT
                     STLNQRLVPKIATRSQVNGQRGRMDFFWTILKPNDAIHFESNGNFIAPEYAYKIVKKG
                     DSTIMKSEVEYGHCNTKCQTPVGAINSSMPFHNIHPLTIGECPKYVKSNKLVLATGLR
                     NSPLREKRRKRGLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDG
                     VTNKVNSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENE
                     RTLDFHDSNVKNLYDKVRLQLRDNAKELGNGCFEFYHKCDNECMESVRNGTYDYPQYS
                     EEARLKREEISGVKLESIGTYQILSIYSTVASSLALAIMVAGLSLWMCSDGSLQCRVC
                     V"
     sig_peptide     1..48
                     /gene="HA"
ORIGIN      
        1 atggagaaaa tagtgcttct tcttgcaata gttagccttg ttaaaagtga tcagatttgc
       61 attggttacc atgcaaacaa ctcgacagag caagttgaca cgataatgga aaagaacgtc
      121 actgttacac atgcccaaga catactggaa aaaacacaca acgggaagct ctgcgatcta
      181 aatggggtga aacctctgat tttaaaggat tgtagtgtag ctggatggct cctcggaaac
      241 ccaatgtgcg acgaattcat cagagtgccg gaatggtctt acatagtgga gagggctaac
      301 ccagctaatg acctctgtta cccagggagc ctcaatgact atgaagaact gaaacacctg
      361 ttgagcagaa taaatcattt tgagaagatt ctgatcatcc ccaagagctc ttggcccaat
      421 catgaaacat cattaggggt gagcgcagct tgtccatacc agggaacgcc ctcctttttc
      481 agaaatgtgg tatggcttat caaaaagaac gatgcatatc caacaataaa gataagctac
      541 aataatacca atcgggaaga tctcttgata ctgtggggga ttcatcattc caacaatgca
      601 gaagagcaga caaatctcta taaaaaccca accacctata tttcagttgg aacatcaaca
      661 ttaaaccaga gattggtacc aaaaatagct actagatccc aagtaaacgg gcaacgtgga
      721 agaatggact tcttctggac aattttaaaa ccgaatgatg caatccattt cgagagtaat
      781 ggaaatttca ttgctccaga atatgcatac aaaattgtca agaaagggga ctcaacaatt
      841 atgaaaagtg aagtggaata tggccactgc aacaccaaat gtcaaacccc agtaggagcg
      901 ataaactcta gtatgccatt ccacaatata catcctctca ccatcgggga atgccccaaa
      961 tacgtgaagt caaacaagtt ggtccttgcg actgggctca gaaatagtcc tctaagagaa
     1021 aagagaagaa aaagagggct gtttggggct atagcaggtt ttatagaggg gggatggcag
     1081 ggaatggttg atggttggta tgggtaccac catagcaatg agcaggggag tgggtacgct
     1141 gcagacaaag aatccaccca aaaggcaata gatggagtta ccaataaggt caactcgatc
     1201 attgacaaaa tgaacactca atttgaggca gttggaaggg agtttaataa cttagaaagg
     1261 aggatagaga atttgaacaa gaaaatggaa gacggattcc tagatgtctg gacctataat
     1321 gctgaacttc tagttctcat ggaaaacgag aggactctag atttccatga ctcaaatgtc
     1381 aagaaccttt acgacaaagt cagactgcag cttagggata atgcaaagga gctgggtaac
     1441 ggttgtttcg agttctatca caaatgtgat aatgaatgta tggaaagtgt gagaaatggg
     1501 acgtatgact accctcagta ttcagaagaa gcaagattaa aaagagaaga aataagcgga
     1561 gtgaaattag aatcaatagg aacttaccaa atactgtcaa tttattcaac agtggcgagt
     1621 tccctagcac tggcaatcat ggtggctggt ctatctttat ggatgtgctc cgatgggtcg
     1681 ttacagtgca gagtttgcgt ttaaatttgt gagatca

niman · February 18, 2018

Descriptions

Segment-ID	Name	Score	E-Value	Identity
EPI1176518	A/chicken/Israel/881/2016 (A/H5N8) segment 4 (HA)	3147.8	0.000000e+00	1704/1704 (100%)
EPI1159825	A/Cygnus atratus/Hubei/HF-1/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI1159809	A/Anser cygnoides/Hubei/FW44/2016 (A/H5N8) segment 4 (HA)	3092.4	0.000000e+00	1694/1704 (99%)
EPI990794	A/greylag goose/Germany-NI/AR1395-L02144/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI969347	A/turkey/Germany-BB/R377ff/2017 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI869931	A/turkey/Poland/83/2016 (A/H5N8) segment 4 (HA)	3086.9	0.000000e+00	1693/1704 (99%)
EPI869930	A/turkey/Poland/78/2016 (A/H5N8) segment 4 (HA)	3083.2	0.000000e+00	1692/1704 (99%)
EPI1159817	A/Cygnus atratus/Hubei/2Z2-O/2016 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI990802	A/greylag goose/Germany-NI/AR703-L02138/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI954877	A/Mallard/Hungary/1574a/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI954861	A/Mallard/Hungary/1574b/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI954559	A/swan/Italy/17VIR537-2/2017 (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI916604	A/bronze turkey/Czech Republic/1414-17/2017 (H5N8) (A/H5N8) segment 4 (HA)	3081.3	0.000000e+00	1692/1704 (99%)
EPI907346	A/domestic duck/Germany-BB/R681ff/2017 (A/H5N8) segment 4 (HA)	3077.6	0.000000e+00	1690/1702 (99%)
EPI1176526	A/turkey/Israel/184/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1169201	A/chicken/Rostov-on-Don/1598/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1021106	A/mute swan/Czech Republic/1296-17_1/2017 (H5N8) (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1019638	A/Eur_Wig/NL-Zoeterwoude/16015702-010/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1019582	A/Eur_Wig/NL-Leidschendam/16015697-007/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1019550	A/Eur_Wig/NL-Gouda/16015824-001/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1019518	A/Eur_Wig/NL-De Waal (Texel)/16014891-004/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1019510	A/Eur_Wig/NL-De Waal (Texel)/16014891-003/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1006681	A/common teal/Korea/W549/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI1006680	A/common teal/Korea/W547/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI954813	A/Greylag_goose/Hungary/320/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI943320	A/pochard_duck/England/SA12_157809/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI931207	A/turkey/Germany-BB/R234ff/2017 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI909452	A/wild duck/Tatarstan/3059/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI869936	A/chicken/Kalmykia/2661/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI868848	A/turkey/England/052131/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI858836	A/duck/India/10CA01/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI836614	A/common tern /Uvs-Nuur Lake/26/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI836606	A/grey heron /Uvs-Nuur Lake/20/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI823756	A/black-headed gull/Tyva/41/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI823748	A/wild duck/Tyva/35/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI823460	A/great crested grebe/Tyva/34/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774394	A/Bar-headed Goose/Qinghai/BTY17-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774386	A/Bar-headed Goose/Qinghai/BTY17-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774310	A/Bar-headed Goose/Qinghai/BTY12-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774242	A/Bar-headed Goose/Qinghai/BTY8-LU/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774234	A/Bar-headed Goose/Qinghai/BTY8-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774121	A/Bar-headed Goose/Qinghai/BTY1-LV/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI774113	A/Bar-headed Goose/Qinghai/BTY1-B/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1691/1704 (99%)
EPI773757	A/great crested grebe/Uvs-Nuur Lake/341/2016 (A/H5N8) segment 4 (HA)	3075.8	0.000000e+00	1692/1705 (99%)
EPI1176519	A/chicken/Israel/1048/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1169147	A/chicken/Rostov-on-Don/1321/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1691/1705 (99%)
EPI1019678	A/Grey_Go/NL-Groot-Ammers/16015901-012/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019646	A/Eur_Wig/NL-Zwolle/16015820-002/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019630	A/Eur_Wig/NL-Wormer/16016143-002/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019622	A/Eur_Wig/NL-West Graftdijk/16015746-003/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019614	A/Eur_Wig/NL-Walterswald/16015923-003/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019606	A/Eur_Wig/NL-Vianen/16015917-006/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019590	A/Eur_Wig/NL-Reeuwijk/16015903-003/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019558	A/Eur_Wig/NL-Greonterp/16015653-001/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019430	A/Ch/NL-Rhenen/16016141-006/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019406	A/Ch/NL-Boven Leeuwen/16016151-006-010/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1019398	A/Ch/NL-Abbega/X16015736/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1007675	A/peacock/Belgium/1017/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1006705	A/common teal/Korea/W555/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1006704	A/common teal/Korea/W550/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI1006703	A/common teal/Korea/W548/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI959413	A/Eurasian Wigeon/Netherlands/4/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI954607	A/turkey/Italy/17VIR1452-22/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI954575	A/turkey/Italy/17VIR576-11/2017 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI942943	A/chicken/Wales/000023/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI864746	A/mute swan/Croatia/85/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI861568	A/mute swan/Croatia/70/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI860519	A/goose/Hungary/55128/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774475	A/Brown-headed Gull/Qinghai/ZTO5-K/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774458	A/Brown-headed Gull/Qinghai/ZTO4-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774450	A/Brown-headed Gull/Qinghai/ZTO3-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774402	A/Bar-headed Goose/Qinghai/BTY18-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774378	A/Bar-headed Goose/Qinghai/BTY16-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774326	A/Bar-headed Goose/Qinghai/BTY13-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774318	A/Bar-headed Goose/Qinghai/BTY13-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774302	A/Bar-headed Goose/Qinghai/BTY12-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774277	A/Bar-headed Goose/Qinghai/BTY10-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774267	A/Bar-headed Goose/Qinghai/BTY10-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774259	A/Bar-headed Goose/Qinghai/BTY9-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774251	A/Bar-headed Goose/Qinghai/BTY9-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774226	A/Bar-headed Goose/Qinghai/BTY7-LU2/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774218	A/Bar-headed Goose/Qinghai/BTY7-LU1/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774210	A/Bar-headed Goose/Qinghai/BTY7-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774201	A/Bar-headed Goose/Qinghai/BTY6-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774193	A/Bar-headed Goose/Qinghai/BTY6-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774185	A/Bar-headed Goose/Qinghai/BTY5-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774176	A/Bar-headed Goose/Qinghai/BTY4-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774168	A/Bar-headed Goose/Qinghai/BTY4-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774159	A/Bar-headed Goose/Qinghai/BTY3-LU/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI774150	A/Bar-headed Goose/Qinghai/BTY3-B/2016 (A/H5N8) segment 4 (HA)	3070.3	0.000000e+00	1690/1704 (99%)
EPI978865	A/mute swan/Germany-TH/R1126/2017 (A/H5N8) segment 4 (HA)	3068.4	0.000000e+00	1689/1704 (99%)
EPI869924	A/domestic goose/Poland/33/2016 (A/H5N8) segment 4 (HA)	3066.6	0.000000e+00	1689/1704 (99%)
EPI869687	A/decoy_duck/France/161104e/2016 (A/H5N8) segment 4 (HA)	3066.6	0.000000e+00	1689/1704 (99%)
EPI1176527	A/turkey/Israel/1076/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1045611	A/chicken/Rostov-on-Don/44/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032549	A/Mulard_duck/Hungary/59163/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032532	A/Mulard_duck/Hungary/62902/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032524	A/Mulard_duck/Hungary/60369/2016 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032508	A/Goose/Hungary/17985/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)
EPI1032492	A/Goose/Hungary/17051/2017 (A/H5N8) segment 4 (HA)	3064.7	0.000000e+00	1689/1704 (99%)

2016/2017 Israel H5N8 Wild Bird and Poultry Sequences Match Asia

Recommended Posts

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Link to comment

Share on other sites

Please sign in to comment

Recently Browsing 0 members