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Partial Zika Sequence Ganxian Jiangxi ex-Venezuela


niman

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LOCUS       KU740199                1813 bp    RNA     linear   VRL 22-FEB-2016
DEFINITION  Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds.
ACCESSION   KU740199
VERSION     KU740199.1  GI:998963116
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 1813)
  AUTHORS   Wu,W., Zhao,X., Liu,L., Li,J., Qu,J., Zhang,S., Li,W., Liang,M. and
            Li,D.
  TITLE     First imported case of Zika virus infection in China mainland,
            February 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1813)
  AUTHORS   Wu,W., Zhao,X., Liu,L., Li,J., Qu,J., Zhang,S., Li,W., Liang,M. and
            Li,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-FEB-2016) Department of Viral Hemorrhagic Fever,
            National Institute for Viral Diseases Control and Prevention,
            Changbai Road 155, Beijing, Beijing 102206, China
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: CLC Genomics Workbench v. 8.5.1
            Sequencing Technology :: IonTorrent
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1813
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="VE_Ganxian2016"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="China"
                     /collection_date="07-Feb-2016"
                     /note="type: Asian"
     CDS             <1..>1813
                     /note="contains nonstructural proteins"
                     /codon_start=3
                     /product="polyprotein"
                     /protein_id="AMK79467.1"
                     /db_xref="GI:998963117"
                     /translation="VLASCLLQTAISALEGDLMVLINGFALAWLAVRAMVVPRTDNIT
                     LAILAALTPLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLV
                     DPINVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVS
                     YVVSGKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEDDGPPMREIIL
                     KVVLMTICGMNPIAIPFAAGAWYVYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMT
                     RRLLGSTQVGVGVMQEGVFHTMWHVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKL
                     DAAWDGHSEVQLLAVPPGERARNIQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKC
                     GRVIGLYGNGVVIKNGSYVSAITQGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKT
                     RRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVD
                     LMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTA
                     TPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTE"
     mat_peptide     <1..368
                     /product="NS2A"
     mat_peptide     369..800
                     /product="NS2B"
     mat_peptide     801..1811
                     /product="NS3"
ORIGIN      
        1 tggtcttggc ctcgtgtctt ttgcaaactg cgatctccgc cttggaaggc gacctgatgg
       61 ttctcatcaa tggttttgct ttggcctggt tggcagtacg agcgatggtt gttccacgca
      121 ctgataacat caccttagca atcctggctg ctctgacacc actggcccgg ggcacactgc
      181 ttgtggcgtg gagagcaggc cttgctactt gcggggggtt tatgctcctc tctctgaagg
      241 gaaaaggcag tgtgaagaag aacttaccat ttgtcatggc cctgggacta accgctgtga
      301 ggctggtcga ccccatcaac gtggtgggac tgctgttgct cacaaggagt gggaagcgga
      361 gctggccccc tagcgaagta ctcacagctg ttggcctgat atgcgcattg gctggagggt
      421 tcgccaaggc agatatagag atggctgggc ccatggccgc ggtcggtctg ctaattgtca
      481 gttacgtggt ctcaggaaag agtgtggaca tgtacattga aagagcaggt gacatcacat
      541 gggaaaaaga tgcggaagtc actggaaaca gtccccggct cgatgtggcg ctagatgaga
      601 gtggtgattt ctccctggtg gaggatgacg gtccccccat gagagagatc atactcaagg
      661 tggtcctgat gaccatctgt ggcatgaacc caatagccat accctttgca gctggagcgt
      721 ggtacgtata cgtgaagact ggaaaaagga gtggtgctct atgggatgtg cctgctccca
      781 aggaagtaaa aaagggggag accacagatg gagtgtacag agtaatgact cgcagactgc
      841 taggttcaac acaagttgga gtgggagtta tgcaagaggg ggtctttcac actatgtggc
      901 acgtcacaaa aggatccgcg ctgagaagcg gtgaagggag acttgatcca tactggggag
      961 atgtcaagca ggatctggtg tcatactgtg gtccatggaa gctagatgcc gcctgggacg
     1021 ggcacagcga ggtgcagctc ttggccgtgc cccccggaga gagagcgagg aacatccaga
     1081 ctctgcccgg aatatttaag acaaaggatg gggacattgg agcggttgca ctggattacc
     1141 cagcaggaac ttcaggatct ccaatcctag acaagtgtgg gagagtgata ggactttatg
     1201 gcaatggggt cgtgatcaaa aatgggagtt atgttagtgc catcacccaa gggaggaggg
     1261 aggaagagac tcctgttgag tgcttcgagc cttcgatgct gaagaagaag cagctaactg
     1321 tcttagactt gcatcctgga gctgggaaaa ccaggagagt tcttcctgaa atagtccgtg
     1381 aagccataaa aacaagactc cgtactgtga tcttggctcc aaccagggtt gtcgctgctg
     1441 aaatggagga ggcccttaga gggcttccag tgcgttatat gacaacagca gtcaatgtca
     1501 cccactctgg aacagaaatc gtcgacttaa tgtgccatgc caccttcact tcacgtctac
     1561 tacagccaat tagagtcccc aactataatc tgtatattat ggatgaggcc cacttcacag
     1621 atccctcaag tatagcagca agaggataca tttcaacaag ggttgagatg ggcgaggcgg
     1681 ctgccatctt catgaccgcc acgccaccag gaacccgtga cgcatttccg gactccaact
     1741 caccaattat ggacaccgaa gtggaagtcc cagagagagc ctggagctca ggctttgatt
     1801 gggtgacaga gta
//
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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
3229322999%0.099%KU365779.1
3223322399%0.099%KJ776791.1
32203220100%0.099%KU509998.1
3220322099%0.099%KU501217.1
3220322099%0.099%KU501216.1
3220322099%0.099%KU365780.1
3220322099%0.099%KU365777.1
32203220100%0.099%KU321639.1
3214321499%0.099%KU501215.1
3214321499%0.099%KU312312.1
3211321199%0.099%KU365778.1
3205320599%0.099%KU647676.1
3124312499%0.098%KF993678.1
3094309499%0.098%JN860885.1
2998299899%0.097%EU545988.1
2895289599%0.095%HQ234499.1
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Chinese scientists isolate two Zika virus strains from patients
 
Source: Xinhua   2016-02-25 15:41:59fanxiang13.gif fanxiang12.gif bigphoto_tit6_b.gif t+.gift-.gif
 
 
 

BEIJING, Feb. 25 (Xinhua) -- Chinese scientists have isolated two Zika virus strains, which will assist research into a possible vaccination and the transmission pattern of the virus.

The two strains were isolated from blood and urine samples from two patients. The urine test was the first successful isolation from a sample such as that, according to the Academy of Military Medical Sciences and Guangzhou No. 8 People's Hospital.

With five confirmed imported Zika virus cases and the weather beginning to warm up across the country, China is on high alert.

The isolation can help scientists study the transmission pattern of the virus while provide a foundation for the invention of reagent and vaccine.

Chinese scientists announced Monday they had decoded the gene sequence of the first imported Zika virus.

http://news.xinhuanet.com/english/2016-02/25/c_135130588.htm

 

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