niman Posted March 1, 2016 Report Share Posted March 1, 2016 (edited) Evandro Chagas Institute has released a full Zika sequence, BeH823339, at Genbank. http://www.ncbi.nlm.nih.gov/nuccore/KU729217This sequence matches a sequence, ZikV|NA|BeH823343|Brazil_Ceara_microcephaly|18-11-2015 cited as from a microcephaly case in Ceara as described here http://virological.org/t/zika-virus-in-the-americas-early-epidemiological-and-genetic-findings/220 Edited March 1, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted March 1, 2016 Author Report Share Posted March 1, 2016 LOCUS KU729217 10624 bp RNA linear VRL 26-FEB-2016 DEFINITION Zika virus isolate BeH823339 polyprotein gene, complete cds. ACCESSION KU729217 VERSION KU729217.1 GI:998491030 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10624) AUTHORS Faria,N.R., Azevedo,R.S.S., Kraemer,M.U.G., Souza,R., Cunha,M.S., Hill,S.C., Theze,J., Bonsall,M.B., Bodeng,T.A., Rissanen,I., Rocco,I.M., Nogueira,J.S., Maeda,A.Y., Vasami,F.G.S., Macedo,F.L.L., Suzuki,A., Rodrigues,S.G., Cruz,A.C.R., Diniz,B.T., Medeiros,D.B.A., Silva,E.V.P., Henriques,D.F., Travassos da Rosa,E.S., Oliveira,C.S., Martins,L.C., Vasconcelos,H.B., Casseb,L.M.N., Simith,D.B., Messina,J., Abade,L., Lourenco,J., Alcantara,L.C., Lima,M., Giovanetti,M., Hay,S.I., Oliveira,R.S., Lemos,P.S., Oliveira,L.F., Lima,C.P.S., Silva,S.P., Vasconcelos,J.M., Cardoso,J.F., Vianez-Junior,J.L.S.G., Mir,D., Bello,G., Delatorre,E., Khan,K., Creatore,M., Coelho,G.E., Oliveira,W.K., Tesh,R., Pybus,O.G., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Zika virus in the Americas: early epidemiological and genetic findings JOURNAL Unpublished REFERENCE 2 (bases 1 to 10624) AUTHORS Nunes,M.R.T., Azevedo,R.S.S., Silva,S.P., Vasconcelos,J.M., Cardoso,J.F., Lemos,P.S., Lima,C.P.S., Oliveira,R.S., Faria,N.R., Vianez-Junior,J.L.S.G., Medeiros,D.B.A., Rodrigues,S.G., Diniz,B.T., Silva,E.V.P., Cruz,A.C.R. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (18-FEB-2016) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67030-000, Brazil COMMENT EMAIL: [email protected] ##Assembly-Data-START## Assembly method: Mira 4.0 and Geneious 7.0 Sequencing Technology: Ion and 454 ##Assembly-Data-END##. FEATURES Location/Qualifiers source 1..10624 /organism="Zika virus" /mol_type="genomic RNA" /isolate="BeH823339" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="2015" Link to comment Share on other sites More sharing options...
niman Posted March 1, 2016 Author Report Share Posted March 1, 2016 LOCUS KU729217 10624 bp RNA linear VRL 26-FEB-2016 DEFINITION Zika virus isolate BeH823339 polyprotein gene, complete cds. ACCESSION KU729217 VERSION KU729217.1 GI:998491030 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10624) AUTHORS Faria,N.R., Azevedo,R.S.S., Kraemer,M.U.G., Souza,R., Cunha,M.S., Hill,S.C., Theze,J., Bonsall,M.B., Bodeng,T.A., Rissanen,I., Rocco,I.M., Nogueira,J.S., Maeda,A.Y., Vasami,F.G.S., Macedo,F.L.L., Suzuki,A., Rodrigues,S.G., Cruz,A.C.R., Diniz,B.T., Medeiros,D.B.A., Silva,E.V.P., Henriques,D.F., Travassos da Rosa,E.S., Oliveira,C.S., Martins,L.C., Vasconcelos,H.B., Casseb,L.M.N., Simith,D.B., Messina,J., Abade,L., Lourenco,J., Alcantara,L.C., Lima,M., Giovanetti,M., Hay,S.I., Oliveira,R.S., Lemos,P.S., Oliveira,L.F., Lima,C.P.S., Silva,S.P., Vasconcelos,J.M., Cardoso,J.F., Vianez-Junior,J.L.S.G., Mir,D., Bello,G., Delatorre,E., Khan,K., Creatore,M., Coelho,G.E., Oliveira,W.K., Tesh,R., Pybus,O.G., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Zika virus in the Americas: early epidemiological and genetic findings JOURNAL Unpublished REFERENCE 2 (bases 1 to 10624) AUTHORS Nunes,M.R.T., Azevedo,R.S.S., Silva,S.P., Vasconcelos,J.M., Cardoso,J.F., Lemos,P.S., Lima,C.P.S., Oliveira,R.S., Faria,N.R., Vianez-Junior,J.L.S.G., Medeiros,D.B.A., Rodrigues,S.G., Diniz,B.T., Silva,E.V.P., Cruz,A.C.R. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (18-FEB-2016) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67030-000, Brazil COMMENT EMAIL: [email protected] ##Assembly-Data-START## Assembly method: Mira 4.0 and Geneious 7.0 Sequencing Technology: Ion and 454 ##Assembly-Data-END##. FEATURES Location/Qualifiers source 1..10624 /organism="Zika virus" /mol_type="genomic RNA" /isolate="BeH823339" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="2015" CDS 75..10346 /codon_start=1 /product="polyprotein" /protein_id="AMK49164.1" /db_xref="GI:998491031" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVSTTVSNMAEVRSYCYEATISDIASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTAVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKEKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPIAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVXXXXXXXXXXXXXXXXX XXXXXXIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGDRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXLGEEGSTPGVL" gap 9708..10310 /estimated_length=603 ORIGIN 1 gacagttcga gtttgaagcg aaagctagca acagtatcaa caggtttatt tggattgaaa 61 cgagagttct ggtcatgaaa aacccaaaaa agaaatccgg aggattccgg attgtcaata 121 tgctaaaacg cggagtagcc cgtgtgagcc cttttggggg cttgaagagg ctgccagccg 181 gacttctgct gggtcatggg cccatcagga tggtcttggc gattctagcc tttttgagat 241 tcacggcaat caagccatca ctgggtctca tcaatagatg gggttcagtg gggaaaaaag 301 aggctatgga aataataaag aagttcaaga aagatctggc tgccatgctg agaataatca 361 atgctaggaa ggagaagaag agacgaggcg cagatactag tgtcggaatt gttggcctcc 421 tgctgaccac agctatggca gcggaggtca ctagacgtgg gagtgcatac tatatgtact 481 tggacagaaa cgatgctggg gaggccatat cttttccaac cacattgggg atgaataagt 541 gttatataca gatcatggat cttggacaca tgtgtgatgc caccatgagc tatgaatgcc 601 ctatgctgga tgagggggtg gaaccagatg acgtcgattg ttggtgcaac acgacgtcaa 661 cttgggttgt gtacggaacc tgccatcaca aaaaaggtga agcacggaga tctagaagag 721 ctgtgacgct cccctcccat tccactagga agctgcaaac gcggtcgcaa acctggttgg 781 aatcaagaga atacacaaag cacttgatta gagtcgaaaa ttggatattc aggaaccctg 841 gcttcgcgtt agcagcagct gccatcgctt ggcttttggg aagctcaacg agccaaaaag 901 tcatatactt ggtcatgata ctgctgattg ccccggcata cagcatcagg tgcataggag 961 tcagcaatag ggactttgtg gaaggtatgt caggtgggac ttgggttgat gttgtcttgg 1021 aacatggagg ttgtgtcacc gtaatggcac aggacaaacc gactgtcgac atagagctgg 1081 tttcaacaac agtcagcaac atggcggagg taagatccta ctgctatgag gcaacaatat 1141 cagacatagc ttcggacagc cgctgcccaa cacaaggtga agcctacctt gacaagcaat 1201 cagacactca atatgtctgc aaaagaacgt tagtggacag aggctgggga aatggatgtg 1261 gactttttgg caaagggagc ctggtgacat gcgctaagtt tgcatgctcc aagaaaatga 1321 ccgggaagag catccagcca gagaatctgg agtaccggat aatgctgtca gttcatggct 1381 cccagcacag tgggatgatc gttaatgaca caggacatga aactgatgag aatagagcga 1441 aggttgagat aacgcccaat tcaccaagag ccgaagccac cctggggggt tttggaagcc 1501 taggacttga ttgtgaaccg aggacaggcc ttgacttttc agatttgtat tacttgacta 1561 tgaataacaa gcactggttg gttcacaagg agtggttcca cgacattcca ttaccttggc 1621 acgctggggc agacaccgga actccacact ggaacaacaa agaagcactg gtagagttca 1681 aggacgcaca tgccaaaagg caaactgccg tggttctagg gagtcaagaa ggagcagttc 1741 acacggccct tgctggagct ctggaggctg agatggatgg tgcaaaggga aggctgtcct 1801 ctggccactt gaaatgtcgc ctgaaaatgg ataaacttag attgaagggc gtgtcatact 1861 ccttgtgtac cgcagcgttc acattcacca agatcccggc tgaaacactg cacgggacag 1921 tcacagtgga ggtacagtac gcagggacag atggaccttg caaggttcca gctcagatgg 1981 cggtggacat gcaaactctg accccagttg ggaggttgat aaccgctaac cccgtaatca 2041 ctgaaagcac tgagaactct aagatgatgc tggaacttga tccaccattt ggggactctt 2101 acattgtcat aggagtcggg gagaagaaga tcacccacca ctggcacagg agtggcagca 2161 ccattggaaa agcatttgaa gccactgtga gaggtgccaa gagaatggca gtcttgggag 2221 acacagcctg ggactttgga tcagttggag gcgctctcaa ctcattgggc aagggcatcc 2281 atcaaatttt tggagcagct ttcaaatcat tgtttggagg aatgtcctgg ttctcacaaa 2341 tcctcattgg aacgttgctg atgtggttgg gtctgaacac aaagaatgga tctatttccc 2401 ttatgtgctt ggccttaggg ggagtgttga tcttcttatc cacagccgtc tctgctgatg 2461 tggggtgctc ggtggacttc tcaaagaagg agacgagatg cggtacaggg gtgttcgtct 2521 ataacgacgt tgaagcctgg agggacaggt acaagtacca tcctgactcc ccccgtagat 2581 tggcagcagc agtcaagcaa gcctgggaag atggtatctg cgggatctcc tctgtttcaa 2641 gaatggaaaa catcatgtgg agatcagtag aaggggagct caatgcaatc ctggaagaga 2701 atggagttca actgacggtc gttgtgggat ctgtgaaaaa ccccatgtgg agaggtccac 2761 agagattgcc cgtgcctgtg aacgagctgc cccacggctg gaaggcttgg gggaaatcgt 2821 acttcgtcag agcagcaaag acaaataaca gctttgtcgt ggatggtgac acactgaagg 2881 aatgcccact caaacataga gcatggaaca gctttcttgt ggaggatcat gggttcgggg 2941 tatttcacac tagtgtctgg ctcaaggtta gagaagatta ttcattagag tgtgatccag 3001 ccgttattgg aacagctgtt aaggaaaagg aggctgtaca cagtgatcta ggctactgga 3061 ttgagagtga gaagaatgac acatggaggc tgaagagggc ccatctgatc gagatgaaaa 3121 catgtgaatg gccaaagtcc cacacattgt ggacagatgg aatagaagag agtgatctga 3181 tcatacccaa gtctttagct gggccactca gccatcacaa taccagagag ggctacagga 3241 cccaaatgaa agggccatgg cacagtgaag agcttgaaat tcggtttgag gaatgcccag 3301 gcactaaggt ccacgtggag gaaacatgtg gaacaagagg accatctctg agatcaacca 3361 ctgcaagcgg aagggtgatc gaggaatggt gctgcaggga gtgcacaatg cccccactgt 3421 cgttccgggc taaagatggc tgttggtatg gaatggagat aagacccagg aaagaaccag 3481 aaagcaactt agtaaggtca gtggtgactg caggatcaac tgatcacatg gatcacttct 3541 cccttggagt gcttgtgatt ctgctcatgg tgcaggaagg gctgaagaag agaatgacca 3601 caaagatcat cataagcaca tcaatggcag tgctggtagc tatgatcctg ggaggatttt 3661 caatgagtga cctggctaag cttgcaattt tgatgggtgc caccttcgcg gaaatgaaca 3721 ctggaggaga tgtagctcat ctggcgctga tagcggcatt caaagtcaga ccagcgttgc 3781 tggtatcttt catcttcaga gctaattgga caccccgtga aagcatgctg ctggccttgg 3841 cctcgtgtct tttgcaaact gcgatctccg ccttggaagg cgacctgatg gttctcatca 3901 atggttttgc tttggcctgg ttggcaatac gagcgatggt tgttccacgc actgataaca 3961 tcaccttggc aatcctggct gctctgacac cactggcccg gggcacactg cttgtggcgt 4021 ggagagcagg ccttgctact tgcggggggt ttatgctcct ctctctgaag ggaaaaggca 4081 gtgtgaagaa gaacttacca tttgtcatgg ccctgggact aaccgctgtg aggctggtcg 4141 accccatcaa cgtggtggga ctgctgttgc tcacaaggag tgggaagcgg agctggcccc 4201 ctagcgaagt actcacagct gttggcctga tatgcgcatt ggctggaggg ttcgccaagg 4261 cagatataga gatggctggg cccatagccg cggtcggtct gctaattgtc agttacgtgg 4321 tctcaggaaa gagtgtggac atgtacattg aaagagcagg tgacatcaca tgggaaaaag 4381 atgcggaagt cactggaaac agtccccggc tcgatgtggc gctagatgag agtggtgatt 4441 tctccctggt ggaggatgac ggtcccccca tgagagagat catactcaag gtggtcctga 4501 tgaccatctg tggcatgaac ccaatagcca taccctttgc agctggagcg tggtacgtat 4561 acgtgaagac tggaaaaagg agtggtgctc tatgggatgt gcctgctccc aaggaagtaa 4621 aaaaggggga gaccacagat ggagtgtaca gagtaatgac tcgtagactg ctaggttcaa 4681 cacaagttgg agtgggagtt atgcaagagg gggtctttca cactatgtgg cacgtcacaa 4741 aaggatccgc gctgagaagc ggtgaaggga gacttgatcc atactgggga gatgtcaagc 4801 aggatctggt gtcatactgt ggtccatgga agctagatgc cgcctgggac gggcacagcg 4861 aggtgcagct cttggccgtg ccccccggag agagagcgag gaacatccag actctgcccg 4921 gaatatttaa gacaaaggat ggggacattg gagcggttgc gctggattac ccagcaggaa 4981 cttcaggatc tccaatccta gacaagtgtg ggagagtgat aggactttat ggcaatgggg 5041 tcgtgatcaa aaatgggagt tatgttagtg ccatcaccca agggaggagg gaggaagaga 5101 ctcctgttga gtgcttcgag ccttcgatgc tgaagaagaa gcagctaact gtcttagact 5161 tgcatcctgg agctgggaaa accaggagag ttcttcctga aatagtccgt gaagccataa 5221 aaacaagact ccgtactgtg atcttagctc caaccagggt tgtcgctgct gaaatggagg 5281 aagcccttag agggcttcca gtgcgttata tgacaacagc agtcaatgtc acccactctg 5341 gaacagaaat cgtcgactta atgtgccatg ccaccttcac ttcacgccta ctacagccaa 5401 tcagagtccc caactataat ctgtatatta tggatgaggc ccacttcaca gatccctcaa 5461 gtatagcagc aagaggatac atttcaacaa gggttgagat gggcgaggcg gctgccatct 5521 tcatgaccgc cacgccacca ggaacccgtg acgcatttcc ggactccaac tcaccaatta 5581 tggacaccga agtggaagtc ccagagagag cctggagctc aggctttgat tgggtgacgg 5641 atcattctgg aaaaacagtt tggtttgttc caagcgtgag gaacggcaat gagatcgcag 5701 cttgtctgac aaaggctgga aaacgggtca tacagctcag cagaaagact tttgagacag 5761 agttccagaa aacaaaacat caagagtggg actttgtcgt gacaactgac atttcagaga 5821 tgggcgccaa ctttaaagct gaccgtgtca tagattccag gagatgccta aagccggtca 5881 tacttgatgg cgagagagtc attctggctg gacccatgcc tgtcacacat gccagcgctg 5941 cccagaggag ggggcgcata ggcaggaatc ccaacaaacc tggagatgag tatctgtatg 6001 gaggtgggtg cgcagagact gacgaagacc atgcacactg gcttgaagca agaatgctcc 6061 ttgacaatat ttacctccaa gatggcctca tagcctcgct ctatcgacct gaggccgaca 6121 aagtagcagc cattgaggga gagttcaagc ttaggacgga gcaaaggaag acctttgtgg 6181 aactcatgaa aagaggagat cttcctgttt ggctggccta tcaggttgca tctgccggaa 6241 taacctacac agatagaaga tggtgctttg atggcacgac caacaacacc ataatggaag 6301 acagtgtgcc ggcagaggtg tggaccagac acggagagaa aagagtgctc aaaccgaggt 6361 ggatggacgc cagagtttgt tcagatcatg cggccctgaa gtcattcaag gagtttgccg 6421 ctgggaaaag aggagcggct tttggagtga tggaagccct gggaacactg ccaggacaca 6481 tgacagagag attccaggaa gccattgaca acctcgctgt gctcatgcgg gcagagactg 6541 gaagcaggcc ttacaaagcc gcggcggccc aattgccgga gaccctagag accattatgc 6601 ttttggggtt gctgggaaca gtctcgctgg gaatcttttt cgtcttgatg aggaacaagg 6661 gcatagggaa gatgggcttt ggaatggtga ctcttggggc cagcgcatgg ctcatgtggc 6721 tctcggaaat tgagccagcc agaattgcat gtgtcctcat tgttgtgnnn nnnnnnnnnn 6781 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnatca 6841 tcatcatggt agcagtaggt cttctgggct tgattaccgc caatgaactc ggatggttgg 6901 agagaacaaa gagtgaccta agccatctaa tgggaaggag agaggaggga gcaaccatag 6961 gattctcaat ggacattgac ctgcggccag cctcagcttg ggccatctat gctgccttga 7021 caactttcat taccccagcc gtccaacatg cagtgaccac ttcatacaac aactactcct 7081 taatggcgat ggccacgcaa gctggagtgt tgtttggtat gggcaaaggg atgccattct 7141 acgcatggga ctttggagtc ccgctgctaa tgataggttg ctactcacaa ttaacacccc 7201 tgaccctaat agtggccatc attttgctcg tggcgcacta catgtacttg atcccagggc 7261 tgcaggcagc agctgcgcgt gctgcccaga agagaacggc agctggcatc atgaagaacc 7321 ctgttgtgga tggaatagtg gtgactgaca ttgacacaat gacaattgac ccccaagtgg 7381 agaaaaagat gggacaggtg ctactcatag cagtagccgt ctccagcgcc atactgtcgc 7441 ggaccgcctg ggggtggggg gaggctgggg ccctgattac agccgcaact tccactttgt 7501 gggaaggctc tccgaacaag tactggaact cctctacagc cacttcactg tgtaacattt 7561 ttaggggaag ttacttggct ggagcttctc taatctacac agtaacaaga aacgctggct 7621 tggtcaagag acgtgggggt ggaacaggag agaccctggg agagaaatgg aaggcccgct 7681 tgaaccagat gtcggccctg gagttctact cctacaaaaa gtcaggcatc accgaggtgt 7741 gcagagaaga ggcccgccgc gccctcaagg acggtgtggc aacgggaggc catgctgtgt 7801 cccgaggaag tgcaaagctg agatggttgg tggagcgggg atacctgcag ccctatggaa 7861 aggtcattga tcttggatgt ggcagagggg gctggagtta ctacgccgcc accatccgca 7921 aagttcaaga agtgaaagga tacacaaaag gaggccctgg tcatgaagaa cccgtgttgg 7981 tgcaaagcta tgggtggaac atagtccgtc tcaagagtgg ggtggacgtc tttcatatgg 8041 cggctgagcc gtgtgacacg ttgctgtgtg acataggtga gtcatcatct agtcctgaag 8101 tggaagaagc acggacgctc agagtcctct ccatggtggg ggattggctt gaaaaaagac 8161 caggagcctt ttgtataaaa gtgttgtgcc catacaccag cactatgatg gaaaccttgg 8221 agcgactgca gcgtaggtat gggggaggac tggtcagagt gccactctcc cgcaactcta 8281 cacatgagat gtactgggtc tctggagcga aaagcaacac cataaaaagt gtgtccacca 8341 cgagccagct cctcttgggg cgcatggacg ggcctaggag gccagtgaaa tatgaggagg 8401 atgtgaatct cggctctggc acgcgggctg tggtaagctg cgctgaagct cccaacatga 8461 agatcattgg tgaccgcatt gaaaggatcc gcagtgagca cgcggaaacg tggttctttg 8521 acgagaacca cccatatagg acatgggctt accatggaag ctatgaggcc cccacacaag 8581 ggtcagcgtc ctctctaata aacggggttg tcaggctcct gtcaaaaccc tgggatgtgg 8641 tgactggagt cacaggaata gccatgaccg acaccacacc gtatggtcag caaagagttt 8701 tcaaggaaaa agtggacact agggtgccag acccccaaga aggcactcgt caggttatga 8761 gcatggtctc ttcctggttg tggaaagagc taggcaaaca caaacggcca cgagtctgta 8821 ccaaagaaga gttcatcaac aaggttcgta gcaatgcagc attaggggca atatttgaag 8881 aggaaaaaga gtggaagact gcagtggagg ctgtgaacga tccaaggttc tgggctctag 8941 tggacaagga aagagagcac cacctgagag gagagtgcca gagttgtgtg tacaacatga 9001 tgggaaaaag agaaaagaaa caaggggaat ttggaaaggc caagggcagc cgcgccatct 9061 ggtatatgtg gctaggggct agatttctag agttcgaagc ccttggattc ttgaacgagg 9121 atcactggat ggggagagag aactcaggag gtggtgttga agggctggga ttacaaagac 9181 tcggatatgt cctagaagag atgagtcgca taccaggagg aaggatgtat gcagatgaca 9241 ctgctggctg ggacacccgc atcagcaggt ttgatctgga gaatgaagct ctaatcacca 9301 accaaatgga gaaagggcac agggccttgg cattggccat aatcaagtac acataccaan 9361 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 9421 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn ttgtcactta cgctcttaac acatttacca 9481 acctagtggt gcaactcatt cggaatatgg aggctgagga agttctagag atgcaagact 9541 tgtggctgct gcggaggtca gagaaagtga ccaactggtt gcagagcaac ggatgggata 9601 ggctcaaacg aatggcagtc agtggagatg attgcgttgt gaagccaatt gatgataggt 9661 ttgcacatgc cctcaggttc ttgaatgata tgggaaaagt taggaag [gap 603 bp] Expand Ns 10311 ttgggtgaag 10321 aagggtctac acctggagtg ctgtaagcac caatcttaat gttgtcaggc ctgctagtca 10381 gccacagctt gggaaagctg tgcagcctgt gaccccccag gagaagctgg gaaaccaagc 10441 ctatagtcag gccgagaacg ccatggcacg gaagaagcca tgctgcctgt gagcccctca 10501 gaggacactg agtcaaaaaa ccccacgcgc ttggaggcgc aggatgggaa aagaaggtgg 10561 cgaccttccc cacccttcaa tctggggcct gaactggaga tcagctgtgg atctccagaa 10621 gagg Link to comment Share on other sites More sharing 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niman Posted March 1, 2016 Author Report Share Posted March 1, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU729217.1|Zika virus isolate BeH823339 polyprotein gene, complete cds1207112071100%0.0100%KU729217.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1199011990100%0.099%KU509998.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1198411984100%0.099%KJ776791.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1198111981100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1198111981100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1198111981100%0.099%KU365779.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1198111981100%0.099%KU321639.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1196611966100%0.099%KU527068.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1196611966100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1196611966100%0.099%KU365777.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1195411954100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1195411954100%0.099%KU501216.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome1194811948100%0.099%KU497555.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1194811948100%0.099%KU365778.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1194411944100%0.099%KU501215.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1193911939100%0.099%KU647676.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1193511935100%0.099%KU312312.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1192611926100%0.099%KU761564.1Select seq gb|KU740184.1|Zika virus isolate GD01 polyprotein gene, complete cds1191711917100%0.099%KU740184.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1184011840100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1175011750100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds1156211562100%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds114591145998%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1142011420100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1135811358100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds1078910789100%0.096%HQ234499.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds87808780100%0.089%KF268948.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds87728772100%0.089%KF268950.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds87388738100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds87368736100%0.089%KF268949.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds87258725100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds87258725100%0.089%HQ234498.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds87168716100%0.089%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds87168716100%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds87068706100%0.089%DQ859059.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID87028702100%0.089%LC002520.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome86688668100%0.089%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds86448644100%0.089%KF383117.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds86308630100%0.089%HQ234501.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds85928592100%0.088%KF383116.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds85798579100%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds84308498100%0.088%KF383118.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence73537353100%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4962496241%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4935493541%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4628462838%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4619461938%0.099%KU646827.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3422342228%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3214321427%0.099%KU740199.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2682268222%0.099%KJ634273.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2042204217%0.099%KU686218.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds1332253494%0.068%DQ859064.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113311339%0.099%KU758878.1 Link to comment Share on other sites More sharing options...
niman Posted March 1, 2016 Author Report Share Posted March 1, 2016 Map Updatehttps://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en Link to comment Share on other sites More sharing options...
niman Posted March 3, 2016 Author Report Share Posted March 3, 2016 LOCUS KU729217 10645 bp RNA linear VRL 02-MAR-2016 DEFINITION Zika virus isolate BeH823339 polyprotein gene, complete cds. ACCESSION KU729217 VERSION KU729217.2 GI:1002394024 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10645) AUTHORS Faria,N.R., Azevedo,R.S.S., Kraemer,M.U.G., Souza,R., Cunha,M.S., Hill,S.C., Theze,J., Bonsall,M.B., Bodeng,T.A., Rissanen,I., Rocco,I.M., Nogueira,J.S., Maeda,A.Y., Vasami,F.G.S., Macedo,F.L.L., Suzuki,A., Rodrigues,S.G., Cruz,A.C.R., Diniz,B.T., Medeiros,D.B.A., Silva,E.V.P., Henriques,D.F., Travassos da Rosa,E.S., Oliveira,C.S., Martins,L.C., Vasconcelos,H.B., Casseb,L.M.N., Simith,D.B., Messina,J., Abade,L., Lourenco,J., Alcantara,L.C., Lima,M., Giovanetti,M., Hay,S.I., Oliveira,R.S., Lemos,P.S., Oliveira,L.F., Lima,C.P.S., Silva,S.P., Vasconcelos,J.M., Cardoso,J.F., Vianez-Junior,J.L.S.G., Mir,D., Bello,G., Delatorre,E., Khan,K., Creatore,M., Coelho,G.E., Oliveira,W.K., Tesh,R., Pybus,O.G., Nunes,M.R.T. and Vasconcelos,P.F.C. TITLE Zika virus in the Americas: early epidemiological and genetic findings JOURNAL Unpublished REFERENCE 2 (bases 1 to 10645) AUTHORS Nunes,M.R.T., Azevedo,R.S.S., Silva,S.P., Vasconcelos,J.M., Cardoso,J.F., Lemos,P.S., Lima,C.P.S., Oliveira,R.S., Faria,N.R., Vianez-Junior,J.L.S.G., Medeiros,D.B.A., Rodrigues,S.G., Diniz,B.T., Silva,E.V.P., Cruz,A.C.R. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (18-FEB-2016) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67030-000, Brazil REFERENCE 3 (bases 1 to 10645) AUTHORS Nunes,M.R.T., Azevedo,R.S.S., Silva,S.P., Vasconcelos,J.M., Cardoso,J.F., Lemos,P.S., Lima,C.P.S., Oliveira,R.S., Faria,N.R., Vianez-Junior,J.L.S.G., Medeiros,D.B.A., Rodrigues,S.G., Diniz,B.T., Silva,E.V.P., Cruz,A.C.R. and Vasconcelos,P.F.C. TITLE Direct Submission JOURNAL Submitted (02-MAR-2016) Center for Technological Innovation, Evandro Chagas Institute, BR 316, Km 07, s/n, Ananindeua, Para 67030-000, Brazil REMARK Sequence update by submitter COMMENT On Mar 2, 2016 this sequence version replaced gi:998491030. ##Assembly-Data-START## Assembly Method :: Mira 4.0 and Geneious 7.0 Sequencing Technology :: Ion and 454 ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10645 /organism="Zika virus" /mol_type="genomic RNA" /isolate="BeH823339" /host="Homo sapiens" /db_xref="taxon:64320" /country="Brazil" /collection_date="2015" CDS 76..10347 /codon_start=1 /product="polyprotein" /protein_id="AMK49164.2" /db_xref="GI:1002394025" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVSTTVSNMAEVRSYCYEATISDIASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTAVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKEKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSVVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPIAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGDRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 gttcgagttt gaagcgaaag ctagcaacag tatcaacagg ttttattttg gatttggaaa 61 cgagagtttc tggtcatgaa aaacccaaaa aagaaatccg gaggattccg gattgtcaat 121 atgctaaaac gcggagtagc ccgtgtgagc ccctttgggg gcttgaagag gctgccagcc 181 ggacttctgc tgggtcatgg gcccatcagg atggtcttgg cgattctagc ctttttgaga 241 ttcacggcaa tcaagccatc actgggtctc atcaatagat ggggttcagt ggggaaaaaa 301 gaggctatgg aaataataaa gaagttcaag aaagatctgg ctgccatgct gagaataatc 361 aatgctagga aggagaagaa gagacgaggc gcagatacta gtgtcggaat tgttggcctc 421 ctgctgacca cagctatggc agcggaggtc actagacgtg ggagtgcata ctatatgtac 481 ttggacagaa acgatgctgg ggaggccata tcttttccaa ccacattggg gatgaataag 541 tgttatatac agatcatgga tcttggacac atgtgtgatg ccaccatgag ctatgaatgc 601 cctatgctgg atgagggggt ggaaccagat gacgtcgatt gttggtgcaa cacgacgtca 661 acttgggttg tgtacggaac ctgccatcac aaaaaaggtg aagcacggag atctagaaga 721 gctgtgacgc tcccctccca ttccactagg aagctgcaaa cgcggtcgca aacctggttg 781 gaatcaagag aatacacaaa gcacttgatt agagtcgaaa attggatatt caggaaccct 841 ggcttcgcgt tagcagcagc tgccatcgct tggcttttgg gaagctcaac gagccaaaaa 901 gtcatatact tggtcatgat actgctgatt gccccggcat acagcatcag gtgcatagga 961 gtcagcaata gggactttgt ggaaggtatg tcaggtggga cttgggttga tgttgtcttg 1021 gaacatggag gttgtgtcac cgtaatggca caggacaaac cgactgtcga catagagctg 1081 gtttcaacaa cagtcagcaa catggcggag gtaagatcct actgctatga ggcaacaata 1141 tcagacatag cttcggacag ccgctgccca acacaaggtg aagcctacct tgacaagcaa 1201 tcagacactc aatatgtctg caaaagaacg ttagtggaca gaggctgggg aaatggatgt 1261 ggactttttg gcaaagggag cctggtgaca tgcgctaagt ttgcatgctc caagaaaatg 1321 accgggaaga gcatccagcc agagaatctg gagtaccgga taatgctgtc agttcatggc 1381 tcccagcaca gtgggatgat cgttaatgac acaggacatg aaactgatga gaatagagcg 1441 aaggttgaga taacgcccaa ttcaccaaga gccgaagcca ccctgggggg ttttggaagc 1501 ctaggacttg attgtgaacc gaggacaggc cttgactttt cagatttgta ttacttgact 1561 atgaataaca agcactggtt ggttcacaag gagtggttcc acgacattcc attaccttgg 1621 cacgctgggg cagacaccgg aactccacac tggaacaaca aagaagcact ggtagagttc 1681 aaggacgcac atgccaaaag gcaaactgcc gtggttctag ggagtcaaga aggagcagtt 1741 cacacggccc ttgctggagc tctggaggct gagatggatg gtgcaaaggg aaggctgtcc 1801 tctggccact tgaaatgtcg cctgaaaatg gataaactta gattgaaggg cgtgtcatac 1861 tccttgtgta ccgcagcgtt cacattcacc aagatcccgg ctgaaacact gcacgggaca 1921 gtcacagtgg aggtacagta cgcagggaca gatggacctt gcaaggttcc agctcagatg 1981 gcggtggaca tgcaaactct gaccccagtt gggaggttga taaccgctaa ccccgtaatc 2041 actgaaagca ctgagaactc taagatgatg ctggaacttg atccaccatt tggggactct 2101 tacattgtca taggagtcgg ggagaagaag atcacccacc actggcacag gagtggcagc 2161 accattggaa aagcatttga agccactgtg agaggtgcca agagaatggc agtcttggga 2221 gacacagcct gggactttgg atcagttgga ggcgctctca actcattggg caagggcatc 2281 catcaaattt ttggagcagc tttcaaatca ttgtttggag gaatgtcctg gttctcacaa 2341 atcctcattg gaacgttgct gatgtggttg ggtctgaaca caaagaatgg atctatttcc 2401 cttatgtgct tggccttagg gggagtgttg atcttcttat ccacagccgt ctctgctgat 2461 gtggggtgct cggtggactt ctcaaagaag gagacgagat gcggtacagg ggtgttcgtc 2521 tataacgacg ttgaagcctg gagggacagg tacaagtacc atcctgactc cccccgtaga 2581 ttggcagcag cagtcaagca agcctgggaa gatggtatct gcgggatctc ctctgtttca 2641 agaatggaaa acatcatgtg gagatcagta gaaggggagc tcaatgcaat cctggaagag 2701 aatggagttc aactgacggt cgttgtggga tctgtgaaaa accccatgtg gagaggtcca 2761 cagagattgc ccgtgcctgt gaacgagctg ccccacggct ggaaggcttg ggggaaatcg 2821 tacttcgtca gagcagcaaa gacaaataac agctttgtcg tggatggtga cacactgaag 2881 gaatgcccac tcaaacatag agcatggaac agctttcttg tggaggatca tgggttcggg 2941 gtatttcaca ctagtgtctg gctcaaggtt agagaagatt attcattaga gtgtgatcca 3001 gccgttattg gaacagctgt taaggaaaag gaggctgtac acagtgatct aggctactgg 3061 attgagagtg agaagaatga cacatggagg ctgaagaggg cccatctgat cgagatgaaa 3121 acatgtgaat ggccaaagtc ccacacattg tggacagatg gaatagaaga gagtgatctg 3181 atcataccca agtctttagc tgggccactc agccatcaca ataccagaga gggctacagg 3241 acccaaatga aagggccatg gcacagtgaa gagcttgaaa ttcggtttga ggaatgccca 3301 ggcactaagg tccacgtgga ggaaacatgt ggaacaagag gaccatctct gagatcaacc 3361 actgcaagcg gaagggtgat cgaggaatgg tgctgcaggg agtgcacaat gcccccactg 3421 tcgttccggg ctaaagatgg ctgttggtat ggaatggaga taagacccag gaaagaacca 3481 gaaagcaact tagtaaggtc agtggtgact gcaggatcaa ctgatcacat ggatcacttc 3541 tcccttggag tgcttgtgat tctgctcatg gtgcaggaag ggctgaagaa gagaatgacc 3601 acaaagatca tcataagcac atcaatggca gtgctggtag ctatgatcct gggaggattt 3661 tcaatgagtg acctggctaa gcttgcaatt ttgatgggtg ccaccttcgc ggaaatgaac 3721 actggaggag atgtagctca tctggcgctg atagcggcat tcaaagtcag accagcgttg 3781 ctggtatctt tcatcttcag agctaattgg acaccccgtg aaagcatgct gctggccttg 3841 gcctcgtgtc ttttgcaaac tgcgatctcc gccttggaag gcgacctgat ggttctcatc 3901 aatggttttg ctttggcctg gttggcaata cgagcgatgg ttgttccacg cactgataac 3961 atcaccttgg caatcctggc tgctctgaca ccactggccc ggggcacact gcttgtggcg 4021 tggagagcag gccttgctac ttgcgggggg tttatgctcc tctctctgaa gggaaaaggc 4081 agtgtgaaga agaacttacc atttgtcatg gccctgggac taaccgctgt gaggctggtc 4141 gaccccatca acgtggtggg actgctgttg ctcacaagga gtgggaagcg gagctggccc 4201 cctagcgaag tactcacagc tgttggcctg atatgcgcat tggctggagg gttcgccaag 4261 gcagatatag agatggctgg gcccatagcc gcggtcggtc tgctaattgt cagttacgtg 4321 gtctcaggaa agagtgtgga catgtacatt gaaagagcag gtgacatcac atgggaaaaa 4381 gatgcggaag tcactggaaa cagtccccgg ctcgatgtgg cgctagatga gagtggtgat 4441 ttctccctgg tggaggatga cggtcccccc atgagagaga tcatactcaa ggtggtcctg 4501 atgaccatct gtggcatgaa cccaatagcc ataccctttg cagctggagc gtggtacgta 4561 tacgtgaaga ctggaaaaag gagtggtgct ctatgggatg tgcctgctcc caaggaagta 4621 aaaaaggggg agaccacaga tggagtgtac agagtaatga ctcgtagact gctaggttca 4681 acacaagttg gagtgggagt tatgcaagag ggggtctttc acactatgtg gcacgtcaca 4741 aaaggatccg cgctgagaag cggtgaaggg agacttgatc catactgggg agatgtcaag 4801 caggatctgg tgtcatactg tggtccatgg aagctagatg ccgcctggga cgggcacagc 4861 gaggtgcagc tcttggccgt gccccccgga gagagagcga ggaacatcca gactctgccc 4921 ggaatattta agacaaagga tggggacatt ggagcggttg cgctggatta cccagcagga 4981 acttcaggat ctccaatcct agacaagtgt gggagagtga taggacttta tggcaatggg 5041 gtcgtgatca aaaatgggag ttatgttagt gccatcaccc aagggaggag ggaggaagag 5101 actcctgttg agtgcttcga gccttcgatg ctgaagaaga agcagctaac tgtcttagac 5161 ttgcatcctg gagctgggaa aaccaggaga gttcttcctg aaatagtccg tgaagccata 5221 aaaacaagac tccgtactgt gatcttagct ccaaccaggg ttgtcgctgc tgaaatggag 5281 gaagccctta gagggcttcc agtgcgttat atgacaacag cagtcaatgt cacccactct 5341 ggaacagaaa tcgtcgactt aatgtgccat gccaccttca cttcacgcct actacagcca 5401 atcagagtcc ccaactataa tctgtatatt atggatgagg cccacttcac agatccctca 5461 agtatagcag caagaggata catttcaaca agggttgaga tgggcgaggc ggctgccatc 5521 ttcatgaccg ccacgccacc aggaacccgt gacgcatttc cggactccaa ctcaccaatt 5581 atggacaccg aagtggaagt cccagagaga gcctggagct caggctttga ttgggtgacg 5641 gatcattctg gaaaaacagt ttggtttgtt ccaagcgtga ggaacggcaa tgagatcgca 5701 gcttgtctga caaaggctgg aaaacgggtc atacagctca gcagaaagac ttttgagaca 5761 gagttccaga aaacaaaaca tcaagagtgg gactttgtcg tgacaactga catttcagag 5821 atgggcgcca actttaaagc tgaccgtgtc atagattcca ggagatgcct aaagccggtc 5881 atacttgatg gcgagagagt cattctggct ggacccatgc ctgtcacaca tgccagcgct 5941 gcccagagga gggggcgcat aggcaggaat cccaacaaac ctggagatga gtatctgtat 6001 ggaggtgggt gcgcagagac tgacgaagac catgcacact ggcttgaagc aagaatgctc 6061 cttgacaata tttacctcca agatggcctc atagcctcgc tctatcgacc tgaggccgac 6121 aaagtagcag ccattgaggg agagttcaag cttaggacgg agcaaaggaa gacctttgtg 6181 gaactcatga aaagaggaga tcttcctgtt tggctggcct atcaggttgc atctgccgga 6241 ataacctaca cagatagaag atggtgcttt gatggcacga ccaacaacac cataatggaa 6301 gacagtgtgc cggcagaggt gtggaccaga cacggagaga aaagagtgct caaaccgagg 6361 tggatggacg ccagagtttg ttcagatcat gcggccctga agtcattcaa ggagtttgcc 6421 gctgggaaaa gaggagcggc ttttggagtg atggaagccc tgggaacact gccaggacac 6481 atgacagaga gattccagga agccattgac aacctcgctg tgctcatgcg ggcagagact 6541 ggaagcaggc cttacaaagc cgcggcggcc caattgccgg agaccctaga gaccattatg 6601 cttttggggt tgctgggaac agtctcgctg ggaatctttt tcgtcttgat gaggaacaag 6661 ggcataggga agatgggctt tggaatggtg actcttgggg ccagcgcatg gctcatgtgg 6721 ctctcggaaa ttgagccagc cagaattgca tgtgtcctca ttgttgtgtt cctattgctg 6781 gtggtgctca tacctgagcc agaaaagcaa agatctcccc aggacaacca aatggcaatc 6841 atcatcatgg tagcagtagg tcttctgggc ttgattaccg ccaatgaact cggatggttg 6901 gagagaacaa agagtgacct aagccatcta atgggaagga gagaggaggg agcaaccata 6961 ggattctcaa tggacattga cctgcggcca gcctcagctt gggccatcta tgctgccttg 7021 acaactttca ttaccccagc cgtccaacat gcagtgacca cttcatacaa caactactcc 7081 ttaatggcga tggccacgca agctggagtg ttgtttggta tgggcaaagg gatgccattc 7141 tacgcatggg actttggagt cccgctgcta atgataggtt gctactcaca attaacaccc 7201 ctgaccctaa tagtggccat cattttgctc gtggcgcact acatgtactt gatcccaggg 7261 ctgcaggcag cagctgcgcg tgctgcccag aagagaacgg cagctggcat catgaagaac 7321 cctgttgtgg atggaatagt ggtgactgac attgacacaa tgacaattga cccccaagtg 7381 gagaaaaaga tgggacaggt gctactcata gcagtagccg tctccagcgc catactgtcg 7441 cggaccgcct gggggtgggg ggaggctggg gccctgatta cagccgcaac ttccactttg 7501 tgggaaggct ctccgaacaa gtactggaac tcctctacag ccacttcact gtgtaacatt 7561 tttaggggaa gttacttggc tggagcttct ctaatctaca cagtaacaag aaacgctggc 7621 ttggtcaaga gacgtggggg tggaacagga gagaccctgg gagagaaatg gaaggcccgc 7681 ttgaaccaga tgtcggccct ggagttctac tcctacaaaa agtcaggcat caccgaggtg 7741 tgcagagaag aggcccgccg cgccctcaag gacggtgtgg caacgggagg ccatgctgtg 7801 tcccgaggaa gtgcaaagct gagatggttg gtggagcggg gatacctgca gccctatgga 7861 aaggtcattg atcttggatg tggcagaggg ggctggagtt actacgccgc caccatccgc 7921 aaagttcaag aagtgaaagg atacacaaaa ggaggccctg gtcatgaaga acccgtgttg 7981 gtgcaaagct atgggtggaa catagtccgt ctcaagagtg gggtggacgt ctttcatatg 8041 gcggctgagc cgtgtgacac gttgctgtgt gacataggtg agtcatcatc tagtcctgaa 8101 gtggaagaag cacggacgct cagagtcctc tccatggtgg gggattggct tgaaaaaaga 8161 ccaggagcct tttgcataaa agtgttgtgc ccatacacca gcactatgat ggaaaccttg 8221 gagcgactgc agcgtaggta tgggggagga ctggtcagag tgccactctc ccgcaactct 8281 acacatgaga tgtactgggt ctctggagcg aaaagcaaca ccataaaaag tgtgtccacc 8341 acgagccagc tcctcttggg gcgcatggac gggcctagga ggccagtgaa atatgaggag 8401 gatgtgaatc tcggctctgg cacgcgggct gtggtaagct gcgctgaagc tcccaacatg 8461 aagatcattg gtgaccgcat tgaaaggatc cgcagtgagc acgcggaaac gtggttcttt 8521 gacgagaacc acccatatag gacatgggct taccatggaa gctatgaggc ccccacacaa 8581 gggtcagcgt cctctctaat aaacggggtt gtcaggctcc tgtcaaaacc ctgggatgtg 8641 gtgactggag tcacaggaat agccatgacc gacaccacac cgtatggtca gcaaagagtt 8701 ttcaaggaaa aagtggacac tagggtgcca gacccccaag aaggcactcg tcaggttatg 8761 agcatggtct cttcctggtt gtggaaagag ctaggcaaac acaaacggcc acgagtctgt 8821 accaaagaag agttcatcaa caaggttcgt agcaatgcag cattaggggc aatatttgaa 8881 gaggaaaaag agtggaagac tgcagtggag gctgtgaacg atccaaggtt ctgggctcta 8941 gtggacaagg aaagagagca ccacctgaga ggagagtgcc agagttgtgt gtacaacatg 9001 atgggaaaaa gagaaaagaa acaaggggaa tttggaaagg ccaagggcag ccgcgccatc 9061 tggtatatgt ggctaggggc tagatttcta gagttcgaag cccttggatt cttgaacgag 9121 gatcactgga tggggagaga gaactcagga ggtggtgttg aagggctggg attacaaaga 9181 ctcggatatg tcctagaaga gatgagtcgc ataccaggag gaaggatgta tgcagatgac 9241 actgctggct gggacacccg catcagcagg tttgatctgg agaatgaagc tctaatcacc 9301 aaccaaatgg agaaagggca cagggccttg gcactggcca taatcaagta cacataccaa 9361 aacaaagtgg taaaggtcct tagaccagct gaaaaaggga aaacagttat ggacattatt 9421 tcgagacaag accaaagggg gagcggacaa gttgtcactt acgctcttaa cacatttacc 9481 aacctagtgg tgcaactcat tcggaatatg gaggctgagg aagttctaga gatgcaagac 9541 ttgtggctgc tgcggaggtc agagaaagtg accaactggt tgcagagcaa cggatgggat 9601 aggctcaaac gaatggcagt cagtggagat gattgcgttg tgaagccaat tgatgatagg 9661 tttgcacatg ccctcaggtt cttgaatgat atgggaaaag ttaggaagga cacacaagag 9721 tggaaaccct caactggatg ggacaactgg gaagaagttc cgttttgctc ccaccacttc 9781 aacaagctcc atctcaagga cgggaggtcc attgtggttc cctgccgcca ccaagatgaa 9841 ctgattggcc gggcccgcgt ctctccaggg gcgggatgga gcatccggga gactgcttgc 9901 ctagcaaaat catatgcgca aatgtggcag ctcctttatt tccacagaag ggacctccga 9961 ctgatggcca atgccatttg ttcatctgtg ccagttgact gggttccaac tgggagaact 10021 acctggtcaa tccatggaaa gggagaatgg atgaccactg aagacatgct tgtggtgtgg 10081 aacagagtgt ggattgagga gaacgaccac atggaagaca agaccccagt tacgaaatgg 10141 acagacattc cctatttggg aaaaagggaa gacttgtggt gtggatctct catagggcac 10201 agaccgcgca ccacctgggc tgagaacatt aaaaacacag tcaacatggt gcgcaggatc 10261 ataggtgatg aagaaaagta catggactac ctatccaccc aagttcgcta cttgggtgaa 10321 gaagggtcta cacctggagt gctgtaagca ccaatcttaa tgttgtcagg cctgctagtc 10381 agccacagct tggggaaagc tgtgcagcct gtgacccccc caggagaagc tgggaaacca 10441 agcctatagt caggccgaga acgccatggc acggaagaag ccatgctgcc tgtgagcccc 10501 tcagaggaca ctgagtcaaa aaaccccacg cgcttggagg cgcaggatgg gaaaagaagg 10561 tggcgacctt ccccaccctt caatctgggg cctgaactgg agatcagctg tggatctcca 10621 gaagagggac tagtggttag aggag Link to comment Share on other sites More sharing options...
niman Posted March 3, 2016 Author Report Share Posted March 3, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1839318393100%0.099%KU509998.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1839018390100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1838118381100%0.099%KU321639.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1837218372100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1837218372100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1837218372100%0.099%KU527068.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1837218372100%0.099%KU365779.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1835718357100%0.099%KU501217.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1835718357100%0.099%KU365780.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183541835499%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1835418354100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1835418354100%0.099%KU501216.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1835418354100%0.099%KU365777.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1833918339100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1833918339100%0.099%KU312312.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1833018330100%0.099%KU501215.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1831218312100%0.099%KU761564.1Select seq gb|KU740184.1|Zika virus isolate GD01 polyprotein gene, complete cds1830318303100%0.099%KU740184.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1814618146100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1804718047100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177391773999%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176941769498%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758517585100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1743817438100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164151641599%0.095%HQ234499.1 Link to comment Share on other sites More sharing options...
niman Posted March 5, 2016 Author Report Share Posted March 5, 2016 Updated maychesSequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1852518525100%0.0100%KU729217.2Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1839318393100%0.099%KU509998.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1839018390100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1838118381100%0.099%KU321639.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1837218372100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1837218372100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1837218372100%0.099%KU527068.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1837218372100%0.099%KU365779.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1835718357100%0.099%KU501217.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1835718357100%0.099%KU365780.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183541835499%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1835418354100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1835418354100%0.099%KU501216.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1835418354100%0.099%KU365777.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1833918339100%0.099%KU820897.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1833918339100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1833918339100%0.099%KU312312.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1833018330100%0.099%KU501215.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1831218312100%0.099%KU761564.1Select seq gb|KU740184.1|Zika virus isolate GD01 polyprotein gene, complete cds1830318303100%0.099%KU740184.1Select seq gb|KU820899.1|Zika virus isolate ZJ03 polyprotein gene, complete cds1828518285100%0.099%KU820899.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1814618146100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1804718047100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177391773999%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176941769498%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758517585100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1743817438100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164151641599%0.095%HQ234499.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1328413284100%0.089%KF268948.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1327913279100%0.089%KF383115.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1327713277100%0.089%KF268950.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1327513275100%0.089%KF268949.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1327213272100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132661326699%0.089%HQ234498.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1325713257100%0.089%DQ859059.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1325413254100%0.089%KF383119.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1325013250100%0.089%LC002520.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1322113221100%0.089%KF383116.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132051320599%0.089%HQ234501.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1319113191100%0.088%AY632535.2Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1314213142100%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131351313599%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1293112999100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128521285297%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108301083097%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4967496727%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4940494027%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4628462825%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4619461925%0.099%KU646827.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3422342218%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3214321417%0.099%KU740199.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2870419795%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2682268214%0.099%KJ634273.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2048204811%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2017201711%0.099%KU179098.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds175217529%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174817489%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174617469%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds174517459%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds174517459%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds174517459%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds174317439%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds160216028%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds142014207%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134613467%0.099%KU556802.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1306130610%0.088%AF013415.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds124012406%0.099%KU232300.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds123612366%0.099%KT200609.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds123112316%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122912296%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds122012206%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121812186%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds121412146%0.099%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120512056%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119511956%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118611866%0.099%KU232291.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113911396%0.099%KU758878.1 Link to comment Share on other sites More sharing options...
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