March 1, 201610 yr comment_2649 Taiwan CDC releases partial sequence, ZIKV/Thailand/1601Tw, from 2016 Taiwan traveler infected in Thailand.http://www.ncbi.nlm.nih.gov/nuccore/KU758878 Edited March 1, 201610 yr by niman Report
March 1, 201610 yr Author comment_2650 LOCUS KU758878 651 bp RNA linear VRL 25-FEB-2016 DEFINITION Zika virus polyprotein gene, partial cds. ACCESSION KU758878 VERSION KU758878.1 GI:1000837106 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 651) AUTHORS Shu,P.-Y., Wang,T.-C., Lin,S.-H., Hsu,T.-C. and Su,C.-L. TITLE First imported case of Zika virus infection, Taiwan 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 651) AUTHORS Shu,P.-Y., Wang,T.-C., Lin,S.-H., Hsu,T.-C. and Su,C.-L. TITLE Direct Submission JOURNAL Submitted (25-FEB-2016) Center for Research, Diagnostics and Vaccine Development, Centers for Disease Control, No. 161, Kun-yang Street, Taipei City, Taiwan 115, R.O.C. COMMENT ##Assembly-Data-START## Assembly Method :: DNAstar v. 8.1.5 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..651 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Thailand/1601Tw" /host="Homo sapiens" /db_xref="taxon:64320" /country="Thailand" /collection_date="Jan-2016" Report
March 1, 201610 yr Author comment_2651 LOCUS KU758878 651 bp RNA linear VRL 25-FEB-2016 DEFINITION Zika virus polyprotein gene, partial cds. ACCESSION KU758878 VERSION KU758878.1 GI:1000837106 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 651) AUTHORS Shu,P.-Y., Wang,T.-C., Lin,S.-H., Hsu,T.-C. and Su,C.-L. TITLE First imported case of Zika virus infection, Taiwan 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 651) AUTHORS Shu,P.-Y., Wang,T.-C., Lin,S.-H., Hsu,T.-C. and Su,C.-L. TITLE Direct Submission JOURNAL Submitted (25-FEB-2016) Center for Research, Diagnostics and Vaccine Development, Centers for Disease Control, No. 161, Kun-yang Street, Taipei City, Taiwan 115, R.O.C. COMMENT ##Assembly-Data-START## Assembly Method :: DNAstar v. 8.1.5 Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..651 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Thailand/1601Tw" /host="Homo sapiens" /db_xref="taxon:64320" /country="Thailand" /collection_date="Jan-2016" CDS 1..>651 /note="C-preM" /codon_start=1 /product="polyprotein" /protein_id="AML60296.1" /db_xref="GI:1000837107" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGTDTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRSDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAV" ORIGIN 1 atgaaaaacc caaaaaagaa atccggagga ttccggattg tcaatatgct aaaacgcgga 61 gtagcccgtg tgagcccctt tgggggcttg aagaggctgc cagccggact tctgctgggt 121 catgggccca tcaggatggt cttggcgatt ctagcctttt tgagattcac ggcaatcaag 181 ccatcactgg gtctcatcaa tagatggggt tcagtgggga aaaaagaggc tatggaaata 241 ataaagaagt tcaagaaaga tctggctgcc atgctgagaa taatcaatgc taggaaggag 301 aagaagagac gaggcacaga cactagtgtc ggaattgttg gcctcctgct gaccacagcc 361 atggcagcgg aggtcactag acgtgggagt gcatactata tgtacttgga cagaagcgat 421 gctggggagg ccatatcttt tccaaccaca ctggggatga ataagtgtta tatacagatc 481 atggatcttg gacacatgtg tgatgccacc atgagctatg aatgccctat gctggatgag 541 ggggtagaac cagatgacgt cgattgttgg tgcaacacga cgtcaacttg ggttgtgtac 601 ggaacctgcc accacaaaaa aggtgaggca cggagatcta gaagagctgt g Report
March 1, 201610 yr Author comment_2652 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU758878.1|Zika virus polyprotein gene, partial cds11751175100%0.0100%KU758878.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome11481148100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds11421142100%0.099%JN860885.1Select seq gb|KU740184.1|Zika virus isolate GD01 polyprotein gene, complete cds11391139100%0.099%KU740184.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome11391139100%0.099%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds11391139100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds11391139100%0.099%KU501216.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds11391139100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds11391139100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds11391139100%0.099%KU365777.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds11391139100%0.099%KU312314.1Select seq gb|KU729217.1|Zika virus isolate BeH823339 polyprotein gene, complete cds11331133100%0.099%KU729217.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds11331133100%0.099%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome11331133100%0.099%KU527068.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds11331133100%0.099%KU686218.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds11331133100%0.099%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome11331133100%0.099%KU509998.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome11331133100%0.099%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds11331133100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds11331133100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds11331133100%0.099%KJ776791.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds11301130100%0.098%KU729218.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome11301130100%0.098%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome11301130100%0.098%KU497555.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds11301130100%0.098%KU312313.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome11301130100%0.098%KU321639.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds11191119100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome11061106100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds10851085100%0.097%HQ234499.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds96696682%0.099%KF993678.1 Report
March 1, 201610 yr Author comment_2658 Sequence map updated https://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en Report
March 18, 201610 yr Author comment_3457 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU758878.1|Zika virus polyprotein gene, partial cds11751175100%0.0100%KU758878.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome11481148100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds11421142100%0.099%JN860885.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds11391139100%0.099%KU729217.2Select seq gb|KU740184.1|Zika virus isolate GD01 polyprotein gene, complete cds11391139100%0.099%KU740184.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome11391139100%0.099%KU707826.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds11391139100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds11391139100%0.099%KU501216.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds11391139100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds11391139100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds11391139100%0.099%KU365777.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds11391139100%0.099%KU312314.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome11331133100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome11331133100%0.099%KU853012.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds11331133100%0.099%KU820897.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds11331133100%0.099%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome11331133100%0.099%KU527068.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds11331133100%0.099%KU686218.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds11331133100%0.099%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome11331133100%0.099%KU509998.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome11331133100%0.099%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds11331133100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds11331133100%0.099%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds11331133100%0.099%KJ776791.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome11301130100%0.098%KU820899.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds11301130100%0.098%KU729218.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome11301130100%0.098%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome11301130100%0.098%KU497555.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds11301130100%0.098%KU312313.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome11301130100%0.098%KU321639.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds11191119100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome11061106100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds10851085100%0.097%HQ234499.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds96696682%0.099%KF993678.1 Report
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