Feb 2016 Partial Zika Sequence From Moscow ex-Dominican Republic Traveler

[niman]

State Research Center of Virology and Biotechnology 'Vector' has released a partial February 2016 Zika sequence, Moscow-2016, from a Moscow traveler infected in the Dominican Republic.

http://www.ncbi.nlm.nih.gov/nuccore/KU844090.1

 

[niman]

LOCUS       KU844090                 281 bp    RNA     linear   VRL 01-MAR-2016
DEFINITION  Zika virus isolate Moscow-2016 polyprotein gene, partial cds.
ACCESSION   KU844090
VERSION     KU844090.1  GI:1002167045
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 281)
  AUTHORS   Popova,A.Y., Maksyutov,R.A., Bodnev,S.A., Tregubchak,T.V.,
            Pyankov,O.V., Demina,Y.V., Agafonov,A.P. and Miheev,V.N.
  TITLE     Zika virus in a human, Russia, 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 281)
  AUTHORS   Popova,A.Y., Maksyutov,R.A., Bodnev,S.A., Tregubchak,T.V.,
            Pyankov,O.V., Demina,Y.V., Agafonov,A.P. and Miheev,V.N.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-FEB-2016) Laboratory of Diagnosis and Repository of
            Variola Virus DNA, State Research Center of Virology and
            Biotechnology 'Vector', Koltsovo, Novosibirsk Region 630559, Russia
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Moscow-2016"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Russia"
                     /collection_date="Feb-2016"
     CDS             <1..>281
                     /codon_start=2
                     /product="polyprotein"
                     /protein_id="AMM76159.1"
                     /db_xref="GI:1002167046"
                     /translation="PAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPT
                     VDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQ"
ORIGIN      
        1 cccggcatac agcatcaggt gcataggagt cagcaatagg gactttgtgg aaggtatgtc
       61 aggtgggact tgggttgatg ttgtcttgga acatggaggt tgtgtcaccg taatggcaca
      121 ggacaaaccg actgtcgaca tagagctggt tacaacaaca gtcagcaaca tggcggaggt
      181 aagatcctac tgctatgagg catcaatatc agacatggct tcggacagcc gctgcccaac
      241 acaaggtgaa gcctaccttg acaagcaatc agacactcaa t

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU844090.1|	Zika virus isolate Moscow-2016 polyprotein gene, partial cds	508	508	100%	3e-140	100%	KU844090.1
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	508	508	100%	3e-140	100%	KU729218.1
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	508	508	100%	3e-140	100%	KU761564.1
Select seq gb|KU740184.1|	Zika virus isolate GD01 polyprotein gene, complete cds	508	508	100%	3e-140	100%	KU740184.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	508	508	100%	3e-140	100%	KU527068.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	508	508	100%	3e-140	100%	KU647676.1
Select seq gb|KU509998.1|	Zika virus strain Haiti/1225/2014, complete genome	508	508	100%	3e-140	100%	KU509998.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	508	508	100%	3e-140	100%	KU365778.1
Select seq gb|KU312315.1|	Zika virus isolate Z1106027 polyprotein gene, partial cds	508	508	100%	3e-140	100%	KU312315.1
Select seq gb|KU312314.1|	Zika virus isolate Z1106031 polyprotein gene, partial cds	508	508	100%	3e-140	100%	KU312314.1
Select seq gb|KU312313.1|	Zika virus isolate Z1106032 polyprotein gene, partial cds	508	508	100%	3e-140	100%	KU312313.1
Select seq gb|KM212966.1|	Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds	508	508	100%	3e-140	100%	KM212966.1
Select seq gb|KJ579441.1|	Zika virus isolate PF13-CP221013c polyprotein gene, partial cds	508	508	100%	3e-140	100%	KJ579441.1
Select seq dbj|AB908162.1|	Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID	508	508	100%	3e-140	100%	AB908162.1
Select seq gb|KU820899.1|	Zika virus isolate ZJ03 polyprotein gene, complete cds	502	502	100%	1e-138	99%	KU820899.1
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	502	502	100%	1e-138	99%	KU820897.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	502	502	100%	1e-138	99%	KU744693.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	502	502	100%	1e-138	99%	KU497555.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	502	502	100%	1e-138	99%	KU707826.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	502	502	100%	1e-138	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	502	502	100%	1e-138	99%	KU501216.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	502	502	100%	1e-138	99%	KU501215.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	502	502	100%	1e-138	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	502	502	100%	1e-138	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	502	502	100%	1e-138	99%	KU365777.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	502	502	100%	1e-138	99%	KU312312.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	502	502	100%	1e-138	99%	KU321639.1
Select seq gb|KM212965.1|	Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds	502	502	100%	1e-138	99%	KM212965.1
Select seq gb|KM212964.1|	Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds	502	502	100%	1e-138	99%	KM212964.1
Select seq gb|KM212963.1|	Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds	502	502	100%	1e-138	99%	KM212963.1
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	502	502	100%	1e-138	99%	KJ776791.1
Select seq gb|KJ680134.1|	Zika virus strain PF13-091213-121 polyprotein gene, partial cds	502	502	100%	1e-138	99%	KJ680134.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	499	499	100%	2e-137	99%	KU681081.3
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	499	499	100%	2e-137	99%	JN860885.1
Select seq gb|KU729217.1|	Zika virus isolate BeH823339 polyprotein gene, complete cds	493	493	100%	7e-136	99%	KU729217.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	491	491	99%	2e-135	99%	KF993678.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	484	484	100%	4e-133	98%	KU681082.3
Select seq gb|KU646828.1|	Zika virus isolate Si322 polyprotein gene, partial cds	484	484	95%	4e-133	100%	KU646828.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	484	484	100%	4e-133	98%	EU545988.1
Select seq gb|KU686218.1|	Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds	480	480	100%	4e-132	98%	KU686218.1
Select seq gb|KU646827.1|	Zika virus isolate Si323 polyprotein gene, partial cds	479	479	95%	2e-131	99%	KU646827.1
Select seq gb|KJ634273.1|	Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds	479	479	95%	2e-131	99%	KJ634273.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	439	439	100%	1e-119	95%	HQ234499.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	417	417	100%	4e-113	93%	KF268949.1
Select seq gb|KT381874.1|	Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds	416	416	84%	2e-112	99%	KT381874.1

[niman]

Sequence map updated

https://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en