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Feb 2016 Partial NS2 Zika Sequence Moscow ex-Dominican Republic


niman

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LOCUS       KU872850                 459 bp ss-RNA     linear   VRL 07-MAR-2016
DEFINITION  Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds.
ACCESSION   KU872850
VERSION     KU872850.1  GI:1003121936
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Karan,L.S., Maleev,V.V., Fedorova,M.V., Grigorieva,Y.E.,
            Kotiv,S.I., Voldokhina,A.V., Shipulin,G.A. and Pokrovsky,V.I.
  TITLE     First case of imported Zika virus disease in Russia from Dominican
            Republic, February 2016
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Karan,L.S., Maleev,V.V., Fedorova,M.V., Grigorieva,Y.E., Kotiv,S.I.
            and Voldokhina,A.V.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-MAR-2016) Central Research Institute of Epidemiology,
            Novogireevskaya Str, 3a, Moscow 111123, Russia
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Dominican Rep-Rus-2016"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Russia"
                     /collection_date="Feb-2016"
                     /note="type: Asian"
     CDS             <1..>459
                     /codon_start=1
                     /product="NS2"
                     /protein_id="AMO25682.1"
                     /db_xref="GI:1003121937"
                     /translation="TAISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALT
                     PLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGL
                     LLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSY"
ORIGIN      
        1 actgcgatct ccgccttgga gggcgacctg atggttctca tcaatggttt tgctttggcc
       61 tggttggcaa tacgagcgat ggttgttcca cgcactgaca acatcacctt ggcaatcctg
      121 gctgctctga caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct
      181 acttgcgggg ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta
      241 ccatttgtca tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg
      301 ggactgctgt tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca
      361 gctgttggcc tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct
      421 gggcccatgg ccgcggtcgg tctgctaatt gtcagttac
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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
829829100%0.0100%KU872850.1
823823100%0.099%KU820897.1
823823100%0.099%KU497555.1
820820100%0.099%KU820899.2
820820100%0.099%KU729218.1
820820100%0.099%KU707826.1
820820100%0.099%KU527068.1
820820100%0.099%KU501217.1
820820100%0.099%KU501216.1
820820100%0.099%KU501215.1
820820100%0.099%KU365780.1
820820100%0.099%KU365779.1
820820100%0.099%KU365777.1
820820100%0.099%KU312312.1
820820100%0.099%KJ776791.1
814814100%0.099%KU853013.1
814814100%0.099%KU853012.1
814814100%0.099%KU729217.2
814814100%0.099%KU744693.1
814814100%0.099%KU647676.1
814814100%0.099%KU509998.1
814814100%0.099%KU365778.1
814814100%0.099%KU321639.1
810810100%0.099%KU761564.1
810810100%0.099%KU681081.3
810810100%0.099%KU740184.1
810810100%0.099%KU740199.1
796796100%0.098%KF993678.1
796796100%0.098%JN860885.1
792792100%0.098%KU681082.3
756756100%0.097%EU545988.1
726726100%0.095%HQ234499.1
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