niman Posted March 20, 2016 Report Share Posted March 20, 2016 Israel MoH releases partial sequence from traveler to Colombia (Zika 269, Jan 19 2016 collection).http://www.ncbi.nlm.nih.gov/nuccore/KU926323 Link to comment Share on other sites More sharing options...
niman Posted March 20, 2016 Author Report Share Posted March 20, 2016 LOCUS KU926323 231 bp RNA linear VRL 17-MAR-2016 DEFINITION Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds. ACCESSION KU926323 VERSION KU926323.1 GI:1006592943 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 231) AUTHORS Lustig,Y., Meltzer,E., Leshem,E., Koren,R., Levy,R., Hindiyeh,M., Mendelson,E. and Schwartz,E. TITLE Zika virus in Israeli travelers: Asia, Central and South America JOURNAL Unpublished REFERENCE 2 (bases 1 to 231) AUTHORS Lustig,Y., Meltzer,E., Leshem,E., Koren,R., Levy,R., Hindiyeh,M., Mendelson,E. and Schwartz,E. TITLE Direct Submission JOURNAL Submitted (16-MAR-2016) Central Virology Laboratory, Ministry of Health, Sheba Way, Ramat-Gan 5262100, Israel COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..231 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Zika 269 Israel ex Colombia 2016" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:64320" /country="Israel" /collection_date="19-Jan-2016" Link to comment Share on other sites More sharing options...
niman Posted March 20, 2016 Author Report Share Posted March 20, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU926326.1|Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cds427427100%4e-116100%KU926326.1Select seq gb|KU926325.1|Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cds427427100%4e-116100%KU926325.1Select seq gb|KU926324.1|Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cds427427100%4e-116100%KU926324.1Select seq gb|KU926323.1|Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds427427100%4e-116100%KU926323.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome427427100%4e-116100%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome427427100%4e-116100%KU922923.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds427427100%4e-116100%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds427427100%4e-116100%KU740184.2Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome427427100%4e-116100%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome427427100%4e-116100%KU853012.1Select seq gb|KU844090.1|Zika virus isolate Moscow-2016 polyprotein gene, partial cds427427100%4e-116100%KU844090.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds427427100%4e-116100%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds427427100%4e-116100%KU761564.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome427427100%4e-116100%KU527068.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds427427100%4e-116100%KU646828.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds427427100%4e-116100%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome427427100%4e-116100%KU509998.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds427427100%4e-116100%KU365778.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds427427100%4e-116100%KU312315.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds427427100%4e-116100%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds427427100%4e-116100%KU312313.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds427427100%4e-116100%KM212966.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds427427100%4e-116100%KJ579441.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID427427100%4e-116100%AB908162.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds422422100%2e-11499%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome422422100%2e-11499%KU820899.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds422422100%2e-11499%KU820897.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome422422100%2e-11499%KU744693.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome422422100%2e-11499%KU497555.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome422422100%2e-11499%KU707826.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds422422100%2e-11499%KU646827.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds422422100%2e-11499%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds422422100%2e-11499%KU501216.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome422422100%2e-11499%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds422422100%2e-11499%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds422422100%2e-11499%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds422422100%2e-11499%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds422422100%2e-11499%KU312312.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome422422100%2e-11499%KU321639.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds422422100%2e-11499%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds422422100%2e-11499%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds422422100%2e-11499%KM212963.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds422422100%2e-11499%KF993678.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds422422100%2e-11499%KJ634273.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds422422100%2e-11499%KJ776791.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds422422100%2e-11499%KJ680134.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome416416100%9e-11399%KU681081.3Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds416416100%9e-11399%KU686218.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds416416100%9e-11399%JN860885.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds411411100%4e-11199%KU729217.2Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome411411100%4e-11199%KU681082.3Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds405405100%2e-10998%EU545988.1Select seq gb|KT381874.1|Zika virus strain Zika1697_BR-RJ/2015 envelope protein gene, partial cds40140197%2e-10899%KT381874.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds355355100%2e-9494%HQ234499.1 Link to comment Share on other sites More sharing options...
niman Posted March 20, 2016 Author Report Share Posted March 20, 2016 Sequence map updatehttps://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en Link to comment Share on other sites More sharing options...
niman Posted March 22, 2016 Author Report Share Posted March 22, 2016 Zika virus polyprotein gene, partial cds.PopSet: 1006592943GenBank FASTAGo to:Study DetailsZika virus in Israeli travelers: Asia, Central and South AmericaLustig,Y., Meltzer,E., Leshem,E., Koren,R., Levy,R., Hindiyeh,M., Mendelson,E. and Schwartz,E. Go to:Sequences in this data setKU926326.1Zika virus isolate Zika 2235 Israel ex Colombia 2015 polyprotein gene, partial cdsKU926325.1Zika virus isolate Zika 356 Israel ex Mexico 2016 polyprotein gene, partial cdsKU926324.1Zika virus isolate Zika 352 Israel ex Vietnam 2016 polyprotein gene, partial cdsKU926323.1Zika virus isolate Zika 269 Israel ex Colombia 2016 polyprotein gene, partial cds Link to comment Share on other sites More sharing options...
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