niman Posted March 26, 2016 Report Share Posted March 26, 2016 Guangdong CDC has released full sequence of Zika import collected Feb 26,2016, Z16019. Link to comment Share on other sites More sharing options...
niman Posted March 26, 2016 Author Report Share Posted March 26, 2016 LOCUS KU955590 10569 bp RNA linear VRL 25-MAR-2016 DEFINITION Zika virus isolate Z16019 polyprotein gene, complete cds. ACCESSION KU955590 VERSION KU955590.1 GI:1008913389 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10569) AUTHORS Wu,D., Gu,D., Guan,D., Lei,S., Sun,J., Zhang,H., Tan,Q., Ning,D., Su,J., Zhou,H. and Ke,C. TITLE Large returning population of oversea Chinese of Guangdong province combined with tourists increase the risks of ZIKV transmission in Guangdong, China JOURNAL Unpublished REFERENCE 2 (bases 1 to 10569) AUTHORS Wu,D., Guan,D., Sun,J., Zhang,H., Tan,Q., Ning,D., Su,J., Zhou,H. and Ke,C. TITLE Direct Submission JOURNAL Submitted (23-MAR-2016) Institute of Microbiology, Center for Diseases Control and Prevention of Guangdong Province, No. 160, Qunxian Road, Dashi town, Panyu District, Guangzhou, Guangdong 511430, China COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10569 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Z16019" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="China" /collection_date="26-Feb-2016" /note="genotype: Asian" CDS 45..10316 /codon_start=1 /product="polyprotein" /protein_id="AMR39831.1" /db_xref="GI:1008913390" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAVRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVDRGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVASCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 atcaacaggt tttattttgg atttggaaac gagagtttct ggtcatgaaa aacccaaaaa 61 agaaatccgg aggattccgg attgtcaata tgctaaaacg cggagtagcc cgtgtgagcc 121 cctttggggg cttgaagagg ctgccagccg gacttctgct gggtcatggg cccatcagga 181 tggtcttggc gattctagcc tttttgagat tcacggcaat caagccatca ctgggtctca 241 tcaatagatg gggttcagtg gggaaaaaag aggctatgga aataataaag aagttcaaga 301 aagatctggc tgccatgctg agaataatca atgctaggaa ggagaagaag agacgaggcg 361 cagatactag tgtcggaatt gttggcctcc tgctgaccac agctatggca gcggaggtca 421 ctagacgtgg gagtgcatac tatatgtact tggacagaaa cgatgctggg gaggccatat 481 cttttccaac cacattgggg atgaataagt gttatataca gatcatggat cttggacaca 541 tgtgtgatgc caccatgagc tatgaatgcc ctatgctgga tgagggggtg gaaccagatg 601 acgtcgattg ttggtgcaac acgacgtcaa cttgggttgt gtacggaacc tgccatcaca 661 aaaaaggtga agcacggaga tctagaagag ctgtgacgct cccttcccat tccactagga 721 agctgcaaac gcggtcgcaa acctggttgg aatcaagaga atacacaaag cacttgatta 781 gagtcgaaaa ttggatattc aggaaccctg gcttcgcgtt agcagcagct gccatcgctt 841 ggcttttggg aagctcaacg agccaaaaag tcatatactt ggtcatgata ctgctgattg 901 ccccggcata cagcatcagg tgcataggag tcagcaatag ggactttgtg gaaggtatgt 961 caggtgggac ttgggtcgat gttgtcttgg aacatggagg ttgtgtcacc gtaatggcac 1021 aggacaaacc gactgtcgac atagagctgg ttacaacaac agtcagcaac atggcggagg 1081 taagatccta ctgctatgag gcatcaatat cagacatggc ttcggacagc cgctgcccaa 1141 cacaaggtga agcctacctt gacaagcaat cagacactca atatgtctgc aaaagaacgt 1201 tagtggacag aggctgggga aatggatgtg gactttttgg caaagggagc ctggtgacat 1261 gcgctaagtt tgcatgctcc aagaaaatga ccgggaagag catccagcca gagaatctgg 1321 agtaccggat aatgctgtca gttcatggct cccagcacag tgggatgatc gttaatgaca 1381 caggacatga aactgatgag aatagagcga aagttgagat aacgcccaat tcaccaagag 1441 ccgaagccac cctggggggt tttggaagcc taggacttga ttgtgaaccg aggacaggcc 1501 ttgacttttc agatttgtat tacttgacta tgaataacaa gcactggttg gttcacaagg 1561 agtggttcca cgacattcca ttaccttggc acgcaggggc agacaccgga actccacact 1621 ggaacaacaa agaagcactg gtagagttca aggacgcaca tgccaaaagg caaactgtcg 1681 tggttctagg gagtcaagaa ggagcagttc acacggccct tgctggagct ctggaggctg 1741 agatggatgg agcaaaggga aggctgtcct ctggccactt gaaatgtcgc ctgaaaatgg 1801 ataaacttag attgaagggc gtgtcatact ccttgtgtac tgcagcgttc acattcacca 1861 agatcccggc tgaaacactg cacgggacag tcacagtgga ggtacagtac gcagggacag 1921 atggaccttg caaggttcca gctcagatgg cggtggacat gcaaactctg accccagttg 1981 ggaggttgat aaccgctaac cccgtaatca ctgaaagcac tgagaactct aagatgatgc 2041 tggaacttga tccaccattt ggggactctt acattgtcat aggagtcggg gagaagaaga 2101 tcacccacca ctggcacagg agtggcagca ccattggaaa agcatttgaa gccactgtga 2161 gaggtgccaa gagaatggca gtcttgggag acacagcctg ggactttgga tcagttggag 2221 gcgctctcaa ctcattgggc aagggcatcc atcaaatttt tggagcagct ttcaaatcat 2281 tgtttggagg aatgtcctgg ttctcacaaa ttctcattgg aacgttgctg atgtggttgg 2341 gtctgaacac aaagaatgga tctatttccc ttatgtgctt ggccttaggg ggagtgttga 2401 tcttcttatc cacagccgtc tctgctgatg tggggtgctc ggtggacttc tcaaagaagg 2461 agacgagatg cggtacaggg gtgtttgtct ataacgacgt tgaagcctgg agggacaggt 2521 acaagtacca tcctgactcc ccccgtagat tggcagcagc agtcaagcaa gcctgggaag 2581 atggtatctg cgggatctcc tctgtttcaa gaatggaaaa catcatgtgg agatcagtag 2641 aaggggagct caacgcaatc ctggaagaga atggagttca actgacggtc gttgtgggat 2701 ctgtaaaaaa ccccatgtgg agaggtccac agagattgcc cgtgcctgtg aacgagctgc 2761 cccacggctg gaaggcttgg gggaaatcgt acttcgtcag agcagcaaag acaaataaca 2821 gctttgtcgt ggatggtgac acactgaagg aatgcccact caaacataga gcatggaaca 2881 gctttcttgt ggaggatcat gggttcgggg tatttcacac tagtgtctgg ctcaaggtta 2941 gagaagatta ttcattagag tgtgatccag ccgttattgg aacagctgtt aagggaaagg 3001 aggctgtaca cagtgatcta ggctactgga ttgagagtga gaagaatgac acatggaggc 3061 tgaagagggc ccatctgatc gagatgaaaa catgtgaatg gccaaagtcc cacacattgt 3121 ggacagatgg aatagaagag agtgatctga tcatacccaa gtctttagct gggccactca 3181 gccatcacaa taccagagag ggctacagga cccaaatgaa agggccatgg cacagtgaag 3241 agcttgaaat tcggtttgag gaatgcccag gcactaaggt ccacgtggag gaaacatgtg 3301 gaacaagagg accatctctg agatcaacca ctgcaagcgg aagggtgatc gaggaatggt 3361 gctgcaggga gtgcacaatg cccccactgt cgttccgggc taaagatggc tgttggtatg 3421 gaatggagat aaggcccagg aaagaaccag aaagcaactt agtaaggtca atggtgactg 3481 caggatcaac tgatcacatg gaccacttct cccttggagt gcttgtgatt ctgctcatgg 3541 tgcaggaagg gctgaagaag agaatgacca caaagatcat cataagcaca tcaatggcag 3601 tgctggtagc tatgatcctg ggaggatttt caatgagtga cctggctaag cttgcaattt 3661 tgatgggtgc caccttcgcg gaaatgaaca ctggaggaga tgtagctcat ctggcgctga 3721 tagcggcatt caaagtcaga ccagcgttgc tggtatcttt catcttcaga gctaattgga 3781 caccccgtga aagcatgctg ctggccttgg cctcgtgtct tttgcaaact gcgatctccg 3841 ccttggaagg cgacctgatg gttctcatca atggttttgc tttggcctgg ttggcagtac 3901 gagcgatggt tgttccacgc actgataaca tcaccctagc aatcctggct gctctgacac 3961 cactggcccg gggcacactg cttgtggcgt ggagagcagg ccttgctact tgcggggggt 4021 ttatgctcct ctctctgaag ggaaaaggca gtgtgaagaa gaacttacca tttgtcatgg 4081 ccctgggact aaccgctgtg aggctggtcg accccatcaa cgtggtggga ctgctgttgc 4141 tcacaaggag tgggaagcgg agctggcccc ctagcgaagt actcacagct gttggcctga 4201 tatgcgcatt ggctggaggg ttcgccaagg cagatataga gatggctggg cccatggccg 4261 cggtcggtct gctaattgtc agttacgtgg tctcaggaaa gagtgtggac atgtacattg 4321 aaagagcagg tgacatcaca tgggaaaaag atgcggaagt cactggaaac agtccccggc 4381 tcgatgtggc gctagatgag agtggtgatt tctccctggt ggaggatgac ggtcccccca 4441 tgagagagat catactcaag gtggtcctga tgaccatctg tggcatgaac ccaatagcca 4501 taccctttgc agctggagcg tggtacgtat acgtgaagac tggaaaaagg agtggtgctc 4561 tatgggatgt gcctgctccc aaggaagtaa aaaaggggga gaccacagat ggagtgtaca 4621 gagtaatgac tcgtagactg ctaggttcaa cacaagttgg agtgggagtt atgcaagagg 4681 gggtctttca cactatgtgg cacgtcacaa aaggatccgc gctgagaagc ggtgaaggga 4741 gacttgatcc atactgggga gatgtcaagc aggatctggt gtcatactgt ggtccatgga 4801 agctagatgc cgcctgggac gggcacagcg aggtgcagct cttggccgtg ccccccggag 4861 agagagcgag gaacatccag actctgcccg gaatatttaa gacaaaggat ggggacattg 4921 gagcggttgc gctggattac ccagcaggaa cttcaggatc tccaatccta gacaagtgtg 4981 ggagagtgat aggactttat ggcaatgggg tcgtgatcaa aaatgggagt tatgttagtg 5041 ccatcaccca agggaggagg gaggaagaga ctcctgttga gtgcttcgag ccttcgatgc 5101 tgaagaagaa gcagctaact gtcttagact tgcatcctgg agctgggaaa accaggagag 5161 ttcttcctga aatagtccgt gaagccataa aaacaagact ccgtactgtg atcttagctc 5221 caaccagggt tgtcgctgct gaaatggagg aggcccttag agggcttcca gtgcgttata 5281 tgacaacagc agtcaatgtc acccactctg gaacagaaat cgtcgactta atgtgccatg 5341 ccaccttcac ttcacgtcta ctacagccaa ttagagtccc caactataat ctgtatatta 5401 tggatgaggc ccactttaca gatccctcaa gtatagcagc aagaggatac atttcaacaa 5461 gggttgagat gggcgaggcg gctgccatct tcatgaccgc cacgccacca ggaacccgtg 5521 acgcatttcc ggactccaac tcaccaatta tggacaccga agtggaagtc ccagagagag 5581 cctggagctc aggctttgat tgggtgacgg atcattctgg aaaaacagtt tggtttgttc 5641 caagcgtgag gaacggcaat gagatcgcag cttgtctgac aaaggctgga aaacgggtca 5701 tacagctcag cagaaagact tttgagacag agttccagaa aacaaaacat caagagtggg 5761 actttgtcgt gacaactgac atttcagaga tgggcgccaa ctttaaagct gaccgtgtca 5821 tagattccag gagatgccta aagccggtca tacttgatgg cgagagagtc attctggctg 5881 gacccatgcc tgtcacacat gccagcgctg cccagaggag ggggcgcata ggcaggaatc 5941 ccaacaaacc tggagatgag tatctgtatg gaggtgggtg cgcagagact gacgaagacc 6001 atgcacattg gcttgaagca agaatgctcc ttgacaatat ttacctccaa gatggcctca 6061 tagcctcgct ctatcgacct gaggccgaca aagtagcagc cattgaggga gagttcaagc 6121 ttaggacgga gcaaaggaag acctttgtgg aactcatgaa aagaggagat cttcctgttt 6181 ggctggccta tcaggttgca tctgccggaa taacctacac agatagaaga tggtgctttg 6241 atggcacgac caacaacacc ataatggaag acagtgtgcc ggcagaggtg tggaccagac 6301 acggagagaa aagagtgctc aaaccgaggt ggatggacgc cagagtttgt tcagatcatg 6361 cggccctgaa gtcattcaag gagtttgccg ctgggaaaag aggagcggct tttggagtga 6421 tggaagccct gggaacactg ccaggacaca tgacagagag attccaggaa gccattgaca 6481 acctcgctgt gctcatgcgg gcagagactg gaagcaggcc ttacaaagcc gcggcagccc 6541 aattgccgga gaccctagag accattatgc ttttggggtt gctgggaaca gtctcgctgg 6601 gaatcttctt cgtcttgatg aggaacaagg gcatagggaa gatgggcttt ggaatggtga 6661 ctcttggggc cagcgcatgg ctcatgtggc tctcggaaat tgagccagcc agaattgcat 6721 gtgtcctcat tgttgtgttc ctattgctgg tggtgctcat acctgagcca gaaaagcaaa 6781 gatctcccca ggacaaccaa atggcaatca tcattatggt agcagtaggt cttctgggct 6841 tgattaccgc caatgaactc ggatggttgg agagaacaaa gagtgaccta agccatctaa 6901 tgggaaggag agaggagggg gcaaccatag gattctcaat ggacattgac ctgcggccag 6961 cctcagcttg ggccatctat gctgccttga caactttcat taccccagcc gtccaacatg 7021 cagtgaccac ctcatacaac aactactcct taatggcgat ggccacgcaa gctggagtgt 7081 tgtttggtat gggcaaaggg atgccattct acgcatggga ctttggagtc ccgctgctaa 7141 tgataggttg ctactcacaa ttaacacccc tgaccctaat agtggccatc attttgctcg 7201 tggcgcacta catgtacttg atcccagggc tgcaggcagc agctgcgcgt gctgcccaga 7261 agagaacggc agctggcatc atgaagaacc ctgttgtgga tggaatagtg gtgactgaca 7321 ttgacacaat gacaattgac ccccaagtgg agaaaaagat gggacaggtg ctactcatag 7381 cagtagccgt ctccagcgcc atactgtcgc ggaccgcctg ggggtggggg gaggctgggg 7441 ccctgatcac agccgcaact tccactttgt gggaaggctc tccgaacaag tactggaact 7501 cctctacagc cacttcactg tgtaacattt ttaggggaag ttacttggct ggagcttctc 7561 taatctacac agtaacaaga aacgctggct tggtcaagag acgtgggggt ggaacaggag 7621 agaccctggg agagaaatgg aaggcccgct tgaaccagat gtcggccctg gagttctact 7681 cctacaaaaa gtcaggcatc accgaggtgt gcagagaaga ggcccgccgc gccctcaagg 7741 acggtgtggc aacgggaggc catgctgtgt cccgaggaag tgcaaagctg agatggttgg 7801 tggatcgggg atacctgcag ccctatggaa aggtcattga tcttggatgt ggcagagggg 7861 gctggagtta ctacgccgcc accatccgca aagttcaaga agtgaaagga tacacaaaag 7921 gaggccctgg tcatgaagaa cccgtgttgg tgcaaagcta tgggtggaac atagtccgtc 7981 ttaagagtgg ggtggacgtc tttcatatgg cggctgagcc gtgtgacacg ttgctgtgtg 8041 acataggtga gtcatcatct agtcctgaag tggaagaagc acggacgctc agagtcctct 8101 ccatggtggg ggattggctt gaaaaaagac caggagcctt ttgcataaaa gtgttgtgcc 8161 catacaccag cactatgatg gaaaccctgg agcgactgca gcgtaggtat gggggaggac 8221 tggtcagagt gccactctcc cgcaactcta cacatgagat gtactgggtc tctggagcga 8281 aaagcaacac cataaaaagt gtgtccacca cgagccagct cctcttgggg cgcatggacg 8341 ggcctaggag gccagtgaaa tatgaggagg atgtgaatct cggctctggc acgcgggctg 8401 tggcaagctg cgctgaagct cccaacatga agatcattgg taaccgcatt gaaaggatcc 8461 gcagtgagca cgcggaaacg tggttctttg acgagaacca cccatatagg acatgggctt 8521 accatggaag ctatgaggcc cccacacaag ggtcagcgtc ctctctaata aacggggttg 8581 tcaggctcct gtcaaaaccc tgggatgtgg tgactggagt cacaggaata gccatgaccg 8641 acaccacacc gtatggtcag caaagagttt tcaaggaaaa agtggacact agggtgccag 8701 acccccaaga aggcactcgt caggttatga gcatggtctc ttcctggttg tggaaagagc 8761 taggcaaaca caaacggcca cgagtctgta ccaaagaaga gttcatcaac aaggttcgta 8821 gcaatgcagc attaggggca atatttgaag aggaaaaaga gtggaagact gcagtggaag 8881 ctgtgaacga tccaaggttc tgggctctag tggacaagga aagagagcac cacctgagag 8941 gagagtgcca gagttgtgtg tacaacatga tgggaaaaag agaaaagaaa caaggggaat 9001 ttggaaaggc caagggcagc cgcgccatct ggtatatgtg gctgggggct agatttctag 9061 agttcgaagc ccttggattc ttgaacgagg atcactggat ggggagagag aactcaggag 9121 gtggtgttga agggctggga ttacaaagac tcggatatgt cctagaagag atgagtcgta 9181 taccaggagg aaggatgtat gcagatgaca ctgctggctg ggacacccgc attagcaggt 9241 ttgatctgga gaatgaagct ctaatcacca accaaatgga gaaagggcac agggccttgg 9301 cattggccat aatcaagtac acataccaaa acaaagtggt aaaggtcctt agaccagctg 9361 aaaaagggaa aacagttatg gacattattt cgagacaaga ccaaaggggg agcggacaag 9421 ttgtcactta cgctcttaac acatttacca acctagtggt gcaactcatt cggaatatgg 9481 aggctgagga agttctagag atgcaagact tgtggctgct gcggaggtca gagaaagtga 9541 ccaactggtt gcagagcaac ggatgggata ggctcaaacg aatggcagtc agtggagatg 9601 attgcgttgt gaagccaatt gatgataggt ttgcacatgc cctcaggttc ttgaatgata 9661 tgggaaaagt taggaaggac acacaagagt ggaaaccctc aactggatgg gacaactggg 9721 aagaagttcc gttttgctcc caccatttca acaagctcca tctcaaggac gggaggtcca 9781 ttgtggttcc ctgccgccac caagatgaac tgattggccg ggcccgcgtc tctccagggg 9841 cgggatggag catccgggag actgcttgcc tagcaaaatc atatgcgcaa atgtggcagc 9901 tcctttattt ccacagaagg gacctccgac tgatggccaa tgccatttgt tcatctgtgc 9961 cagttgactg ggttccaact gggagaacta cctggtcaat ccatggaaag ggagaatgga 10021 tgaccactga ggacatgctt gtggtgtgga acagagtgtg gattgaggag aacgaccaca 10081 tggaagacaa gaccccagtt acgaaatgga cagacattcc ctatttggga aaaagggaag 10141 acttgtggtg tggatctctc atagggcaca gaccgcgcac cacctgggct gagaacatta 10201 aaaacacagt caacatggtg cgcaggatca taggtgatga agaaaagtac atggattacc 10261 tatccaccca agttcgctac ttgggtgaag aagggtctac acctggagtg ctgtaagcac 10321 caatcttaat gttgtcaggc ctgctagtca gccacagctt ggggaaagct gtgcagcctg 10381 tgaccccccc aggagaagct gggaaaccaa gcctatagtc aggccgagaa cgccatggca 10441 cggaagaagc catgctgcct gtgagcccct cagaggacac tgagtcaaaa aaccccacgc 10501 gcttggaggc gcaggatggg aaaagaaggt ggcgaccttc cccacccttc aatctggggc 10561 ctgaactgg Link to comment Share on other sites More sharing 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niman Posted March 26, 2016 Author Report Share Posted March 26, 2016 DescriptionsSequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1844718447100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1844718447100%0.099%KU761564.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1843818438100%0.099%KU820898.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1839018390100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1839018390100%0.099%KU365779.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1837518375100%0.099%KU365780.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1837518375100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1837518375100%0.099%KU312312.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1837218372100%0.099%KU365777.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1836618366100%0.099%KU501215.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome1835718357100%0.099%KU509998.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1835418354100%0.099%KJ776791.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1834518345100%0.099%KU321639.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1833618336100%0.099%KU729218.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1833018330100%0.099%KU926309.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1832118321100%0.099%KU501217.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1831818318100%0.099%KU729217.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183181831899%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1831818318100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1831818318100%0.099%KU501216.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1831218312100%0.099%KU820897.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1830918309100%0.099%KU527068.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1830018300100%0.099%KU922960.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1829418294100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1829418294100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1828518285100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1828518285100%0.099%KU853012.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1824918249100%0.099%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1814618146100%0.099%KU744693.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1814118141100%0.099%KU866423.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1801118011100%0.099%KU681081.3Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177031770399%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176581765898%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1754917549100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1741117411100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds163971639799%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1330813308100%0.089%KU720415.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1330213302100%0.089%KF268949.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133021330299%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1329713297100%0.089%KF383115.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1328613286100%0.089%LC002520.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1328413284100%0.089%KF268948.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1328113281100%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1327913279100%0.089%DQ859059.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1327713277100%0.089%KF268950.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1324813248100%0.089%KF383116.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1322713227100%0.089%AY632535.2Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132231322399%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1318713187100%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131621316299%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1296713035100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128791287997%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108901089097%0.084%KF383120.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4985498527%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4958495827%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4641464125%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4632463225%0.099%KU646827.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3443344318%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3232323217%0.099%KU740199.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2879421595%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2682268214%0.099%KJ634273.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2051205111%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2008200811%0.099%KU179098.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds173717379%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds173617369%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds173417349%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173017309%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173017309%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173017309%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds172817289%0.099%KM078929.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159315938%0.099%KJ873160.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141114117%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds137913797%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134213427%0.098%KM851038.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds133713377%0.099%KU556802.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1315131510%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds124012406%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds123112316%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds123112316%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122912296%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds121612166%0.099%KU232294.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds121412146%0.099%KU232298.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121312136%0.099%KU232292.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120412046%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118411846%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118011806%0.099%KU232291.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113911396%0.099%KU758878.1 Link to comment Share on other sites More sharing options...
niman Posted March 26, 2016 Author Report Share Posted March 26, 2016 Sequence map updatedhttps://www.google.com/maps/d/u/0/edit?mid=zv94AJqgUct4.kI8kcFySb4J0&hl=en Link to comment Share on other sites More sharing options...
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