niman Posted March 31, 2016 Report Share Posted March 31, 2016 (edited) InDRE released two partial Zika sequences from 46M in Chiapas,Mexico collected Nov 30, 2015 which exactly matches sequence from fetal brain collected from Washington DC traveler (FB-GWUH/2016), infected while on vacation (Nov 2015) that included travel to Mexico and Guatemala. Edited March 31, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted March 31, 2016 Author Report Share Posted March 31, 2016 LOCUS KU985087 755 bp RNA linear VRL 28-MAR-2016 DEFINITION Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds. ACCESSION KU985087 VERSION KU985087.1 GI:1011619245 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 755) AUTHORS Diaz-Quinonez,J.A., Vazquez-Pichardo,M., Nunez-Leon,A., Torres-Rodriguez,M.D.L.L., Escobar-Escamilla,N., Wong-Arambula,C.E., Torres-Longoria,B., Lopez-Martinez,I., Ruiz-Matus,C., Kuri-Morales,P.A. and Ramirez-Gonzalez,J.E. TITLE Molecular characterization of Zika virus in Mexico JOURNAL Unpublished REFERENCE 2 (bases 1 to 755) AUTHORS Vazquez-Pichardo,M., Nunez-Leon,A., Torres-Rodriguez,M.L., Rosales-Jimenez,C., Torres-Olmos,Y.A., Perez-Meza,R., Aparicio-Antonio,A.M., Herrera-Bautista,R.M., Wong-Arambula,C.E., Rodriguez-Maldonado,A.P., Del Mazo-Lopez,J.C., Serrano-Gutierrez,S., Escobar-Escamilla,N., Torres-Longoria,B., Gomez-Bustamante,A., Lopez-Martinez,I., Ramirez-Gonzalez,J.E. and Diaz-Quinonez,J.A. TITLE Direct Submission JOURNAL Submitted (28-MAR-2016) Biologia Molecular y Validacion de Tecnicas, Instituto de Diagnostico y Referencia Epidemiologicos (InDRE), Francisco de P. Miranda 177 Col. Lomas de Plateros, Mexico, DF 01480, Mexico COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..755 /organism="Zika virus" /mol_type="genomic RNA" /isolate="MEX/InDRE/Zika-2/2015" /isolation_source="Serum" /host="Homo sapiens; 46 years old; male" /db_xref="taxon:64320" /country="Mexico: Chiapas" /collection_date="30-Nov-2015" CDS <1..>755 /codon_start=1 /product="nonstructural protein 5" /protein_id="AMR96778.1" /db_xref="GI:1011619246" /translation="EALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSCIPGGRM YADDTAGWDTRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGK TVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTN WLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNW EEVPFCSHHFNKLHLKDGRSIVVPCRHQDELIGR" ORIGIN 1 gaagcccttg gattcttgaa cgaggatcac tggatgggga gagagaactc aggaggtggt 61 gttgaagggc tgggattaca aagactcgga tatgtcctag aagagatgag ttgcatacca 121 ggaggaagga tgtatgcaga tgacactgct ggctgggaca cccgcatcag caggtttgat 181 ctggagaatg aagctctaat caccaaccaa atggagaaag ggcacagggc cttggcattg 241 gccataatca agtacacata ccaaaacaaa gtggtaaagg tccttagacc agctgaaaaa 301 gggaaaacag ttatggacat tatttcgaga caagaccaaa gggggagcgg acaagttgtc 361 acttacgctc ttaacacatt taccaaccta gtggtgcaac tcattcggaa tatggaggct 421 gaggaagttc tagagatgca agacttgtgg ctgctgcgga ggtcagagaa agtgaccaac 481 tggttgcaga gcaacggatg ggataggctc aaacgaatgg cagtcagtgg agatgattgc 541 gttgtgaagc caattgatga taggtttgca catgccctca ggttcttgaa tgatatggga 601 aaagttagga aggacacaca agagtggaaa ccctcaactg gatgggacaa ctgggaagaa 661 gttccgtttt gctcccacca cttcaacaag ctccatctca aggacgggag gtccattgtg 721 gttccctgcc gccaccaaga tgaactgatt ggccg Link to comment Share on other sites More sharing options...
niman Posted March 31, 2016 Author Report Share Posted March 31, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds13621362100%0.0100%KU985087.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome13621362100%0.0100%KU870645.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome13571357100%0.099%KU497555.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds13571357100%0.099%KU647676.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds13571357100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds13571357100%0.099%KU501216.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds13531353100%0.099%KU991811.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome13531353100%0.099%KU926310.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome13531353100%0.099%KU926309.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds13531353100%0.099%KU729217.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds13531353100%0.099%KU820897.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome13531353100%0.099%KU509998.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome13531353100%0.099%KU321639.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds13531353100%0.099%KM078936.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds13531353100%0.099%KJ776791.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds13501350100%0.099%KM078961.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome13481348100%0.099%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome13481348100%0.099%KU940224.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome13481348100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome13481348100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome13481348100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome13481348100%0.099%KU853012.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome13481348100%0.099%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome13481348100%0.099%KU527068.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome13481348100%0.099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds13481348100%0.099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds13481348100%0.099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds13481348100%0.099%KU365777.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds13481348100%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds13461346100%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds13461346100%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds13461346100%0.099%KM078933.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds13441344100%0.099%KU955590.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds13441344100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds13441344100%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds13441344100%0.099%KU729218.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds13441344100%0.099%KU761564.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds13441344100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds13441344100%0.099%KU312312.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds13441344100%0.099%KM078929.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds1341134198%0.099%KU556802.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds13301330100%0.099%KU955589.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds13301330100%0.099%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome13301330100%0.099%KU820899.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome13301330100%0.099%KU744693.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds13301330100%0.099%KF993678.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds1328132898%0.099%KJ873160.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome13261326100%0.099%KU681081.3Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds13261326100%0.099%KU179098.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome13031303100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds13031303100%0.098%JN860885.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds12991299100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome12811281100%0.098%KU681082.3Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds1249124992%0.099%KJ873161.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds1240124091%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds1231123190%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds1229122991%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds1220122089%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds1218121890%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds1214121489%0.099%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds1211121189%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds1211121189%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds1205120588%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds1195119588%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds1191119187%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds1187118787%0.099%KU232299.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds1186118688%0.099%KU232291.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds11641164100%0.094%HQ234499.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds1047104778%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds1016101678%0.098%KM851038.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds969969100%0.088%KF268949.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome966966100%0.088%KU955594.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds966966100%0.088%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID966966100%0.088%LC002520.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds966966100%0.088%HQ234498.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome966966100%0.088%AY632535.2Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds966966100%0.088%AF013415.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds960960100%0.088%DQ859059.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds957957100%0.088%KF383121.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds957957100%0.088%KF383119.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome948948100%0.088%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome948948100%0.088%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome948948100%0.088%KU955591.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds946946100%0.088%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds946946100%0.088%KF268948.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds939939100%0.088%KF383116.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds933933100%0.087%KF383118.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds930930100%0.087%HQ234501.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds930930100%0.087%HQ234500.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds915915100%0.087%KF383117.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds901901100%0.087%KF383115.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds88888891%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds88888891%0.088%KF383086.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds85685691%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds85285291%0.087%KF383085.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds84784791%0.087%KF383106.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds84384391%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds84384391%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds84384391%0.087%KF383088.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds83883891%0.087%KF383087.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds82582591%0.086%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds82082091%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds82082091%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds81681691%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds81081091%0.086%KF383098.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds78978991%0.085%KF383084.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds78078091%0.085%KF383113.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence762762100%0.082%KF383120.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds64164191%6e-18081%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds63963991%2e-17980%KF383093.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds63663691%3e-17880%KF383095.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds63063091%1e-17680%KF383091.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds61861845%7e-173100%KU867812.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome33172353%2e-8699%KU940227.1 Link to comment Share on other sites More sharing options...
niman Posted March 31, 2016 Author Report Share Posted March 31, 2016 LOCUS KU985088 360 bp RNA linear VRL 28-MAR-2016 DEFINITION Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds. ACCESSION KU985088 VERSION KU985088.1 GI:1011619266 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 360) AUTHORS Diaz-Quinonez,J.A., Vazquez-Pichardo,M., Nunez-Leon,A., Torres-Rodriguez,M.D.L.L., Escobar-Escamilla,N., Wong-Arambula,C.E., Torres-Longoria,B., Lopez-Martinez,I., Ruiz-Matus,C., Kuri-Morales,P.A. and Ramirez-Gonzalez,J.E. TITLE Molecular characterization of Zika virus in Mexico JOURNAL Unpublished REFERENCE 2 (bases 1 to 360) AUTHORS Vazquez-Pichardo,M., Nunez-Leon,A., Torres-Rodriguez,M.L., Rosales-Jimenez,C., Torres-Olmos,Y.A., Perez-Meza,R., Aparicio-Antonio,A.M., Herrera-Bautista,R.M., Wong-Arambula,C.E., Rodriguez-Maldonado,A.P., Del Mazo-Lopez,J.C., Serrano-Gutierrez,S., Escobar-Escamilla,N., Torres-Longoria,B., Gomez-Bustamante,A., Lopez-Martinez,I., Ramirez-Gonzalez,J.E. and Diaz-Quinonez,J.A. TITLE Direct Submission JOURNAL Submitted (28-MAR-2016) Biologia Molecular y Validacion de Tecnicas, Instituto de Diagnostico y Referencia Epidemiologicos (InDRE), Francisco de P. Miranda 177 Col. Lomas de Plateros, Mexico, DF 01480, Mexico COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..360 /organism="Zika virus" /mol_type="genomic RNA" /isolate="MEX/InDRE/Zika-2/2015" /isolation_source="Serum" /host="Homo sapiens; 46 years old; male" /db_xref="taxon:64320" /country="Mexico: Chiapas" /collection_date="30-Nov-2015" CDS <1..>360 /codon_start=2 /product="envelope protein" /protein_id="AMR96779.1" /db_xref="GI:1011619267" /translation="RCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTC AKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSP RAEATLGGFGSLGLDCEP" ORIGIN 1 ccgctgccca acacaaggtg aagcctacct tgacaagcaa tcagacactc aatatgtctg 61 caaaagaacg ttagtggaca gaggctgggg aaatggatgt ggactttttg gcaaagggag 121 cctggtgaca tgcgctaagt ttgcatgctc caagaaaatg accgggaaga gcatccagcc 181 agagaatctg gagtaccgga taatgctgtc agttcatggc tcccagcaca gtgggatgat 241 cgttaatgac acaggacatg aaactgatga gaatagagcg aaggttgaga taacgcccaa 301 ttcaccaaga gccgaagcca ccctgggggg ttttggaagc ctaggacttg attgtgaacc Link to comment Share on other sites More sharing options...
niman Posted March 31, 2016 Author Report Share Posted March 31, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds650650100%0.0100%KU991811.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds650650100%0.0100%KU985088.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome650650100%0.0100%KU940228.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome650650100%0.0100%KU940224.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds650650100%0.0100%KU955589.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome650650100%0.0100%KU870645.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome650650100%0.0100%KU926309.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds650650100%0.0100%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome650650100%0.0100%KU820899.2Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds650650100%0.0100%KU729217.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds650650100%0.0100%KU729218.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome650650100%0.0100%KU681081.3Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome650650100%0.0100%KU527068.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds650650100%0.0100%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds650650100%0.0100%KU501216.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds650650100%0.0100%KJ634273.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds650650100%0.0100%KJ776791.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds645645100%0.099%KU955590.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome645645100%0.099%KU926310.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome645645100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome645645100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome645645100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome645645100%0.099%KU853012.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome645645100%0.099%KU497555.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds645645100%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds645645100%0.099%KU646827.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds645645100%0.099%KU647676.1Select seq gb|KU509998.1|Zika virus strain Haiti/1225/2014, complete genome645645100%0.099%KU509998.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds645645100%0.099%KU365778.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds645645100%0.099%KU312315.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds645645100%0.099%KU312314.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome645645100%0.099%KU321639.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds641641100%3e-18099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds641641100%3e-18099%KU740184.2Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds641641100%3e-18099%KU820897.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds641641100%3e-18099%KU761564.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome641641100%3e-18099%KU707826.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome641641100%3e-18099%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds641641100%3e-18099%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds641641100%3e-18099%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds641641100%3e-18099%KU365777.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds641641100%3e-18099%KU312313.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds641641100%3e-18099%KU312312.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds641641100%3e-18099%EU545988.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome636636100%1e-17899%KU955593.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome636636100%1e-17899%KU681082.3Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome636636100%1e-17899%KU744693.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds636636100%1e-17899%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds632632100%1e-17799%KF993678.1 Link to comment Share on other sites More sharing options...
Recommended Posts
Please sign in to comment
You will be able to leave a comment after signing in
Sign In Now