niman Posted August 7, 2015 Report Share Posted August 7, 2015 (edited) University of Florida released full D68 sequence from December 1, 2014 Haiti collection, which matched novel sub-clade linked to acute flaccid paralysis. VP1 sequence identical to NY153. Edited August 7, 2015 by niman Link to comment Share on other sites More sharing options...
niman Posted August 7, 2015 Author Report Share Posted August 7, 2015 LOCUS KT266905 7332 bp ss-RNA linear VRL 04-AUG-2015 DEFINITION Enterovirus D68 isolate EV-D68/Haiti/1/2014, complete genome. ACCESSION KT266905 VERSION KT266905.1 GI:908273950 KEYWORDS . SOURCE Enterovirus D68 (EV-D68) ORGANISM Enterovirus D68 Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Enterovirus; Enterovirus D. REFERENCE 1 (bases 1 to 7332) AUTHORS Lednicky,J.A., Okech,B.A., Morris,J.G. Jr., Beau De Rochars,V.M., Elbadry,M.A., White,S.K. and Loeb,J.C. TITLE Enterovirus D68 strain Haiti 1-2014 from the blood of a Haitian child with febrile illness JOURNAL Unpublished REFERENCE 2 (bases 1 to 7332) AUTHORS Lednicky,J.A., Okech,B.A., Morris,J.G. Jr., Beau De Rochars,V.M., Elbadry,M.A., White,S.K. and Loeb,J.C. TITLE Direct Submission JOURNAL Submitted (09-JUL-2015) Environmental and Global Health, University of Florida - Gainesville, 1225 Center Drive, Room 2146, Gainesville, FL 32610, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..7332 /organism="Enterovirus D68" /mol_type="genomic RNA" /isolate="EV-D68/Haiti/1/2014" /host="Homo sapiens" /db_xref="taxon:42789" /country="Haiti" /collection_date="01-Dec-2014" /note="passage details: A549 and Vero E6 cells" 5'UTR 1..697 CDS 698..7264 /codon_start=1 /product="polyprotein" /protein_id="AKT07950.1" /db_xref="GI:908273951" /translation="MGAQVTRQQTGTHENANIATNGSHITYNQINFYKDSYAASASKQ DFSQDPSKFTEPVVEGLKAGAPVLKSPSAEACGYSDRVLQLKLGNSAIVTQEAANYCC AYGEWPNYLPDHEAVAIDKPTQPETATDRFYTLKSVKWETGSTGWWWKLPDALNNIGM FGQNVQHHYLYRSGFLIHVQCNATKFHQGALLVVAIPEHQRGAHNTNTSPGFDDIMKG EEGGTFNHPYVLDDGTSLACATIFPHQWINLRTNNSATIVLPWMNAAPMDFPLRHNQW TLAIIPVVPLGTRTTSSMVPITVSIAPMCCEFNGLRHAITQGVPTYLLPGSGQFLTTD DHSSAPALPCFNPTPEMHIPGQVRNMLEVVQVESMMEINNTESAVGMERLKVDISALT DVDQLLFNIPLDIQLDGPLRNTLVGNISRYYTHWSGSLEMTFMFCGSFMATGKLILCY TPPGGSCPTTRETAMLGTHIVWDFGLQSSVTLIIPWISGSHYRMFNNDAKSTNANVGY VTCFMQTNLIVPSESSDTCSLIGFIAAKDDFSLRLMRDSPDIGQLDHLHAAEAAYQIE SIIKTATDTVKSEINAELGVVPSLNAVETGATSNTEPEEAIQTRTVINQHGVSETLVE NFLSRAALVSKRSFEYKDHTSSAAQADKNFFKWTINTRSFVQLRRKLELFTYLRFDAE ITILTTVAVNGSSNNTYVGLPDLTLQAMFVPTGALTPEKQDSFHWQSGSNASVFFKIS DPPARITIPFMCINSAYSVFYDGFAGFEKNGLYGINPADTIGNLCVRIVNEHQPVGFT VTVRVYMKPKHIKAWAPRPPRTLPYMSIANANYKGKERAPNALSAIIGNRDSVKTMPH NIVNTGPGFGGVFVGSFKIINYHLATTEERQSAIYVDWQSDVLVTPIAAHGRHQIARC KCNTGVYYCRHKNRSYPICFEGPGIQWIEQNEYYPARYQTNVLLAVGPAEAGDCGGLL VCPHGVIGLLTAGGGGIVAFTDIRNLLWLDTDAMEQGITDYIQNLGNAFGAGFTETIS NKAKEVQDMLIGESSLLEKLLKALIKIISALVIVIRNSEDLVTVTATLALLGCHDSPW SYLKQKVCSYLGIPYVPRQGESWLKKFTEACNALRGLDWLSQKIDKFINWLKTKILPE AREKYEFVQRLKQLPVIENQVSTIEHSCPTTEQQQALFNNVQYYSHYCRKYAPLYAVE AKRVVALEKKINNYIQFKSKSRIEPVCLIIHGSPGTGKSVASNLIARAITEKLGGDIY SLPPDPKYFDGYKQQTVVLMDDLMQNPDGNDISMFCQMVSTVDFIPPMASLEEKGTLY TSPFLIATTNAGSIHAPTVSDSKALSRRFKFDVDIEVTDSYKDSNKLDMSRAVEMCKP DGCAPTNYRRCCPLICGKAIQFRDRRTNARSTIDMLVTDIIKEYRTRNSTQDKLEALF QGPPQFKEIKISVTPDTPAPDAINDLLRSVDSQEVRDYCQKKGWIVVHPSNELIVEKH ISRAFITLQAIATFVSIAGVVYVIYKLFAGIQGPYTGIPNPKPKVPSLRTAKVQGPGF DFAQAIMKKNTVIARTEKGEFTMLGVYDRVAVIPTHASVGETIYINDVETKVLDACAL RDLTDTNLEITIVKLDRNQKFRDIRHFLPRYEDDYNDAVLSVHTSKFPNMYIPVGQVT NYGFLNLGGTPTHRILMYNFPTRAGQCGGVVTTTGKVIGIHVGGNGAQGFAAMLLHSY FTDTQGEIVSSEKSGVCINAPAKTKLQPSVFHQVFEGSKEPAVLNPKDPRLKTDFEEA IFSKYTGNKIMLMDEYMEEAVDHYVGCLEPLDISVDPIPLESAMYGMDGLEALDLTTS AGFPYLLQGKKKRDIFNRHTRDTSEMTKMLEKYGVDLPFVTFVKDELRSREKVEKGKS RLIEASSLNDSVAMRVAFGNLYATFHNNPGTATGSAVGCDPDIFWSKIPILLDGEIFA FDYTGYDASLSPVWFACLKKVLIKLGYTHQTSFIDYLCHSVHLYKDKKYIVNGGMPSG SSGTSIFNTMINNIIIRTLLIRVYKGIDLDQFKMIAYGDDVIASYPHKIDPGLLAEAG KQYGLVMTPADKGTSFIDTNWENVTFLKRYFRADDQYPFLIHPVMPMKEIHESIRWTK DPRNTQDHVRSLCYPAWHNGEEAYNEFCRKIRSVPVGRALTLPAYSSLRRKWLDSF" mat_peptide 698..904 /product="VP4 polyprotein" mat_peptide 905..1648 /product="VP2 polypeptide" mat_peptide 1649..2371 /product="VP3 polypeptide" mat_peptide 2372..3274 /product="VP1 polypeptide" mat_peptide 3275..3721 /product="P2A protease" mat_peptide 3722..4018 /product="p2B polypeptide" mat_peptide 4019..5011 /product="p2C polypeptide" mat_peptide 5012..5275 /product="p3A polypeptide" mat_peptide 5276..5341 /product="VPg polypeptide" mat_peptide 5342..5881 /product="p3C protease" mat_peptide 5882..7261 /product="p3D RNA polymerase" 3'UTR 7265..7332 ORIGIN 1 taaaacagcc ttggggttgt tcccactcca agggcccacg tggcggctag tactctggta 61 cttcggtacc tttgtacgcc tgttttatct cccttcccaa tgtaacttag aagttcttaa 121 atcaatgctc aataggtggg gcgcaaacca gcgctctcat gagcaagcac tcctgtctcc 181 ccggtgaggt tgtataaact gttcccacgg ttgaaaacaa cctatccgtt atccgctata 241 gtacttcgag aaacctagta ccacctttgg attgttgacg cgttgcgttc agcacactaa 301 cccgtgtgta gcttgggtcg atgagtctgg acatacctca ctggcgacag tggtccaggc 361 tgcgttggcg gcctactcat ggtgaaagcc atgagacgct agacatgaac aaggtgtgaa 421 gagtctattg agctactata gagtcctccg gcccctgaat gcggctaatc ctaaccatgg 481 agcaagtgct cacaggccag tgagttgctt gtcgtaatgc gcaagtccgt ggcggaaccg 541 actactttgg gtgtccgtgt ttcacttttt acttttatga ctgcttatgg tgacaatttg 601 atattgttac catttagctt gtcaaatcaa ttgcaaaaga tcctaaatct tatttatcaa 661 cttgcatctt gataacttta atttgaaaat tttaacaatg ggagctcagg ttactagaca 721 acaaactggc actcatgaaa atgccaacat tgccacaaat ggatctcata tcacatacaa 781 tcagataaac ttttacaagg atagttatgc ggcttcagcc agcaagcagg atttttcaca 841 ggacccatca aaattcactg aaccagtagt ggaaggttta aaagcagggg cgccagtttt 901 gaaatctcct agtgctgagg catgtggcta cagtgataga gtattacagc tcaaattagg 961 aaattcagct attgtcaccc aggaagcagc gaactactgc tgcgcttatg gtgaatggcc 1021 caattactta ccagaccatg aagcagtagc cattgataaa cctacacaac cagaaactgc 1081 tacagataga ttctacactt tgaaatcagt caaatgggaa actggaagca caggatggtg 1141 gtggaaacta cccgatgcac taaataatat aggcatgttt ggacagaatg tacagcatca 1201 ctacctatat agatctggtt tcttgattca tgtgcagtgt aatgccacaa aattccatca 1261 aggtgcctta ttagtggtag caattccaga acatcagagg ggagcgcaca acaccaacac 1321 tagcccaggg tttgatgata taatgaaagg tgaagaagga gggaccttca atcatccata 1381 tgtccttgat gatggaacat cattggcttg tgcgacgata tttccacatc agtggataaa 1441 tctgagaacc aacaattcag caacaattgt tcttccctgg atgaatgctg ctccaatgga 1501 tttcccactt agacataatc agtggacgct agcaataata ccagtggtgc cattaggcac 1561 acgtacaaca tcaagtatgg tcccaataac agtttcaatc gctccaatgt gttgtgagtt 1621 taatggactt agacacgcca ttactcaagg tgtcccaaca taccttttac ccggctcggg 1681 acaattccta acaactgatg atcatagctc tgcaccagct ctcccgtgtt tcaacccaac 1741 tccagaaatg catatcccag ggcaggtccg taacatgcta gaagtggtcc aagtggaatc 1801 aatgatggag attaataaca cagaaagtgc agttggcatg gagcgtctta aggttgacat 1861 atcagcattg acagatgtcg atcaattgtt attcaacatt ccactggaca tacagttgga 1921 tgggccactt agaaacactt tagtaggaaa catatctaga tattacactc attggtctgg 1981 atccctagaa atgacgttta tgttttgtgg cagcttcatg gcaacgggaa aattaatcct 2041 gtgctatact cctccaggtg gatcatgccc gacaaccaga gagaccgcca tgttaggtac 2101 acatattgtt tgggattttg gattacaatc tagtgtaacc ctgataatac cttggattag 2161 tggatcccac tacaggatgt ttaataatga tgctaagtca actaatgcca acgttggcta 2221 tgtcacttgt tttatgcaga ccaatctgat agtccccagt gaatcctctg acacgtgttc 2281 tttgataggg ttcatagcag caaaagatga tttctccctc agattaatga gagacagccc 2341 tgacattgga caactagacc atttacatgc agcagaggca gcctaccaga tcgagagcat 2401 tatcaaaaca gcaaccgaca ctgtgaaaag tgagattaat gctgaacttg gtgtggtccc 2461 tagcttaaat gcagttgaaa caggtgcaac ctctaacact gaaccagaag aagccataca 2521 aactcgcaca gtgataaatc agcacggtgt atccgagact ctagtggaga attttctcag 2581 tagagcagct ttggtatcaa agagaagttt tgaatacaaa gatcatactt cgtctgcagc 2641 acaagcagac aagaactttt tcaaatggac aattaacacc agatcctttg tacagttaag 2701 aagaaaatta gaattattca cataccttag atttgatgct gagatcacta tactcacaac 2761 tgtagcagtg aatggtagta gtaataatac atacgtgggt cttcctgact tgacacttca 2821 agcaatgttt gtacccactg gtgctcttac cccagaaaag caggactcat tccactggca 2881 gtcaggcagt aatgctagtg tattctttaa aatctctgac cccccagcca gaataaccat 2941 accttttatg tgcattaact cagcatactc agttttttat gatggctttg ccggatttga 3001 gaaaaacggt ctgtatggaa taaatccagc tgatactatt ggtaacttat gtgttagaat 3061 agtgaatgaa caccaaccag ttggtttcac agtgaccgtt agggtttaca tgaagcctaa 3121 acacataaaa gcatgggcac cacgaccacc acgaactctg ccatatatga gtattgcaaa 3181 tgcaaattac aaaggtaaag aaagagcacc aaatgcgctc agtgctataa ttggcaatag 3241 agacagtgtc aaaaccatgc ctcataatat agtgaacact ggtccaggct tcggaggggt 3301 ttttgtaggg tctttcaaaa taatcaacta tcacttggcc actacagaag agagacagtc 3361 agctatctat gtggattggc aatcagacgt cttggttacc cccattgctg ctcatggaag 3421 gcaccaaata gcaagatgca agtgcaacac aggggtttac tattgtaggc acaaaaacag 3481 aagttacccg atttgctttg aaggcccagg gattcaatgg attgaacaaa atgaatatta 3541 cccagcaagg taccagacca atgtactttt ggcagttggt cctgcggaag caggagattg 3601 cggtggttta ctagtttgtc cgcatggggt aatcggtctt cttacagcag gagggggtgg 3661 aattgtagct ttcactgata tcaggaattt gctatggtta gatactgatg ctatggaaca 3721 aggcattact gattatattc aaaatcttgg taatgccttt ggagcaggat ttacagaaac 3781 aatctctaat aaagccaagg aagtgcaaga tatgctaatt ggagagagtt cactattaga 3841 aaaattgtta aaagctctaa tcaaaatcat atcagcatta gtaattgtaa tcagaaactc 3901 agaagattta gtcacagtca cagccacact agcattgttg ggatgccatg attcaccatg 3961 gagctacttg aaacagaagg tatgttcata cttaggtatt ccttatgtac ctagacaggg 4021 tgaatcgtgg cttaagaagt tcacagaggc atgcaatgct cttagaggtc tggattggct 4081 atcgcaaaag atagataaat tcatcaactg gcttaaaacc aaaatattac cagaagctag 4141 ggagaaatat gaatttgtgc aaaggctcaa acagttaccg gtgatagaaa accaagttag 4201 tacaatcgag catagctgcc caacaacaga acaacaacag gccttattca acaatgtcca 4261 atactattca cactactgta gaaagtacgc accactttac gcagtggaag caaagagggt 4321 agtagctctt gaaaagaaaa taaacaacta catccagttc aagtccaaat ctcgcattga 4381 accggtttgt ttaataatac atggctctcc aggaactggc aagtcagtgg cttcaaattt 4441 aattgccagg gctatcacag agaaattggg gggggacatt tattccttgc ctccagaccc 4501 taaatatttt gatggataca aacagcaaac agtggtcctc atggatgatt taatgcaaaa 4561 tccagatggg aatgacatat ctatgttctg ccaaatggtc tccactgtag atttcatacc 4621 cccaatggct agtttggagg aaaaaggaac tctttacacc agtccatttt taatagctac 4681 taccaatgct ggttcaatac atgcaccaac tgtatcagac tcaaaggctt tgtcacgcag 4741 atttaaattt gacgtggaca ttgaagtcac agattcatac aaggactcaa ataaattgga 4801 tatgtcaagg gcagtcgaga tgtgcaaacc agacggctgt gcccccacca attacagaag 4861 atgctgccca ttgatctgtg gaaaggctat ccaattcaga gatcgcagaa ctaatgcaag 4921 atccactatt gatatgctag taactgatat tataaaggaa tatagaacca gaaacagtac 4981 acaggacaag ctagaggctc tgtttcaggg gcctccacag tttaaagaga tcaaaatttc 5041 agtcacccca gatacaccag ctcctgatgc tataaatgac cttcttaggt cagtggattc 5101 tcaagaagtt agggattatt gccaaaagaa aggatggatt gtagtacacc catcaaatga 5161 gctaatagta gaaaaacaca ttagtagagc ttttatcact ctacaagcca ttgccacctt 5221 tgtatcaata gctggtgtag tttatgttat atacaaactt tttgctggca ttcagggtcc 5281 atacacagga atccccaatc ctaaacctaa agtaccctct ctcagaacag ctaaagtgca 5341 aggaccaggg ttcgattttg cacaagccat aatgaagaaa aataccgtca ttgcaaggac 5401 tgaaaagggt gagttcacca tgctgggtgt atatgatagg gtagcggtca tccccacaca 5461 cgcatctgtt ggagaaacca tttacattaa tgatgtagag actaaagttt tagatgcgtg 5521 tgcacttaga gacttgactg atacaaactt agagataacc atagtcaaat tagaccgtaa 5581 ccaaaaattt agagatatca gacattttct gcccagatat gaggatgatt acaatgacgc 5641 tgtgcttagc gtacatacat caaaattccc aaatatgtat atcccagttg gacaagtcac 5701 caattatggc ttcttgaacc taggtggtac accgacgcac cgcattttaa tgtataactt 5761 cccaacaaga gctggtcagt gtggtggtgt ggtgacaact acaggtaagg tgataggaat 5821 acatgtaggt ggaaatggag ctcaaggatt tgcagcaatg ctactacact cttactttac 5881 cgatacacaa ggtgagatag ttagtagtga aaagagtggg gtgtgcatta acgcaccggc 5941 aaagactaaa ctccaaccca gtgttttcca tcaagttttt gaaggttcaa aggaaccagc 6001 agttctcaat ccaaaagatc ctaggcttaa aacagatttc gaggaggcca ttttctcaaa 6061 gtacacaggt aacaaaatca tgttaatgga tgagtacatg gaagaggcag tggatcatta 6121 tgtggggtgt ttagaaccat tagacatcag tgtggatccc atacccctgg aaagtgccat 6181 gtatggaatg gatggccttg aggcattaga cttaactacc agtgcaggat tcccttactt 6241 actacaaggg aagaagaaaa gggatatatt taatagacat actagagaca ccagtgaaat 6301 gacaaaaatg ttagagaaat atggagttga cctacctttt gtaacctttg taaaagatga 6361 gcttagatca agagaaaaag ttgaaaaagg gaaatcacgc ctgattgagg ccagttcctt 6421 gaatgactca gttgctatga gagttgcctt tggaaacctt tacgccacat ttcacaacaa 6481 tccaggtaca gcaactggta gtgcagttgg ttgtgatcca gatatatttt ggtcaaagat 6541 ccctattttg ttagatggag aaatctttgc ttttgactac actggttatg atgctagttt 6601 gtcaccagtg tggtttgcct gtttaaagaa agttctaatt aagttaggtt acacacatca 6661 aacgtctttt atagattatt tgtgtcattc agtacattta tataaggaca aaaagtacat 6721 agttaatggt ggaatgccct ctggttcttc aggcaccagc atattcaaca ctatgatcaa 6781 caatataatc ataagaactt tattaattag ggtttacaaa ggcatagacc tggaccagtt 6841 caaaatgatt gcctatgggg atgatgttat tgctagctac ccacataaga ttgatccagg 6901 tttgctggca gaagcaggta aacagtatgg attagtaatg acaccagcag acaaaggaac 6961 cagttttatt gacacaaatt gggaaaatgt aactttctta aaaagatatt tcagagcaga 7021 tgatcaatac ccctttctca tacatccagt gatgccaatg aaagagatac atgaatctat 7081 tagatggact aaagatccca gaaacacaca ggatcatgtt aggtctttgt gctaccccgc 7141 atggcataat ggagaggagg cttataatga attttgcaga aaaatcagaa gtgtgcctgt 7201 gggaagagca ttgacactac ctgcatactc tagtcttaga cggaaatggt tagattcgtt 7261 ctagacaact ctaattgaaa cccaagttat agttactttc atttagaggt aaattttggc 7321 ccccaagtgg cc Link to comment Share on other sites More sharing options...
niman Posted August 7, 2015 Author Report Share Posted August 7, 2015 Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KP745755.1|Enterovirus D68 isolate NY153, complete genome17121712100%0.0100%KP745755.1Select seq gb|KM851228.1|Enterovirus D68 strain US/MO/14-18950, partial genome17011701100%0.099%KM851228.1Select seq gb|KP745754.1|Enterovirus D68 isolate NY130 polyprotein gene, complete cds16961696100%0.099%KP745754.1Select seq gb|KP745751.1|Enterovirus D68 isolate NY120, complete genome16961696100%0.099%KP745751.1Select seq gb|KP745761.1|Enterovirus D68 isolate NY305 polyprotein gene, complete cds16901690100%0.099%KP745761.1Select seq gb|KP745757.1|Enterovirus D68 isolate NY210, complete genome16901690100%0.099%KP745757.1Select seq gb|KP322752.1|Enterovirus D68 strain US/CA/14-6089 polyprotein gene, partial cds16901690100%0.099%KP322752.1Select seq gb|KP100793.1|Enterovirus D68 strain US/CO/14-94 polyprotein gene, complete cds16901690100%0.099%KP100793.1Select seq gb|KP100792.1|Enterovirus D68 strain US/CA/14-6092 polyprotein gene, partial cds16901690100%0.099%KP100792.1Select seq gb|KP745758.1|Enterovirus D68 isolate NY263 polyprotein gene, complete cds1688168899%0.099%KP745758.1Select seq gb|KP114662.1|Enterovirus D68 isolate EV68_Alberta17390_2014 polyprotein gene, partial cds16851685100%0.099%KP114662.1Select seq gb|KP745770.1|Enterovirus D68 isolate NY77 polyprotein gene, complete cds16851685100%0.099%KP745770.1Select seq gb|KP745765.1|Enterovirus D68 isolate NY326 polyprotein gene, complete cds16851685100%0.099%KP745765.1Select seq gb|KP745760.1|Enterovirus D68 isolate NY278, complete genome16851685100%0.099%KP745760.1Select seq gb|KP745759.1|Enterovirus D68 isolate NY275 polyprotein gene, complete cds16851685100%0.099%KP745759.1Select seq gb|KP745753.1|Enterovirus D68 isolate NY126 polyprotein gene, complete cds16851685100%0.099%KP745753.1Select seq gb|KP126909.1|Enterovirus D68 strain US/CA/14-R1 polyprotein gene, partial cds16851685100%0.099%KP126909.1Select seq gb|KM892502.1|Enterovirus D68 isolate CA/AFP/v14T04344 VP1 capsid protein gene, partial cds16851685100%0.099%KM892502.1Select seq gb|KP745766.1|Enterovirus D68 isolate NY328, complete genome16791679100%0.099%KP745766.1Select seq gb|KP745764.1|Enterovirus D68 isolate NY316, complete genome16791679100%0.099%KP745764.1Select seq gb|KP100796.1|Enterovirus D68 strain US/CA/14-6100 polyprotein gene, partial cds16791679100%0.099%KP100796.1Select seq gb|KP100795.1|Enterovirus D68 strain US/CA/14-6103SIB polyprotein gene, complete cds16791679100%0.099%KP100795.1Select seq gb|KM851227.1|Enterovirus D68 strain US/MO/14-18949, partial genome16791679100%0.099%KM851227.1Select seq gb|KM851226.1|Enterovirus D68 strain US/MO/14-18948, partial genome16791679100%0.099%KM851226.1Select seq gb|KP745763.1|Enterovirus D68 isolate NY314 polyprotein gene, complete cds16741674100%0.099%KP745763.1Select seq gb|KP745752.1|Enterovirus D68 isolate NY124 polyprotein gene, complete cds16681668100%0.099%KP745752.1Select seq gb|KP126910.1|Enterovirus D68 strain US/CA/14-6067 polyprotein gene, partial cds16681668100%0.099%KP126910.1Select seq gb|KM851225.1|Enterovirus D68 strain US/MO/14-18947, partial genome16681668100%0.099%KM851225.1Select seq gb|KP745762.1|Enterovirus D68 isolate NY309 polyprotein gene, complete cds16631663100%0.099%KP745762.1Select seq gb|KM881710.2|Enterovirus D68 strain EV-D68_STL_2014_12 polyprotein gene, complete cds16571657100%0.099%KM881710.2Select seq gb|KP126908.1|Enterovirus D68 strain US/CA/14-R2 polyprotein gene, partial cds16571657100%0.099%KP126908.1Select seq gb|KP745767.1|Enterovirus D68 isolate NY329, complete genome16241624100%0.098%KP745767.1Select seq gb|KP153542.1|Enterovirus D68 strain ITA/25663/14 VP1 protein gene, partial cds16241624100%0.098%KP153542.1Select seq gb|KP126912.1|Enterovirus D68 strain US/CO/14-86 polyprotein gene, partial cds16241624100%0.098%KP126912.1Select seq gb|KP745756.1|Enterovirus D68 isolate NY160 polyprotein gene, complete cds16181618100%0.098%KP745756.1Select seq gb|KP153546.1|Enterovirus D68 strain ITA/25861/14 VP1 protein gene, partial cds16181618100%0.098%KP153546.1Select seq gb|KP153544.1|Enterovirus D68 strain ITA/25700/14 VP1 protein gene, partial cds16181618100%0.098%KP153544.1Select seq gb|KP153545.1|Enterovirus D68 strain ITA/25702/14 VP1 protein gene, partial cds16131613100%0.098%KP153545.1Select seq gb|KP153539.1|Enterovirus D68 strain ITA/23987/14 VP1 protein gene, partial cds16131613100%0.098%KP153539.1Select seq gb|KP114663.1|Enterovirus D68 isolate EV68_Alberta4693_2014 polyprotein gene, partial cds16071607100%0.098%KP114663.1Select seq gb|KP100794.1|Enterovirus D68 strain US/CO/13-60 polyprotein gene, complete cds16071607100%0.098%KP100794.1Select seq gb|KP153543.1|Enterovirus D68 strain ITA/25686/14 VP1 protein gene, partial cds16021602100%0.098%KP153543.1Select seq gb|KP153541.1|Enterovirus D68 strain ITA/25571/14 VP1 protein gene, partial cds16021602100%0.098%KP153541.1Select seq gb|KM892498.1|Enterovirus D68 isolate CA/AFP/v12T04950 VP1 capsid protein gene, partial cds15981598100%0.098%KM892498.1Select seq gb|KP153540.1|Enterovirus D68 strain ITA/25185/14 VP1 protein gene, partial cds15961596100%0.098%KP153540.1Select seq gb|KM892499.1|Enterovirus D68 isolate CA/AFP/v12T00346, partial genome15911591100%0.098%KM892499.1Select seq gb|KC763162.1|Human enterovirus 68 strain ITA/20528/12 VP1 gene, partial cds1591159199%0.098%KC763162.1Select seq gb|KM361523.1|Enterovirus sp. isolate CU134 polyprotein gene, partial cds15801580100%0.097%KM361523.1Select seq gb|KM361524.1|Enterovirus sp. isolate CU171 polyprotein gene, partial cds15741574100%0.097%KM361524.1Select seq gb|KM892501.1|Enterovirus D68 isolate CA/AFP/11-1767, complete genome15681568100%0.097%KM892501.1Select seq gb|KT280503.1|Enterovirus D68 isolate 2011-21186, complete genome1563156399%0.097%KT280503.1Select seq gb|KT280504.1|Enterovirus D68 isolate 2013-0720-6, complete genome1535153599%0.097%KT280504.1Select seq gb|KP729107.1|Enterovirus D68 isolate L2630003743 VP1 gene, partial cds1522152290%0.099%KP729107.1Select seq gb|KR108025.1|Enterovirus D68 isolate L2640016584 VP1 gene, partial cds1517151790%0.099%KR108025.1Select seq gb|KR108022.1|Enterovirus D68 isolate L2640002876 VP1 gene, partial cds1509150989%0.099%KR108022.1Select seq gb|KT280500.1|Enterovirus D68 isolate 2014-R0672, complete genome15071507100%0.096%KT280500.1Select seq gb|KT280496.1|Enterovirus D68 isolate 2014-R1357, complete genome15021502100%0.096%KT280496.1Select seq gb|KP114664.1|Enterovirus D68 isolate EV68_Alberta2985_2014 polyprotein gene, partial cds15021502100%0.096%KP114664.1Select seq gb|KP240936.1|Enterovirus D68 isolate Beijing-R0132, complete genome14961496100%0.096%KP240936.1Select seq gb|KT280499.1|Enterovirus D68 isolate 2014-R970, complete genome14911491100%0.096%KT280499.1Select seq gb|KT280498.1|Enterovirus D68 isolate 2014-R1011, complete genome14741474100%0.095%KT280498.1Select seq emb|LN681327.1|Enterovirus D68 partial 1D gene for VP1 protein, isolate CF287062_FRA141474147488%0.099%LN681327.1Select seq dbj|AB614427.1|Human enterovirus 68 gene for polyprotein, VP1 protein region, strain: 2035-Yamagata-20101467146799%0.095%AB614427.1Select seq gb|KR108023.1|Enterovirus D68 isolate L2640003884 VP1 gene, partial cds1458145887%0.099%KR108023.1Select seq dbj|AB614430.1|Human enterovirus 68 gene for polyprotein, VP1 protein region, strain: 2082-Yamagata-20101456145699%0.095%AB614430.1Select seq dbj|AB614409.1|Human enterovirus 68 gene for polyprotein, VP1 protein region, strain: 1975-Yamagata-20101456145699%0.095%AB614409.1Select seq emb|LN681337.1|Enterovirus D68 partial 1D gene for VP1 protein, isolate CF311065_FRA141454145487%0.099%LN681337.1Select seq gb|KT280497.1|Enterovirus D68 isolate 2014-R1153, complete genome14521452100%0.095%KT280497.1Select seq dbj|AB861414.1|Enterovirus D68 VP1 gene for VP1 polyprotein, partial cds, isolate: TTa-11-Ph344_VP11450145099%0.095%AB861414.1Select seq dbj|AB614433.1|Human enterovirus 68 gene for polyprotein, VP1 protein region, strain: 2086-Yamagata-20101450145099%0.095%AB614433.1Select seq gb|KC763167.1|Human enterovirus 68 strain ITA/23695/12 VP1 gene, partial cds1445144598%0.095%KC763167.1Select seq dbj|AB614437.1|Human enterovirus 68 gene for polyprotein, VP1 protein region, strain: 2161-Yamagata-20101445144599%0.095%AB614437.1Select seq gb|KM851230.1|Enterovirus D68 strain US/IL/14-18952, partial genome1439143999%0.095%KM851230.1Select seq gb|KM851229.1|Enterovirus D68 strain US/KY/14-18951, partial genome1439143999%0.095%KM851229.1Select seq gb|KP114665.1|Enterovirus D68 isolate EV68_Alberta17789_2014 polyprotein gene, partial cds1434143499%0.095%KP114665.1Select seq gb|KP745769.1|Enterovirus D68 isolate NY74 polyprotein gene, partial cds1434143499%0.095%KP745769.1Select seq gb|KP745768.1|Enterovirus D68 isolate NY73 polyprotein gene, complete cds1434143499%0.095%KP745768.1Select seq gb|KC763164.1|Human enterovirus 68 strain ITA/22516/12 VP1 gene, partial cds1423142398%0.095%KC763164.1Select seq gb|KC763169.1|Human enterovirus 68 strain ITA/24518/12 VP1 gene, partial cds1411141198%0.094%KC763169.1Select seq gb|JX101799.1|Human enterovirus 68 strain SA563 from South Africa VP1 gene, partial cds1406140699%0.094%JX101799.1Select seq gb|AY426493.1|Human enterovirus 68 strain MO00 polyprotein gene, partial cds1400140099%0.094%AY426493.1Select seq emb|LN681332.1|Enterovirus D68 partial 1D gene for VP1 protein, isolate CF298032_FRA141395139588%0.097%LN681332.1Select seq gb|AY426495.1|Human enterovirus 68 strain TX02-1 polyprotein gene, partial cds1389138999%0.094%AY426495.1Select seq gb|AY426494.1|Human enterovirus 68 strain WI00 polyprotein gene, partial cds1389138999%0.094%AY426494.1Select seq gb|JX101795.1|Human enterovirus 68 strain SA402 from South Africa VP1 gene, partial cds1384138499%0.094%JX101795.1Select seq gb|KJ472886.1|Enterovirus D68 isolate HEV196011 VP1 gene, partial cds1352135296%0.094%KJ472886.1Select seq gb|AY426496.1|Human enterovirus 68 strain TX02-2 polyprotein gene, partial cds1349134999%0.093%AY426496.1Select seq gb|AY426491.1|Human enterovirus 68 strain MD02-1 polyprotein gene, partial cds1345134599%0.093%AY426491.1Select seq gb|AY426492.1|Human enterovirus 68 strain MD02-2 polyprotein gene, partial cds1339133999%0.093%AY426492.1Select seq emb|LN681324.1|Enterovirus D68 partial 1D gene for VP1 protein, isolate CF276018_FRA141328132892%0.095%LN681324.1Select seq gb|JX101800.1|Human enterovirus 68 strain SA792 from South Africa VP1 gene, partial cds1327132793%0.094%JX101800.1Select seq dbj|AB667894.1|Human enterovirus 68 VP1 gene for polyprotein, partial cds, strain: 2251-Yamagata-20051323132399%0.092%AB667894.1Select seq emb|LN681325.1|Enterovirus D68 partial 1D gene for VP1 protein, isolate CF279027_FRA141321132192%0.094%LN681325.1Select seq dbj|AB667893.1|Human enterovirus 68 VP1 gene for polyprotein, partial cds, strain: 2218-Yamagata-20051315131599%0.092%AB667893.1Select seq emb|LN681319.1|Enterovirus D68 partial 1D gene for VP1 protein, isolate CF219068_FRA141314131492%0.094%LN681319.1Select seq emb|LN626610.1|Human enterovirus partial 1D gene for polyprotein, VP1 region, isolate CF267090_FRA141312131292%0.094%LN626610.1Select seq gb|KC763157.1|Human enterovirus 68 strain ITA/18641/08 VP1 gene, partial cds1312131298%0.092%KC763157.1Select seq dbj|AB667891.1|Human enterovirus 68 VP1 gene for polyprotein, partial cds, strain: 2062-Yamagata-20051312131299%0.092%AB667891.1Select seq dbj|AB667895.1|Human enterovirus 68 VP1 gene for polyprotein, partial cds, strain: 1703-Yamagata-20071306130699%0.092%AB667895.1Select seq dbj|AB667892.1|Human enterovirus 68 VP1 gene for polyprotein, partial cds, strain: 2124-Yamagata-20051306130699%0.092%AB667892.1 Link to comment Share on other sites More sharing options...
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