niman

Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ

Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ

June 27, 2016 DEPARTMENT OF HEALTH DAILY ZIKA UPDATE: THREE NEW TRAVEL-RELATED CASES Contact:Communications [email protected](850) 245-4111 Tallahassee, Fla.—In an effort to keep Florida residents and visitors safe and aware about the status of the Zika virus, the Florida Department of Health will issue a Zika virus update each week day at 2 p.m. Updates will include a CDC-confirmed Zika case count by county and information to better keep Floridians prepared. There are three new cases today with one in Broward, one in Collier and one in Miami-Dade counties. Of the cases confirmed in Florida, 16 are still exhibiting symptoms. According to CDC, symptoms associated with the Zika virus last between seven to 10 days. CDC recommends that women who are pregnant or thinking of becoming pregnant postpone travel to Zika affected areas. According to CDC guidance, providers should consider testing all pregnant women with a history of travel to a Zika affected area for the virus. CDC recommends that a pregnant woman with a history of Zika virus and her provider should consider additional ultrasounds. Florida has been monitoring pregnant women with evidence of Zika regardless of symptoms since January. The total number of pregnant women who have been monitored is 40, with 10 having met the previous CDC case definition. County Number of Cases (all travel related) Alachua 4 Brevard 4 Broward 32 Citrus 1 Clay 2 Collier 3 Duval 2 Escambia 1 Highlands 1 Hillsborough 5 Lee 5 Martin 1 Miami-Dade 63 Okaloosa 1 Orange 15 Osceola 7 Palm Beach 12 Pasco 2 Pinellas 6 Polk 4 Santa Rosa 1 Seminole 7 St. Johns 2 Volusia 2 Total cases not involving pregnant women 183 Cases involving pregnant women regardless of symptoms* 40 *Counties of pregnant women will not be shared. On Feb. 12, Governor Scott directed the State Surgeon General to activate a Zika Virus Information Hotline for current Florida residents and visitors, as well as anyone planning on traveling to Florida in the near future. The hotline, managed by the Department of Health, has assisted 2,138 callers since it launched. The number for the Zika Virus Information Hotline is 1-855-622-6735. All cases are travel-associated. There have been no locally-acquired cases of Zika in Florida. For more information on the Zika virus, click here. The department urges Floridians to drain standing water weekly, no matter how seemingly small. A couple drops of water in a bottle cap can be a breeding location for mosquitoes. Residents and visitors also need to use repellents when enjoying the Florida outdoors. More Information on DOH action on Zika: On Feb. 3, Governor Scott directed the State Surgeon General to issue a Declaration of Public Health Emergency for the counties of residents with travel-associated cases of Zika.There have been 24 counties included in the declaration– Alachua, Brevard, Broward, Citrus, Clay, Collier, Duval, Escambia, Highlands, Hillsborough, Lee, Martin, Miami-Dade, Okaloosa, Orange, Osceola, Palm Beach, Pasco, Pinellas, Polk, Santa Rosa, Seminole, St. Johns and Volusia – and will be updated as needed. DOH encourages Florida residents and visitors to protect themselves from all mosquito-borne illnesses by draining standing water; covering their skin with repellent and clothing; and covering windows with screens.DOH has a robust mosquito-borne illness surveillance system and is working with CDC, the Florida Department of Agriculture and Consumer Services and local county mosquito control boards to ensure that the proper precautions are being taken to protect Florida residents and visitors.On April 6, Governor Rick Scott and Interim State Surgeon General Dr. Celeste Philip hosted a conference call with Florida Mosquito Control Districts to discuss ongoing preparations to fight the possible spread of the Zika virus in Florida. There were 74 attendees on the call.On May 11, Governor Scott met with federal leaders on the importance of preparing for Zika as we would a hurricane. Governor Scott requested 5,000 Zika preparedness kits from HHS Secretary Sylvia Burwell as well as a plan from FEMA on how resources will be allocated to states in the event an emergency is declared.On June 1, Governor Scott requested for President Obama to provide preparedness items needed in order to increase Florida’s capacity to be ready when Zika becomes mosquito-borne in our state.On June 9, Governor Scott spoke with Health and Human Services Secretary Sylvia Burwell and Centers for Diseases Control (CDC) Director Dr. Tom Frieden on Zika preparedness and reiterated the requests that he has continued to make to the federal government to prepare for the Zika virus once it becomes mosquito-borne in Florida. Governor Scott also requested that the CDC provide an additional 1,300 Zika antibody tests to Florida to allow individuals, especially pregnant women and new mothers, to see if they ever had the Zika virus.On June 23, Governor Rick Scott announced that he will use his emergency executive authority to allocate $26.2 million in state funds for Zika preparedness, prevention and response in Florida.Florida currently has the capacity to test 5,632 people for active Zika virus and 2,046 for Zika antibodies.Federal Guidance on Zika: According to CDC, Zika illness is generally mild with a rash, fever and joint pain. CDC researchers have concluded that Zika virus is a cause of microcephaly and other birth defects.The FDA released guidance regarding donor screening, deferral and product management to reduce the risk of transfusion-transmission of Zika virus. Additional information is available on the FDA website here.CDC has put out guidance related to the sexual transmission of the Zika virus. This includes CDC recommendation that if you have traveled to a country with local transmission of Zika you should abstain from unprotected sex.Based on CDC guidance released, DOH will now report pregnant women with evidence of Zika virus regardless of symptoms. Prior to new guidance, CDC guidance was only to report cases of Zika if the pregnant women was symptomatic.For more information on Zika virus, click here. About the Florida Department of Health The department, nationally accredited by the Public Health Accreditation Board, works to protect, promote and improve the health of all people in Florida through integrated state, county and community efforts. Follow us on Twitter at @HealthyFla and on Facebook. For more information about the Florida Department of Health, please visit www.FloridaHealth.gov. http://www.floridahealth.gov/newsroom/2016/06/062716-zika-update.html

County Number of Cases (all travel related) Alachua 4 Brevard 4 Broward 32 Citrus 1 Clay 2 Collier 3 Duval 2 Escambia 1 Highlands 1 Hillsborough 5 Lee 5 Martin 1 Miami-Dade 63 Okaloosa 1 Orange 15 Osceola 7 Palm Beach 12 Pasco 2 Pinellas 6 Polk 4 Santa Rosa 1 Seminole 7 St. Johns 2 Volusia 2 Total cases not involving pregnant women 183 Cases involving pregnant women regardless of symptoms* 40 *Counties of pregnant women will not be shared.

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Allegheny County Residents Approved for Zika Testing: 113 CDC Confirmed Cases: 5(as of June 27) http://www.achd.net/topic-zika.html

Allegheny County Residents Approved for Zika Testing: 113 CDC Confirmed Cases: 5(as of June 27)

Zika Virus – June 27, 2016. Texas has had 47 reported cases of Zika virus disease. Of those, 46 were in travelers who were infected abroad and diagnosed after they returned home; one of those travelers was a pregnant woman. One case involved a Dallas County resident who had sexual contact with someone who acquired the Zika infection while traveling abroad. Texas Zika Cases by County: CountyCasesBexar6Collin2Dallas9Denton2Ellis1Fort Bend2Grayson1Harris13Lubbock1Medina1Tarrant4Travis2Val Verde1Williamson1Wise1Total47

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PRI/PRVABC59/2015 seq map updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1852518525100%0.0100%KX087101.2Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1852018520100%0.099%KU501215.1Select seq gb|KX377337.1|Zika virus strain PRVABC-59, complete genome1851118511100%0.099%KX377337.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds1842918429100%0.099%KU758877.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1842018420100%0.099%KU365778.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1841118411100%0.099%KU937936.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1840818408100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1840818408100%0.099%KU365779.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1839318393100%0.099%KU365780.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1839318393100%0.099%KU312312.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1839018390100%0.099%KU365777.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1837518375100%0.099%KU509998.3Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1837518375100%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1837218372100%0.099%KX056898.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1837218372100%0.099%KJ776791.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1836618366100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1836618366100%0.099%KU761564.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome1836318363100%0.099%KX280026.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1836318363100%0.099%KU991811.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1836318363100%0.099%KU955590.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1836318363100%0.099%KU321639.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome1835718357100%0.099%KX262887.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1835718357100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1835418354100%0.099%KU729218.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1834818348100%0.099%KX198135.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1834818348100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1834818348100%0.099%KU926309.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1834518345100%0.099%KU940228.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome1833918339100%0.099%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds1833918339100%0.099%KX247632.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1833918339100%0.099%KX156776.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1833918339100%0.099%KU501217.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1833618336100%0.099%KX156774.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1833618336100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833618336100%0.099%KU501216.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds1833018330100%0.099%KU820897.3Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1833018330100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1833018330100%0.099%KX087102.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1832718327100%0.099%KU729217.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183271832799%0.099%KU497555.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1832718327100%0.099%KU527068.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1831818318100%0.099%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1831818318100%0.099%KU922960.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1831218312100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1831218312100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1830318303100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1830318303100%0.099%KU853012.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1828218282100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1827318273100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1827318273100%0.099%KU963796.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome1826718267100%0.099%KX253996.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1826718267100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1826718267100%0.099%KU820899.2Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds1826418264100%0.099%KU866423.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182491824999%0.099%KU940224.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1813718137100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1803818038100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1773517735100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177351773599%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176851768598%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758017580100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1742917429100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164201642099%0.095%HQ234499.1Select seq gb|KX377336.1|Zika virus strain P6-740, complete genome1641516415100%0.095%KX377336.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1333113331100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133261332699%0.089%HQ234498.1Select seq gb|KX377335.1|Zika virus strain MR-766, complete genome1331713317100%0.089%KX377335.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1331513315100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1331113311100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1331113311100%0.089%KF268948.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1330813308100%0.089%LC002520.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1330413304100%0.089%KF383119.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1330413304100%0.089%KF268950.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1329913299100%0.089%KU955595.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1329213292100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1329213292100%0.089%KU955594.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1329013290100%0.089%KU955592.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1327713765100%0.089%KX198134.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1327213272100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1325713257100%0.089%KF383116.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1325713257100%0.089%DQ859059.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1325013250100%0.089%AY632535.2Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132321323299%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1319613196100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1316713275100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131651316599%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1299013058100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129001290097%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108771087797%0.084%KF383120.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds5025502527%0.099%KX212103.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds4991499127%0.099%KU758875.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds4989498927%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds4982498227%0.099%KU758870.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds4980498027%0.099%KU758873.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4980498027%0.099%KU312314.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds4967496727%0.099%KU758872.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds4956495627%0.099%KU758876.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4953495327%0.099%KU312313.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds4928492826%0.099%KU758869.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds4902490226%0.099%KU758868.1

LOCUS KX087101 10771 bp ss-RNA linear VRL 12-MAY-2016 DEFINITION Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome. ACCESSION KX087101 VERSION KX087101.2 GI:1027485270 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10771) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Stockwell,T., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (18-APR-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA REFERENCE 2 (bases 1 to 10771) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (12-MAY-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA REMARK Sequence update by submitter COMMENT On May 12, 2016 this sequence version replaced gi:1020267435. This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 245.4x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10771 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Homo sapiens/PRI/PRVABC59/2015" /isolate="V3/V2" /host="Homo sapiens" /db_xref="BEI:NR-50240" /db_xref="taxon:64320" /lab_host="Cercopithecus aethiops kidney epithelial cells" /country="Puerto Rico" /collection_date="Dec-2015" /note="passage details: V3/V2 (CDC/BEI); V# = number of passages in Vero cells" misc_feature 1..10771 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00005.MAIN" gene 80..10351 /gene="GP1" /locus_tag="A2G93_63481gpGP1" CDS 80..10351 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /codon_start=1 /product="genome polyprotein" /protein_id="AMZ03556.1" /db_xref="GI:1020267436" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMETIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVELQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYVATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 80..391 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 446..724 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="protein pr" mat_peptide 725..949 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 950..2461 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="envelope protein E" mat_peptide 2462..3517 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS1" mat_peptide 3518..4195 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS2A" mat_peptide 4196..4585 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS2B" mat_peptide 4586..6436 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS3" mat_peptide 6437..6817 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS4A" mat_peptide 6818..6886 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="protein 2K" mat_peptide 6887..7639 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS4B" mat_peptide 7640..10348 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 gacagttcga gtttgaagcg aaagctagca acagtatcaa caggttttat tttggatttg 61 gaaacgagag tttctggtca tgaaaaaccc aaaaaagaaa tccggaggat tccggattgt 121 caatatgcta aaacgcggag tagcccgtgt gagccccttt gggggcttga agaggctgcc 181 agccggactt ctgctgggtc atgggcccat caggatggtc ttggcgattc tagccttttt 241 gagattcacg gcaatcaagc catcactggg tctcatcaat agatggggtt cagtggggaa 301 aaaagaggct atggaaacaa taaagaagtt caagaaagat ctggctgcca tgctgagaat 361 aatcaatgct aggaaggaga agaagagacg aggcgcagat actagtgtcg gaattgttgg 421 cctcctgctg accacagcta tggcagcgga ggtcactaga cgtgggagtg catactatat 481 gtacttggac agaaacgatg ctggggaggc catatctttt ccaaccacat tggggatgaa 541 taagtgttat atacagatca tggatcttgg acacatgtgt gatgccacca tgagctatga 601 atgccctatg ctggatgagg gggtggaacc agatgacgtc gattgttggt gcaacacgac 661 gtcaacttgg gttgtgtacg gaacctgcca tcacaaaaaa ggtgaagcac ggagatctag 721 aagagctgtg acgctcccct cccattccac caggaagctg caaacgcggt cgcaaacctg 781 gttggaatca agagaataca caaagcactt gattagagtc gaaaattgga tattcaggaa 841 ccctggcttc gcgttagcag cagctgccat cgcttggctt ttgggaagct caacgagcca 901 aaaagtcata tacttggtca tgatactgct gattgccccg gcatacagca tcaggtgcat 961 aggagtcagc aatagggact ttgtggaagg tatgtcaggt gggacttggg ttgatgttgt 1021 cttggaacat ggaggttgtg tcaccgtaat ggcacaggac aaaccgactg tcgacataga 1081 gctggttaca acaacagtca gcaacatggc ggaggtaaga tcctactgct atgaggcatc 1141 aatatcagac atggcttctg acagccgctg cccaacacaa ggtgaagcct accttgacaa 1201 gcaatcagac actcaatatg tctgcaaaag aacgttagtg gacagaggct ggggaaatgg 1261 atgtggactt tttggcaaag ggagcctggt gacatgcgct aagtttgcat gctccaagaa 1321 aatgaccggg aagagcatcc agccagagaa tctggagtac cggataatgc tgtcagttca 1381 tggctcccag cacagtggga tgatcgttaa tgacacagga catgaaactg atgagaatag 1441 agcgaaagtt gagataacgc ccaattcacc gagagccgaa gccaccctgg ggggttttgg 1501 aagcctagga cttgattgtg aaccgaggac aggccttgac ttttcagatt tgtattactt 1561 gactatgaat aacaagcact ggttggttca caaggagtgg ttccacgaca ttccattacc 1621 ttggcacgct ggggcagaca ccggaactcc acactggaac aacaaagaag cactggtaga 1681 gttcaaggac gcacatgcca aaaggcaaac tgtcgtggtt ctagggagtc aagaaggagc 1741 agttcacacg gcccttgctg gagctctgga ggctgagatg gatggtgcaa agggaaggct 1801 gtcctctggc cacttgaaat gtcgcctgaa aatggataaa cttagattga agggcgtgtc 1861 atactccttg tgtactgcag cgttcacatt caccaagatc ccggctgaaa cactgcacgg 1921 gacagtcaca gtggagttac agtacgcagg gacagatgga ccttgcaagg ttccagctca 1981 gatggcggtg gacatgcaaa ctctgacccc agttgggagg ttgataaccg ctaaccccgt 2041 aatcactgaa agcactgaga actctaagat gatgctggaa cttgatccac catttgggga 2101 ctcttacatt gtcataggag tcggggagaa gaagatcacc caccactggc acaggagtgg 2161 cagcaccatt ggaaaagcat ttgaagccac tgtgagaggt gccaagagaa tggcagtctt 2221 gggagacaca gcctgggact ttggatcagt tggaggcgct ctcaactcat tgggcaaggg 2281 catccatcaa atttttggag cagctttcaa atcattgttt ggaggaatgt cctggttctc 2341 acaaattctc attggaacgt tgctgatgtg gttgggtctg aacacaaaga atggatctat 2401 ttcccttatg tgcttggcct tagggggagt gttgatcttc ttatccacag ccgtctctgc 2461 tgatgtgggg tgctcggtgg acttctcaaa gaaggagacg agatgcggta caggggtgtt 2521 cgtctataac gacgttgaag cctggaggga caggtacaag taccatcctg actccccccg 2581 tagattggca gcagcagtca agcaagcctg ggaagatggt atctgcggga tctcctctgt 2641 ttcaagaatg gaaaacatca tgtggagatc agtagaaggg gagctcaacg caatcctgga 2701 agagaatgga gttcaactga cggtcgttgt gggatctgta aaaaacccca tgtggagagg 2761 tccacagaga ttgcccgtgc ctgtgaacga gctgccccac ggctggaagg cttgggggaa 2821 atcgtatttc gtcagagcag caaagacaaa taacagcttt gtcgtggatg gtgacacact 2881 gaaggaatgc ccactcaaac atagagcatg gaacagcttt cttgtggagg atcatgggtt 2941 cggggtattt cacactagtg tctggctcaa ggttagagaa gattattcat tagagtgtga 3001 tccagccgtt attggaacag ctgttaaggg aaaggaggct gtacacagtg atctaggcta 3061 ctggattgag agtgagaaga atgacacatg gaggctgaag agggcccatc tgatcgagat 3121 gaaaacatgt gaatggccaa agtcccacac attgtggaca gatggaatag aagagagtga 3181 tctgatcata cccaagtctt tagctgggcc actcagccat cacaatacca gagagggcta 3241 caggacccaa atgaaagggc catggcacag tgaagagctt gaaattcggt ttgaggaatg 3301 cccaggcact aaggtccacg tggaggaaac atgtggaaca agaggaccat ctctgagatc 3361 aaccactgca agcggaaggg tgatcgagga atggtgctgc agggagtgca caatgccccc 3421 actgtcgttc cgggctaaag atggctgttg gtatggaatg gagataaggc ccaggaaaga 3481 accagaaagc aacttagtaa ggtcaatggt gactgcagga tcaactgatc acatggacca 3541 cttctccctt ggagtgcttg tgatcctgct catggtgcag gaagggctga agaagagaat 3601 gaccacaaag atcatcataa gcacatcaat ggcagtgctg gtagctatga tcctgggagg 3661 attttcaatg agtgacctgg ctaagcttgc aattttgatg ggtgccacct tcgcggaaat 3721 gaacactgga ggagatgtag ctcatctggc gctgatagcg gcattcaaag tcagaccagc 3781 gttgctggta tctttcatct tcagagctaa ttggacaccc cgtgaaagca tgctgctggc 3841 cttggcctcg tgtcttttgc aaactgcgat ctccgccttg gaaggcgacc tgatggttct 3901 catcaatggt tttgctttgg cctggttggc aatacgagcg atggttgttc cacgcactga 3961 taacatcacc ttggcaatcc tggctgctct gacaccactg gcccggggca cactgcttgt 4021 ggcgtggaga gcaggccttg ctacttgcgg ggggtttatg ctcctctctc tgaagggaaa 4081 aggcagtgtg aagaagaact taccatttgt catggccctg ggactaaccg ctgtgaggct 4141 ggtcgacccc atcaacgtgg tgggactgct gttgctcaca aggagtggga agcggagctg 4201 gccccctagc gaagtactca cagctgttgg cctgatatgc gcattggctg gagggttcgc 4261 caaggcagat atagagatgg ctgggcccat ggccgcggtc ggtctgctaa ttgtcagtta 4321 cgtggtctca ggaaagagtg tggacatgta cattgaaaga gcaggtgaca tcacatggga 4381 aaaagatgcg gaagtcactg gaaacagtcc ccggctcgat gtggcgctag atgagagtgg 4441 tgatttctcc ctggtggagg atgacggtcc ccccatgaga gagatcatac tcaaggtggt 4501 cctgatgacc atctgtggca tgaacccaat agccataccc tttgcagctg gagcgtggta 4561 cgtatacgtg aagactggaa aaaggagtgg tgctctatgg gatgtgcctg ctcccaagga 4621 agtaaaaaag ggggagacca cagatggagt gtacagagta atgactcgta gactgctagg 4681 ttcaacacaa gttggagtgg gagttatgca agagggggtc tttcacacta tgtggcacgt 4741 cacaaaagga tccgcgctga gaagcggtga agggagactt gatccatact ggggagatgt 4801 caagcaggat ctggtgtcat actgtggtcc atggaagcta gatgccgcct gggatgggca 4861 cagcgaggtg cagctcttgg ccgtgccccc cggagagaga gcgaggaaca tccagactct 4921 gcccggaata tttaagacaa aggatgggga cattggagcg gttgcgctgg attacccagc 4981 aggaacttca ggatctccaa tcctagacaa gtgtgggaga gtgataggac tttatggcaa 5041 tggggtcgtg atcaaaaacg ggagttatgt tagtgccatc acccaaggga ggagggagga 5101 agagactcct gttgagtgct tcgagccctc gatgctgaag aagaagcagc taactgtctt 5161 agacttgcat cctggagctg ggaaaaccag gagagttctt cctgaaatag tccgtgaagc 5221 cataaaaaca agactccgta ctgtgatctt agctccaacc agggttgtcg ctgctgaaat 5281 ggaggaggcc cttagagggc ttccagtgcg ttatatgaca acagcagtca atgtcaccca 5341 ctctggaaca gaaatcgtcg acttaatgtg ccatgccacc ttcacttcac gtctactaca 5401 gccaatcaga gtccccaact ataatctgta tattatggat gaggcccact tcacagatcc 5461 ctcaagtata gcagcaagag gatacatttc aacaagggtt gagatgggcg aggcggctgc 5521 catcttcatg accgccacgc caccaggaac ccgtgacgca tttccggact ccaactcacc 5581 aattatggac accgaagtgg aagtcccaga gagagcctgg agctcaggct ttgattgggt 5641 gacggatcat tctggaaaaa cagtttggtt tgttccaagc gtgaggaacg gcaatgagat 5701 cgcagcttgt ctgacaaagg ctggaaaacg ggtcatacag ctcagcagaa agacttttga 5761 gacagagttc cagaaaacaa aacatcaaga gtgggacttt gtcgtgacaa ctgacatttc 5821 agagatgggc gccaacttta aagctgaccg tgtcatagat tccaggagat gcctaaagcc 5881 ggtcatactt gatggcgaga gagtcattct ggctggaccc atgcctgtca cacatgccag 5941 cgctgcccag aggagggggc gcataggcag gaatcccaac aaacctggag atgagtatct 6001 gtatggaggt gggtgcgcag agactgacga agaccatgca cactggcttg aagcaagaat 6061 gctccttgac aatatttacc tccaagatgg cctcatagcc tcgctctatc gacctgaggc 6121 cgacaaagta gcagccattg agggagagtt caagcttagg acggagcaaa ggaagacctt 6181 tgtggaactc atgaaaagag gagatcttcc tgtttggctg gcctatcagg ttgcatctgc 6241 cggaataacc tacacagata gaagatggtg ctttgatggc acgaccaaca acaccataat 6301 ggaagacagt gtgccggcag aggtgtggac cagacacgga gagaaaagag tgctcaaacc 6361 gaggtggatg gacgccagag tttgttcaga tcatgcggcc ctgaagtcat tcaaggagtt 6421 tgccgctggg aaaagaggag cggcttttgg agtgatggaa gccctgggaa cactgccagg 6481 acacatgaca gagagattcc aggaagccat tgacaacctc gctgtgctca tgcgggcaga 6541 gactggaagc aggccttaca aagccgcggc ggcccaattg ccggagaccc tagagaccat 6601 aatgcttttg gggttgctgg gaacagtctc gctgggaatc ttcttcgtct tgatgaggaa 6661 caagggcata gggaagatgg gctttggaat ggtgactctt ggggccagcg catggctcat 6721 gtggctctcg gaaattgagc cagccagaat tgcatgtgtc ctcattgttg tgttcctatt 6781 gctggtggtg ctcatacctg agccagaaaa gcaaagatct ccccaggaca accaaatggc 6841 aatcatcatc atggtagcag taggtcttct gggcttgatt accgccaatg aactcggatg 6901 gttggagaga acaaagagtg acctaagcca tctaatggga aggagagagg agggggcaac 6961 cataggattc tcaatggaca ttgacctgcg gccagcctca gcttgggcca tctatgctgc 7021 cttgacaact ttcattaccc cagccgtcca acatgcagtg accacctcat acaacaacta 7081 ctccttaatg gcgatggcca cgcaagctgg agtgttgttt ggcatgggca aagggatgcc 7141 attctacgca tgggactttg gagtcccgct gctaatgata ggttgctact cacaattaac 7201 acccctgacc ctaatagtgg ccatcatttt gctcgtggcg cactacatgt acttgatccc 7261 agggctgcag gcagcagctg cgcgtgctgc ccagaagaga acggcagctg gcatcatgaa 7321 gaaccctgtt gtggatggaa tagtggtgac tgacattgac acaatgacaa ttgaccccca 7381 agtggagaaa aagatgggac aggtgctact catagcagta gccgtctcca gcgccatact 7441 gtcgcggacc gcctgggggt ggggggaggc tggggctctg atcacagccg caacttccac 7501 tttgtgggaa ggctctccga acaagtactg gaactcctct acagccactt cactgtgtaa 7561 catttttagg ggaagttact tggctggagc ttctctaatc tacacagtaa caagaaacgc 7621 tggcttggtc aagagacgtg ggggtggaac aggagagacc ctgggagaga aatggaaggc 7681 ccgcttgaac cagatgtcgg ccctggagtt ctactcctac aaaaagtcag gcatcaccga 7741 ggtgtgcaga gaagaggccc gccgcgccct caaggacggt gtggcaacgg gaggccatgc 7801 tgtgtcccga ggaagtgcaa agctgagatg gttggtggag cggggatacc tgcagcccta 7861 tggaaaggtc attgatcttg gatgtggcag agggggctgg agttactacg tcgccaccat 7921 ccgcaaagtt caagaagtga aaggatacac aaaaggaggc cctggtcatg aagaacccgt 7981 gttggtgcaa agctatgggt ggaacatagt ccgtcttaag agtggggtgg acgtctttca 8041 tatggcggct gagccgtgtg acacgttgct gtgtgacata ggtgagtcat catctagtcc 8101 tgaagtggaa gaagcacgga cgctcagagt cctctccatg gtgggggatt ggcttgaaaa 8161 aagaccagga gccttttgta taaaagtgtt gtgcccatac accagcacta tgatggaaac 8221 cctggagcga ctgcagcgta ggtatggggg aggactggtc agagtgccac tctcccgcaa 8281 ctctacacat gagatgtact gggtctctgg agcgaaaagc aacaccataa aaagtgtgtc 8341 caccacgagc cagctcctct tggggcgcat ggacgggcct aggaggccag tgaaatatga 8401 ggaggatgtg aatctcggct ctggcacgcg ggctgtggta agctgcgctg aagctcccaa 8461 catgaagatc attggtaacc gcattgaaag gatccgcagt gagcacgcgg aaacgtggtt 8521 ctttgacgag aaccacccat ataggacatg ggcttaccat ggaagctatg aggcccccac 8581 acaagggtca gcgtcctctc taataaacgg ggttgtcagg ctcctgtcaa aaccctggga 8641 tgtggtgact ggagtcacag gaatagccat gaccgacacc acaccgtatg gtcagcaaag 8701 agttttcaag gaaaaagtgg acactagggt gccagacccc caagaaggca ctcgtcaggt 8761 tatgagcatg gtctcttcct ggttgtggaa agagctaggc aaacacaaac ggccacgagt 8821 ctgcaccaaa gaagagttca tcaacaaggt tcgtagcaat gcagcattag gggcaatatt 8881 tgaagaggaa aaagagtgga agactgcagt ggaagctgtg aacgatccaa ggttctgggc 8941 tctagtggac aaggaaagag agcaccacct gagaggagag tgccagagct gtgtgtacaa 9001 catgatggga aaaagagaaa agaaacaagg ggaatttgga aaggccaagg gcagccgcgc 9061 catctggtat atgtggctag gggctagatt tctagagttc gaagcccttg gattcttgaa 9121 cgaggatcac tggatgggga gagagaactc aggaggtggt gttgaagggc tgggattaca 9181 aagactcgga tatgtcctag aagagatgag tcgtatacca ggaggaagga tgtatgcaga 9241 tgacactgct ggctgggaca cccgcattag caggtttgat ctggagaatg aagctctaat 9301 caccaaccaa atggagaaag ggcacagggc cttggcattg gccataatca agtacacata 9361 ccaaaacaaa gtggtaaagg tccttagacc agctgaaaaa gggaaaacag ttatggacat 9421 tatttcgaga caagaccaaa gggggagcgg acaagttgtc acttacgctc ttaacacatt 9481 taccaaccta gtggtgcaac tcattcggaa tatggaggct gaggaagttc tagagatgca 9541 agacttgtgg ctgctgcgga ggtcagagaa agtgaccaac tggttgcaga gcaacggatg 9601 ggataggctc aaacgaatgg cagtcagtgg agatgattgc gttgtgaagc caattgatga 9661 taggtttgca catgccctca ggttcttgaa tgatatggga aaagttagga aggacacaca 9721 agagtggaaa ccctcaactg gatgggacaa ctgggaagaa gttccgtttt gctcccacca 9781 cttcaacaag ctccatctca aggacgggag gtccattgtg gttccctgcc gccaccaaga 9841 tgaactgatt ggccgggccc gcgtctctcc aggggcggga tggagcatcc gggagactgc 9901 ttgcctagca aaatcatatg cgcaaatgtg gcagctcctt tatttccaca gaagggacct 9961 ccgactgatg gccaatgcca tttgttcatc tgtgccagtt gactgggttc caactgggag 10021 aactacctgg tcaatccatg gaaagggaga atggatgacc actgaagaca tgcttgtggt 10081 gtggaacaga gtgtggattg aggagaacga ccacatggaa gacaagaccc cagttacgaa 10141 atggacagac attccctatt tgggaaaaag ggaagacttg tggtgtggat ctctcatagg 10201 gcacagaccg cgcaccacct gggctgagaa cattaaaaac acagtcaaca tggtgcgcag 10261 gatcataggt gatgaagaaa agtacatgga ctacctatcc acccaagttc gctacttggg 10321 tgaagaaggg tctacacctg gagtgctgta agcaccaatc ttaatgttgt caggcctgct 10381 agtcagccac agcttgggga aagctgtgca gcctgtgacc cccccaggag aagctgggaa 10441 accaagccta tagtcaggcc gagaacgcca tggcacggaa gaagccatgc tgcctgtgag 10501 cccctcagag gacactgagt caaaaaaccc cacgcgcttg gaggcgcagg atgggaaaag 10561 aaggtggcga ccttccccac ccttcaatct ggggcctgaa ctggagatca gctgtggatc 10621 tccagaagag ggactagtgg ttagaggaga ccccccggaa aacgcaaaac agcatattga 10681 cgctgggaaa gaccagagac tccatgagtt tccaccacgc tggccgccag gcacagatcg 10741 ccgaatagcg gcggccggtg tggggaaatc c

Map Update https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX377337.1|Zika virus strain PRVABC-59, complete genome1865118651100%0.0100%KX377337.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1864218642100%0.099%KU501215.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1863718637100%0.099%KX087101.2Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1854318543100%0.099%KU365778.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1853418534100%0.099%KU937936.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1852918529100%0.099%KU365779.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1852118521100%0.099%KU707826.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1851618516100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1851118511100%0.099%KU365777.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds184981849899%0.099%KU758877.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1848918489100%0.099%KU509998.3Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome1848418484100%0.099%KX280026.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1848418484100%0.099%KU991811.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome1848018480100%0.099%KX262887.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1848018480100%0.099%KX051563.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1847618476100%0.099%KU321639.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds184741847499%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1847418474100%0.099%KU729218.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1847118471100%0.099%KX198135.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1847118471100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1847118471100%0.099%KU926309.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome1846218462100%0.099%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds1846218462100%0.099%KX247632.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds184621846299%0.099%KU312312.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1845818458100%0.099%KU940228.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1845318453100%0.099%KX087102.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds184511845199%0.099%KJ776791.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds184491844999%0.099%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome184491844999%0.099%KU497555.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1844718447100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1844718447100%0.099%KU527068.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds1844418444100%0.099%KU820897.3Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome184441844499%0.099%KX156774.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1843818438100%0.099%KU870645.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds184371843799%0.099%KU955590.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1843518435100%0.099%KU926310.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome184311843199%0.099%KX156776.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1842618426100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1842418424100%0.099%KU853012.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome184221842299%0.099%KX156775.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds184151841599%0.099%KU647676.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1840218402100%0.099%KX117076.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome183971839799%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome183931839399%0.099%KU922923.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome1839018390100%0.099%KX253996.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1839018390100%0.099%KU820899.2Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds183721837299%0.099%KU963796.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds183721837299%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds183661836699%0.099%KX056898.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds183361833699%0.099%KU955589.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds183361833699%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds183301833099%0.099%KU501216.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds182671826799%0.099%KX185891.1Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds182581825899%0.099%KU866423.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1825118251100%0.099%KU744693.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182451824598%0.099%KU940224.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1815918159100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1785817858100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177301773099%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176791767998%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds175761757699%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1755117551100%0.098%KU681082.3Select seq gb|KX377336.1|Zika virus strain P6-740, complete genome1653616536100%0.095%KX377336.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164151641599%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1343613436100%0.089%KU720415.1Select seq gb|KX377335.1|Zika virus strain MR-766, complete genome1342113421100%0.089%KX377335.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1342013420100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1341613416100%0.089%KF268948.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1341213412100%0.089%LC002520.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1340913409100%0.089%KU955595.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1340913409100%0.089%KF268950.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1340013400100%0.089%KU955592.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1339613396100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1339613396100%0.089%KU955594.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1338213382100%0.089%KU955591.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome133661385499%0.089%KX198134.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1335513355100%0.089%AY632535.2Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133291332999%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds133201332099%0.089%KF383115.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds133081330899%0.089%KF383119.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132611326199%0.089%KF383116.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds132561336399%0.088%KU963574.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132521325299%0.089%DQ859059.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132361323699%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds132001320099%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131711317199%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds129941306299%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129061290696%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108711087196%0.084%KF383120.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds5115511527%0.099%KU758871.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds5113511327%0.099%KU758875.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds5108510827%0.099%KU758870.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds5106510627%0.099%KU758873.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds5093509327%0.099%KU758872.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds5083508327%0.099%KU758876.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds5063506327%0.099%KU312314.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds5054505427%0.099%KU758869.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds5038503827%0.099%KU312313.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds5029502927%0.099%KU758868.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds5023502327%0.099%KU758874.1

LOCUS KX377337 10807 bp RNA linear VRL 22-JUN-2016 DEFINITION Zika virus strain PRVABC-59, complete genome. ACCESSION KX377337 VERSION KX377337.1 GI:1036637434 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10807) AUTHORS Yun,S.-I., Song,B.-H., Frank,J.C., Julander,J.G., Polejaeva,I.A., Davies,C.J., White,K.L. and Lee,Y.-M. TITLE Complete Genome Sequences of Three Historically Important, Spatiotemporally Distinct, and Genetically Divergent Strains of Zika Virus: MR-766, P6-740, and PRVABC-59 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10807) AUTHORS Yun,S.-I., Song,B.-H., Frank,J.C., Julander,J.G., Polejaeva,I.A., Davies,C.J., White,K.L. and Lee,Y.-M. TITLE Direct Submission JOURNAL Submitted (12-JUN-2016) Department of Animal, Dairy, and Veterinary Sciences (ADVS), College of Agriculture and Applied Sciences, Utah State University, UMC 9830 Old Main Hill, Logan, UT 84322, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10807 /organism="Zika virus" /mol_type="genomic RNA" /strain="PRVABC-59" /host="Homo sapiens" /db_xref="taxon:64320" /country="Puerto Rico" /collection_date="Dec-2015" /note="genotype: Asian lineage" CDS 108..10379 /codon_start=1 /product="polyprotein" /protein_id="ANK57897.1" /db_xref="GI:1036637435" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMETIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMGRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYVATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 agttgttgat ctgtgtgaat cagactgcga cagttcgagt ttgaagcgaa agctagcaac 61 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccaa 121 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga 181 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca 241 ggatggtctt ggcgattcta gcctttttga gattcacggc aatcaagcca tcactgggtc 301 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaacaata aagaagttca 361 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacgag 421 gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg 481 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca 541 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac 601 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag 661 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc 721 acaaaaaagg tgaagcacgg agatctagaa gagctgtgac gctcccctcc cattccacca 781 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga 841 ttagagtcga aaattggata ttcaggaacc ctggcttcgc gttagcagca gctgccatcg 901 cttggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga 961 ttgccccggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta 1021 tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc accgtaatgg 1081 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg 1141 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttctgac agccgctgcc 1201 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa 1261 cgttagtgga cagaggctgg ggaaatggat gtggactttt tggcaaaggg agcctggtga 1321 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc 1381 tggagtaccg gataatgctg tcagttcatg gctcccagca cagtgggatg atcgttaatg 1441 acacaggaca tgaaactgat gagaatagag cgaaagttga gataacgccc aattcaccga 1501 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag 1561 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggttcaca 1621 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac 1681 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg 1741 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg 1801 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa 1861 tggataaact tagattgaag ggcgtgtcat actccttgtg tactgcagcg ttcacattca 1921 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga 1981 cagatggacc ttgcaaggtt ccagctcaga tggcggtgga catgcaaact ctgaccccag 2041 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga 2101 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga 2161 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg 2221 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg 2281 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat 2341 cattgtttgg aggaatgtcc tggttctcac aaattctcat tggaacgttg ctgatgtggt 2401 tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta gggggagtgt 2461 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga 2521 aggagacgag atgcggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca 2581 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg 2641 aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg tggagatcag 2701 tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg gtcgttgtgg 2761 gatctgtaaa aaaccccatg gggagaggtc cacagagatt gcccgtgcct gtgaacgagc 2821 tgccccacgg ctggaaggct tgggggaaat cgtatttcgt cagagcagca aagacaaata 2881 acagctttgt cgtggatggt gacacactga aggaatgccc actcaaacat agagcatgga 2941 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg 3001 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggaa 3061 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga 3121 ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaag tcccacacat 3181 tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttta gctgggccac 3241 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg 3301 aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg gaggaaacat 3361 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat 3421 ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg ggctaaagat ggctgttggt 3481 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcaatggtga 3541 ctgcaggatc aactgatcac atggaccact tctcccttgg agtgcttgtg atcctgctca 3601 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg 3661 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa 3721 ttttgatggg tgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc 3781 tgatagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc agagctaatt 3841 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct 3901 ccgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa 3961 tacgagcgat ggttgttcca cgcactgata acatcacctt ggcaatcctg gctgctctga 4021 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgcgggg 4081 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca 4141 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg ggactgctgt 4201 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc 4261 tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg 4321 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca 4381 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc 4441 ggctcgatgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc 4501 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag 4561 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg 4621 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt 4681 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag 4741 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag 4801 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat 4861 ggaagctaga tgccgcctgg gatgggcaca gcgaggtgca gctcttggcc gtgccccccg 4921 gagagagagc gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca 4981 ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt 5041 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaacggg agttatgtta 5101 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccctcga 5161 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga 5221 gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag 5281 ctccaaccag ggttgtcgct gctgaaatgg aggaggccct tagagggctt ccagtgcgtt 5341 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc 5401 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata 5461 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa 5521 caagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca ccaggaaccc 5581 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga 5641 gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca gtttggtttg 5701 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg 5761 tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt 5821 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg 5881 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattctgg 5941 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga 6001 atcccaacaa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag 6061 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc 6121 tcatagcctc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca 6181 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg 6241 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct 6301 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca 6361 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc 6421 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg gcttttggag 6481 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg 6541 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg 6601 cccaattgcc ggagacccta gagaccataa tgcttttggg gttgctggga acagtctcgc 6661 tgggaatctt cttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg 6721 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg 6781 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc 6841 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagta ggtcttctgg 6901 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc 6961 taatgggaag gagagaggag ggggcaacca taggattctc aatggacatt gacctgcggc 7021 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac 7081 atgcagtgac cacctcatac aacaactact ccttaatggc gatggccacg caagctggag 7141 tgttgtttgg catgggcaaa gggatgccat tctacgcatg ggactttgga gtcccgctgc 7201 taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc atcattttgc 7261 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc 7321 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg 7381 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca 7441 tagcagtagc cgtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg 7501 gggctctgat cacagccgca acttccactt tgtgggaagg ctctccgaac aagtactgga 7561 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt 7621 ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag 7681 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct 7741 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca 7801 aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt 7861 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag 7921 ggggctggag ttactacgtc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa 7981 aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc 8041 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt 8101 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc 8161 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt 8221 gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg tatgggggag 8281 gattggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag 8341 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg 8401 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg 8461 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga 8521 tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatat aggacatggg 8581 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg 8641 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga 8701 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc 8761 cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag 8821 agctaggcaa acacaaacgg ccacgagtct gcaccaaaga agagttcatc aacaaggttc 8881 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg 8941 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga 9001 gaggagagtg ccagagctgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg 9061 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc 9121 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag 9181 gaggtggtgt tgaagggctg ggattacaaa gactcggata tgtcctagaa gagatgagtc 9241 gtataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcattagca 9301 ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg cacagggcct 9361 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag 9421 ctgaaaaagg gaaaacagtt atggacatta tttcgagaca agaccaaagg gggagcggac 9481 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata 9541 tggaggctga ggaagttcta gagatgcaag acttgtggct gctgcggagg tcagagaaag 9601 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag 9661 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg 9721 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact 9781 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt 9841 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag 9901 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg caaatgtggc 9961 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg 10021 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat 10081 ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag gagaacgacc 10141 acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg ggaaaaaggg 10201 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca 10261 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact 10321 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga gtgctgtaag 10381 caccaatctt aatgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc 10441 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg 10501 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca 10561 cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg 10621 ggcctgaact ggagatcagc tgtggatctc cagaagaggg actagtggtt agaggagacc 10681 ccccggaaaa cgcaaaacag catattgacg ctgggaaaga ccagagactc catgagtttc 10741 caccacgctg gccgccaggc acagatcgcc gaatagcggc ggccggtgtg gggaaatcca 10801 tgggtct

Utah State has released a full Zika PRVABC-59 sequence. http://www.ncbi.nlm.nih.gov/nuccore/KX377337.1

Map Update https://www.google.com/maps/d/edit?hl=en&hl=en&authuser=0&authuser=0&mid=1FlIB7hHnVgGD9TlbSx5HwAj-PEQ

As of June 24, 2016 in South Carolina: Travel-associated cases reported: 6Pregnant women: 0Sexually transmitted: 1*Locally acquired vector-borne cases reported: 0Total cases: 6South Carolina has had 6 travel-associated cases of Zika virus. Of those, 5 were in travelers who were infected abroad and diagnosed after they returned home. *One case involved a South Carolina resident who had sexual contact with someone who acquired the Zika infection while traveling abroad. Due to federal privacy restrictions, DHEC is unable to provide additional information concerning any individual, including details about physical condition, hospitalization, age, sex, and residence. http://www.scdhec.gov/Health/DiseasesandConditions/InfectiousDiseases/InsectAnimalBorne/ZikaVirus/

As of June 24, 2016 in South Carolina: Travel-associated cases reported: 6Pregnant women: 0Sexually transmitted: 1*Locally acquired vector-borne cases reported: 0Total cases: 6South Carolina has had 6 travel-associated cases of Zika virus. Of those, 5 were in travelers who were infected abroad and diagnosed after they returned home. *One case involved a South Carolina resident who had sexual contact with someone who acquired the Zika infection while traveling abroad. Due to federal privacy restrictions, DHEC is unable to provide additional information concerning any individual, including details about physical condition, hospitalization, age, sex, and residence.

Sequences producing significant alignments:Select:AllNone Selected:0 AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU921608.1|Yellow fever virus isolate CNYF01/2016, complete genome1846518465100%0.0100%KU921608.1Select seq gb|KX027336.1|Yellow fever virus isolate CIC4, complete genome1834818348100%0.099%KX027336.1Select seq gb|KX010995.1|Yellow fever virus isolate CIC2, complete genome1833918339100%0.099%KX010995.1Select seq gb|KX010996.1|Yellow fever virus isolate CIC3, complete genome1832318323100%0.099%KX010996.1Select seq gb|KX010994.1|Yellow fever virus isolate CIC1, complete genome1804218042100%0.099%KX010994.1Select seq gb|AY968064.1|Yellow fever virus strain Angola71, complete genome1770317703100%0.098%AY968064.1Select seq gb|DQ235229.1|Yellow fever virus strain Couma, complete genome1132411324100%0.085%DQ235229.1Select seq gb|AY968065.1|Yellow fever virus strain Uganda48a, complete genome1130111301100%0.084%AY968065.1Select seq gb|JN620362.1|Yellow fever virus strain Uganda 2010, complete genome1129011290100%0.084%JN620362.1Select seq gb|JF912179.1|Yellow fever virus strain BeAR378600, complete genome87818781100%0.079%JF912179.1Select seq gb|JF912185.1|Yellow fever virus strain BeAR513008, complete genome87638763100%0.079%JF912185.1Select seq gb|AY603338.1|Yellow fever virus strain Ivory Coast 1999, complete genome87608760100%0.079%AY603338.1Select seq gb|JF912186.1|Yellow fever virus strain BeH526722, complete genome87498749100%0.079%JF912186.1Select seq gb|JF912184.1|Yellow fever virus strain BeH463676, complete genome87428742100%0.079%JF912184.1Select seq gb|AY572535.1|Yellow fever virus strain Gambia 2001, complete genome87298729100%0.079%AY572535.1Select seq gb|JX898868.1|Yellow fever virus isolate HD117294 from Senegal, complete genome87278727100%0.079%JX898868.1Select seq gb|JF912183.1|Yellow fever virus strain BeH423602, complete genome87278727100%0.079%JF912183.1Select seq gb|JX898873.1|Yellow fever virus isolate ArD149214 from Senegal, complete genome87228722100%0.079%JX898873.1Select seq gb|JX898874.1|Yellow fever virus isolate ArD149194 from Senegal, complete genome87168716100%0.079%JX898874.1Select seq gb|KM388817.1|Yellow fever virus strain 2A polyprotein gene, complete cds87138713100%0.079%KM388817.1Select seq gb|JX898875.1|Yellow fever virus isolate ArD149815 from Senegal, complete genome87138713100%0.079%JX898875.1Select seq gb|JX898870.1|Yellow fever virus isolate ArD121040 from Senegal, complete genome86978697100%0.079%JX898870.1Select seq gb|KM388816.1|Yellow fever virus strain 10A polyprotein gene, complete cds86958695100%0.079%KM388816.1Select seq gb|JX898880.1|Yellow fever virus isolate ArD181564 from Senegal, complete genome86938693100%0.079%JX898880.1Select seq gb|JX898877.1|Yellow fever virus isolate ArD181464 from Senegal, complete genome86918691100%0.079%JX898877.1Select seq gb|JF912187.1|Yellow fever virus strain BeH622205, complete genome86918691100%0.079%JF912187.1Select seq gb|JX898878.1|Yellow fever virus isolate ArD181250 from Senegal, complete genome86898689100%0.079%JX898878.1Select seq gb|JF912188.1|Yellow fever virus strain BeH622493, complete genome86888688100%0.079%JF912188.1Select seq gb|JF912180.1|Yellow fever virus strain BeH394880, complete genome86808680100%0.079%JF912180.1Select seq gb|JX898876.1|Yellow fever virus isolate ArD156468 from Senegal, complete genome86688668100%0.079%JX898876.1Select seq gb|JF912189.1|Yellow fever virus strain BeAR646536, complete genome86528652100%0.079%JF912189.1Select seq gb|JF912182.1|Yellow fever virus strain BeH422973, complete genome86528652100%0.079%JF912182.1Select seq gb|JF912190.1|Yellow fever virus strain BeH655417, complete genome86508650100%0.079%JF912190.1Select seq gb|HM582851.1|Yellow fever virus strain TVP11767 polyprotein gene, complete cds86468646100%0.079%HM582851.1Select seq gb|JX898869.1|Yellow fever virus isolate DakArAmt7 from Cote d'Ivoire, complete genome86418641100%0.079%JX898869.1Select seq gb|KM388815.1|Yellow fever virus strain 9A polyprotein gene, complete cds86328632100%0.079%KM388815.1Select seq gb|KM388814.1|Yellow fever virus strain 6A polyprotein gene, complete cds86328632100%0.079%KM388814.1Select seq gb|AY640589.1|Yellow fever virus strain ASIBI, complete genome86308630100%0.079%AY640589.1Select seq gb|KF769016.1|Yellow fever virus strain Asibi, complete genome86268626100%0.079%KF769016.1Select seq gb|KM388818.1|Yellow fever virus strain 8A polyprotein gene, complete cds85968596100%0.079%KM388818.1Select seq gb|KF907504.1|Yellow fever virus strain 88/1999, complete genome85798579100%0.079%KF907504.1Select seq gb|U21056.1|YFU21056Yellow fever virus French viscerotropic strain, complete genome85678567100%0.079%U21056.1Select seq gb|JX898872.1|Yellow fever virus isolate ArD114972 from Senegal, complete genome85438543100%0.079%JX898872.1Select seq gb|JX898871.1|Yellow fever virus isolate ArD114896 from Senegal, complete genome85348534100%0.079%JX898871.1Select seq gb|DQ100292.1|Yellow fever virus strain 17DD-Brazil, complete genome85278527100%0.079%DQ100292.1Select seq gb|U21055.1|YFU21055Yellow fever virus French neurotropic strain, complete genome85228522100%0.079%U21055.1Select seq gb|U17066.1|YFU17066Yellow fever virus vaccine strain 17DD, complete genome85098509100%0.078%U17066.1Select seq gb|GQ379162.1|Yellow fever virus strain case #1, complete genome85078507100%0.078%GQ379162.1Select seq emb|X03700.1|Yellow fever virus complete genome, 17D vaccine strain85048504100%0.078%X03700.1Select seq gb|KF769015.1|Yellow fever virus strain 17D-204, complete genome85008500100%0.078%KF769015.1Select seq gb|JN811143.1|Yellow fever virus 17D YF-VAX Vero adapted Series C P11, complete genome85008500100%0.078%JN811143.1Select seq gb|JX503529.1|Yellow fever virus strain YF/Vaccine/USA/Sanofi-Pasteur-17D-204/UF795AA/YFVax, complete genome85008500100%0.078%JX503529.1Select seq gb|JN628279.1|Yellow fever virus strain 17D RKI, complete genome85008500100%0.078%JN628279.1Select seq gb|AF052444.1|AF052444Yellow fever virus clone HONG8 polyprotein gene, complete cds85008500100%0.078%AF052444.1Select seq gb|JX949181.1|Yellow fever virus strain 17D polyprotein gene, complete cds84958495100%0.078%JX949181.1Select seq gb|GQ379163.1|Yellow fever virus strain case #2, complete genome84958495100%0.078%GQ379163.1Select seq gb|FJ654700.1|Yellow fever virus 17D/Tiantan, complete genome84958495100%0.078%FJ654700.1Select seq gb|DQ118157.1|Yellow fever virus isolate YF-AVD2791-93F/04 from Spain, complete genome84958495100%0.078%DQ118157.1Select seq emb|X15062.1|Yellow fever virus genomic RNA84958495100%0.078%X15062.1Select seq gb|AF052446.1|AF052446Yellow fever virus clone HONG10 polyprotein gene, complete cds84958495100%0.078%AF052446.1Select seq gb|AF052439.1|AF052439Yellow fever virus clone HONG3 polyprotein gene, complete cds84958495100%0.078%AF052439.1Select seq gb|AF052437.1|AF052437Yellow fever virus clone HONG1 polyprotein gene, complete cds84958495100%0.078%AF052437.1Select seq gb|U17067.1|YFU17067Yellow fever virus vaccine strain 17D-213, complete genome84958495100%0.078%U17067.1Select seq gb|JN811141.1|Yellow fever virus 17D YF-VAX Vero adapted Series A P11, complete genome84918491100%0.078%JN811141.1Select seq gb|AF052445.1|AF052445Yellow fever virus clone HONG9 polyprotein gene, complete cds84918491100%0.078%AF052445.1Select seq gb|AF052438.1|AF052438Yellow fever virus clone HONG2 polyprotein gene, complete cds84918491100%0.078%AF052438.1Select seq gb|JN811142.1|Yellow fever virus 17D YF-VAX Vero adapted Series B P11, complete genome84868486100%0.078%JN811142.1Select seq gb|U54798.1|YFU54798Yellow fever virus strain 85-82H Ivory Coast, complete genome84848484100%0.078%U54798.1Select seq gb|AF094612.1|AF094612Yellow fever virus strain Trinidad 79A isolate 788379, complete genome84248424100%0.078%AF094612.1Select seq gb|JF912181.1|Yellow fever virus strain BeH413820, complete genome84158415100%0.078%JF912181.1Select seq gb|DQ322634.1|YFV replicon vector FMDV-2A-def, complete sequence8215833097%0.078%DQ322634.1Select seq gb|DQ322633.1|YFV replicon vector capsid-def, complete sequence8215833097%0.078%DQ322633.1Select seq gb|DQ322635.1|YFV replicon vector prME-def, complete sequence6538686681%0.078%DQ322635.1Select seq dbj|D14458.1|YFVCMENSYellow fever virus prM gene for precursor polyprotein, partial cds3155315534%0.080%D14458.1Select seq gb|AF052443.1|AF052443Yellow fever virus clone HONG7 polyprotein gene, partial cds2237223726%0.078%AF052443.1Select seq gb|AF052441.1|AF052441Yellow fever virus clone HONG5 polyprotein gene, partial cds2232223226%0.078%AF052441.1Select seq gb|GU951804.1|Yellow fever virus strain BeAn 131 polyprotein gene, partial cds2228222826%0.078%GU951804.1Select seq gb|AH005112.2|Yellow fever virus strain Y5 polyprotein and nonstructural protein NS2A mRNAs, partial cds2127249327%0.080%AH005112.2Select seq gb|AY960140.1|Yellow fever virus strain ArB28153 polyprotein gene, partial cds2125212517%0.086%AY960140.1Select seq gb|DQ322638.1|VEEV replicon vector YFV-C2, complete sequence2118211822%0.080%DQ322638.1Select seq gb|AF052440.1|AF052440Yellow fever virus clone HONG4 polyprotein gene, partial cds2113211322%0.080%AF052440.1Select seq gb|L06480.1|YFVCAPSIDMYellow fever virus capsid protein, M protein, and envelope protein mRNAs2113211322%0.080%L06480.1Select seq gb|DQ322642.1|VEEV replicon vector YFV-C3opt, complete sequence1916191622%0.078%DQ322642.1Select seq gb|DQ322640.1|VEEV replicon vector YFV-C3opt-NS2mut, complete sequence1916191622%0.078%DQ322640.1Select seq gb|U23578.1|YFU23578Yellow fever virus isolate SE7445/Uganda/1964/Human envelope protein (E) mRNA, partial cds1810181014%0.087%U23578.1Select seq gb|U23577.1|YFU23577Yellow fever virus isolate M-112/Sudan/1940/Human envelope protein (E) mRNA, partial cds1801180114%0.087%U23577.1Select seq gb|DQ068260.1|Yellow fever virus strain SSUD03-01 envelope protein gene, partial cds1792179214%0.087%DQ068260.1Select seq gb|DQ068264.1|Yellow fever virus strain SSUD03-05 envelope protein gene, partial cds1786178614%0.087%DQ068264.1Select seq gb|DQ068263.1|Yellow fever virus strain SSUD03-04 envelope protein gene, partial cds1786178614%0.087%DQ068263.1Select seq gb|DQ068262.1|Yellow fever virus strain SSUD03-03 envelope protein gene, partial cds1786178614%0.087%DQ068262.1Select seq gb|AY839636.1|Yellow fever virus strain ETH2777/Ethiopia61 envelope protein gene, partial cds1786178614%0.087%AY839636.1Select seq gb|AY839634.1|Yellow fever virus strain HB1782/CAR86 envelope protein gene, partial cds1777177714%0.087%AY839634.1Select seq gb|U23573.1|YFU23573Yellow fever virus isolate DaHB1504/C. African Republic/1985/Human envelope protein (E) mRNA, partial cds1773177314%0.087%U23573.1Select seq gb|U23569.1|YFU23569Yellow fever virus isolate 7914/Kenya/1993/Human envelope protein (E) mRNA, partial cds1773177314%0.087%U23569.1Select seq gb|U23575.1|YFU23575Yellow fever virus isolate KE93-477/Kenya/1993/Mosquito envelope protein (E) mRNA, partial cds1768176814%0.087%U23575.1Select seq gb|U23571.1|YFU23571Yellow fever virus isolate ArB8883/C. African Republic/1977/Human envelope protein (E) mRNA, partial cds1759175914%0.086%U23571.1Select seq gb|AY960138.1|Yellow fever virus strain ArA 20628 polyprotein gene, partial cds1746174617%0.081%AY960138.1Select seq gb|U23576.1|YFU23576Yellow fever virus isolate Kouma/Ethiopia/1961/Human envelope protein (E) mRNA, partial cds1745174514%0.086%U23576.1Select seq gb|AY960137.1|Yellow fever virus strain Ara29436 polyprotein gene, partial cds1707170717%0.081%AY960137.1Select seq gb|AY960139.1|Yellow fever virus strain Ara6734 polyprotein gene, partial cds1674167417%0.081%AY960139.1

LOCUS KU921608 10823 bp RNA linear VRL 20-JUN-2016 DEFINITION Yellow fever virus isolate CNYF01/2016, complete genome. ACCESSION KU921608 VERSION KU921608.1 GI:1036436399 KEYWORDS . SOURCE Yellow fever virus (YFV) ORGANISM Yellow fever virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Yellow fever virus group. REFERENCE 1 (bases 1 to 10823) AUTHORS Liu,L. TITLE Complete Genome Sequence of Yellow Fever virus isolate CNYF01/2016 from First Imported Case in China mainland, March 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10823) AUTHORS Liu,L. TITLE Direct Submission JOURNAL Submitted (13-MAR-2016) Department of Viral Hemorrhagic Fever, National Institute for Viral Diseases Control and Prevention, Changbai Road 155, Beijing 102206, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC genomic Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10823 /organism="Yellow fever virus" /mol_type="genomic RNA" /isolate="CNYF01/2016" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:11089" /country="China" /collection_date="10-Mar-2016" CDS 121..10359 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="ANK35880.1" /db_xref="GI:1036436400" /translation="MSGRKAQGRTLGVNMVRRGVRSLSNKIKQKTKQIGNRPGPSRGV QALIFFFLFNILTGKKLTAHLKKLWRMLDPRQGLAVLRKVKRVVASLMRGLASRKRRS NEMALFPLLLLGLLALSGGVTLVRKNRWLLLNVTAEDLGKTFSVGTGNCTTNILEAKY WCPDSMEYNCPNLSPREEPDDIDCWCYGVENVRVAYGRCDAVGRSKRSRRAIDLPTHE NHGLKTRQEKWMTGRMGERQLQKIERWLVRNPFFAVTALAIAYLVGNNTTQRVVIALL VLAVGPAYSAHCIGITDRDFIEGVHGGTWVSATLEQDKCVTVMAPDKPSLDISLQTVA IDGPAEARKVCYSAVLTHVKINDKCPSTGEAHLAEENDGDNACKRTYSDRGWGNGCGL FGKGSIVACAKFTCAKSMSLFEVDQTKIQYVIRAQLHVGAKQENWNTDIKTLKFDALS GSQEAEFTGYGKATLECQVQTAVDFGNSYIAEMEKDSWIVDRQWAQDLTLPWQSGSGG IWREMHHLVEFEPPHAATIRVLALGNQEGSLKTALTGAMRVTKDENDNNLYKLHGGHV SCRVKLSALTLKGTSYKMCTDKMSFVKNPTDTGHGTVVMQVKVPKGAPCKIPVIVADD LTAAVNKGILVTVNPIASTNDDEVLIEVNPPFGDSYIIVGTGDSRLTYQWHKEGSSIG KLFTQTMKGAERLAVMGDAAWDFSSAGGFFTSVGKGIHTVFGSAFQGLFGGLSWITKV IMGAVLIWVGINTRNMTMSMSMILVGVIMMFLSLGVGADQGCAVNFGKRELKCGDGIF VFRDSDDWLTKYSYYPEDPVKLASIIKASHEEGKCGLNSVDSLEHEMWRSRADEINAI FEENEVDISVVVQDPKNIYQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIID GKSRKECPFSNRVWNSFQIEEFGMGVFTTRVFMDATFDYSVDCDGAILGAAVNGKKSA HGSPTFWMGSHEVNGTWMIHTLETLDYKECEWPLTHTIGTSVEESDMFMPRSIGGPVS SHNRIPGYKVQTNGPWMQVPLEVKREVCPGTSVVVDSNCDGRGKSTRSTTDSGKIIPE WCCRSCTMPPVSFHGSDGCWYPMEIRPMKTSDSHLVRSWVTAGEVHAVPFGLVSMMIA MEVVLRRRQGPKQMLVGGVVLLGAMLVGQVTVLDLVKFVVAVGLHFHEINNGGDAMYM ALIASFSIRPGLLMGFGLRTLWSPRERLVMAFGAAMVEIALGGMMGGLWQYLNAVSLC VLTINAISSRKASNMILPLMALMTPMTMHEVRMATMLFCTVVIIGVLHQNSKDTSMQK TIPIVALTLTSYMGLTQPFLGLCAYMSTQVFGRRSIPVNEALAAAGLVGVLAGLAFQD MENFLGPIAVGGILMMLVSVAGRVDGLELRKLGEISWEEEAEISGSSSRYDVALSEQG EFKLLSEDKVPWDQIVMTSLALVGAAIHPFALLLVLGGWILHIKGARRSGDVLWDIPT PKVIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLLRNGKKLV PSWASVKEDLVAYGGSWKLDGRWDGEEEVQLIAAVPGKSVVNVQTKPSLFKVKNGGEI GAVALDYPSGTSGSPIVNRNGEVVGLYGNGILVGDNSFVSAISQTELKEESKEELQEI PTMLKKGMTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFQG LDVKFHTQAFSAHGSGKEVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIA ARGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWTTGHEWILA DKRPTAWFLPSIRAANVMAASLRKAGKNVVVLNRKTFEKEYPTIKQKKPDFILATDIA EMGANLCVERVLDCRTAYKPVLVDEGKKVAIKGPLRISASSAAQRRGRIGRNPNRDGD SYYYSEPTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGIEGTKTPVSPGEMRLRDD QRRVFRELVRGCDLPVWLAWQVAKAGLKTNDRKWCFEGPEEHEILNDNGETVKCRSPG GAKRALRPRWCDERVSSDQSALADFIKFAEGRRGAAEMLVILTELPDFLAKKGGEAMD TISVFLHSEEGSRAYRNALSMMPEAMTIVMLFLLAGLLTSGAVIFFMSPKGMSRMSMA MGTMAGSGYLMFLGGVKPTHISYVMLIFFVLMVVIIPEPGQQRSIQDNQVAYLIIGIL TLLSVVAANELGMLEKTKEDFFGKRDITTPSGAIPWSWPDLDLKPGAAWTVYVGIVTM LSPMLHHWIKVEYGNLSLSGIAQSASVLSFMDKGIPFMKMNISVVILLVSGWNSITVI PLLCGIGGAMLHWTLILPGIKAQQSKLAQKRVFHGVAKNPVVDGNPTADIEEAPEMPA LYEKKLALYLLLALSLMSVAMCRTPFSLAEGIVLSSAALGPLIEGNTSLLWNGPMAVS MTGVMRGNYYAFVGVMYNLWKMKTGRRGRASGKTLGEVWKRELNLLDKQQFEMYKRTD IIEVDRDMARRHLAEGKVDTGVAVSRGTAKLRWFHERGYVKLEGRVTDLGCGRGGWCY YAAAQKEVSGVKGYTLGRDGHEKPMNVQSLGWNIVTFKDKTDIHRLEPLKCETLLCDI GESSPSSATEGERTLRVLDTVEKWLACGVDNFCIKVLAPYMPDVIEKLELLQRRFGGT VIRNPLSRNSTHEMYYVSGARSNITFTVNQTSRLLMRRMRRPTGKVTLEADVILPIGT RSVETDKGPLDKDAIEERVERIKNEYATTWFYDNDNPYRTWHYCGSYVTKTSGSAASM INGVIKILTFPWDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVN RWLFRHLSREKNPRLCTKEEFIAKVRSHAAVGAFLEEQEQWKTANEAVLDPKFWEMVD AERKLHQQGRCQSCVYNMMGKREKKLSEFGKAKGSRAIWYMWLGARFLEFEALGFLNE DHWASRENSGGGVEGIGLQYLGYVIRDLSTKEGGGFYADDTAGWDTRITEADLDDEQE IMSYMSPEQRKLAWAIMEMTYKNKVVKVLRPAPGGKAFMDIISRRDQRGSGQVVTYAL NTITNLKVQLIRMAEAEMVINHQHVQECGENVLERLETWLAENGCDRLSRMAVSGDDC VVRPVDDRFGLALSHLNAMSKVRKDISEWQPSKGWTDWENVPFCSHHFHELVLKDGRK IVVPCRDQDELIGRGRVSPGNGWMIKETACLSKAYANMWSLMYFHKRDMRLLSFAVSS AVPTAWVPSGRTTWSVHGRGEWMTTEDMLDVWNRVWVLNNPHMTDKTTIKEWRDVPYL TKRQDKLCGSLIGMTNRATWASHIHLVIHRIRTLIGQEKFTDYLTVMDRYSVDADLQP GELI" ORIGIN 1 agtaaatccc tgtgtgctaa ttgaggtgca ttggtctgca aatcgagttg ctaggcaata 61 aacacatttg gattaatttt aatcgctcaa tgagcgatta gcagagaact gaccagagaa 121 atgtctggtc gaaaagctca gggtagaacc ctgggcgtca atatggtaag acgaggggtt 181 cgctccttgt caaacaaaat aaaacaaaaa acaaaacaga ttggaaacag acctggccct 241 tcaagaggtg ttcaagcatt aattttcttc tttttgttta acattctgac tgggaaaaag 301 ttgactgctc atctaaaaaa actctggagg atgcttgatc caaggcaggg acttgctgta 361 ctgcgaaagg tcaaaagagt tgtagctagc ttaatgagag gactggcttc caggaaacgt 421 agatccaatg aaatggcctt gtttccactc ttgttactgg gtttgttggc tctatcagga 481 ggagtgaccc tcgtcagaaa gaacagatgg ttgctcctga atgtaactgc tgaagacctg 541 gggaaaacgt tttcagtggg aactgggaat tgcaccacga atattctgga agcaaaatac 601 tggtgccccg actcaatgga atacaattgc cccaatctca gtccaagaga agagccagat 661 gacatagatt gctggtgtta tggagtggaa aatgtcagag tggcctatgg aagatgtgat 721 gcggtagggc gatcaaaacg ctccaggaga gcgattgatc tacccacaca tgagaaccat 781 ggactaaaga ctcggcagga gaagtggatg acaggcagaa tgggtgagag gcagctccag 841 aagattgaaa gatggctggt taggaatcca ttttttgcgg tcacagcatt ggcaatagcc 901 tatctggtgg gtaacaacac gacacaacga gtggtcatag cactactggt tctagcggtt 961 ggtccagcgt actctgccca ttgcataggg ataaccgaca gagatttcat tgaaggtgtc 1021 catgggggca cttgggtgtc agccactctg gagcaggaca aatgcgtgac tgtaatggcc 1081 cctgacaaac cttctctgga catctcacta caaacagtgg caatcgatgg accggctgaa 1141 gcgaggaagg tttgctacag tgcagtccta acccatgtga agatcaatga caaatgcccg 1201 agcactggtg aggcccacct tgcagaggaa aatgatggtg acaatgcttg taaacggaca 1261 tattctgaca gaggctgggg caatggctgt ggtctttttg ggaaaggaag catcgtggct 1321 tgtgccaagt ttacatgtgc caaatctatg agtctctttg aggtggatca gaccaaaatc 1381 caatatgtca tcagggccca gctccatgtg ggtgccaaac aggaaaactg gaacacagac 1441 ataaaaacgc tgaaatttga tgctctttct ggctcacagg aggctgaatt cactggttat 1501 ggaaaggcaa cactagagtg tcaggtccag actgccgtgg actttgggaa cagctacatc 1561 gcagagatgg aaaaagatag ctggatcgtt gaccgccaat gggcacagga cttgacactg 1621 ccatggcaga gtgggagtgg tggcatatgg agagaaatgc accaccttgt tgagtttgag 1681 cccccacatg ctgccacaat tagggtgctg gccttgggca atcaagaagg ctccttgaag 1741 accgctctca caggcgctat gcgcgtcacc aaggatgaga atgacaacaa cttgtacaaa 1801 ctgcacggtg gtcacgtctc ctgtagagtg aaactgtcag ccctcactct caaaggaaca 1861 tcctacaaga tgtgcacaga caaaatgtca tttgtcaaga atccaacgga tacagggcat 1921 ggcacagttg tcatgcaagt aaaggtcccc aaaggggccc catgcaagat tcctgtgatt 1981 gtggcagatg acctaacggc agcagtgaac aaaggcatct tggtcactgt caatcctatt 2041 gcatccacaa atgatgatga agttctgatt gaggtcaatc ccccttttgg ggatagctac 2101 atcatagttg ggactggaga ctcacgactg acctatcagt ggcacaaaga agggagttca 2161 ataggaaaat tgttcacaca gacaatgaaa ggagctgaac gtcttgcagt gatgggtgat 2221 gctgcttggg attttagttc tgctgggggg ttcttcacat ctgtgggaaa aggaatccat 2281 accgtgtttg gctcggcctt ccaggggctg tttggtggct tgagttggat cacgaaagtc 2341 atcatgggag ccgtgctcat ctgggtggga ataaacaccc gcaacatgac catgtccatg 2401 tccatgatct tggtaggtgt gatcatgatg tttctttcac taggagttgg ggctgaccaa 2461 ggatgtgctg ttaactttgg gaaacgcgag ctcaaatgcg gagatggcat ctttgtgttt 2521 agagactctg atgactggct cacaaagtac tcatactatc ctgaagaccc tgtcaaattg 2581 gcatccatca ttaaagcctc ccacgaggag ggcaaatgtg gattgaattc agttgattcc 2641 ctcgaacacg agatgtggag gagtagggcg gatgagatca acgccatttt tgaagaaaat 2701 gaagtagaca tctcggtcgt cgtccaagac ccaaagaaca tctaccaaag agggacccac 2761 ccgttctcaa ggatccgtga cggattgcag tatggatgga agacctgggg aaaaaacctt 2821 gttttctcac cagggaggaa gaacggcagc ttcatcattg acgggaagtc acgaaaggag 2881 tgccccttct ctaacagagt gtggaactca ttccagattg aggagtttgg catgggggtc 2941 ttcacaacac gagtgtttat ggacgcgacc tttgactatt cagtggactg tgatggagcc 3001 atcctgggtg cagcggtaaa tggaaagaag agtgcccatg gatcacccac attttggatg 3061 ggaagtcatg aagtcaatgg aacgtggatg atacacactt tggaaactct tgattacaag 3121 gagtgtgaat ggccactgac acacactatt ggaacctcag tagaagaaag tgacatgttc 3181 atgccccggt ccattggagg tccggtgagt tctcacaacc gcatcccggg ttacaaggtg 3241 caaaccaatg ggccatggat gcaagtcccc ctggaagtaa aaagggaagt ctgtccaggg 3301 acaagcgtgg tggtggactc caactgtgat ggacgtggaa aatcaacgag atcaaccact 3361 gacagtggga aaataatccc ggaatggtgt tgcagatctt gtactatgcc tccagtcagc 3421 ttccatggaa gcgatggttg ttggtatcct atggagatca gacccatgaa aacatccgac 3481 agccacctag tgagatcctg ggtgactgca ggagaagttc atgcagtacc ctttggactg 3541 gtgagcatga tgattgccat ggaggtggtg ttgcgcagaa ggcaaggacc aaaacaaatg 3601 ctggtaggag gagttgtgct gcttggagcg atgttagtgg gacaagtcac agtcttagac 3661 cttgtgaagt ttgttgtggc agtgggattg cacttccatg aaattaataa cggaggagat 3721 gccatgtaca tggcattgat tgccagcttt tccatccggc caggcctgct catgggcttt 3781 gggctgcgca cactgtggag tcctcgcgag cgacttgtaa tggcatttgg agcagccatg 3841 gttgagattg ccttaggtgg aatgatgggt gggctttggc agtacttgaa cgccgtttca 3901 ctgtgtgtgc tcaccataaa tgcaatctca tcaaggaagg cctcaaatat gatcctcccc 3961 ctgatggcac tcatgactcc catgacaatg catgaggtga ggatggcgac gatgctgttc 4021 tgcactgttg tcataatagg ggtgcttcat cagaattcaa aagacacatc tatgcaaaag 4081 accattccca ttgtagccct gacactgacc tcatacatgg gcttgaccca gccctttcta 4141 gggctgtgtg catacatgtc cacgcaggtg tttggcagaa ggagtatacc tgtgaatgaa 4201 gccttggcag cggctggctt ggtgggagtg ctagcagggc tagccttcca agacatggaa 4261 aactttttgg gtccaatagc ggtggggggg atcctcatga tgttagttag tgtggcaggg 4321 agagttgatg gactagagct caggaaactt ggtgaaatct cctgggaaga agaagctgaa 4381 ataagtggaa gctctagccg ctatgatgtg gcactcagtg agcagggtga atttaaactc 4441 ctctcagagg acaaagtgcc ctgggaccag atagtaatga catccctagc cctcgtggga 4501 gcagccatac atccatttgc cctcttgctg gtcttgggag gatggatcct gcacattaaa 4561 ggtgctagga ggagtgggga tgttctttgg gacattccta cgccaaaggt gattgaggaa 4621 tgtgagcacc tggaggatgg gatctatggc atatttcagt caaccttcct tggagcctcg 4681 cagcgaggtg ttggagtggc gcagggaggg gtcttccaca caatgtggca tgtcactagg 4741 ggggcattcc tcttgaggaa tggaaagaaa ctggttccgt cttgggcttc tgtgaaggag 4801 gatctggtgg cttatggtgg ttcctggaaa ctagacggga gatgggatgg tgaggaggaa 4861 gtccaactca tcgctgctgt gcctggaaaa tctgttgtca acgttcaaac aaaaccaagc 4921 ttgttcaaag tgaaaaatgg tggtgagatt ggagcagttg ctctagacta ccccagtgga 4981 acctcaggct cccccattgt gaaccgaaat ggtgaagtgg ttgggctcta tggcaatgga 5041 attctggtgg gtgataactc ctttgtgtct gccatctcac aaactgaatt gaaggaagaa 5101 tccaaagaag aactgcaaga aataccaact atgctgaaaa aaggaatgac caccatcctt 5161 gacttccacc ctggggcggg gaaaacccgt aggttcctgc ctcaaatatt ggcggagtgt 5221 gccagaaggc gtttgcgcac tctggtatta gcacccacca gggttgtttt gtcagagatg 5281 aaagaagctt ttcaggggtt ggatgtgaaa ttccacacac aagctttctc agcccatggg 5341 agtgggaagg aggtcattga cgcaatgtgc catgcaaccc ttacatatag aatgctggaa 5401 ccaacaaggg tagtcaactg ggaggtcatt attatggatg aggcgcactt tctggatcct 5461 gctagcatag cagcgagagg ctgggcggct catagagcaa gagcaaatga gagcgccacc 5521 atacttatga ccgccacccc accaggcacc agtgacgaat tccctcactc caatggtgag 5581 attgaggacg tccagactga catccccagc gagccatgga ccacaggaca tgaatggatc 5641 ttggcggaca agcgcccaac tgcatggttc cttccatcga tcagagcagc aaatgtcatg 5701 gcagcctcgc tgcggaaagc gggaaaaaat gtggtggtac tgaataggaa aacctttgaa 5761 aaggagtacc ccaccattaa gcagaagaaa ccggatttca tccttgccac cgatatcgct 5821 gagatgggag caaacttgtg tgtggagaga gtcttggact gcagaactgc ctacaagcct 5881 gtcctggttg atgaagggaa gaaggtggct atcaaagggc cgctacgaat ctcagcgtca 5941 tcggccgctc agaggagagg acgcattgga cgcaatccca acagagatgg tgactcttac 6001 tactactcag aacctaccag tgaggacaat gcacaccatg tgtgctggct ggaggcttcc 6061 atgctcctgg ataacatgga ggttagaggg gggatggttg ctccacttta tggcattgag 6121 ggaacaaaga ctcccgtctc tccaggagaa atgaggctaa gagatgatca gagaagggtc 6181 tttagagagt tggtgcgagg gtgtgatttg ccagtgtggt tggcatggca agtggcaaaa 6241 gccggcctga agaccaatga ccgcaaatgg tgttttgagg gtcccgaaga gcatgaaata 6301 ctcaatgaca atggtgaaac agtaaagtgt agatctccgg gcggagcaaa aagagcattg 6361 agacctagat ggtgtgacga gagagtttcc tcagaccaga gtgccttggc tgacttcatt 6421 aagtttgcag aaggtagaag aggggctgct gagatgcttg tgatcctcac ggagttgccc 6481 gacttcctgg caaagaaggg tggggaagcc atggatacca tcagtgtgtt cctacattct 6541 gaagagggtt caagagcgta cagaaatgcc ctgtcaatga tgccagaagc catgaccatt 6601 gtcatgctct tcctgcttgc cggactcttg acctcaggag cggtgatttt cttcatgtcg 6661 ccaaaaggca tgagtagaat gtcaatggca atgggtacca tggctggcag tggatatctc 6721 atgtttctgg ggggagtaaa accaacccac atctcttacg tcatgttaat attctttgtc 6781 ctcatggtcg tcataattcc cgaaccagga cagcagagat caatccagga taaccaagtt 6841 gcctacctca taattgggat cttgacattg ttatcagttg tggcagctaa tgaactaggg 6901 atgctggaga agaccaagga agattttttt ggaaagagag acatcacaac accaagtggg 6961 gcaatcccat ggagttggcc tgacctggat ctgaaacctg gggcggcctg gacagtctat 7021 gtgggaatcg tgacgatgtt gtctcccatg ttacaccatt ggataaaagt tgagtatggc 7081 aatttgtcac tatcgggaat agcccaatct gcctcagttc tttcatttat ggacaaagga 7141 attcccttca tgaaaatgaa tatatctgtg gtcatacttt tggtcagtgg ctggaattca 7201 atcacagtga tccctctttt gtgcggcatt ggtggagcca tgctgcactg gacgctcata 7261 cttcctggga ttaaagccca gcaatcaaag ctggctcaaa aaagagtttt tcatggagtg 7321 gcaaaaaatc cagttgttga tggcaatcca actgctgaca ttgaggaagc cccagaaatg 7381 ccagctttat atgaaaagaa gctggctctt tacctccttc tggccctaag cctcatgtca 7441 gttgccatgt gcagaacccc tttttcctta gcggaaggaa tagtactgtc atctgccgcc 7501 cttggacctc tcattgaggg gaacactagt ctgttgtgga atggcccaat ggccgtttcc 7561 atgactggag tcatgcgtgg caactactac gcttttgtgg gagtcatgta caatctctgg 7621 aaaatgaaaa cagggcgtag agggagagca agtggaaaaa cattgggtga ggtctggaag 7681 cgtgaactta acttgctaga caaacaacaa tttgaaatgt acaaaagaac agacatcatt 7741 gaggtggacc gagacatggc acgacgacac ttggcagagg gaaaggtgga cacgggagtg 7801 gccgtgtcga gagggactgc aaagctgaga tggttccacg agcgtggcta tgtgaagcta 7861 gaaggaaggg tcaccgatct tgggtgtgga cgtggaggct ggtgctacta tgcagcagct 7921 caaaaagaag ttagtggtgt gaaggggtat acccttggca gagatggcca tgagaaacct 7981 atgaatgtcc aaagcttggg atggaatatt gtgactttta aggacaagac tgatattcac 8041 cgactggagc cactcaagtg tgaaactctc ctctgtgaca tcggagaatc gtccccatcc 8101 tccgcaactg agggtgagag gaccttaaga gttctggaca cagttgaaaa gtggttggct 8161 tgtggagtgg ataacttttg catcaaagtt ctggcaccat acatgcccga tgtgatagag 8221 aaactggagc ttcttcaaag aagattcggt ggaaccgtca tcaggaatcc tctgtccaga 8281 aattctactc atgaaatgta ctacgtttca ggagcaagaa gtaacatcac attcacagtt 8341 aaccagacat cacgcctgct gatgcgaagg atgaggcggc ccacaggcaa agttaccttg 8401 gaagctgatg tcattcttcc gataggcacg cgcagtgtgg aaactgataa aggcccattg 8461 gataaggatg ctattgagga aagagttgag agaatcaaga atgaatatgc cactacatgg 8521 ttctatgaca atgacaaccc gtatagaacg tggcattatt gtggctccta tgtgaccaaa 8581 acgtcaggaa gtgcagccag catgataaat ggagtcatca aaatcttgac ttttccatgg 8641 gacaggatag aagaagtcac aagaatggca atgactgaca ccacaccttt tggacaacaa 8701 agagttttca aggagaaagt agacacaaga gcaaaagacc ctcctgctgg aacaaggaag 8761 atcatgaagg tggtgaatag atggttgttt cggcatctgt ccagggagaa gaaccccagg 8821 ttgtgcacca aagaagaatt cattgccaaa gtacggagcc atgcagcagt gggggctttt 8881 ctagaggaac aagagcagtg gaaaacggcc aatgaggcag tccttgatcc aaagttttgg 8941 gaaatggtcg atgcagaacg caaacttcat cagcaggggc gatgccaatc ctgtgtgtac 9001 aacatgatgg gaaagaggga aaagaaactc tctgaatttg gaaaggccaa agggagccgt 9061 gctatctggt acatgtggct tggggcacgg ttccttgagt ttgaagctct tgggttttta 9121 aatgaagatc actgggcctc ccgggagaac tcggggggag gagttgaggg cataggactc 9181 cagtacttgg gctatgttat cagggacttg tcaaccaaag aaggtggagg gttttatgcg 9241 gatgacacgg cagggtggga cacacgcatc acagaagctg acctggatga cgagcaagag 9301 atcatgagtt acatgagccc tgaacaaagg aagctggcct gggctataat ggaaatgaca 9361 tacaagaaca aagtggttaa ggtgctgagg ccagccccag gaggcaaggc cttcatggac 9421 atcatcagcc ggagagacca aagggggtca ggacaagttg tgacatacgc cctcaacacc 9481 ataaccaatc taaaagtcca gctcataaga atggctgaag ctgaaatggt gatcaaccat 9541 cagcatgtgc aggagtgtgg tgaaaatgtc ttagagcggc ttgaaacttg gcttgctgaa 9601 aacggatgtg acagattgag ccgaatggct gtgagtgggg atgattgtgt tgtgagaccg 9661 gtggatgaca gatttggcct ggccctttcc catcttaatg caatgtccaa agttaggaag 9721 gacatttcag aatggcaacc ctccaaagga tggacagatt gggaaaatgt tcctttctgc 9781 tcccaccact tccatgaact ggtgttgaaa gatgggagga agatagtggt gccttgcaga 9841 gatcaagatg aactgatagg gagagggaga gtgtccccag gaaatggctg gatgatcaag 9901 gaaacagcct gcctcagcaa agcttacgca aacatgtggt cactgatgta ctttcacaag 9961 agggacatga ggctactttc attcgctgtc tcctccgctg ttccaacggc ctgggtgccc 10021 agtggaagga caacgtggtc tgtccacgga agaggggagt ggatgacaac tgaggacatg 10081 ctagatgtct ggaacagggt gtgggtgttg aataacccgc acatgacgga caaaacaacc 10141 atcaaggagt ggagagatgt tccctacctc acaaagagac aggataagct ttgcgggtca 10201 ctgataggaa tgacaaacag ggccacatgg gcatctcaca tccaccttgt gatccaccgg 10261 atcagaactc taataggtca agagaagttc acagactacc tcaccgtcat ggacaggtat 10321 tctgttgatg ccgaccttca gccaggagag cttatctgag acattacaac atggaaaacc 10381 gggataaaaa ctacgggtgg agaaccggac tccccacttg agaaatgtaa ataaaaaacc 10441 gggataaaaa caacggatgg agaaccggac tccacactga ataggctata aacgtcagcc 10501 caggatccaa aatttgaatg ggtcttgcca ccgctaagct gtgaggcggt gcgggctggg 10561 acagccgttt cccgggcaac gacatgcctg gtttctggga cttcccaacc cggagtaaaa 10621 cgaaggagcc tccgccacca ccctcccacg gggtgttgga aagatggggt ctagaggtta 10681 gaggagaccc tccagggaaa ttagtgggac catattgacg ccagggaaag accggagtgg 10741 ttctctgctt ttcctccagg ggtctgcgag cacagtttgc tctagaagaa gcagaccttt 10801 ggatgacaaa acacaaaacc act

LOCUS KU921608 10823 bp RNA linear VRL 20-JUN-2016 DEFINITION Yellow fever virus isolate CNYF01/2016, complete genome. ACCESSION KU921608 VERSION KU921608.1 GI:1036436399 KEYWORDS . SOURCE Yellow fever virus (YFV) ORGANISM Yellow fever virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Yellow fever virus group. REFERENCE 1 (bases 1 to 10823) AUTHORS Liu,L. TITLE Complete Genome Sequence of Yellow Fever virus isolate CNYF01/2016 from First Imported Case in China mainland, March 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10823) AUTHORS Liu,L. TITLE Direct Submission JOURNAL Submitted (13-MAR-2016) Department of Viral Hemorrhagic Fever, National Institute for Viral Diseases Control and Prevention, Changbai Road 155, Beijing 102206, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC genomic Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10823 /organism="Yellow fever virus" /mol_type="genomic RNA" /isolate="CNYF01/2016" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:11089" /country="China" /collection_date="10-Mar-2016"

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