NLCQCP releases H5 sequence from 2015 vaccine resistant fatal infection.

Isolate name:

A/chicken/F611/Egypt/2015(H5N1)

Isolate ID:   EPI_ISL_192547      Passage details/history:   c1

Type:   A / H5N1      Lineage:

Sample information

 

Collection date:   2015-01-07      Host   Gallus gallus      Additional host information:         Domestic status:   Domestic      Is vaccinated:   Y

Location:   Egypt / Sharqia      Additional location information:   Zagazig      Health status:   Dead      Specimen source:   Tracheal swab      Strain or commercial product name used for vaccination:   H5N2 vaccine (VOLVAC)

Institute information

 

Originating lab:   National Laboratory for Veterinary Quality Control on Poultry production- Animal Health Research Inistitute   Sample ID given by the sample provider:   F611

Address:   National Laboratory for Veterinary Quality Control on Poultry production- Animal Health Research Inistitute Nadi-Elsaid 12618 Dokki Egypt

Submitting lab:   Faculty of Veterinary - Zagazig University   Sample ID given by the submitting laboratory:   F611      Authors:

Address:   Faculty of Veterinary - Zagazig University Avian and Rabbit Diseases El-Shohada, Qesm Awal AZ Zagazig Egypt

Publication

Publication

In vivo antiviral resistance

 

• Phenotype
• Genotype
• Unspecified

Antiviral resistance tested by experimental procedures

Adamantanes:

Unknown

Oseltamivir:

Unknown

Zanamivir:

Unknown

Peramivir:

Unknown

Other:

Unknown    Sequence   segment identifier length accession # INSDC Sequence   HA   A/chicken/F611/Egypt/2015(H5N1)   1642   EPI628911         Submitter information   Submitter:   El-Didamoney, Reham Mohamed      Submission Date:   2015-08-07      Last modifier:   El-Didamoney, Reham Mohamed      Last modified:   2015-08-07      Address:   Faculty of Veterinary - Zagazig University Avian and Rabbit Diseases El-Shohada, Qesm Awal AZ Zagazig Egypt

Align	Segment-ID	Name	Score	E-Value	Identity
	EPI628911	A/chicken/F611/Egypt/2015(H5N1) (A/H5N1) segment 4 (HA)	3029.6	0.000000e+00	1642/1642 (100%)
	EPI584778	A/chicken/Egypt/A10351A/2014 (A/H5N1) segment 4 (HA)	2990.8	0.000000e+00	1634/1642 (99%)
	EPI573250	A/chicken/Egypt/AR234-FAOF8NLQP/2014 (A/H5N1) segment 4 (HA)	2990.8	0.000000e+00	1634/1642 (99%)
	EPI573328	A/chicken/Egypt/14168CA/2014 (A/H5N1) segment 4 (HA)	2985.3	0.000000e+00	1631/1639 (99%)
	EPI573321	A/chicken/Egypt/153AF/2015 (A/H5N1) segment 4 (HA)	2985.3	0.000000e+00	1633/1642 (99%)
	EPI573252	A/Turkey/Egypt/AR235-S240NLQP/2014 (A/H5N1) segment 4 (HA)	2985.3	0.000000e+00	1633/1642 (99%)
	EPI573244	A/chicken/Egypt/AR231-CA113NLQP/2014 (A/H5N1) segment 4 (HA)	2985.3	0.000000e+00	1633/1642 (99%)
	EPI579006	A/chicken/Egypt/CLEVB-1_N00215/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1632/1642 (99%)
	EPI573315	A/duck/Egypt/BS-146RS-f6/2014 (A/H5N1) segment 4 (HA)	2981.6	0.000000e+00	1631/1640 (99%)
	EPI579781	A/duck/Egypt/CLEVB-25_N00239/2015 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
	EPI579780	A/duck/Egypt/CLEVB-24_N00238/2015 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
	EPI574132	A/Egypt/MOH-NRC-7305/2014 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
	EPI573268	A/Turkey/Egypt/AR238-SD177NLQP/2014 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
	EPI573248	A/chicken/Egypt/AR233-S283NLQP/2014 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
	EPI557138	A/Quail/Egypt/BSU5514-AR2219/2014 (A/H5N1) segment 4 (HA)	2979.8	0.000000e+00	1632/1642 (99%)
	EPI579784	A/chicken/Egypt/CLEVB-18_N00232/2015 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
	EPI579783	A/chicken/Egypt/CLEVB-21_N00235/2015 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
	EPI579782	A/chicken/Egypt/CLEVB-20_N00234/2015 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
	EPI579520	A/chicken/Egypt/CLEVB-17_N00231/2015 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
	EPI579325	A/chicken/Egypt/CLEVB-16_N00230/2014 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
	EPI579324	A/chicken/Egypt/CLEVB-19_N00233/2015 (A/H5N1) segment 4 (HA)	2974.2	0.000000e+00	1631/1642 (99%)
	EPI573330	A/chicken/Egypt/1476CA/2014 (A/H5N1) segment 4 (HA)	2972.4	0.000000e+00	1630/1641 (99%)
	EPI573318	A/chicken/Egypt/1478CAL/2014 (A/H5N1) segment 4 (HA)	2968.7	0.000000e+00	1622/1630 (99%)
	EPI573260	A/Duck/Egypt/AR236-A3NLQP/2015 (A/H5N1) segment 4 (HA)	2968.7	0.000000e+00	1630/1642 (99%)
	EPI573322	A/chicken/Egypt/152RS/2015 (A/H5N1) segment 4 (HA)	2963.1	0.000000e+00	1628/1641 (99%)
	EPI608783	A/turkey/Israel/188/2015 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1616/1624 (99%)
	EPI608778	A/chicken/Israel/88/2015 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1616/1624 (99%)
	EPI608777	A/turkey/Israel/107/2015 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1616/1624 (99%)
	EPI574125	A/Egypt/MOH-NRC-7271/2014 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1628/1642 (99%)
	EPI573246	A/Duck/Egypt/AR232-A13NLQP/2014 (A/H5N1) segment 4 (HA)	2957.6	0.000000e+00	1628/1642 (99%)
	EPI573319	A/chicken/Egypt/152/2015 (A/H5N1) segment 4 (HA)	2955.8	0.000000e+00	1625/1638 (99%)
	EPI608786	A/turkey/Israel/209/2015 (A/H5N1) segment 4 (HA)	2952.1	0.000000e+00	1615/1624 (99%)
	EPI608781	A/turkey/Israel/274/2015 (A/H5N1) segment 4 (HA)	2952.1	0.000000e+00	1615/1624 (99%)
	EPI608780	A/turkey/Jenin/39/2015 (A/H5N1) segment 4 (HA)	2952.1	0.000000e+00	1615/1624 (99%)
	EPI608784	A/chicken/Israel/333/2015 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1614/1624 (99%)
	EPI608782	A/turkey/Israel/174/2015 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1614/1624 (99%)
	EPI608779	A/chicken/Qalqilya/53/2015 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1614/1624 (99%)
	EPI584783	A/Egypt/MOH-NRC-8434/2014 (A/H5N1) segment 4 (HA)	2946.5	0.000000e+00	1626/1642 (99%)
	EPI608787	A/spur-winged lapwing/Israel/101/2015 (A/H5N1) segment 4 (HA)	2941.0	0.000000e+00	1613/1624 (99%)
	EPI574389	A/Turkey/Egypt/14240FAOS/2014 (A/H5N1) segment 4 (HA)	2935.4	0.000000e+00	1616/1629 (99%)
	EPI550493	A/duck/Egypt/14VIR784-4-133AD/2013 (A/H5N1) segment 4 (HA)	2935.4	0.000000e+00	1624/1642 (98%)
	EPI557194	A/Duck/Egypt/NLQP27SG-AR750/2013 (A/H5N1) segment 4 (HA)	2924.4	0.000000e+00	1622/1642 (98%)
	EPI557178	A/chicken/Egypt/NLQP33SD-AR748/2013 (A/H5N1) segment 4 (HA)	2918.8	0.000000e+00	1622/1643 (98%)
	EPI608785	A/chicken/Israel/156/2015 (A/H5N1) segment 4 (HA)	2913.3	0.000000e+00	1608/1624 (99%)
	EPI500079	A/goose/Egypt/M7221D/2013 (A/H5N1) segment 4 (HA)	2913.3	0.000000e+00	1620/1642 (98%)
	EPI500078	A/chicken/Egypt/M7217A/2013 (A/H5N1) segment 4 (HA)	2913.3	0.000000e+00	1620/1642 (98%)
	EPI487342	A/chicken/Egypt/M7217B/2013 (A/H5N1) segment 4 (HA)	2913.3	0.000000e+00	1620/1642 (98%)
	EPI557218	A/chicken/Egypt/NLQP139V-AR753/2013 (A/H5N1) segment 4 (HA)	2907.7	0.000000e+00	1619/1642 (98%)
	EPI500109	A/chicken/Egypt/Q5283C/2012 (A/H5N1) segment 4 (HA)	2904.1	0.000000e+00	1618/1642 (98%)
	EPI603916	A/duck/Egypt/154FAOFL/2015 (A/H5N1) segment 4 (HA)	2902.2	0.000000e+00	1595/1607 (99%)
	EPI573314	A/chicken/Egypt/14148CA/2014 (A/H5N1) segment 4 (HA)	2902.2	0.000000e+00	1594/1606 (99%)
	EPI504991	A/chicken/Egypt/BSU-BS-R24/2012 (A/H5N1) segment 4 (HA)	2902.2	0.000000e+00	1618/1642 (98%)
	EPI504990	A/chicken/Egypt/BSU-BS-F27/2012 (A/H5N1) segment 4 (HA)	2902.2	0.000000e+00	1618/1642 (98%)
	EPI348153	A/chicken/Egypt/11VIR4453-266/2010 (A/H5N1) segment 4 (HA)	2898.5	0.000000e+00	1617/1642 (98%)
	EPI603915	A/duck/Egypt/153AL/2015 (A/H5N1) segment 4 (HA)	2896.7	0.000000e+00	1585/1594 (99%)
	EPI597822	A/duck/Egypt/1471SG/2014 (A/H5N1) segment 4 (HA)	2896.7	0.000000e+00	1618/1643 (98%)
	EPI573317	A/chicken/Egypt/1575S/2015 (A/H5N1) segment 4 (HA)	2896.7	0.000000e+00	1593/1606 (99%)
	EPI500082	A/duck/Egypt/M7218B/2013 (A/H5N1) segment 4 (HA)	2896.7	0.000000e+00	1618/1643 (98%)
	EPI340133	A/goose/Egypt/1117SF/2011 (A/H5N1) segment 4 (HA)	2896.7	0.000000e+00	1617/1642 (98%)
	EPI600754	A/chicken/Egypt/N05832-CLEVB754/2011 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1616/1642 (98%)
	EPI597815	A/turkey/Egypt/1438S/2014 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1616/1642 (98%)
	EPI538767	A/chicken/Egypt/13VIR-2962-109/2013 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1616/1642 (98%)
	EPI340135	A/chicken/Egypt/1113/2011 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1616/1642 (98%)
	EPI338733	A/duck/Egypt/M2583B/2010 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1617/1643 (98%)
	EPI338732	A/duck/Egypt/M2583C/2010 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1617/1643 (98%)
	EPI338616	A/duck/Egypt/M2583D/2010 (A/H5N1) segment 4 (HA)	2891.1	0.000000e+00	1617/1643 (98%)
	EPI573316	A/duck/Egypt/1427SL/2014 (A/H5N1) segment 4 (HA)	2887.4	0.000000e+00	1590/1604 (99%)
	EPI597818	A/chicken/Egypt/1461S/2014 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
	EPI597812	A/chicken/Egypt/1422S/2014 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
	EPI557136	A/Turkey/Egypt/BSU5114-AR2218/2014 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
	EPI372907	A/Egypt/N7562/2011 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1616/1643 (98%)
	EPI348152	A/chicken/Egypt/11VIR4453-268/2010 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
	EPI340138	A/duck/Egypt/1125S/2011 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
	EPI340101	A/chicken/Egypt/1112AF/2011 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
	EPI340087	A/duck/Egypt/11193SF/2011 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
	EPI340085	A/chicken/Egypt/1118AF/2011 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
	EPI338615	A/duck/Egypt/Q2645C/2010 (A/H5N1) segment 4 (HA)	2885.6	0.000000e+00	1615/1642 (98%)
	EPI538807	A/chicken/Egypt/13VIR-2962-200/2013 (A/H5N1) segment 4 (HA)	2883.7	0.000000e+00	1606/1629 (98%)
	EPI538791	A/chicken/Egypt/13VIR-2962-198/2013 (A/H5N1) segment 4 (HA)	2883.7	0.000000e+00	1606/1629 (98%)
	EPI603902	A/chicken/Egypt/1439CAL/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI603901	A/chicken/Egypt/1436CAL/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI597825	A/turkey/Egypt/1414CAL/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI597823	A/turkey/Egypt/14125S/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI597816	A/duck/Egypt/1435CAS/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1615/1643 (98%)
	EPI550507	A/duck/Egypt/14VIR784-8-1339S/2013 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI537618	A/Egypt/N01754/2014 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI373013	A/Egypt/N00166/2011 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1615/1643 (98%)
	EPI348160	A/chicken/Egypt/11VIR4453-267/2010 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI348158	A/chicken/Egypt/11VIR4453-109/VRLCU/2011 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI348157	A/chicken/Egypt/11VIR4453-15/VRLCU/2010 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI348155	A/chicken/Egypt/11VIR4453-68/VRLCU/2011 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI340151	A/chicken/Egypt/10513S/2010 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI340106	A/duck/Egypt/1110AF/2011 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI340104	A/chicken/Egypt/117AD/2011 (A/H5N1) segment 4 (HA)	2880.0	0.000000e+00	1614/1642 (98%)
	EPI348156	A/chicken/Egypt11VIR4453-269/2010 (A/H5N1) segment 4 (HA)	2878.2	0.000000e+00	1613/1642 (98%)
	EPI373020	A/Egypt/N08932/2010 (A/H5N1) segment 4 (HA)	2876.4	0.000000e+00	1613/1642 (98%)
	EPI348151	A/chicken/Egypt/11VIR4453-270/2010 (A/H5N1) segment 4 (HA)	2876.4	0.000000e+00	1613/1642 (98%)
	EPI597817	A/chicken/Egypt/1460S/2014 (A/H5N1) segment 4 (HA)	2874.5	0.000000e+00	1614/1643 (98%)
	EPI597814	A/chicken/Egypt/1429S/2014 (A/H5N1) segment 4 (HA)	2874.5	0.000000e+00	1613/1642 (98%)
	EPI460395	A/chicken/Egypt/1094/2010 (A/H5N1) segment 4 (HA)	2874.5	0.000000e+00	1613/1642 (98%)