Central Research Institute of Epidemiology has released partial Zika sequence from urine collected Mar 22, 2016, Dominican_Rep-Rus-2-2016.

LOCUS       KU978616                 489 bp    RNA     linear   VRL 09-APR-2016
DEFINITION  Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene,
            partial cds.
ACCESSION   KU978616
VERSION     KU978616.1  GI:1013874324
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Karan,L.S., Fedorova,M.V., Grigorieva,Y.E., Zhurenkova,O.B.,
            Koval,M.V., Voldokhina,A.V. and Shipulin,G.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-MAR-2016) Central Research Institute of Epidemiology,
            Novogireevskaya Str., 3A, Moscow 111123, Russia
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Dominican_Rep-Rus-2-2016"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Russia"
                     /collection_date="22-Mar-2016"
                     /note="genotype: Asian"
     CDS             <1..>489
                     /note="NS2a-NS2b"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="AMU04544.1"
                     /db_xref="GI:1013874325"
                     /translation="LLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMVVPRTDN
                     ITLAILAALTPLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVR
                     LVDPINVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLI
                     VSY"
ORIGIN      
        1 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg
       61 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca
      121 cgcactgata acatcacctt ggcaatcctg gctgctctga caccactggc ccggggcaca
      181 ctgcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctctg
      241 aagggaaaag gcagtgtgaa gaagaactta ccatttgtca tggccctggg actaaccgct
      301 gtaaggctgg tcgaccccat caacgtggtg ggactgctgt tgctcacaag gagtgggaag
      361 cggagctggc cccctagcga agtactcaca gctgttggcc tgatatgcgc attggctgga
      421 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt
      481 gtcagttac

http://www.ncbi.nlm.nih.gov/nuccore/KU978616.1

 

 

 

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU978616.1|	Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds	883	883	100%	0.0	100%	KU978616.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU963796.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU955589.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	877	877	100%	0.0	99%	KU926310.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU866423.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	877	877	100%	0.0	99%	KU820899.2
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	877	877	100%	0.0	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	877	877	100%	0.0	99%	KU527068.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	877	877	100%	0.0	99%	KU501215.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU365777.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU312312.1
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	877	877	100%	0.0	99%	KJ776791.1
Select seq gb|KU509998.2|	Zika virus strain Haiti/1225/2014, complete genome	874	874	100%	0.0	99%	KU509998.2
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	874	874	100%	0.0	99%	KU991811.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	874	874	100%	0.0	99%	KU940228.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	874	874	100%	0.0	99%	KU926309.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	874	874	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	874	874	100%	0.0	99%	KU853012.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	874	874	100%	0.0	99%	KU729217.2
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	874	874	100%	0.0	99%	KU744693.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	874	874	100%	0.0	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	874	874	100%	0.0	99%	KU501216.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	874	874	100%	0.0	99%	KU365778.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	874	874	100%	0.0	99%	KU321639.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	868	868	100%	0.0	99%	KU940224.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	868	868	100%	0.0	99%	KU870645.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	868	868	100%	0.0	99%	KU820898.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	868	868	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	868	868	100%	0.0	99%	KU761564.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	868	868	100%	0.0	99%	KU497555.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	865	865	100%	0.0	99%	KU955590.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	865	865	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	865	865	100%	0.0	99%	KU922923.1
Select seq gb|KU820897.1|	Zika virus isolate FLR polyprotein gene, complete cds	865	865	100%	0.0	99%	KU820897.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	865	865	100%	0.0	99%	KU647676.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	859	859	100%	0.0	99%	KU681081.3
Select seq gb|KU740199.1|	Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds	857	857	99%	0.0	99%	KU740199.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	841	841	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	841	841	100%	0.0	98%	JN860885.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	838	838	100%	0.0	98%	KU681082.3
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	838	838	100%	0.0	98%	KF993678.1
Select seq gb|KU872850.1|	Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds	814	814	93%	0.0	99%	KU872850.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	803	803	100%	0.0	96%	KU940227.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	792	792	100%	0.0	96%	EU545988.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	765	765	100%	0.0	95%	HQ234499.1