niman Posted May 8, 2016 Report Posted May 8, 2016 (edited) JCVI has generated a full Puerto Rico Zika sequence from December 2015 collection, PRI/PRVABC59/2015 Edited May 8, 2016 by niman
niman Posted May 8, 2016 Author Report Posted May 8, 2016 LOCUS KX087101 10764 bp ss-RNA linear VRL 19-APR-2016 DEFINITION Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome. ACCESSION KX087101 VERSION KX087101.1 GI:1020267435 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10764) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Stockwell,T., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (18-APR-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 258.0x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10764 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Homo sapiens/PRI/PRVABC59/2015" /isolate="V3/V2" /host="Homo sapiens" /db_xref="BEI:NR-50240" /db_xref="taxon:64320" /lab_host="Cercopithecus aethiops kidney epithelial cells" /country="Puerto Rico" /collection_date="Dec-2015" /note="passage details: V3/V2 (CDC/BEI); V# = number of passages in Vero cells" misc_feature 1..10764 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00005.MAIN" gene 73..10344 /gene="GP1" /locus_tag="A2G93_63481gpGP1" CDS 73..10344 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /codon_start=1 /product="genome polyprotein" /protein_id="AMZ03556.1" /db_xref="GI:1020267436" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMETIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVELQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYVATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 73..384 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 439..717 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="protein pr" mat_peptide 718..942 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 943..2454 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="envelope protein E" mat_peptide 2455..3510 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS1" mat_peptide 3511..4188 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS2A" mat_peptide 4189..4578 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS2B" mat_peptide 4579..6429 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS3" mat_peptide 6430..6810 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS4A" mat_peptide 6811..6879 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="protein 2K" mat_peptide 6880..7632 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS4B" mat_peptide 7633..10341 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 cgagtttgaa gcgaaagcta gcaacagtat caacaggttt tattttggat ttggaaacga 61 gagtttctgg tcatgaaaaa cccaaaaaag aaatccggag gattccggat tgtcaatatg 121 ctaaaacgcg gagtagcccg tgtgagcccc tttgggggct tgaagaggct gccagccgga 181 cttctgctgg gtcatgggcc catcaggatg gtcttggcga ttctagcctt tttgagattc 241 acggcaatca agccatcact gggtctcatc aatagatggg gttcagtggg gaaaaaagag 301 gctatggaaa caataaagaa gttcaagaaa gatctggctg ccatgctgag aataatcaat 361 gctaggaagg agaagaagag acgaggcgca gatactagtg tcggaattgt tggcctcctg 421 ctgaccacag ctatggcagc ggaggtcact agacgtggga gtgcatacta tatgtacttg 481 gacagaaacg atgctgggga ggccatatct tttccaacca cattggggat gaataagtgt 541 tatatacaga tcatggatct tggacacatg tgtgatgcca ccatgagcta tgaatgccct 601 atgctggatg agggggtgga accagatgac gtcgattgtt ggtgcaacac gacgtcaact 661 tgggttgtgt acggaacctg ccatcacaaa aaaggtgaag cacggagatc tagaagagct 721 gtgacgctcc cctcccattc caccaggaag ctgcaaacgc ggtcgcaaac ctggttggaa 781 tcaagagaat acacaaagca cttgattaga gtcgaaaatt ggatattcag gaaccctggc 841 ttcgcgttag cagcagctgc catcgcttgg cttttgggaa gctcaacgag ccaaaaagtc 901 atatacttgg tcatgatact gctgattgcc ccggcataca gcatcaggtg cataggagtc 961 agcaataggg actttgtgga aggtatgtca ggtgggactt gggttgatgt tgtcttggaa 1021 catggaggtt gtgtcaccgt aatggcacag gacaaaccga ctgtcgacat agagctggtt 1081 acaacaacag tcagcaacat ggcggaggta agatcctact gctatgaggc atcaatatca 1141 gacatggctt ctgacagccg ctgcccaaca caaggtgaag cctaccttga caagcaatca 1201 gacactcaat atgtctgcaa aagaacgtta gtggacagag gctggggaaa tggatgtgga 1261 ctttttggca aagggagcct ggtgacatgc gctaagtttg catgctccaa gaaaatgacc 1321 gggaagagca tccagccaga gaatctggag taccggataa tgctgtcagt tcatggctcc 1381 cagcacagtg ggatgatcgt taatgacaca ggacatgaaa ctgatgagaa tagagcgaaa 1441 gttgagataa cgcccaattc accgagagcc gaagccaccc tggggggttt tggaagccta 1501 ggacttgatt gtgaaccgag gacaggcctt gacttttcag atttgtatta cttgactatg 1561 aataacaagc actggttggt tcacaaggag tggttccacg acattccatt accttggcac 1621 gctggggcag acaccggaac tccacactgg aacaacaaag aagcactggt agagttcaag 1681 gacgcacatg ccaaaaggca aactgtcgtg gttctaggga gtcaagaagg agcagttcac 1741 acggcccttg ctggagctct ggaggctgag atggatggtg caaagggaag gctgtcctct 1801 ggccacttga aatgtcgcct gaaaatggat aaacttagat tgaagggcgt gtcatactcc 1861 ttgtgtactg cagcgttcac attcaccaag atcccggctg aaacactgca cgggacagtc 1921 acagtggagt tacagtacgc agggacagat ggaccttgca aggttccagc tcagatggcg 1981 gtggacatgc aaactctgac cccagttggg aggttgataa ccgctaaccc cgtaatcact 2041 gaaagcactg agaactctaa gatgatgctg gaacttgatc caccatttgg ggactcttac 2101 attgtcatag gagtcgggga gaagaagatc acccaccact ggcacaggag tggcagcacc 2161 attggaaaag catttgaagc cactgtgaga ggtgccaaga gaatggcagt cttgggagac 2221 acagcctggg actttggatc agttggaggc gctctcaact cattgggcaa gggcatccat 2281 caaatttttg gagcagcttt caaatcattg tttggaggaa tgtcctggtt ctcacaaatt 2341 ctcattggaa cgttgctgat gtggttgggt ctgaacacaa agaatggatc tatttccctt 2401 atgtgcttgg ccttaggggg agtgttgatc ttcttatcca cagccgtctc tgctgatgtg 2461 gggtgctcgg tggacttctc aaagaaggag acgagatgcg gtacaggggt gttcgtctat 2521 aacgacgttg aagcctggag ggacaggtac aagtaccatc ctgactcccc ccgtagattg 2581 gcagcagcag tcaagcaagc ctgggaagat ggtatctgcg ggatctcctc tgtttcaaga 2641 atggaaaaca tcatgtggag atcagtagaa ggggagctca acgcaatcct ggaagagaat 2701 ggagttcaac tgacggtcgt tgtgggatct gtaaaaaacc ccatgtggag aggtccacag 2761 agattgcccg tgcctgtgaa cgagctgccc cacggctgga aggcttgggg gaaatcgtat 2821 ttcgtcagag cagcaaagac aaataacagc tttgtcgtgg atggtgacac actgaaggaa 2881 tgcccactca aacatagagc atggaacagc tttcttgtgg aggatcatgg gttcggggta 2941 tttcacacta gtgtctggct caaggttaga gaagattatt cattagagtg tgatccagcc 3001 gttattggaa cagctgttaa gggaaaggag gctgtacaca gtgatctagg ctactggatt 3061 gagagtgaga agaatgacac atggaggctg aagagggccc atctgatcga gatgaaaaca 3121 tgtgaatggc caaagtccca cacattgtgg acagatggaa tagaagagag tgatctgatc 3181 atacccaagt ctttagctgg gccactcagc catcacaata ccagagaggg ctacaggacc 3241 caaatgaaag ggccatggca cagtgaagag cttgaaattc ggtttgagga atgcccaggc 3301 actaaggtcc acgtggagga aacatgtgga acaagaggac catctctgag atcaaccact 3361 gcaagcggaa gggtgatcga ggaatggtgc tgcagggagt gcacaatgcc cccactgtcg 3421 ttccgggcta aagatggctg ttggtatgga atggagataa ggcccaggaa agaaccagaa 3481 agcaacttag taaggtcaat ggtgactgca ggatcaactg atcacatgga ccacttctcc 3541 cttggagtgc ttgtgatcct gctcatggtg caggaagggc tgaagaagag aatgaccaca 3601 aagatcatca taagcacatc aatggcagtg ctggtagcta tgatcctggg aggattttca 3661 atgagtgacc tggctaagct tgcaattttg atgggtgcca ccttcgcgga aatgaacact 3721 ggaggagatg tagctcatct ggcgctgata gcggcattca aagtcagacc agcgttgctg 3781 gtatctttca tcttcagagc taattggaca ccccgtgaaa gcatgctgct ggccttggcc 3841 tcgtgtcttt tgcaaactgc gatctccgcc ttggaaggcg acctgatggt tctcatcaat 3901 ggttttgctt tggcctggtt ggcaatacga gcgatggttg ttccacgcac tgataacatc 3961 accttggcaa tcctggctgc tctgacacca ctggcccggg gcacactgct tgtggcgtgg 4021 agagcaggcc ttgctacttg cggggggttt atgctcctct ctctgaaggg aaaaggcagt 4081 gtgaagaaga acttaccatt tgtcatggcc ctgggactaa ccgctgtgag gctggtcgac 4141 cccatcaacg tggtgggact gctgttgctc acaaggagtg ggaagcggag ctggccccct 4201 agcgaagtac tcacagctgt tggcctgata tgcgcattgg ctggagggtt cgccaaggca 4261 gatatagaga tggctgggcc catggccgcg gtcggtctgc taattgtcag ttacgtggtc 4321 tcaggaaaga gtgtggacat gtacattgaa agagcaggtg acatcacatg ggaaaaagat 4381 gcggaagtca ctggaaacag tccccggctc gatgtggcgc tagatgagag tggtgatttc 4441 tccctggtgg aggatgacgg tccccccatg agagagatca tactcaaggt ggtcctgatg 4501 accatctgtg gcatgaaccc aatagccata ccctttgcag ctggagcgtg gtacgtatac 4561 gtgaagactg gaaaaaggag tggtgctcta tgggatgtgc ctgctcccaa ggaagtaaaa 4621 aagggggaga ccacagatgg agtgtacaga gtaatgactc gtagactgct aggttcaaca 4681 caagttggag tgggagttat gcaagagggg gtctttcaca ctatgtggca cgtcacaaaa 4741 ggatccgcgc tgagaagcgg tgaagggaga cttgatccat actggggaga tgtcaagcag 4801 gatctggtgt catactgtgg tccatggaag ctagatgccg cctgggatgg gcacagcgag 4861 gtgcagctct tggccgtgcc ccccggagag agagcgagga acatccagac tctgcccgga 4921 atatttaaga caaaggatgg ggacattgga gcggttgcgc tggattaccc agcaggaact 4981 tcaggatctc caatcctaga caagtgtggg agagtgatag gactttatgg caatggggtc 5041 gtgatcaaaa acgggagtta tgttagtgcc atcacccaag ggaggaggga ggaagagact 5101 cctgttgagt gcttcgagcc ctcgatgctg aagaagaagc agctaactgt cttagacttg 5161 catcctggag ctgggaaaac caggagagtt cttcctgaaa tagtccgtga agccataaaa 5221 acaagactcc gtactgtgat cttagctcca accagggttg tcgctgctga aatggaggag 5281 gcccttagag ggcttccagt gcgttatatg acaacagcag tcaatgtcac ccactctgga 5341 acagaaatcg tcgacttaat gtgccatgcc accttcactt cacgtctact acagccaatc 5401 agagtcccca actataatct gtatattatg gatgaggccc acttcacaga tccctcaagt 5461 atagcagcaa gaggatacat ttcaacaagg gttgagatgg gcgaggcggc tgccatcttc 5521 atgaccgcca cgccaccagg aacccgtgac gcatttccgg actccaactc accaattatg 5581 gacaccgaag tggaagtccc agagagagcc tggagctcag gctttgattg ggtgacggat 5641 cattctggaa aaacagtttg gtttgttcca agcgtgagga acggcaatga gatcgcagct 5701 tgtctgacaa aggctggaaa acgggtcata cagctcagca gaaagacttt tgagacagag 5761 ttccagaaaa caaaacatca agagtgggac tttgtcgtga caactgacat ttcagagatg 5821 ggcgccaact ttaaagctga ccgtgtcata gattccagga gatgcctaaa gccggtcata 5881 cttgatggcg agagagtcat tctggctgga cccatgcctg tcacacatgc cagcgctgcc 5941 cagaggaggg ggcgcatagg caggaatccc aacaaacctg gagatgagta tctgtatgga 6001 ggtgggtgcg cagagactga cgaagaccat gcacactggc ttgaagcaag aatgctcctt 6061 gacaatattt acctccaaga tggcctcata gcctcgctct atcgacctga ggccgacaaa 6121 gtagcagcca ttgagggaga gttcaagctt aggacggagc aaaggaagac ctttgtggaa 6181 ctcatgaaaa gaggagatct tcctgtttgg ctggcctatc aggttgcatc tgccggaata 6241 acctacacag atagaagatg gtgctttgat ggcacgacca acaacaccat aatggaagac 6301 agtgtgccgg cagaggtgtg gaccagacac ggagagaaaa gagtgctcaa accgaggtgg 6361 atggacgcca gagtttgttc agatcatgcg gccctgaagt cattcaagga gtttgccgct 6421 gggaaaagag gagcggcttt tggagtgatg gaagccctgg gaacactgcc aggacacatg 6481 acagagagat tccaggaagc cattgacaac ctcgctgtgc tcatgcgggc agagactgga 6541 agcaggcctt acaaagccgc ggcggcccaa ttgccggaga ccctagagac cataatgctt 6601 ttggggttgc tgggaacagt ctcgctggga atcttcttcg tcttgatgag gaacaagggc 6661 atagggaaga tgggctttgg aatggtgact cttggggcca gcgcatggct catgtggctc 6721 tcggaaattg agccagccag aattgcatgt gtcctcattg ttgtgttcct attgctggtg 6781 gtgctcatac ctgagccaga aaagcaaaga tctccccagg acaaccaaat ggcaatcatc 6841 atcatggtag cagtaggtct tctgggcttg attaccgcca atgaactcgg atggttggag 6901 agaacaaaga gtgacctaag ccatctaatg ggaaggagag aggagggggc aaccatagga 6961 ttctcaatgg acattgacct gcggccagcc tcagcttggg ccatctatgc tgccttgaca 7021 actttcatta ccccagccgt ccaacatgca gtgaccacct catacaacaa ctactcctta 7081 atggcgatgg ccacgcaagc tggagtgttg tttggcatgg gcaaagggat gccattctac 7141 gcatgggact ttggagtccc gctgctaatg ataggttgct actcacaatt aacacccctg 7201 accctaatag tggccatcat tttgctcgtg gcgcactaca tgtacttgat cccagggctg 7261 caggcagcag ctgcgcgtgc tgcccagaag agaacggcag ctggcatcat gaagaaccct 7321 gttgtggatg gaatagtggt gactgacatt gacacaatga caattgaccc ccaagtggag 7381 aaaaagatgg gacaggtgct actcatagca gtagccgtct ccagcgccat actgtcgcgg 7441 accgcctggg ggtgggggga ggctggggct ctgatcacag ccgcaacttc cactttgtgg 7501 gaaggctctc cgaacaagta ctggaactcc tctacagcca cttcactgtg taacattttt 7561 aggggaagtt acttggctgg agcttctcta atctacacag taacaagaaa cgctggcttg 7621 gtcaagagac gtgggggtgg aacaggagag accctgggag agaaatggaa ggcccgcttg 7681 aaccagatgt cggccctgga gttctactcc tacaaaaagt caggcatcac cgaggtgtgc 7741 agagaagagg cccgccgcgc cctcaaggac ggtgtggcaa cgggaggcca tgctgtgtcc 7801 cgaggaagtg caaagctgag atggttggtg gagcggggat acctgcagcc ctatggaaag 7861 gtcattgatc ttggatgtgg cagagggggc tggagttact acgtcgccac catccgcaaa 7921 gttcaagaag tgaaaggata cacaaaagga ggccctggtc atgaagaacc cgtgttggtg 7981 caaagctatg ggtggaacat agtccgtctt aagagtgggg tggacgtctt tcatatggcg 8041 gctgagccgt gtgacacgtt gctgtgtgac ataggtgagt catcatctag tcctgaagtg 8101 gaagaagcac ggacgctcag agtcctctcc atggtggggg attggcttga aaaaagacca 8161 ggagcctttt gtataaaagt gttgtgccca tacaccagca ctatgatgga aaccctggag 8221 cgactgcagc gtaggtatgg gggaggactg gtcagagtgc cactctcccg caactctaca 8281 catgagatgt actgggtctc tggagcgaaa agcaacacca taaaaagtgt gtccaccacg 8341 agccagctcc tcttggggcg catggacggg cctaggaggc cagtgaaata tgaggaggat 8401 gtgaatctcg gctctggcac gcgggctgtg gtaagctgcg ctgaagctcc caacatgaag 8461 atcattggta accgcattga aaggatccgc agtgagcacg cggaaacgtg gttctttgac 8521 gagaaccacc catataggac atgggcttac catggaagct atgaggcccc cacacaaggg 8581 tcagcgtcct ctctaataaa cggggttgtc aggctcctgt caaaaccctg ggatgtggtg 8641 actggagtca caggaatagc catgaccgac accacaccgt atggtcagca aagagttttc 8701 aaggaaaaag tggacactag ggtgccagac ccccaagaag gcactcgtca ggttatgagc 8761 atggtctctt cctggttgtg gaaagagcta ggcaaacaca aacggccacg agtctgcacc 8821 aaagaagagt tcatcaacaa ggttcgtagc aatgcagcat taggggcaat atttgaagag 8881 gaaaaagagt ggaagactgc agtggaagct gtgaacgatc caaggttctg ggctctagtg 8941 gacaaggaaa gagagcacca cctgagagga gagtgccaga gctgtgtgta caacatgatg 9001 ggaaaaagag aaaagaaaca aggggaattt ggaaaggcca agggcagccg cgccatctgg 9061 tatatgtggc taggggctag atttctagag ttcgaagccc ttggattctt gaacgaggat 9121 cactggatgg ggagagagaa ctcaggaggt ggtgttgaag ggctgggatt acaaagactc 9181 ggatatgtcc tagaagagat gagtcgtata ccaggaggaa ggatgtatgc agatgacact 9241 gctggctggg acacccgcat tagcaggttt gatctggaga atgaagctct aatcaccaac 9301 caaatggaga aagggcacag ggccttggca ttggccataa tcaagtacac ataccaaaac 9361 aaagtggtaa aggtccttag accagctgaa aaagggaaaa cagttatgga cattatttcg 9421 agacaagacc aaagggggag cggacaagtt gtcacttacg ctcttaacac atttaccaac 9481 ctagtggtgc aactcattcg gaatatggag gctgaggaag ttctagagat gcaagacttg 9541 tggctgctgc ggaggtcaga gaaagtgacc aactggttgc agagcaacgg atgggatagg 9601 ctcaaacgaa tggcagtcag tggagatgat tgcgttgtga agccaattga tgataggttt 9661 gcacatgccc tcaggttctt gaatgatatg ggaaaagtta ggaaggacac acaagagtgg 9721 aaaccctcaa ctggatggga caactgggaa gaagttccgt tttgctccca ccacttcaac 9781 aagctccatc tcaaggacgg gaggtccatt gtggttccct gccgccacca agatgaactg 9841 attggccggg cccgcgtctc tccaggggcg ggatggagca tccgggagac tgcttgccta 9901 gcaaaatcat atgcgcaaat gtggcagctc ctttatttcc acagaaggga cctccgactg 9961 atggccaatg ccatttgttc atctgtgcca gttgactggg ttccaactgg gagaactacc 10021 tggtcaatcc atggaaaggg agaatggatg accactgaag acatgcttgt ggtgtggaac 10081 agagtgtgga ttgaggagaa cgaccacatg gaagacaaga ccccagttac gaaatggaca 10141 gacattccct atttgggaaa aagggaagac ttgtggtgtg gatctctcat agggcacaga 10201 ccgcgcacca cctgggctga gaacattaaa aacacagtca acatggtgcg caggatcata 10261 ggtgatgaag aaaagtacat ggactaccta tccacccaag ttcgctactt gggtgaagaa 10321 gggtctacac ctggagtgct gtaagcacca atcttaatgt tgtcaggcct gctagtcagc 10381 cacagcttgg ggaaagctgt gcagcctgtg acccccccag gagaagctgg gaaaccaagc 10441 ctatagtcag gccgagaacg ccatggcacg gaagaagcca tgctgcctgt gagcccctca 10501 gaggacactg agtcaaaaaa ccccacgcgc ttggaggcgc aggatgggaa aagaaggtgg 10561 cgaccttccc cacccttcaa tctggggcct gaactggaga tcagctgtgg atctccagaa 10621 gagggactag tggttagagg agaccccccg gaaaacgcaa aacagcatat tgacgctggg 10681 aaagaccaga gactccatga gtttccacca cgctggccgc caggcacaga tcgccgaata 10741 gcggcggccg gtgtggggaa atcc
niman Posted May 8, 2016 Author Report Posted May 8, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX087101.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1852518525100%0.0100%KX087101.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1852018520100%0.099%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1842018420100%0.099%KU365778.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1841118411100%0.099%KU937936.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1840818408100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1840818408100%0.099%KU365779.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1839318393100%0.099%KU365780.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1839318393100%0.099%KU312312.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1839018390100%0.099%KU365777.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1837518375100%0.099%KU509998.3Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1837518375100%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1837218372100%0.099%KX056898.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1837218372100%0.099%KJ776791.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1836618366100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1836618366100%0.099%KU761564.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1836318363100%0.099%KU991811.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1836318363100%0.099%KU955590.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1836318363100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1835718357100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1835418354100%0.099%KU729218.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1834818348100%0.099%KX198135.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1834818348100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1834818348100%0.099%KU926309.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1834518345100%0.099%KU940228.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1833918339100%0.099%KX156776.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1833918339100%0.099%KU501217.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1833618336100%0.099%KX156774.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1833618336100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833618336100%0.099%KU501216.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1833018330100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1833018330100%0.099%KX087102.1Select seq gb|KU820897.1|Zika virus isolate FLR polyprotein gene, complete cds1833018330100%0.099%KU820897.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1832718327100%0.099%KU729217.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183271832799%0.099%KU497555.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1832718327100%0.099%KU527068.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1831818318100%0.099%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1831818318100%0.099%KU922960.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1831218312100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1831218312100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1830318303100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1830318303100%0.099%KU853012.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1828218282100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1827318273100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1827318273100%0.099%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1826718267100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1826718267100%0.099%KU820899.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182491824999%0.099%KU940224.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds1816418164100%0.099%KU866423.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1813718137100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1803818038100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1773517735100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177351773599%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176851768598%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758017580100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1742917429100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164201642099%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1333113331100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133261332699%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1331513315100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1331113311100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1331113311100%0.089%KF268948.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1330813308100%0.089%LC002520.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1330413304100%0.089%KF383119.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1330413304100%0.089%KF268950.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1329913299100%0.089%KU955595.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1329213292100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1329213292100%0.089%KU955594.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1329013290100%0.089%KU955592.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1327713765100%0.089%KX198134.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1327213272100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1325713257100%0.089%KF383116.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1325713257100%0.089%DQ859059.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1325013250100%0.089%AY632535.2Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132321323299%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1319613196100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1316713275100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131651316599%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1299013058100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129001290097%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108771087797%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50471442787%0.095%KU940227.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4980498027%0.099%KU312314.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4953495327%0.099%KU312313.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4641464125%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4632463225%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42171327775%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3443344318%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3214321417%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31101308374%0.099%KX101066.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2861418495%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2682268214%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22681077465%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2048204811%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2021202111%0.099%KU179098.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18401387178%0.099%KX101061.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds183318339%0.099%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds183318339%0.099%KX059013.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds174617469%0.099%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds174517459%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds174317439%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds173917399%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds173917399%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds173917399%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds173717379%0.099%KM078929.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds165816589%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds165816589%0.099%KX173840.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds159715978%0.099%KJ873160.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds151715178%0.099%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds150715078%0.099%KX173844.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds141514157%0.099%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds138213827%0.099%KM851039.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds134813487%0.099%KU985087.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds134613467%0.098%KM851038.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134213427%0.099%KU556802.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1315131510%0.088%AF013415.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds123612366%0.099%KT200609.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds123412346%0.099%KU232300.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds122512256%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122312236%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds121612166%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121312136%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds120912096%0.099%KU232298.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds120712076%0.099%KU232293.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds120512056%0.099%KU232296.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120212026%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232289.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome1186741642%0.099%KX101063.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118411846%0.099%KU232299.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome1180776446%0.099%KX101065.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118011806%0.099%KU232291.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113311336%0.099%KU758878.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds106810688%0.088%KF270886.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome1045733641%0.097%KX101062.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101810185%0.0100%KU867812.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds100210028%0.086%AF372422.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds9969967%0.089%KF270887.1Select seq gb|EF158064.1|St. Louis encephalitis virus strain GML 902612 polyprotein gene, partial cds984198364%0.070%EF158064.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9719717%0.089%KF383022.1Select seq gb|EU303241.1|Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds9679677%0.088%EU303241.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds9669667%0.088%KF383026.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds9609607%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds9579577%0.088%KF383036.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds9579577%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds9539537%0.088%KF383034.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds9489487%0.088%KF383033.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds9449447%0.088%KF383029.1Select seq gb|JX041632.1|West Nile virus strain Ig2266, complete genome935179858%0.069%JX041632.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds9309307%0.087%KF383039.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds9309307%0.087%KF383038.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds9269267%0.087%KF383031.1Select seq gb|GQ851605.1|West Nile virus strain G16146 polyprotein gene, complete cds926185254%0.069%GQ851605.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds9219217%0.087%KF383046.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds9219217%0.087%KF383028.1Select seq gb|EU566860.1|St. Louis encephalitis virus strain Hubbard, complete genome921200957%0.069%EU566860.1Select seq gb|KT823415.1|St. Louis encephalitis virus strain RT 121B polyprotein gene, complete cds917200060%0.069%KT823415.1Select seq gb|FJ753286.2|St. Louis encephalitis virus strain CbaAr-4005, complete genome917191465%0.069%FJ753286.2Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds9069066%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds9069066%0.088%KF383086.1Select seq gb|DQ256376.1|West Nile virus strain 804994, complete genome899179659%0.068%DQ256376.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds8978977%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds8938937%0.086%KF383043.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds8888887%0.086%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds8848847%0.086%KF383042.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds8838837%0.086%KF383035.1Select seq gb|EF158069.1|St. Louis encephalitis virus strain 72 V 4749 polyprotein gene, partial cds881194867%0.069%EF158069.1Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds8778774%0.099%KU978616.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds8748746%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds8748746%0.087%KF383085.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds8708706%0.087%KF383106.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome866848351%0.090%KX101067.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds8658656%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds8658656%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds8658656%0.087%KF383088.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds8618616%0.087%KF383087.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds8578577%0.085%KF383040.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds8478476%0.087%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds8438436%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds8438436%0.086%KF383097.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds8388386%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds8348346%0.086%KF383098.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID8348344%0.099%AB908162.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds8208204%0.099%KU872850.1Select seq gb|KM659877.1|Usutu virus strain Bonn, complete genome814170159%0.068%KM659877.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds8078076%0.085%KF383084.1Select seq gb|KC754954.1|Usutu virus isolate ArD19848, complete genome803155760%0.068%KC754954.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds8018016%0.085%KF383113.1Select seq gb|HM147824.1|West Nile virus from Democratic Republic of the Congo, complete genome783172853%0.068%HM147824.1Select seq gb|KC754958.1|Usutu virus isolate ArB1803, complete genome778178460%0.068%KC754958.1Select seq gb|EF429199.1|West Nile virus SA381/00, complete genome765163357%0.068%EF429199.1Select seq gb|KM203863.1|West Nile virus strain Cz 13-502, complete genome738166655%0.068%KM203863.1Select seq gb|KM203860.1|West Nile virus strain Cz 13-104, complete genome724164655%0.067%KM203860.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds7177177%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds7137137%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds7137137%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds7087087%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds7067067%0.081%KF383021.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds6936933%0.098%KF258813.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds6906907%0.080%KF383019.1Select seq gb|JF262780.1|Dengue virus 4 isolate P73-1120, complete genome677175550%0.069%JF262780.1Select seq gb|JF262779.1|Dengue virus 4 isolate P75-514, complete genome677175550%0.069%JF262779.1Select seq gb|EF457906.1|Dengue virus type 4 isolate P75-215, complete genome675173950%0.069%EF457906.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds6646646%0.081%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds6636636%0.081%KF383093.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds6576576%0.081%KF383095.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds6546546%0.080%KF383091.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds6416413%9e-17999%KU985088.1Select seq gb|JQ686088.2|Dengue virus 2 strain JHA1, partial genome641150660%9e-17969%JQ686088.2Select seq gb|FJ410201.1|Dengue virus 1 isolate DENV-1/VN/BID-V1806/2007, complete genome636158644%4e-17769%FJ410201.1Select seq emb|HG316482.1|Dengue virus type 1 complete genome, isolate KDH0030A630158151%2e-17569%HG316482.1Select seq gb|JN697058.1|Dengue virus 1 isolate DH/S1/05/152, complete genome630160446%2e-17569%JN697058.1Select seq gb|FJ882536.1|Dengue virus 1 isolate DENV-1/VN/BID-V2711/2006, complete genome630158144%2e-17569%FJ882536.1Select seq gb|FJ906728.1|Dengue virus 1 isolate DENV-1/VN/BID-V1852/2007, complete genome627155944%2e-17469%FJ906728.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds6216213%9e-17399%KX062045.1Select seq gb|JQ048541.1|Dengue virus 1 isolate DG14, complete genome621159547%9e-17369%JQ048541.1Select seq gb|GU131725.1|Dengue virus 1 isolate DENV-1/VN/BID-V3903/2008, complete genome621156644%9e-17369%GU131725.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds6166163%4e-17199%KX062044.1Select seq emb|FM210240.2|Dengue virus 2 isolate MD1273, complete genome616140959%4e-17169%FM210240.2Select seq gb|DQ181799.1|Dengue virus type 2 strain ThD2_0017_98, complete genome614163848%1e-17069%DQ181799.1Select seq gb|AF100462.1|AF100462Dengue virus type 2 strain C0390 polyprotein gene, complete cds609166749%6e-16969%AF100462.1Select seq gb|GU131894.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3786/2008, complete genome603145442%2e-16769%GU131894.1Select seq gb|GQ868633.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3793/2008, complete genome603145742%2e-16769%GQ868633.1Select seq gb|FJ639711.1|Dengue virus 2 isolate DENV-2/KH/BID-V2045/2005, complete genome601139858%8e-16769%FJ639711.1Select seq gb|FJ639710.1|Dengue virus 2 isolate DENV-2/KH/BID-V2044/2005, complete genome601139858%8e-16769%FJ639710.1Select seq gb|KJ918750.1|Dengue virus 2 isolate P23085 INDI-60, complete genome598175448%1e-16569%KJ918750.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds5855853%6e-16299%KX173842.1Select seq gb|GU131887.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome585154142%6e-16268%GU131887.1Select seq gb|EU529701.1|Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome581167946%8e-16168%EU529701.1Select seq gb|JN819408.1|Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome580159947%3e-16068%JN819408.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds5785783%9e-16099%KR815989.1Select seq gb|EU482580.1|Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome572165946%4e-15868%EU482580.1Select seq gb|FJ850050.1|Dengue virus 2 isolate DENV-2/NI/BID-V2356/2007, complete genome571162050%1e-15768%FJ850050.1Select seq gb|EU569702.1|Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome571163451%1e-15768%EU569702.1Select seq gb|JN819407.1|Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome565155747%6e-15668%JN819407.1Select seq gb|EU596483.1|Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome565164351%6e-15668%EU596483.1Select seq gb|FJ898466.1|Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome562157749%7e-15568%FJ898466.1Select seq gb|JQ922552.1|Dengue virus 2 isolate DENV-2/IND/P23085/1960, complete genome540155344%2e-14868%JQ922552.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds5365362%3e-14799%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds5355352%1e-14699%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds5315312%1e-14598%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds5295292%4e-14599%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds5265262%5e-14499%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds5265262%5e-14499%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds5265262%5e-14499%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds5025022%6e-13799%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds4994992%7e-13699%KJ680134.1Select seq gb|KU954085.1|Zika virus isolate ZIKCOLSC67 polyprotein gene, partial cds4254252%1e-11399%KU954085.1
niman Posted May 8, 2016 Author Report Posted May 8, 2016 Map Updatehttps://www.google.com/maps/d/u/1/edit?mid=1XSxKe6FIecV8f33cQwyc7uylxeU&hl=en
Recommended Posts
Please sign in to comment
You will be able to leave a comment after signing in
Sign In Now