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2016 Brazil Zika Sequences From Transfusion Cases


niman

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LOCUS       KX173842                 329 bp    RNA     linear   VRL 06-MAY-2016
DEFINITION  Zika virus isolate 16Z08 envelope protein gene, partial cds.
ACCESSION   KX173842
VERSION     KX173842.1  GI:1026288131
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 329)
  AUTHORS   Motta,I.J.F., Spencer,B.R., Silva,S.G.C., Arruda,M.B., Dobbin,J.A.,
            Gonzaga,Y.B.M., Arcuri,I.P., Tavares,R.C.B.S., Atta,E.H.,
            Fernandes,R.F.M., Costa,D.A., Ribeiro,L.J., Limonte,F., Higa,L.M.,
            Voloch,C.M., Brindeiro,R.M., Tanuri,A. and Ferreira,O.C. Jr.
  TITLE     Transmission of Zika Virus by Platelet Transfusion
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 329)
  AUTHORS   Motta,I.J.F., Spencer,B.R., Silva,S.G.C., Arruda,M.B., Dobbin,J.A.,
            Gonzaga,Y.B.M., Arcuri,I.P., Tavares,R.C.B.S., Atta,E.H.,
            Fernandes,R.F.M., Costa,D.A., Ribeiro,L.J., Limonte,F., Higa,L.M.,
            Voloch,C.M., Brindeiro,R.M., Tanuri,A. and Ferreira,O.C. Jr.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2016) Genetics Dept. and Clementino Fraga Filho
            University Hospital, Federal University of Rio de Janeiro, Rio de
            Janeiro, RJ 21942-901, Brazil
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: DNAstar v. 7.0.0; BioEdit v. 7.2.5
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="16Z08"
                     /isolation_source="plasma"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Brazil"
                     /collection_date="11-Feb-2016"
     CDS             <1..>329
                     /codon_start=1
                     /product="envelope protein"
                     /protein_id="ANC90422.1"
                     /db_xref="GI:1026288132"
                     /translation="LVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVT
                     VMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQY
                     VCKRTLV"
ORIGIN      
        1 ttggtcatga tactgctgat tgccccggca tatagcatca ggtgcatagg agtcagcaat
       61 agggactttg tggaaggtat gtcaggtggg acttgggttg atgttgtctt ggaacatgga
      121 ggttgtgtca ccgtaatggc acaggacaaa ccgactgtcg acatagagct ggttacaaca
      181 acagtcagca acatggcgga ggtaagatcc tactgctatg aggcatcaat atcagacatg
      241 gcttcggaca gccgctgccc aacacaaggt gaagcctacc ttgacaagca atcagacact
      301 caatatgtct gcaaaagaac gttagtgga
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Sequences producing significant alignments:

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Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
594594100%3e-166100%KX173842.1
594594100%3e-166100%KX173841.1
594594100%3e-166100%KX173840.1
589589100%1e-16499%KX198135.1
589589100%1e-16499%KU937936.1
589589100%1e-16499%KX101060.1
589589100%1e-16499%KX051563.1
589589100%1e-16499%KU509998.3
589589100%1e-16499%KU940228.1
589589100%1e-16499%KU940224.1
589589100%1e-16499%KU870645.1
589589100%1e-16499%KU922960.1
589589100%1e-16499%KU820898.1
589589100%1e-16499%KU740184.2
589589100%1e-16499%KU853013.1
589589100%1e-16499%KU853012.1
589589100%1e-16499%KU729218.1
589589100%1e-16499%KU761564.1
589589100%1e-16499%KU527068.1
589589100%1e-16499%KU647676.1
589589100%1e-16499%KU365778.1
589589100%1e-16499%KU312314.1
589589100%1e-16499%KU312313.1
589589100%1e-16499%AB908162.1
585585100%2e-16399%KX197192.1
585585100%2e-16399%KX185891.1
585585100%2e-16399%KX156776.1
585585100%2e-16399%KX156775.1
585585100%2e-16399%KX156774.1
585585100%2e-16399%KX117076.1
585585100%2e-16399%KX087102.1
585585100%2e-16399%KX087101.1
585585100%2e-16399%KX056898.1
585585100%2e-16399%KU963796.1
585585100%2e-16399%KU991811.1
585585100%2e-16399%KU955590.1
585585100%2e-16399%KU955589.1
585585100%2e-16399%KU926310.1
585585100%2e-16399%KU926309.1
585585100%2e-16399%KU922923.1
585585100%2e-16399%KU866423.1
585585100%2e-16399%KU820899.2
585585100%2e-16399%KU820897.1
585585100%2e-16399%KU497555.1
585585100%2e-16399%KU707826.1
585585100%2e-16399%KU501217.1
585585100%2e-16399%KU501216.1
585585100%2e-16399%KU501215.1
585585100%2e-16399%KU365780.1
585585100%2e-16399%KU365779.1
585585100%2e-16399%KU365777.1
585585100%2e-16399%KU312312.1
585585100%2e-16399%KU321639.1
585585100%2e-16399%KJ776791.1
580580100%8e-16299%KU955593.1
580580100%8e-16299%KU681081.3
580580100%8e-16299%KU744693.1
580580100%8e-16299%KF993678.1
580580100%8e-16299%JN860885.1
576576100%9e-16199%KU729217.2
567567100%5e-15898%EU545988.1
56556599%2e-15798%KU681082.3
562562100%2e-15698%KU686218.1
54754793%5e-15299%KU312315.1
54554593%2e-15199%KU940227.1
52952989%1e-146100%KU646828.1
52952989%1e-14699%KM212966.1
52652689%1e-14599%KM212965.1
52652689%1e-14599%KM212964.1
52652689%1e-14599%KM212963.1
52452489%5e-14599%KU646827.1
52452489%5e-14599%KJ634273.1
513513100%9e-14295%HQ234499.1
50250285%2e-13899%KJ579441.1
49949985%2e-13799%KJ680134.1
486486100%1e-13393%KF268949.1
471471100%3e-12992%KF383115.1
468468100%3e-12891%KF268950.1
468468100%3e-12891%KF268948.1
462462100%1e-12691%KU963574.1
462462100%1e-12691%HQ234500.1
459459100%2e-12591%KU963573.1
459459100%2e-12591%KU955594.1
459459100%2e-12591%KF383117.1
459459100%2e-12591%KF383116.1
459459100%2e-12591%DQ859059.1
459459100%2e-12591%AY632535.2
45345377%8e-12499%KX101061.1
453453100%8e-12491%KU720415.1
453453100%8e-12491%LC002520.1
453453100%8e-12491%KF383121.1
453453100%8e-12491%KF383119.1
453453100%8e-12491%HQ234498.1
45245275%3e-123100%KX101066.1
450450100%9e-12390%KX198134.1
450450100%9e-12390%KU955595.1
450450100%9e-12390%KU955592.1
450450100%9e-12390%KU955591.1
450450100%9e-12390%HQ234501.1
44344374%1e-120100%KX173843.1
44344399%1e-12090%KF383120.1
43743773%6e-119100%KX173844.1
42142172%5e-11499%KU954085.1
41741770%6e-113100%KU926326.1
41741770%6e-113100%KU926325.1
41741770%6e-113100%KU926324.1
41741770%6e-113100%KU926323.1
41641672%2e-11299%KT381874.1
38338398%1e-10286%KF383118.1
21721791%1e-5276%DQ859064.1
16816829%5e-3899%KX101064.1
14114123%6e-30100%KU985088.1
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LOCUS       KX173841                 927 bp    RNA     linear   VRL 06-MAY-2016
DEFINITION  Zika virus isolate 16Z11 envelope protein gene, partial cds.
ACCESSION   KX173841
VERSION     KX173841.1  GI:1026288129
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Motta,I.J.F., Spencer,B.R., Silva,S.G.C., Arruda,M.B., Dobbin,J.A.,
            Gonzaga,Y.B.M., Arcuri,I.P., Tavares,R.C.B.S., Atta,E.H.,
            Fernandes,R.F.M., Costa,D.A., Ribeiro,L.J., Limonte,F., Higa,L.M.,
            Voloch,C.M., Brindeiro,R.M., Tanuri,A. and Ferreira,O.C. Jr.
  TITLE     Transmission of Zika Virus by Platelet Transfusion
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 927)
  AUTHORS   Motta,I.J.F., Spencer,B.R., Silva,S.G.C., Arruda,M.B., Dobbin,J.A.,
            Gonzaga,Y.B.M., Arcuri,I.P., Tavares,R.C.B.S., Atta,E.H.,
            Fernandes,R.F.M., Costa,D.A., Ribeiro,L.J., Limonte,F., Higa,L.M.,
            Voloch,C.M., Brindeiro,R.M., Tanuri,A. and Ferreira,O.C. Jr.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2016) Genetics Dept. and Clementino Fraga Filho
            University Hospital, Federal University of Rio de Janeiro, Rio de
            Janeiro, RJ 21942-901, Brazil
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: DNAstar v. 7.0.0; BioEdit v. 7.2.5
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="16Z11"
                     /isolation_source="plasma"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Brazil"
                     /collection_date="25-Jan-2016"
     CDS             <1..>927
                     /codon_start=1
                     /product="envelope protein"
                     /protein_id="ANC90421.1"
                     /db_xref="GI:1026288130"
                     /translation="LVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVT
                     VMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQY
                     VCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQH
                     SGMIVNDTGHETDENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTM
                     NNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGA
                     VHTALAGALEAEMDGAKGRLSSGHLKCRLKMDK"
ORIGIN      
        1 ttggtcatga tactgctgat tgccccggca tatagcatca ggtgcatagg agtcagcaat
       61 agggactttg tggaaggtat gtcaggtggg acttgggttg atgttgtctt ggaacatgga
      121 ggttgtgtca ccgtaatggc acaggacaaa ccgactgtcg acatagagct ggttacaaca
      181 acagtcagca acatggcgga ggtaagatcc tactgctatg aggcatcaat atcagacatg
      241 gcttcggaca gccgctgccc aacacaaggt gaagcctacc ttgacaagca atcagacact
      301 caatatgtct gcaaaagaac gttagtggac agaggctggg gaaatggatg tggacttttt
      361 ggcaaaggga gcctggtgac atgcgctaag tttgcatgct ccaagaaaat gaccgggaag
      421 agcatccagc cagagaatct ggagtaccgg ataatgctgt cagttcatgg ctcccagcac
      481 agtgggatga tcgttaatga cacaggacat gaaactgatg agaatagagc gaaggttgag
      541 ataacgccca attcaccgag agccgaagcc accctggggg gttttggaag cctaggactt
      601 gattgtgaac cgaggacagg ccttgacttt tcagatttgt attacttgac tatgaataac
      661 aagcactggt tggttcacaa ggagtggttc cacgacattc cattaccttg gcacgctggg
      721 gcagacaccg gaactccaca ctggaacaac aaagaagcac tggtagagtt caaggacgca
      781 catgccaaaa ggcaaactgt cgtggttcta gggagtcaag aaggagcagt tcacacggcc
      841 cttgctggag ctctggaggc tgagatggat ggtgcaaagg gaaggctgtc ctctggccac
      901 ttgaaatgtc gcctgaaaat ggataaa
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Sequences producing significant alignments:

Select:AllNone Selected:0

Sequences producing significant alignments:
Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
16731673100%0.0100%KX173841.1
16731673100%0.0100%KX173840.1
16631663100%0.099%KU870645.1
16581658100%0.099%KX185891.1
16581658100%0.099%KU937936.1
16581658100%0.099%KX117076.1
16581658100%0.099%KX087101.1
16581658100%0.099%KX051563.1
16581658100%0.099%KU509998.3
16581658100%0.099%KU963796.1
16581658100%0.099%KU991811.1
16581658100%0.099%KU940228.1
16581658100%0.099%KU955589.1
16581658100%0.099%KU922960.1
16581658100%0.099%KU866423.1
16581658100%0.099%KU853013.1
16581658100%0.099%KU853012.1
16581658100%0.099%KU820899.2
16581658100%0.099%KU729218.1
16581658100%0.099%KU527068.1
16581658100%0.099%KU647676.1
16581658100%0.099%KU501215.1
16581658100%0.099%KU365778.1
16581658100%0.099%KU312314.1
16581658100%0.099%KJ776791.1
16541654100%0.099%KX198135.1
16541654100%0.099%KX197192.1
16541654100%0.099%KX156776.1
16541654100%0.099%KX156775.1
16541654100%0.099%KX156774.1
16541654100%0.099%KX101060.1
16541654100%0.099%KU926310.1
16541654100%0.099%KU926309.1
16541654100%0.099%KU922923.1
16541654100%0.099%KU501217.1
16541654100%0.099%KU501216.1
16541654100%0.099%KU321639.1
16511651100%0.099%KU940224.1
16491649100%0.099%KX087102.1
16491649100%0.099%KU820898.1
16491649100%0.099%KU740184.2
16491649100%0.099%KU820897.1
16491649100%0.099%KU761564.1
16491649100%0.099%KU497555.1
16491649100%0.099%KU707826.1
16491649100%0.099%KU365780.1
16491649100%0.099%KU365779.1
16491649100%0.099%KU365777.1
16491649100%0.099%KU312313.1
16451645100%0.099%KX056898.1
16451645100%0.099%KU955590.1
16451645100%0.099%KU729217.2
16451645100%0.099%KU681081.3
16451645100%0.099%KU312312.1
16361636100%0.099%KU744693.1
16311631100%0.099%KU955593.1
16311631100%0.099%JN860885.1
16271627100%0.099%KF993678.1
16221622100%0.099%EU545988.1
1613161397%0.099%KU312315.1
1602160299%0.098%KU681082.3
1599159996%0.099%KU646828.1
1590159096%0.099%KJ634273.1
1584158496%0.099%KU646827.1
1516151690%0.099%KX173843.1
1510151090%0.099%KX173844.1
14981498100%0.096%HQ234499.1
1238123899%0.090%KF268950.1
1238123899%0.090%KF268948.1
1214121499%0.089%KU955595.1
1214121499%0.089%KF383116.1
1211121199%0.089%KX198134.1
1211121199%0.089%KU955592.1
1211121199%0.089%KU955591.1
1211121199%0.089%HQ234501.1
1193119399%0.089%KU720415.1
1193119399%0.089%KF383121.1
1193119399%0.089%KF383119.1
1193119399%0.089%HQ234498.1
1180118099%0.088%KF383115.1
1178117899%0.088%LC002520.1
1177117799%0.088%KF268949.1
1173117399%0.088%KU963574.1
1173117399%0.088%HQ234500.1
1169116999%0.088%KF383117.1
1162116299%0.088%KU963573.1
1159115999%0.088%KU955594.1
1159115999%0.087%DQ859059.1
1159115999%0.088%AY632535.2
1106110699%0.087%KF383118.1
1011101199%0.084%KF383120.1
874136782%0.099%KX101061.1
870136281%0.099%KX101066.1
67267257%0.088%KF270886.1
64564538%0.099%KU985088.1
64564553%0.089%KF383039.1
64564553%0.089%KF383032.1
64564553%0.089%KF383022.1
64164153%8e-18088%KF383034.1
64164153%8e-18088%KF383026.1
63663653%3e-17888%KF383033.1
63663653%3e-17888%KF383029.1
63263253%4e-17788%KF383046.1
62762753%2e-17588%KF383038.1
62162153%8e-17488%KF383037.1
61861853%9e-17388%KF383036.1
61861853%9e-17387%KF383028.1
61661657%3e-17285%AF372422.1
60960953%5e-17087%KF383045.1
60960953%5e-17087%KF383031.1
60560553%6e-16987%KF383043.1
60060053%2e-16787%KF383042.1
60060053%2e-16787%KF383041.1
59459435%1e-165100%KX173842.1
58958935%4e-16499%AB908162.1
58358353%2e-16286%KF383040.1
58058053%2e-16185%KF383035.1
57457436%1e-15997%KU686218.1
545104875%5e-15199%KU940227.1
52952931%4e-14699%KM212966.1
52652631%4e-14599%KM212965.1
52652631%4e-14599%KM212964.1
52652631%4e-14599%KM212963.1
50250230%5e-13899%KJ579441.1
49949930%6e-13799%KJ680134.1
46146153%2e-12580%KF383017.1
46146153%2e-12580%KF383015.1
45545553%7e-12480%KF383016.1
45245253%8e-12380%KF383020.1
45045053%3e-12280%KF383021.1
44644653%3e-12180%KF383019.1
42542597%1e-11471%DQ859064.1
42142125%1e-11399%KU954085.1
41741724%2e-112100%KU926326.1
41741724%2e-112100%KU926325.1
41741724%2e-112100%KU926324.1
41741724%2e-112100%KU926323.1
41641625%6e-11299%KT381874.1
35435421%2e-9399%KR815989.1
31531518%1e-81100%KX062045.1
31531518%1e-81100%KX062044.1
27727716%4e-70100%KR816334.1
27727716%4e-70100%KR816333.1
27127116%2e-6899%KR816335.1
16832119%1e-3799%KX101064.1
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LOCUS       KX173840                 927 bp    RNA     linear   VRL 06-MAY-2016
DEFINITION  Zika virus isolate 16Z10 envelope protein gene, partial cds.
ACCESSION   KX173840
VERSION     KX173840.1  GI:1026288127
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Motta,I.J.F., Spencer,B.R., Silva,S.G.C., Arruda,M.B., Dobbin,J.A.,
            Gonzaga,Y.B.M., Arcuri,I.P., Tavares,R.C.B.S., Atta,E.H.,
            Fernandes,R.F.M., Costa,D.A., Ribeiro,L.J., Limonte,F., Higa,L.M.,
            Voloch,C.M., Brindeiro,R.M., Tanuri,A. and Ferreira,O.C. Jr.
  TITLE     Transmission of Zika Virus by Platelet Transfusion
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 927)
  AUTHORS   Motta,I.J.F., Spencer,B.R., Silva,S.G.C., Arruda,M.B., Dobbin,J.A.,
            Gonzaga,Y.B.M., Arcuri,I.P., Tavares,R.C.B.S., Atta,E.H.,
            Fernandes,R.F.M., Costa,D.A., Ribeiro,L.J., Limonte,F., Higa,L.M.,
            Voloch,C.M., Brindeiro,R.M., Tanuri,A. and Ferreira,O.C. Jr.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-MAY-2016) Genetics Dept. and Clementino Fraga Filho
            University Hospital, Federal University of Rio de Janeiro, Rio de
            Janeiro, RJ 21942-901, Brazil
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: DNAstar v. 7.0.0; BioEdit v. 7.2.5
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="16Z10"
                     /isolation_source="plasma"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Brazil"
                     /collection_date="16-Jan-2016"
     CDS             <1..>927
                     /codon_start=1
                     /product="envelope protein"
                     /protein_id="ANC90420.1"
                     /db_xref="GI:1026288128"
                     /translation="LVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVT
                     VMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQY
                     VCKRTLVDRGWGNGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQH
                     SGMIVNDTGHETDENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTM
                     NNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGA
                     VHTALAGALEAEMDGAKGRLSSGHLKCRLKMDK"
ORIGIN      
        1 ttggtcatga tactgctgat tgccccggca tatagcatca ggtgcatagg agtcagcaat
       61 agggactttg tggaaggtat gtcaggtggg acttgggttg atgttgtctt ggaacatgga
      121 ggttgtgtca ccgtaatggc acaggacaaa ccgactgtcg acatagagct ggttacaaca
      181 acagtcagca acatggcgga ggtaagatcc tactgctatg aggcatcaat atcagacatg
      241 gcttcggaca gccgctgccc aacacaaggt gaagcctacc ttgacaagca atcagacact
      301 caatatgtct gcaaaagaac gttagtggac agaggctggg gaaatggatg tggacttttt
      361 ggcaaaggga gcctggtgac atgcgctaag tttgcatgct ccaagaaaat gaccgggaag
      421 agcatccagc cagagaatct ggagtaccgg ataatgctgt cagttcatgg ctcccagcac
      481 agtgggatga tcgttaatga cacaggacat gaaactgatg agaatagagc gaaggttgag
      541 ataacgccca attcaccgag agccgaagcc accctggggg gttttggaag cctaggactt
      601 gattgtgaac cgaggacagg ccttgacttt tcagatttgt attacttgac tatgaataac
      661 aagcactggt tggttcacaa ggagtggttc cacgacattc cattaccttg gcacgctggg
      721 gcagacaccg gaactccaca ctggaacaac aaagaagcac tggtagagtt caaggacgca
      781 catgccaaaa ggcaaactgt cgtggttcta gggagtcaag aaggagcagt tcacacggcc
      841 cttgctggag ctctggaggc tgagatggat ggtgcaaagg gaaggctgtc ctctggccac
      901 ttgaaatgtc gcctgaaaat ggataaa
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