2015 Iowa Swine Match To Human H1N1v Case

niman · September 2, 2015

USDA has released at 2015 H1N1v swine sequence that matches humna case.

niman · September 2, 2015

LOCUS       KT164865                1701 bp    cRNA    linear   VRL 11-JUL-2015
DEFINITION  Influenza A virus (A/swine/Iowa/A02077588/2015(H1N1)) segment 4
            hemagglutinin (HA) gene, complete cds.
ACCESSION   KT164865
VERSION     KT164865.1  GI:868890040
KEYWORDS    .
SOURCE      Influenza A virus (A/swine/Iowa/A02077588/2015(H1N1))
  ORGANISM  Influenza A virus (A/swine/Iowa/A02077588/2015(H1N1))
            Viruses; ssRNA viruses; ssRNA negative-strand viruses;
            Orthomyxoviridae; Influenzavirus A.
REFERENCE   1  (bases 1 to 1701)
  AUTHORS   Lin,K., Olson,W.J. and Zhang,J.
  CONSRTM   USDA SIV Survelliance
  TITLE     Direct Submission
  JOURNAL   Submitted (17-JUN-2015) National Veterinary Services Laboratory,
            USDA, 1920 Dayton, Ames, IA 50010, USA
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Influenza A virus
                     (A/swine/Iowa/A02077588/2015(H1N1))"
                     /mol_type="viral cRNA"
                     /strain="A/swine/Iowa/A02077588/2015"
                     /serotype="H1N1"
                     /isolation_source="lung"
                     /host="swine"
                     /db_xref="taxon:1671415"
                     /segment="4"
                     /country="USA: Iowa"
                     /collection_date="13-May-2015"
     gene            1..1701
                     /gene="HA"
     CDS             1..1701
                     /gene="HA"
                     /function="receptor binding and fusion protein"
                     /codon_start=1
                     /product="hemagglutinin"
                     /protein_id="AKP04476.1"
                     /db_xref="GI:868890041"
                     /translation="MKAILVVLLYTFTTANADTLCIGYHANNSTDTVDTVLEKNVTVT
                     HSVNLLENRHNGKLCKLRGVAPLHLGKCNIAGWILGNPECESLSTASSWSYIVETSNS
                     ENGTCYPGDFINYEELREQLSSVSSFERFEIFPKTSSWPNHDTNKGVTAACPHAGTNS
                     FYRNLVWLVQKGNSYPKINKSYINNKENEVLVLWAIHHPSTSADQQSLYKNADAYVFV
                     GSSRYSRKFEPEIATRPKVRDQAGRMNYYWTLVEPGDKITFEATGNLVAPRYAFTLKR
                     NSGSGIIISDTSVHDCDTTCQTPNGAINTSLPFQNIHPVTIGECPKYVKSTKLRMATG
                     LRNIPSIQSRGLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADLKSTQNAIDGI
                     TNKVNSVIEKMNTQFTAVGKEFSHLERRIENLNKKVDDGFLDIWTYNAELLVLLENER
                     TLDYHDSNVKNLYEKVRSQLKNNAKEIGNGCFEFYHKCDDMCMESVKNGTYDYPKYSE
                     EAKLNREEIDGVKLESTRIYQILAIYSTVASSLVLVVSLGAISFWMCSNGSLQCRICI
                     "
     sig_peptide     1..51
                     /gene="HA"
     mat_peptide     52..1032
                     /gene="HA"
                     /product="HA1"
     mat_peptide     1033..1698
                     /gene="HA"
                     /product="HA2"
     misc_feature    1..1701
                     /db_xref="IRD:IRD-A02077588.4"
ORIGIN      
        1 atgaaggcaa tactagtagt cctgctatat acatttacaa ccgcaaatgc cgacacatta
       61 tgtataggtt atcatgcaaa caattcaact gacaccgtag acacagtact agaaaagaat
      121 gtaacagtaa cacactctgt caaccttcta gaaaacaggc ataatgggaa actatgcaaa
      181 ctaagagggg tagctccatt gcacttgggt aaatgtaaca ttgctggatg gattctggga
      241 aatccagagt gtgaatcact ctccacagca agctcatggt cctacattgt ggaaacatct
      301 aattcagaaa atgggacgtg ttacccagga gatttcataa attatgagga gctaagagag
      361 cagttgagct cagtgtcatc atttgaaaga tttgagatat tccccaagac aagttcatgg
      421 cccaatcatg acacgaacaa aggtgtgacg gcagcatgtc ctcatgctgg gacaaacagc
      481 ttctacagaa atttagtatg gctagtacaa aagggaaatt catacccaaa aatcaacaaa
      541 tcctacatta acaataaaga gaatgaagtt ctcgtgctat gggccattca ccatccatct
      601 accagtgccg accaacagag tctctacaaa aatgcagatg cctatgtgtt tgtggggtca
      661 tcaagataca gcaggaagtt cgagccagaa atagcaacaa gacctaaagt gagagaccaa
      721 gcagggagaa tgaattatta ctggacacta gtagagcctg gagacaagat aacattcgaa
      781 gcaactggaa atctagtggc accgagatat gccttcacat tgaaaagaaa ttctggatct
      841 ggtattatca tttcagatac atcagtccac gattgtgata caacttgtca gacacccaat
      901 ggtgctataa acaccagcct cccatttcaa aatatacatc cagtcacaat tggagaatgt
      961 ccaaaatatg taaaaagtac taaactgaga atggccacag gtttaaggaa tatcccgtct
     1021 attcaatcta gaggcctgtt tggtgccatt gctggcttta ttgaaggggg ttggacagga
     1081 atgatagatg gatggtacgg ttatcaccat caaaatgagc agggatcagg atatgcagcc
     1141 gacctgaaga gcacacaaaa tgccattgat gggatcacta acaaggtgaa ctctgttatt
     1201 gaaaagatga acacccaatt cacggcagta ggtaaagagt tcagccactt ggaaagaaga
     1261 atagagaatt taaataaaaa ggttgatgat ggttttctag atatttggac ttacaatgcc
     1321 gaactgttgg ttctattgga aaatgaacga actttggatt accacgactc aaatgtgaaa
     1381 aacttatatg aaaaagtaag aagccaacta aaaaacaatg ccaaggaaat tgggaatggc
     1441 tgctttgaat tttaccacaa atgtgatgac atgtgcatgg aaagcgtcaa aaatggaact
     1501 tatgattacc ctaaatactc agaggaagca aaactaaaca gagaggaaat agatggggta
     1561 aagttggaat caacaaggat ttaccaaatt ttggcgatct attcaacggt cgccagttca
     1621 ttggtactgg tagtctccct gggggcaatc agtttctgga tgtgctctaa tgggtcgcta
     1681 cagtgcagaa tatgtattta a

niman · September 2, 2015

Segment-ID	Name	Score	E-Value	Identity
EPI623632	A/swine/Iowa/A02077588/2015 (A/H1N1) segment 4 (HA)	3142.3	0.000000e+00	1701/1701 (100%)
EPI590763	A/swine/Nebraska/A01489937/2015 (A/H1N1) segment 4 (HA)	3142.3	0.000000e+00	1701/1701 (100%)
EPI590745	A/swine/Nebraska/A01847039/2015 (A/H1N1) segment 4 (HA)	3142.3	0.000000e+00	1701/1701 (100%)
EPI590510	A/swine/Nebraska/A01489936/2015 (A/H1N1) segment 4 (HA)	3142.3	0.000000e+00	1701/1701 (100%)
EPI590507	A/swine/Nebraska/A01847041/2015 (A/H1N1) segment 4 (HA)	3142.3	0.000000e+00	1701/1701 (100%)
EPI584879	A/swine/Nebraska/A01489614/2015 (A/H1N1) segment 4 (HA)	3142.3	0.000000e+00	1701/1701 (100%)
EPI615091	A/swine/Nebraska/A01847898/2015 (A/H1N1) segment 4 (HA)	3138.6	0.000000e+00	1700/1701 (99%)
EPI641552	A/swine/Nebraska/A01822990/2015 (A/H1N1) segment 4 (HA)	3136.7	0.000000e+00	1700/1701 (99%)
EPI620716	A/swine/Kansas/A01377485/2015 (A/H1N1) segment 4 (HA)	3136.7	0.000000e+00	1700/1701 (99%)
EPI584772	A/swine/Nebraska/A01840928/2015 (A/H1N1) segment 4 (HA)	3136.7	0.000000e+00	1700/1701 (99%)
EPI584749	A/swine/Nebraska/A01840930/2015 (A/H1N1) segment 4 (HA)	3136.7	0.000000e+00	1700/1701 (99%)
EPI584837	A/swine/Nebraska/A01489603/2015 (A/H1N1) segment 4 (HA)	3134.9	0.000000e+00	1699/1701 (99%)
EPI638970	A/Iowa/39/2015 (A/H1N1) segment 4 (HA)	3131.2	0.000000e+00	1699/1701 (99%)
EPI621558	A/swine/Nebraska/A01822366/2015 (A/H1N1) segment 4 (HA)	3131.2	0.000000e+00	1699/1701 (99%)
EPI621552	A/swine/Nebraska/A01822363/2015 (A/H1N1) segment 4 (HA)	3131.2	0.000000e+00	1699/1701 (99%)
EPI621549	A/swine/Nebraska/A01822370/2015 (A/H1N1) segment 4 (HA)	3131.2	0.000000e+00	1699/1701 (99%)
EPI620717	A/swine/Kansas/A01377518/2015 (A/H1N1) segment 4 (HA)	3131.2	0.000000e+00	1699/1701 (99%)
EPI612735	A/swine/South Dakota/A01847802/2015 (A/H1N1) segment 4 (HA)	3131.2	0.000000e+00	1699/1701 (99%)
EPI612550	A/swine/South Dakota/A01471016/2015 (A/H1N1) segment 4 (HA)	3131.2	0.000000e+00	1699/1701 (99%)
EPI508855	A/swine/Iowa/A01410104/2014 (A/H1N1) segment 4 (HA)	3099.8	0.000000e+00	1693/1701 (99%)
EPI615102	A/swine/Kansas/A01377560/2015 (A/H1N1) segment 4 (HA)	3098.0	0.000000e+00	1683/1686 (99%)
EPI615099	A/swine/Kansas/A01377531/2015 (A/H1N1) segment 4 (HA)	3098.0	0.000000e+00	1685/1689 (99%)
EPI597685	A/swine/Minnesota/A01566469/2014 (A/H1N1) segment 4 (HA)	3088.7	0.000000e+00	1691/1701 (99%)
EPI510250	A/swine/Iowa/A01480170/2014 (A/H1N1) segment 4 (HA)	3086.9	0.000000e+00	1685/1692 (99%)
EPI489716	A/swine/Minnesota/A01394048/2013 (A/H1N1) segment 4 (HA)	3086.9	0.000000e+00	1691/1701 (99%)
EPI487199	A/swine/Iowa/A01290542/2013 (A/H1N1) segment 4 (HA)	3086.9	0.000000e+00	1691/1701 (99%)
EPI487993	A/swine/Iowa/A01290613/2013 (A/H1N1) segment 4 (HA)	3083.2	0.000000e+00	1690/1701 (99%)
EPI548247	A/swine/Minnesota/A01476503/2014 (A/H1N1) segment 4 (HA)	3081.3	0.000000e+00	1690/1701 (99%)
EPI506611	A/swine/Minnesota/A01490569/2013 (A/H1N1) segment 4 (HA)	3081.3	0.000000e+00	1690/1701 (99%)
EPI573455	A/swine/Iowa/A01478359/2014 (A/H1N1) segment 4 (HA)	3075.8	0.000000e+00	1689/1701 (99%)
EPI600419	A/swine/Iowa/A01476905/2014 (A/H1N1) segment 4 (HA)	3070.3	0.000000e+00	1688/1701 (99%)
EPI586098	A/swine/Minnesota/A01489545/2015 (A/H1N1) segment 4 (HA)	3070.3	0.000000e+00	1688/1701 (99%)
EPI586083	A/swine/Minnesota/A01489544/2015 (A/H1N1) segment 4 (HA)	3070.3	0.000000e+00	1688/1701 (99%)
EPI550302	A/swine/Iowa/A01410969/2014 (A/H1N1) segment 4 (HA)	3070.3	0.000000e+00	1688/1701 (99%)
EPI623606	A/swine/Minnesota/A01471412/2015 (A/H1N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI574169	A/swine/South Dakota/A01469598/2015 (A/H1N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI545394	A/swine/Iowa/A01476323/2014 (A/H1N1) segment 4 (HA)	3064.7	0.000000e+00	1687/1701 (99%)
EPI620707	A/swine/South Dakota/A01470837/2015 (A/H1N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI596351	A/swine/Iowa/A02076005/2015 (A/H1N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI590671	A/swine/Minnesota/A02076045/2015 (A/H1N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI559506	A/swine/Iowa/A01476573/2014 (A/H1N1) segment 4 (HA)	3059.2	0.000000e+00	1686/1701 (99%)
EPI506674	A/swine/Minnesota/A01366684/2014 (A/H1N1) segment 4 (HA)	3059.2	0.000000e+00	1680/1692 (99%)
EPI620517	A/swine/Minnesota/A02076858/2015 (A/H1N1) segment 4 (HA)	3053.6	0.000000e+00	1685/1701 (99%)
EPI612544	A/swine/South Dakota/A01470998/2015 (A/H1N1) segment 4 (HA)	3053.6	0.000000e+00	1687/1703 (99%)
EPI558848	A/swine/Iowa/A01477717/2014 (A/H1N1) segment 4 (HA)	3053.6	0.000000e+00	1685/1701 (99%)
EPI510253	A/swine/Iowa/A01480171/2014 (A/H1N1) segment 4 (HA)	3053.6	0.000000e+00	1679/1692 (99%)
EPI623638	A/swine/Minnesota/A02076882/2015 (A/H1N1) segment 4 (HA)	3049.9	0.000000e+00	1684/1701 (99%)
EPI620596	A/swine/Iowa/A02077346/2015 (A/H1N1) segment 4 (HA)	3049.9	0.000000e+00	1684/1701 (99%)
EPI509715	A/swine/Minnesota/A01366929/2014 (A/H1N1) segment 4 (HA)	3049.9	0.000000e+00	1687/1704 (99%)
EPI641423	A/swine/Minnesota/A01822905/2015 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI620605	A/swine/Illinois/A02077404/2015 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI615348	A/swine/Minnesota/A01471082/2015 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI612714	A/swine/Minnesota/A01471032/2015 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1686/1703 (99%)
EPI612541	A/swine/Minnesota/A01470872/2015 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1686/1703 (99%)
EPI590790	A/swine/Missouri/A01554380/2015 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI590748	A/swine/Iowa/A01489883/2015 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1685/1702 (99%)
EPI590674	A/swine/Minnesota/A01470721/2015 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI590528	A/swine/Illinois/A01462984/2015 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI573425	A/swine/Missouri/A01567015/2014 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI548238	A/swine/Iowa/A01477623/2014 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1701 (99%)
EPI504934	A/swine/Minnesota/A01366468/2013 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1686/1703 (99%)
EPI504925	A/swine/Minnesota/A01366382/2013 (A/H1N1) segment 4 (HA)	3048.1	0.000000e+00	1684/1700 (99%)
EPI530341	A/swine/Minnesota/A01480795/2014 (A/H1N1) segment 4 (HA)	3044.4	0.000000e+00	1686/1704 (98%)
EPI641558	A/swine/Illinois/A01823191/2015 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI623647	A/swine/Iowa/A02076879/2015 (A/H0) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI621573	A/swine/Minnesota/A01847951/2015 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI615094	A/swine/Minnesota/A01847958/2015 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI600446	A/swine/Iowa/A01476909/2014 (A/H1N2) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI600398	A/swine/Iowa/A01477800/2014 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI600362	A/swine/Iowa/A01476996/2014 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI600324	A/swine/Iowa/A01566804/2014 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI600321	A/swine/Iowa/A01566813/2014 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI593657	A/swine/Minnesota/A01567678/2015 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI590782	A/swine/Missouri/A01554320/2015 (A/H0) segment 4 (HA)	3042.6	0.000000e+00	1684/1702 (98%)
EPI586089	A/swine/Minnesota/A01489611/2015 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI559584	A/swine/Iowa/A01476550/2014 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI546873	A/swine/Iowa/A01502541/2014 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI406570	A/swine/Minnesota/A01203885/2012 (A/H1N1) segment 4 (HA)	3042.6	0.000000e+00	1683/1701 (98%)
EPI584817	A/swine/Illinois/A02077009/2015 (A/H1N2) segment 4 (HA)	3038.9	0.000000e+00	1682/1701 (98%)
EPI641538	A/swine/Pennsylvania/A02024933/2015 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI623666	A/swine/Pennsylvania/A01554941/2015 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI620626	A/swine/Iowa/A02076598/2015 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI615351	A/swine/Minnesota/A01471246/2015 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI612583	A/swine/Iowa/A02076210/2015 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI612553	A/swine/Minnesota/A01471108/2015 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI612523	A/swine/Iowa/A02076432/2015 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI596354	A/swine/Indiana/A01841426/2015 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI593953	A/swine/Iowa/A01489009/2015 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI584861	A/swine/Iowa/A01489877/2015 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1683/1702 (98%)
EPI559581	A/swine/Iowa/A01476670/2014 (A/H1N1) segment 4 (HA)	3037.0	0.000000e+00	1682/1701 (98%)
EPI612511	A/swine/Iowa/A02076491/2015 (A/H1N1) segment 4 (HA)	3031.5	0.000000e+00	1681/1701 (98%)
EPI600771	A/swine/Iowa/A01469080/2014 (A/H1N1) segment 4 (HA)	3031.5	0.000000e+00	1681/1701 (98%)
EPI597658	A/swine/Iowa/A01476879/2014 (A/H1N1) segment 4 (HA)	3031.5	0.000000e+00	1681/1701 (98%)
EPI559539	A/swine/Iowa/A01476675/2014 (A/H1N1) segment 4 (HA)	3031.5	0.000000e+00	1681/1701 (98%)
EPI548272	A/swine/Iowa/A01478049/2014 (A/H1N1) segment 4 (HA)	3031.5	0.000000e+00	1681/1701 (98%)
EPI623657	A/swine/Illinois/A02076884/2015 (A/H1N1) segment 4 (HA)	3027.8	0.000000e+00	1681/1702 (98%)
EPI620796	A/swine/Minnesota/A01847567/2015 (A/H1N1) segment 4 (HA)	3025.9	0.000000e+00	1680/1701 (98%)
EPI641623	A/swine/Illinois/A02034081/2015 (A/H1N1) segment 4 (HA)	3022.2	0.000000e+00	1679/1701 (98%)
EPI597664	A/swine/Iowa/A01476808/2014 (A/H1N1) segment 4 (HA)	3020.4	0.000000e+00	1679/1701 (98%)
EPI533922	A/swine/Minnesota/A01481244/2014 (A/H1N1) segment 4 (HA)	3020.4	0.000000e+00	1673/1692 (98%)

niman · September 2, 2015

Segment-ID	Name	Score	E-Value	Identity
EPI641553	A/swine/Nebraska/A01822990/2015 (A/H1N1) segment 6 (NA)	2604.9	0.000000e+00	1410/1410 (100%)
EPI623633	A/swine/Iowa/A02077588/2015 (A/H1N1) segment 6 (NA)	2604.9	0.000000e+00	1410/1410 (100%)
EPI590764	A/swine/Nebraska/A01489937/2015 (A/H1N1) segment 6 (NA)	2604.9	0.000000e+00	1410/1410 (100%)
EPI590511	A/swine/Nebraska/A01489936/2015 (A/H1N1) segment 6 (NA)	2604.9	0.000000e+00	1410/1410 (100%)
EPI590508	A/swine/Nebraska/A01847041/2015 (A/H1N1) segment 6 (NA)	2604.9	0.000000e+00	1410/1410 (100%)
EPI584880	A/swine/Nebraska/A01489614/2015 (A/H1N1) segment 6 (NA)	2604.9	0.000000e+00	1410/1410 (100%)
EPI584838	A/swine/Nebraska/A01489603/2015 (A/H1N1) segment 6 (NA)	2604.9	0.000000e+00	1410/1410 (100%)
EPI590746	A/swine/Nebraska/A01847039/2015 (A/H1N1) segment 6 (NA)	2601.2	0.000000e+00	1409/1410 (99%)
EPI638969	A/Iowa/39/2015 (A/H1N1) segment 6 (NA)	2599.4	0.000000e+00	1409/1410 (99%)
EPI620718	A/swine/Kansas/A01377485/2015 (A/H1N1) segment 6 (NA)	2599.4	0.000000e+00	1409/1410 (99%)
EPI584773	A/swine/Nebraska/A01840928/2015 (A/H1N1) segment 6 (NA)	2599.4	0.000000e+00	1409/1410 (99%)
EPI584750	A/swine/Nebraska/A01840930/2015 (A/H1N1) segment 6 (NA)	2599.4	0.000000e+00	1409/1410 (99%)
EPI620719	A/swine/Kansas/A01377518/2015 (A/H1N1) segment 6 (NA)	2593.8	0.000000e+00	1408/1410 (99%)
EPI615092	A/swine/Nebraska/A01847898/2015 (A/H1N1) segment 6 (NA)	2593.8	0.000000e+00	1408/1410 (99%)
EPI621559	A/swine/Nebraska/A01822366/2015 (A/H1N1) segment 6 (NA)	2588.3	0.000000e+00	1407/1410 (99%)
EPI621553	A/swine/Nebraska/A01822363/2015 (A/H1N1) segment 6 (NA)	2588.3	0.000000e+00	1407/1410 (99%)
EPI621550	A/swine/Nebraska/A01822370/2015 (A/H1N1) segment 6 (NA)	2588.3	0.000000e+00	1407/1410 (99%)
EPI612736	A/swine/South Dakota/A01847802/2015 (A/H1N1) segment 6 (NA)	2588.3	0.000000e+00	1407/1410 (99%)
EPI612552	A/swine/South Dakota/A01471016/2015 (A/H1N1) segment 6 (NA)	2566.1	0.000000e+00	1403/1410 (99%)
EPI510252	A/swine/Iowa/A01480170/2014 (A/H1N1) segment 6 (NA)	2555.0	0.000000e+00	1401/1410 (99%)
EPI615101	A/swine/Kansas/A01377560/2015 (A/H1N1) segment 6 (NA)	2547.7	0.000000e+00	1386/1389 (99%)
EPI508856	A/swine/Iowa/A01410104/2014 (A/H1N1) segment 6 (NA)	2544.0	0.000000e+00	1399/1410 (99%)
EPI597686	A/swine/Minnesota/A01566469/2014 (A/H1N1) segment 6 (NA)	2534.7	0.000000e+00	1397/1410 (99%)
EPI615098	A/swine/Kansas/A01377531/2015 (A/H1N1) segment 6 (NA)	2531.0	0.000000e+00	1374/1376 (99%)
EPI484440	A/swine/Iowa/A01364403/2013 (A/H1N1) segment 6 (NA)	2527.3	0.000000e+00	1396/1410 (99%)
EPI548248	A/swine/Minnesota/A01476503/2014 (A/H1N1) segment 6 (NA)	2523.6	0.000000e+00	1395/1410 (98%)
EPI612546	A/swine/South Dakota/A01470998/2015 (A/H1N1) segment 6 (NA)	2521.8	0.000000e+00	1395/1410 (98%)
EPI612543	A/swine/Minnesota/A01470872/2015 (A/H1N1) segment 6 (NA)	2521.8	0.000000e+00	1395/1410 (98%)
EPI586099	A/swine/Minnesota/A01489545/2015 (A/H1N1) segment 6 (NA)	2521.8	0.000000e+00	1395/1410 (98%)
EPI510255	A/swine/Iowa/A01480171/2014 (A/H1N1) segment 6 (NA)	2521.8	0.000000e+00	1395/1410 (98%)
EPI487994	A/swine/Iowa/A01290613/2013 (A/H1N1) segment 6 (NA)	2521.8	0.000000e+00	1395/1410 (98%)
EPI487200	A/swine/Iowa/A01290542/2013 (A/H1N1) segment 6 (NA)	2521.8	0.000000e+00	1395/1410 (98%)
EPI623650	A/swine/Iowa/A02076879/2015 (A/H0) segment 6 (NA)	2516.3	0.000000e+00	1394/1410 (98%)
EPI621574	A/swine/Minnesota/A01847951/2015 (A/H1N1) segment 6 (NA)	2516.3	0.000000e+00	1394/1410 (98%)
EPI615095	A/swine/Minnesota/A01847958/2015 (A/H1N1) segment 6 (NA)	2516.3	0.000000e+00	1394/1410 (98%)
EPI586084	A/swine/Minnesota/A01489544/2015 (A/H1N1) segment 6 (NA)	2516.3	0.000000e+00	1394/1410 (98%)
EPI559507	A/swine/Iowa/A01476573/2014 (A/H1N1) segment 6 (NA)	2516.3	0.000000e+00	1394/1410 (98%)
EPI620518	A/swine/Minnesota/A02076858/2015 (A/H1N1) segment 6 (NA)	2510.7	0.000000e+00	1393/1410 (98%)
EPI615350	A/swine/Minnesota/A01471082/2015 (A/H1N1) segment 6 (NA)	2510.7	0.000000e+00	1393/1410 (98%)
EPI593954	A/swine/Iowa/A01489009/2015 (A/H1N1) segment 6 (NA)	2510.7	0.000000e+00	1393/1410 (98%)
EPI590676	A/swine/Minnesota/A01470721/2015 (A/H1N1) segment 6 (NA)	2510.7	0.000000e+00	1393/1410 (98%)
EPI546874	A/swine/Iowa/A01502541/2014 (A/H1N1) segment 6 (NA)	2510.7	0.000000e+00	1393/1410 (98%)
EPI506676	A/swine/Minnesota/A01366684/2014 (A/H1N1) segment 6 (NA)	2510.7	0.000000e+00	1393/1410 (98%)
EPI504936	A/swine/Minnesota/A01366468/2013 (A/H1N1) segment 6 (NA)	2510.7	0.000000e+00	1393/1410 (98%)
EPI504927	A/swine/Minnesota/A01366382/2013 (A/H1N1) segment 6 (NA)	2510.7	0.000000e+00	1393/1410 (98%)
EPI641424	A/swine/Minnesota/A01822905/2015 (A/H1N1) segment 6 (NA)	2505.2	0.000000e+00	1392/1410 (98%)
EPI623608	A/swine/Minnesota/A01471412/2015 (A/H1N1) segment 6 (NA)	2505.2	0.000000e+00	1392/1410 (98%)
EPI615353	A/swine/Minnesota/A01471246/2015 (A/H1N1) segment 6 (NA)	2505.2	0.000000e+00	1392/1410 (98%)
EPI612716	A/swine/Minnesota/A01471032/2015 (A/H1N1) segment 6 (NA)	2505.2	0.000000e+00	1392/1410 (98%)
EPI612555	A/swine/Minnesota/A01471108/2015 (A/H1N1) segment 6 (NA)	2505.2	0.000000e+00	1392/1410 (98%)
EPI590672	A/swine/Minnesota/A02076045/2015 (A/H1N1) segment 6 (NA)	2505.2	0.000000e+00	1392/1410 (98%)
EPI586090	A/swine/Minnesota/A01489611/2015 (A/H1N1) segment 6 (NA)	2505.2	0.000000e+00	1392/1410 (98%)
EPI489717	A/swine/Minnesota/A01394048/2013 (A/H1N1) segment 6 (NA)	2505.2	0.000000e+00	1392/1410 (98%)
EPI548273	A/swine/Iowa/A01478049/2014 (A/H1N1) segment 6 (NA)	2503.3	0.000000e+00	1391/1410 (98%)
EPI550303	A/swine/Iowa/A01410969/2014 (A/H1N1) segment 6 (NA)	2501.5	0.000000e+00	1391/1410 (98%)
EPI620709	A/swine/South Dakota/A01470837/2015 (A/H1N1) segment 6 (NA)	2499.6	0.000000e+00	1391/1410 (98%)
EPI533924	A/swine/Minnesota/A01481244/2014 (A/H1N1) segment 6 (NA)	2499.6	0.000000e+00	1391/1410 (98%)
EPI509717	A/swine/Minnesota/A01366929/2014 (A/H1N1) segment 6 (NA)	2499.6	0.000000e+00	1391/1410 (98%)
EPI506612	A/swine/Minnesota/A01490569/2013 (A/H1N1) segment 6 (NA)	2499.6	0.000000e+00	1391/1410 (98%)
EPI600420	A/swine/Iowa/A01476905/2014 (A/H1N1) segment 6 (NA)	2495.9	0.000000e+00	1390/1410 (98%)
EPI620779	A/swine/Iowa/A01847330/2015 (A/H1N1) segment 6 (NA)	2494.1	0.000000e+00	1390/1410 (98%)
EPI530343	A/swine/Minnesota/A01480795/2014 (A/H1N1) segment 6 (NA)	2494.1	0.000000e+00	1390/1410 (98%)
EPI612505	A/swine/Illinois/A01554521/2015 (A/H1N1) segment 6 (NA)	2488.6	0.000000e+00	1389/1410 (98%)
EPI574171	A/swine/South Dakota/A01469598/2015 (A/H1N1) segment 6 (NA)	2483.0	0.000000e+00	1389/1411 (98%)
EPI559585	A/swine/Iowa/A01476550/2014 (A/H1N1) segment 6 (NA)	2483.0	0.000000e+00	1388/1410 (98%)
EPI406569	A/swine/Minnesota/A01203885/2012 (A/H1N1) segment 6 (NA)	2483.0	0.000000e+00	1388/1410 (98%)
EPI399104	A/swine/Iowa/A01328941/2012 (A/H1N1) segment 6 (NA)	2483.0	0.000000e+00	1388/1410 (98%)
EPI612512	A/swine/Iowa/A02076491/2015 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1388/1411 (98%)
EPI600325	A/swine/Iowa/A01566804/2014 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI600322	A/swine/Iowa/A01566813/2014 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI597665	A/swine/Iowa/A01476808/2014 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI559540	A/swine/Iowa/A01476675/2014 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI472527	A/swine/South Dakota/A01364180/2013 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI459453	A/swine/Minnesota/A01350085/2013 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI406500	A/swine/SouthDakota/A01267922/2012 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI399506	A/swine/Minnesota/A01240292/2011 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI399398	A/swine/Minnesota/A01301275/2012 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI390856	A/swine/Iowa/A01203352/2012 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI383904	A/swine/South Dakota/11/2012 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI383781	A/swine/Iowa/A01203577/2012 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI383532	A/swine/Iowa/A01203481/2012 (A/H1N1) segment 6 (NA)	2477.5	0.000000e+00	1387/1410 (98%)
EPI620627	A/swine/Iowa/A02076598/2015 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1387/1411 (98%)
EPI573426	A/swine/Missouri/A01567015/2014 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI558849	A/swine/Iowa/A01477717/2014 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI545395	A/swine/Iowa/A01476323/2014 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI440786	A/swine/Minnesota/A01349018/2013 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI439852	A/swine/Mississippi/A01432467/2013 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI407033	A/swine/Minnesota/A01279114/2012 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI406477	A/swine/SouthDakota/A01267781/2012 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI399428	A/swine/Minnesota/A01301432/2012 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI399095	A/swine/Iowa/A01327884/2012 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI391435	A/swine/Iowa/A01203212/2012 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI391206	A/swine/Illinois/A01202780/2011 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI390891	A/swine/Iowa/A01203440/2012 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI390862	A/swine/Iowa/A01203395/2012 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI381431	A/swine/South Dakota/8/2012 (A/H1N1) segment 6 (NA)	2471.9	0.000000e+00	1386/1410 (98%)
EPI600363	A/swine/Iowa/A01476996/2014 (A/H1N1) segment 6 (NA)	2466.4	0.000000e+00	1385/1410 (98%)
EPI573456	A/swine/Iowa/A01478359/2014 (A/H1N1) segment 6 (NA)	2466.4	0.000000e+00	1386/1411 (98%)
EPI499703	A/swine/Iowa/A01409121/2013 (A/H1N1) segment 6 (NA)	2466.4	0.000000e+00	1385/1410 (98%)
EPI440783	A/swine/Iowa/A01280963/2013 (A/H1N1) segment 6 (NA)	2466.4	0.000000e+00	1385/1410 (98%)

niman · September 2, 2015

Segment-ID	Name	Score	E-Value	Identity
EPI623634	A/swine/Iowa/A02077588/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI621554	A/swine/Nebraska/A01822363/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI621551	A/swine/Nebraska/A01822370/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI620721	A/swine/Kansas/A01377518/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI620720	A/swine/Kansas/A01377485/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI615097	A/swine/Kansas/A01377531/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI612737	A/swine/South Dakota/A01847802/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI612551	A/swine/South Dakota/A01471016/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI590765	A/swine/Nebraska/A01489937/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI590747	A/swine/Nebraska/A01847039/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI590512	A/swine/Nebraska/A01489936/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI590509	A/swine/Nebraska/A01847041/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI584881	A/swine/Nebraska/A01489614/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI584839	A/swine/Nebraska/A01489603/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI584774	A/swine/Nebraska/A01840928/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI584765	A/swine/Nebraska/A01840930/2015 (A/H1N1) segment 7 (MP)	1814.5	0.000000e+00	982/982 (100%)
EPI641554	A/swine/Nebraska/A01822990/2015 (A/H1N1) segment 7 (MP)	1809.0	0.000000e+00	981/982 (99%)
EPI621560	A/swine/Nebraska/A01822366/2015 (A/H1N1) segment 7 (MP)	1809.0	0.000000e+00	981/982 (99%)
EPI615100	A/swine/Kansas/A01377560/2015 (A/H1N1) segment 7 (MP)	1803.5	0.000000e+00	980/982 (99%)
EPI510251	A/swine/Iowa/A01480170/2014 (A/H1N1) segment 7 (MP)	1792.4	0.000000e+00	978/982 (99%)
EPI508857	A/swine/Iowa/A01410104/2014 (A/H1N1) segment 7 (MP)	1792.4	0.000000e+00	978/982 (99%)
EPI641425	A/swine/Minnesota/A01822905/2015 (A/H1N1) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI623607	A/swine/Minnesota/A01471412/2015 (A/H1N1) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI612715	A/swine/Minnesota/A01471032/2015 (A/H1N1) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI612545	A/swine/South Dakota/A01470998/2015 (A/H1N1) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI612542	A/swine/Minnesota/A01470872/2015 (A/H1N1) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI597687	A/swine/Minnesota/A01566469/2014 (A/H1N1) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI548274	A/swine/Iowa/A01478049/2014 (A/H1N1) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI548249	A/swine/Minnesota/A01476503/2014 (A/H1N1) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI546875	A/swine/Iowa/A01502541/2014 (A/H1N1) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI484439	A/swine/Iowa/A01364403/2013 (A/H1N1) segment 7 (MP)	1786.8	0.000000e+00	977/982 (99%)
EPI615349	A/swine/Minnesota/A01471082/2015 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI590673	A/swine/Minnesota/A02076045/2015 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI586100	A/swine/Minnesota/A01489545/2015 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI586085	A/swine/Minnesota/A01489544/2015 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI568719	A/swine/Iowa/A01478359/2014 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI559508	A/swine/Iowa/A01476573/2014 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI550304	A/swine/Iowa/A01410969/2014 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI467627	A/swine/Minnesota/A01432889/2013 (A/H1N2) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI463701	A/swine/Iowa/A01432780/2013 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI416877	A/swine/Iowa/A01432233/2012 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI414151	A/swine/Iowa/A01432105/2012 (A/H1N2) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI408359	A/swine/South Dakota/A01267825/2012 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI406519	A/swine/Texas/A01432097/2012 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI399397	A/swine/Minnesota/A01301275/2012 (A/H1N1) segment 7 (MP)	1781.3	0.000000e+00	976/982 (99%)
EPI638965	A/Iowa/39/2015 (A/H1N1) segment 7 (MP)	1779.4	0.000000e+00	967/969 (99%)
EPI620708	A/swine/South Dakota/A01470837/2015 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI620519	A/swine/Minnesota/A02076858/2015 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI590675	A/swine/Minnesota/A01470721/2015 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI568696	A/swine/Iowa/A01469493/2015 (A/H1N2) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI558873	A/swine/Illinois/A01477750/2014 (A/H0) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI530342	A/swine/Minnesota/A01480795/2014 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI510254	A/swine/Iowa/A01480171/2014 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI506613	A/swine/Minnesota/A01490569/2013 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI504926	A/swine/Minnesota/A01366382/2013 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI489718	A/swine/Minnesota/A01394048/2013 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI487995	A/swine/Iowa/A01290613/2013 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI487201	A/swine/Iowa/A01290542/2013 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI467622	A/swine/Iowa/A01432819/2013 (A/H1N2) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI467610	A/swine/Iowa/A01432854/2013 (A/H1N2) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI439851	A/swine/Mississippi/A01432467/2013 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI408327	A/swine/Minnesota/A01244318/2012 (H1N2) (A/H1N2) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI406653	A/swine/Iowa/A01203944/2012 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI406556	A/swine/Iowa/A01203953/2012 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI406531	A/swine/Iowa/A01432085/2012 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI399505	A/swine/Minnesota/A01240292/2011 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI391455	A/swine/Iowa/A01203116/2012 (A/H1N1) segment 7 (MP)	1775.8	0.000000e+00	975/982 (99%)
EPI399103	A/swine/Iowa/A01328941/2012 (A/H1N1) segment 7 (MP)	1773.9	0.000000e+00	974/981 (99%)
EPI615096	A/swine/Minnesota/A01847958/2015 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI600421	A/swine/Iowa/A01476905/2014 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI558894	A/swine/Minnesota/A01566468/2014 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI528484	A/swine/Ohio/13TOSU0735/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI504935	A/swine/Minnesota/A01366468/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI504917	A/swine/Iowa/A01366350/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI504911	A/swine/South Dakota/SJ1319788/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI472526	A/swine/South Dakota/A01364180/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI464493	A/swine/South Dakota/A01351105/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI463725	A/swine/Iowa/A01432785/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI459452	A/swine/Minnesota/A01350085/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI446727	A/swine/Nebraska/A01349435/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI441646	A/swine/Minnesota/A01445818/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI441160	A/swine/California/A00968789/2013 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI439893	A/swine/Wyoming/A01445305/2013 (A/H3N2) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI416871	A/swine/Colorado/A01432240/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI414157	A/swine/Iowa/A01432141/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI414058	A/swine/Iowa/A01277915/2012 (A/H3N2) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI408303	A/swine/Minnesota/A01277996/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI406641	A/swine/Iowa/A01432034/2012 (A/H1N2) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI406502	A/swine/SouthDakota/A01267928/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI406496	A/swine/SouthDakota/A01267921/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI406476	A/swine/SouthDakota/A01267781/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI401163	A/swine/Minnesota/A01270515/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI401142	A/swine/Minnesota/A01270516/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI401139	A/swine/Minnesota/A01270667/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI399427	A/swine/Minnesota/A01301432/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI399403	A/swine/Minnesota/A01300441/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI390909	A/swine/Iowa/A01203441/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI390880	A/swine/Iowa/A01203371/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI390879	A/swine/Iowa/A01203352/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)
EPI383903	A/swine/South Dakota/11/2012 (A/H1N1) segment 7 (MP)	1770.2	0.000000e+00	974/982 (99%)

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2015 Iowa Swine Match To Human H1N1v Case

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