CEDVI has released partial Zika sequences from Portugal travelers returning from Brazil.

LOCUS       KU752545                 205 bp    RNA     linear   VRL 02-MAY-2016
DEFINITION  Zika virus isolate PoHuZV472846 nonstructural protein 5 gene,
            partial cds.
ACCESSION   KU752545
VERSION     KU752545.1  GI:1002634696
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 205)
  AUTHORS   Ze-Ze,L., Prata,M.B., Teixeira,T., Marques,N., Mondragao,A.,
            Fernandes,R., Saraiva da Cunha,J. and Alves,M.J.
  TITLE     Zika virus infections imported from Brazil to Portugal, 2015
  JOURNAL   IDCases 4, 46-49 (2016)
REFERENCE   2  (bases 1 to 205)
  AUTHORS   Ze-Ze,L., Prata,M.B., Marques,N., Saraiva da Cunha,J. and
            Alves,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-FEB-2016) Center for Vectors and Infectious Diseases
            Research (CEVDI), National Health Institute Doutor Ricardo Jorge,
            IP (INSA), Avenida Liberdade 5, Aguas de Moura 2965-575, Portugal
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: BioEdit v. 7.0.1
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="PoHuZV472846"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Portugal"
                     /collection_date="Dec-2015"
                     /note="imported from Brazil"
     CDS             <1..>205
                     /note="NS5"
                     /codon_start=1
                     /product="nonstructural protein 5"
                     /protein_id="AMN14622.1"
                     /db_xref="GI:1002634697"
                     /translation="WLGARFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEE
                     MSRIPGGRMYADDTAGWDTRISRF"
ORIGIN      
        1 tggctagggg ctagatttct agagttcgaa gcccttggat tcttgaacga ggatcactgg
       61 atgggaagag agaactcagg aggtggtgtt gaagggctgg gattacaaag actcggatat
      121 gtcctagaag agatgagtcg cataccagga ggaaggatgt atgcagatga cactgctggc
      181 tgggacaccc gcatcagcag gtttg

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU752545.1|	Zika virus isolate PoHuZV472846 nonstructural protein 5 gene, partial cds	370	370	100%	4e-99	100%	KU752545.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	365	365	100%	2e-97	99%	KX253996.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	365	365	100%	2e-97	99%	KX197192.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KX185891.1
Select seq gb|KU752544.1|	Zika virus isolate PoHuZV469196 nonstructural protein 5 gene, partial cds	365	365	100%	2e-97	99%	KU752544.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	365	365	100%	2e-97	99%	KX101064.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	365	365	100%	2e-97	99%	KX101060.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	365	365	100%	2e-97	99%	KX117076.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	365	365	100%	2e-97	99%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	365	365	100%	2e-97	99%	KX059013.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	365	365	100%	2e-97	99%	KX051563.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	365	365	100%	2e-97	99%	KU509998.3
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU963796.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	365	365	100%	2e-97	99%	KU940228.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	365	365	100%	2e-97	99%	KU940227.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	365	365	100%	2e-97	99%	KU940224.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU955589.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	365	365	100%	2e-97	99%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	365	365	100%	2e-97	99%	KU926309.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU866423.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	365	365	100%	2e-97	99%	KU820899.2
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU729217.2
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU729218.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	365	365	100%	2e-97	99%	KU744693.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	365	365	100%	2e-97	99%	KU497555.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU647676.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	365	365	100%	2e-97	99%	KU321639.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	365	365	100%	2e-97	99%	KM078970.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	365	365	100%	2e-97	99%	KM078961.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	365	365	100%	2e-97	99%	KM078936.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	365	365	100%	2e-97	99%	KM078933.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	365	365	100%	2e-97	99%	KM078930.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	365	365	100%	2e-97	99%	KM078929.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	365	365	100%	2e-97	99%	KF993678.1
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KJ776791.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	363	363	100%	6e-97	99%	KM078971.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	361	361	100%	2e-96	99%	KX262887.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	361	361	100%	2e-96	99%	KX247646.1
Select seq gb|KU820897.2|	Zika virus isolate FLR polyprotein gene, complete cds	361	361	100%	2e-96	99%	KU820897.2
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	361	361	100%	2e-96	99%	KX198135.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	361	361	100%	2e-96	99%	KX156776.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	361	361	100%	2e-96	99%	KX156775.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	361	361	100%	2e-96	99%	KX156774.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	361	361	100%	2e-96	99%	KX087102.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	361	361	100%	2e-96	99%	KU991811.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	361	361	100%	2e-96	99%	KU870645.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	361	361	100%	2e-96	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	361	361	100%	2e-96	99%	KU853012.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	361	361	100%	2e-96	99%	KU179098.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	361	361	100%	2e-96	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	361	361	99%	2e-96	99%	KU527068.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	361	361	100%	2e-96	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	361	361	100%	2e-96	99%	KU501216.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	361	361	100%	2e-96	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	361	361	100%	2e-96	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	361	361	100%	2e-96	99%	KU365777.1
Select seq gb|KX101067.1|	Zika virus isolate Bahia12, partial genome	360	360	98%	8e-96	99%	KX101067.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	356	356	100%	9e-95	99%	KX247632.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	356	356	100%	9e-95	99%	KX087101.2
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	356	356	100%	9e-95	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	356	356	100%	9e-95	99%	KU922923.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	356	356	100%	9e-95	99%	KU820898.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	356	356	100%	9e-95	99%	KU681081.3
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	356	356	100%	9e-95	99%	KU501215.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	356	356	100%	9e-95	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	356	356	100%	9e-95	99%	KU312312.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	352	352	100%	1e-93	98%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	352	352	100%	1e-93	98%	KU955590.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	352	352	100%	1e-93	98%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	352	352	100%	1e-93	98%	KU761564.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	347	347	100%	5e-92	98%	KU937936.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	347	347	100%	5e-92	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	347	347	100%	5e-92	98%	JN860885.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	343	343	100%	6e-91	97%	EU545988.1
Select seq gb|KF258813.1|	Zika virus isolate Java non-structural protein 5 mRNA, partial cds	340	340	98%	7e-90	98%	KF258813.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	338	338	100%	2e-89	97%	KU681082.3
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	322	322	88%	2e-84	99%	KU556802.1
Select seq gb|KU232300.1|	Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds	316	316	86%	8e-83	99%	KU232300.1
Select seq gb|KU232297.1|	Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds	316	316	86%	8e-83	99%	KU232297.1
Select seq gb|KU232292.1|	Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds	316	316	86%	8e-83	99%	KU232292.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	316	316	100%	8e-83	94%	HQ234499.1
Select seq gb|KU232294.1|	Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds	315	315	86%	3e-82	99%	KU232294.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	313	313	86%	1e-81	99%	KU985087.1
Select seq gb|KU232293.1|	Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds	309	309	84%	1e-80	99%	KU232293.1
Select seq gb|KU232290.1|	Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds	309	309	84%	1e-80	99%	KU232290.1
Select seq gb|KU232298.1|	Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds	307	307	84%	4e-80	99%	KU232298.1
Select seq gb|KU232296.1|	Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds	304	304	83%	5e-79	99%	KU232296.1
Select seq gb|KU232295.1|	Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds	300	300	82%	6e-78	99%	KU232295.1
Select seq gb|KU232291.1|	Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds	295	295	80%	3e-76	99%	KU232291.1
Select seq gb|KU232289.1|	Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds	293	293	80%	9e-76	99%	KU232289.1
Select seq gb|KU232288.1|	Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds	293	293	80%	9e-76	99%	KU232288.1
Select seq gb|KU232299.1|	Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds	291	291	80%	3e-75	99%	KU232299.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	291	291	80%	3e-75	99%	KJ873160.1
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	248	248	100%	3e-62	87%	KF383117.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	248	248	100%	3e-62	87%	KF383116.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	248	248	100%	3e-62	87%	DQ859059.1
Select seq gb|KX198134.1|	Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome	244	244	100%	4e-61	86%	KX198134.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	244	244	100%	4e-61	86%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	244	244	100%	4e-61	86%	KU955592.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	244	244	100%	4e-61	86%	KU955591.1

Sequence map update

https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU

 

LOCUS       KU752544                 205 bp    RNA     linear   VRL 02-MAY-2016
DEFINITION  Zika virus isolate PoHuZV469196 nonstructural protein 5 gene,
            partial cds.
ACCESSION   KU752544
VERSION     KU752544.1  GI:1002634694
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 205)
  AUTHORS   Ze-Ze,L., Prata,M.B., Teixeira,T., Marques,N., Mondragao,A.,
            Fernandes,R., Saraiva da Cunha,J. and Alves,M.J.
  TITLE     Zika virus infections imported from Brazil to Portugal, 2015
  JOURNAL   IDCases 4, 46-49 (2016)
REFERENCE   2  (bases 1 to 205)
  AUTHORS   Ze-Ze,L., Prata,M.B., Marques,N., Saraiva da Cunha,J. and
            Alves,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-FEB-2016) Center for Vectors and Infectious Diseases
            Research (CEVDI), National Health Institute Doutor Ricardo Jorge,
            IP (INSA), Avenida Liberdade 5, Aguas de Moura 2965-575, Portugal
COMMENT     ##Assembly-Data-START##
            Assembly Method       :: BioEdit v. 7.0.1
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..205
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="PoHuZV469196"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Portugal"
                     /collection_date="Nov-2015"
                     /note="imported from Brazil"

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	370	370	100%	4e-99	100%	KX253996.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	370	370	100%	4e-99	100%	KX197192.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	370	370	100%	4e-99	100%	KX185891.1
Select seq gb|KU752544.1|	Zika virus isolate PoHuZV469196 nonstructural protein 5 gene, partial cds	370	370	100%	4e-99	100%	KU752544.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	370	370	100%	4e-99	100%	KX101064.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	370	370	100%	4e-99	100%	KX101060.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	370	370	100%	4e-99	100%	KX117076.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	370	370	100%	4e-99	100%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	370	370	100%	4e-99	100%	KX059013.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	370	370	100%	4e-99	100%	KX051563.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	370	370	100%	4e-99	100%	KU509998.3
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	370	370	100%	4e-99	100%	KU963796.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	370	370	100%	4e-99	100%	KU940228.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	370	370	100%	4e-99	100%	KU940227.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	370	370	100%	4e-99	100%	KU940224.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	370	370	100%	4e-99	100%	KU955589.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	370	370	100%	4e-99	100%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	370	370	100%	4e-99	100%	KU926309.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	370	370	100%	4e-99	100%	KU866423.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	370	370	100%	4e-99	100%	KU820899.2
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	370	370	100%	4e-99	100%	KU729217.2
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	370	370	100%	4e-99	100%	KU729218.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	370	370	100%	4e-99	100%	KU744693.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	370	370	100%	4e-99	100%	KU497555.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	370	370	100%	4e-99	100%	KU647676.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	370	370	100%	4e-99	100%	KU321639.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	370	370	100%	4e-99	100%	KM078970.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	370	370	100%	4e-99	100%	KM078961.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	370	370	100%	4e-99	100%	KM078936.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	370	370	100%	4e-99	100%	KM078933.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	370	370	100%	4e-99	100%	KM078930.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	370	370	100%	4e-99	100%	KM078929.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	370	370	100%	4e-99	100%	KF993678.1
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	370	370	100%	4e-99	100%	KJ776791.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	367	367	99%	5e-98	100%	KU527068.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	367	367	100%	5e-98	99%	KM078971.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	365	365	100%	2e-97	99%	KX262887.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	365	365	100%	2e-97	99%	KX247646.1
Select seq gb|KU820897.2|	Zika virus isolate FLR polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU820897.2
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	365	365	100%	2e-97	99%	KX198135.1
Select seq gb|KU752545.1|	Zika virus isolate PoHuZV472846 nonstructural protein 5 gene, partial cds	365	365	100%	2e-97	99%	KU752545.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	365	365	100%	2e-97	99%	KX156776.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	365	365	100%	2e-97	99%	KX156775.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	365	365	100%	2e-97	99%	KX156774.1
Select seq gb|KX101067.1|	Zika virus isolate Bahia12, partial genome	365	365	98%	2e-97	100%	KX101067.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	365	365	100%	2e-97	99%	KX087102.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU991811.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	365	365	100%	2e-97	99%	KU870645.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	365	365	100%	2e-97	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	365	365	100%	2e-97	99%	KU853012.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	365	365	100%	2e-97	99%	KU179098.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	365	365	100%	2e-97	99%	KU707826.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU501216.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	365	365	100%	2e-97	99%	KU365777.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	361	361	100%	2e-96	99%	KX247632.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	361	361	100%	2e-96	99%	KX087101.2
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	361	361	100%	2e-96	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	361	361	100%	2e-96	99%	KU922923.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	361	361	100%	2e-96	99%	KU820898.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	361	361	100%	2e-96	99%	KU681081.3
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	361	361	100%	2e-96	99%	KU501215.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	361	361	100%	2e-96	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	361	361	100%	2e-96	99%	KU312312.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	356	356	100%	9e-95	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	356	356	100%	9e-95	99%	KU955590.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	356	356	100%	9e-95	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	356	356	100%	9e-95	99%	KU761564.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	352	352	100%	1e-93	98%	KU937936.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	352	352	100%	1e-93	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	352	352	100%	1e-93	98%	JN860885.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	347	347	100%	5e-92	98%	EU545988.1
Select seq gb|KF258813.1|	Zika virus isolate Java non-structural protein 5 mRNA, partial cds	345	345	98%	2e-91	98%	KF258813.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	343	343	100%	6e-91	97%	KU681082.3
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	327	327	88%	4e-86	100%	KU556802.1
Select seq gb|KU232300.1|	Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds	322	322	86%	2e-84	100%	KU232300.1
Select seq gb|KU232297.1|	Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds	322	322	86%	2e-84	100%	KU232297.1
Select seq gb|KU232292.1|	Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds	322	322	86%	2e-84	100%	KU232292.1
Select seq gb|KU232294.1|	Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds	320	320	86%	7e-84	100%	KU232294.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	320	320	100%	7e-84	95%	HQ234499.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	316	316	86%	8e-83	99%	KU985087.1
Select seq gb|KU232293.1|	Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds	315	315	84%	3e-82	100%	KU232293.1
Select seq gb|KU232290.1|	Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds	315	315	84%	3e-82	100%	KU232290.1
Select seq gb|KU232298.1|	Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds	313	313	84%	1e-81	100%	KU232298.1
Select seq gb|KU232296.1|	Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds	309	309	83%	1e-80	100%	KU232296.1
Select seq gb|KU232295.1|	Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds	306	306	82%	1e-79	100%	KU232295.1
Select seq gb|KU232289.1|	Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds	298	298	80%	2e-77	100%	KU232289.1
Select seq gb|KU232288.1|	Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds	298	298	80%	2e-77	100%	KU232288.1
Select seq gb|KU232299.1|	Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds	297	297	80%	8e-77	100%	KU232299.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	297	297	80%	8e-77	100%	KJ873160.1
Select seq gb|KU232291.1|	Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds	291	291	80%	3e-75	99%	KU232291.1
Select seq gb|KX198134.1|	Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome	248	248	100%	3e-62	87%	KX198134.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	248	248	100%	3e-62	87%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	248	248	100%	3e-62	87%	KU955592.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	248	248	100%	3e-62	87%	KU955591.1
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	248	248	100%	3e-62	87%	HQ234501.1
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	244	244	100%	4e-61	86%	KF383117.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	244	244	100%	4e-61	86%	KF383116.1

Sequence map update

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