niman Posted May 26, 2016 Report Share Posted May 26, 2016 Central Research Institute of Epidemiology in Moscow has released a partial Zika sequence from a traveler from Dominican Republic collected May 6, 2016. Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 LOCUS KX247638 489 bp RNA linear VRL 17-MAY-2016 DEFINITION Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene, partial cds. ACCESSION KX247638 VERSION KX247638.1 GI:1028727779 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 489) AUTHORS Karan,L.S., Maleev,V.V., Fedorova,M.V., Grigorieva,Y.E., Bulanenko,V.P. and Shipulin,G.A. TITLE Direct Submission JOURNAL Submitted (16-MAY-2016) Central Research Institute of Epidemiology, Novogireevskaya Str, 3a, Moscow 111123, Russia COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..489 /organism="Zika virus" /mol_type="genomic RNA" /isolate="Dominican_Rep-Rus-3-2016" /isolation_source="urine" /host="Homo sapiens" /db_xref="taxon:64320" /country="Russia" /collection_date="09-May-2016" CDS <1..>489 /note="NS2a-NS2b" /codon_start=1 /product="polyprotein" /protein_id="ANF04751.1" /db_xref="GI:1028727780" /translation="LLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMVVPRTDN ITLAILAALTPLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVR LVDPINVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLI VSY" ORIGIN 1 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg 61 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca 121 cgcactgata acatcacctt ggcaatcctg gctgctctga caccactggc ccggggcaca 181 ctgcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctctg 241 aagggaaaag gcagtgtgaa gaagaactta ccatttgtca tggccctggg actaaccgct 301 gtgaggctgg tcgaccccat caacgtggtg ggactgctgt tgctcacaag gagtgggaag 361 cggagctggc cccctagcga agtactcaca gctgttggcc tgatatgcgc attggctgga 421 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt 481 gtcagttac Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome883883100%0.0100%KX253996.1Select seq gb|KX247638.1|Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene, partial cds883883100%0.0100%KX247638.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome883883100%0.0100%KX087101.2Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds883883100%0.0100%KX185891.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome883883100%0.0100%KX117076.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds883883100%0.0100%KU963796.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds883883100%0.0100%KU955589.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome883883100%0.0100%KU926310.1Select seq gb|KU866423.1|Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds883883100%0.0100%KU866423.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome883883100%0.0100%KU820899.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds883883100%0.0100%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome883883100%0.0100%KU707826.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome883883100%0.0100%KU527068.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome883883100%0.0100%KU501215.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds883883100%0.0100%KU365780.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds883883100%0.0100%KU365779.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds883883100%0.0100%KU365777.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds883883100%0.0100%KU312312.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds883883100%0.0100%KJ776791.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome877877100%0.099%KX262887.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds877877100%0.099%KX247632.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome877877100%0.099%KX197192.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome877877100%0.099%KX051563.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome877877100%0.099%KU509998.3Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds877877100%0.099%KU978616.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds877877100%0.099%KU991811.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome877877100%0.099%KU940228.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome877877100%0.099%KU926309.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome877877100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome877877100%0.099%KU853012.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds877877100%0.099%KU729217.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome877877100%0.099%KU744693.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds877877100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds877877100%0.099%KU501216.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds877877100%0.099%KU365778.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome877877100%0.099%KU321639.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds874874100%0.099%KU937936.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome874874100%0.099%KX156776.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome874874100%0.099%KX156775.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome874874100%0.099%KU940224.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome874874100%0.099%KU870645.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds874874100%0.099%KU820898.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds874874100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds874874100%0.099%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome874874100%0.099%KU497555.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome868868100%0.099%KX247646.1Select seq gb|KU820897.2|Zika virus isolate FLR polyprotein gene, complete cds868868100%0.099%KU820897.2Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome868868100%0.099%KX198135.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome868868100%0.099%KX156774.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome868868100%0.099%KX087102.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds868868100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds868868100%0.099%KU955590.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome868868100%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome868868100%0.099%KU922923.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds868868100%0.099%KU647676.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome865865100%0.099%KU681081.3Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds86186199%0.099%KU740199.1Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome847847100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds847847100%0.098%JN860885.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome841841100%0.098%KU681082.3Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds841841100%0.098%KF993678.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds82082093%0.099%KU872850.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome809809100%0.096%KU940227.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds796796100%0.096%EU545988.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds771771100%0.095%HQ234499.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome75575586%0.099%KX101063.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome722722100%0.091%KX101064.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome654654100%0.087%KX101065.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds59259299%2e-16587%KF268950.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds59259299%2e-16587%KF268948.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds58758799%8e-16487%DQ859059.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds58358399%1e-16286%KF268949.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds57857899%4e-16186%KF383115.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds56556599%3e-15786%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence56556599%3e-15786%KF383120.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds56556599%3e-15786%KF383119.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds56556599%3e-15786%KF383118.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds56056099%1e-15585%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome56056099%1e-15585%KU955594.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds56056099%1e-15585%KU720415.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID56056099%1e-15585%LC002520.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds56056099%1e-15585%KF383116.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds56056099%1e-15585%HQ234498.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome56056099%1e-15585%AY632535.2Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds55655699%1e-15485%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds55655699%1e-15485%HQ234500.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome55155199%6e-15385%KX198134.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome55155199%6e-15385%KU955595.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome55155199%6e-15385%KU955592.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome55155199%6e-15385%KU955591.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds55155199%6e-15385%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds53853899%4e-14984%KF383117.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome53375085%2e-14799%KX101061.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome30253861%5e-78100%KX101067.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome27741547%2e-7099%KX101066.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome14728232%2e-3199%KX101062.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome14514516%8e-31100%KX101060.1 Link to comment Share on other sites More sharing options...
niman Posted May 26, 2016 Author Report Share Posted May 26, 2016 Sequence map updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU Link to comment Share on other sites More sharing options...
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