Partial Zika Sequence Moscow ex-Dominican Republic

[niman]

Central Research Institute of Epidemiology in Moscow has released a partial Zika sequence from a traveler from Dominican Republic collected May 6, 2016.

[niman]

LOCUS       KX247638                 489 bp    RNA     linear   VRL 17-MAY-2016
DEFINITION  Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene,
            partial cds.
ACCESSION   KX247638
VERSION     KX247638.1  GI:1028727779
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Karan,L.S., Maleev,V.V., Fedorova,M.V., Grigorieva,Y.E.,
            Bulanenko,V.P. and Shipulin,G.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-MAY-2016) Central Research Institute of Epidemiology,
            Novogireevskaya Str, 3a, Moscow 111123, Russia
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="Dominican_Rep-Rus-3-2016"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:64320"
                     /country="Russia"
                     /collection_date="09-May-2016"
     CDS             <1..>489
                     /note="NS2a-NS2b"
                     /codon_start=1
                     /product="polyprotein"
                     /protein_id="ANF04751.1"
                     /db_xref="GI:1028727780"
                     /translation="LLALASCLLQTAISALEGDLMVLINGFALAWLAIRAMVVPRTDN
                     ITLAILAALTPLARGTLLVAWRAGLATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVR
                     LVDPINVVGLLLLTRSGKRSWPPSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLI
                     VSY"
ORIGIN      
        1 ctgctggcct tggcctcgtg tcttttgcaa actgcgatct ccgccttgga aggcgacctg
       61 atggttctca tcaatggttt tgctttggcc tggttggcaa tacgagcgat ggttgttcca
      121 cgcactgata acatcacctt ggcaatcctg gctgctctga caccactggc ccggggcaca
      181 ctgcttgtgg cgtggagagc aggccttgct acttgcgggg ggtttatgct cctctctctg
      241 aagggaaaag gcagtgtgaa gaagaactta ccatttgtca tggccctggg actaaccgct
      301 gtgaggctgg tcgaccccat caacgtggtg ggactgctgt tgctcacaag gagtgggaag
      361 cggagctggc cccctagcga agtactcaca gctgttggcc tgatatgcgc attggctgga
      421 gggttcgcca aggcagatat agagatggct gggcccatgg ccgcggtcgg tctgctaatt
      481 gtcagttac

[niman]

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	883	883	100%	0.0	100%	KX253996.1
Select seq gb|KX247638.1|	Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene, partial cds	883	883	100%	0.0	100%	KX247638.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	883	883	100%	0.0	100%	KX087101.2
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	883	883	100%	0.0	100%	KX185891.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	883	883	100%	0.0	100%	KX117076.1
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	883	883	100%	0.0	100%	KU963796.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	883	883	100%	0.0	100%	KU955589.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	883	883	100%	0.0	100%	KU926310.1
Select seq gb|KU866423.1|	Zika virus isolate Zika virus/SZ01/2016 polyprotein gene, complete cds	883	883	100%	0.0	100%	KU866423.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	883	883	100%	0.0	100%	KU820899.2
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	883	883	100%	0.0	100%	KU729218.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	883	883	100%	0.0	100%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	883	883	100%	0.0	100%	KU527068.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	883	883	100%	0.0	100%	KU501215.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	883	883	100%	0.0	100%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	883	883	100%	0.0	100%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	883	883	100%	0.0	100%	KU365777.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	883	883	100%	0.0	100%	KU312312.1
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	883	883	100%	0.0	100%	KJ776791.1
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	877	877	100%	0.0	99%	KX262887.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	877	877	100%	0.0	99%	KX247632.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	877	877	100%	0.0	99%	KX197192.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	877	877	100%	0.0	99%	KX051563.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	877	877	100%	0.0	99%	KU509998.3
Select seq gb|KU978616.1|	Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds	877	877	100%	0.0	99%	KU978616.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU991811.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	877	877	100%	0.0	99%	KU940228.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	877	877	100%	0.0	99%	KU926309.1
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	877	877	100%	0.0	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	877	877	100%	0.0	99%	KU853012.1
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU729217.2
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	877	877	100%	0.0	99%	KU744693.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU501216.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	877	877	100%	0.0	99%	KU365778.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	877	877	100%	0.0	99%	KU321639.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	874	874	100%	0.0	99%	KU937936.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	874	874	100%	0.0	99%	KX156776.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	874	874	100%	0.0	99%	KX156775.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	874	874	100%	0.0	99%	KU940224.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	874	874	100%	0.0	99%	KU870645.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	874	874	100%	0.0	99%	KU820898.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	874	874	100%	0.0	99%	KU740184.2
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	874	874	100%	0.0	99%	KU761564.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	874	874	100%	0.0	99%	KU497555.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	868	868	100%	0.0	99%	KX247646.1
Select seq gb|KU820897.2|	Zika virus isolate FLR polyprotein gene, complete cds	868	868	100%	0.0	99%	KU820897.2
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	868	868	100%	0.0	99%	KX198135.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	868	868	100%	0.0	99%	KX156774.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	868	868	100%	0.0	99%	KX087102.1
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	868	868	100%	0.0	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	868	868	100%	0.0	99%	KU955590.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	868	868	100%	0.0	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	868	868	100%	0.0	99%	KU922923.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	868	868	100%	0.0	99%	KU647676.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	865	865	100%	0.0	99%	KU681081.3
Select seq gb|KU740199.1|	Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds	861	861	99%	0.0	99%	KU740199.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	847	847	100%	0.0	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	847	847	100%	0.0	98%	JN860885.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	841	841	100%	0.0	98%	KU681082.3
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	841	841	100%	0.0	98%	KF993678.1
Select seq gb|KU872850.1|	Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds	820	820	93%	0.0	99%	KU872850.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	809	809	100%	0.0	96%	KU940227.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	796	796	100%	0.0	96%	EU545988.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	771	771	100%	0.0	95%	HQ234499.1
Select seq gb|KX101063.1|	Zika virus isolate Bahia05, partial genome	755	755	86%	0.0	99%	KX101063.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	722	722	100%	0.0	91%	KX101064.1
Select seq gb|KX101065.1|	Zika virus isolate Bahia15, partial genome	654	654	100%	0.0	87%	KX101065.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	592	592	99%	2e-165	87%	KF268950.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	592	592	99%	2e-165	87%	KF268948.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	587	587	99%	8e-164	87%	DQ859059.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	583	583	99%	1e-162	86%	KF268949.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	578	578	99%	4e-161	86%	KF383115.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	565	565	99%	3e-157	86%	KF383121.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	565	565	99%	3e-157	86%	KF383120.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	565	565	99%	3e-157	86%	KF383119.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	565	565	99%	3e-157	86%	KF383118.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	560	560	99%	1e-155	85%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	560	560	99%	1e-155	85%	KU955594.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	560	560	99%	1e-155	85%	KU720415.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	560	560	99%	1e-155	85%	LC002520.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	560	560	99%	1e-155	85%	KF383116.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	560	560	99%	1e-155	85%	HQ234498.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	560	560	99%	1e-155	85%	AY632535.2
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	556	556	99%	1e-154	85%	KU963574.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	556	556	99%	1e-154	85%	HQ234500.1
Select seq gb|KX198134.1|	Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome	551	551	99%	6e-153	85%	KX198134.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	551	551	99%	6e-153	85%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	551	551	99%	6e-153	85%	KU955592.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	551	551	99%	6e-153	85%	KU955591.1
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	551	551	99%	6e-153	85%	HQ234501.1
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	538	538	99%	4e-149	84%	KF383117.1
Select seq gb|KX101061.1|	Zika virus isolate Bahia03, partial genome	533	750	85%	2e-147	99%	KX101061.1
Select seq gb|KX101067.1|	Zika virus isolate Bahia12, partial genome	302	538	61%	5e-78	100%	KX101067.1
Select seq gb|KX101066.1|	Zika virus isolate Bahia01, partial genome	277	415	47%	2e-70	99%	KX101066.1
Select seq gb|KX101062.1|	Zika virus isolate Bahia04, partial genome	147	282	32%	2e-31	99%	KX101062.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	145	145	16%	8e-31	100%	KX101060.1

[niman]

Sequence map update

https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU