niman Posted September 9, 2015 Report Share Posted September 9, 2015 Indonesia NIHRD releases H5N1 H5 & N1 sequences from 2015 cases (40M & 2M). Link to comment Share on other sites More sharing options...
niman Posted September 9, 2015 Author Report Share Posted September 9, 2015 Isolate detailIsolate name: A/Indonesia/NIHRD15028/2015 Isolate ID: EPI_ISL_195732 Passage details/history: e2 Type: A / H5N1 Lineage: Sample information Collection date: 2015-03-25 Host Human Additional host information: Zip code: Patient status: Last vaccinated: In-vivo pathogenicity test: Location: Indonesia / Banten Additional location information: Patient age: 2 Year(s) Gender: Male Outbreak: Treatment: Specimen source: Nasopharyngeal Institute information Originating lab: National Institute of Health Research and Development Sample ID given by the sample provider: 15028 Address: National Institute of Health Research and Development Jl. Percetakan Negara Jakarta, 10560 Indonesia Submitting lab: National Institute of Health Research and Development Sample ID given by the submitting laboratory: 15028 Authors: HA,Pawestri; KD,Puspa; HD,Ikawati; AA,Nugraha; V,Setiawaty Address: National Institute of Health Research and Development Jl. Percetakan Negara No. 29 Jakarta, 10560 Indonesia PublicationPublication In vivo antiviral resistance PhenotypeGenotypeUnspecifiedAntiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional informationAntigenic characterization: Note: Sequence segmentidentifierlengthaccession #INSDCSequence HA A/Indonesia/NIHRD15028/2015 1707 EPI643072 NA A/Indonesia/NIHRD15028/2015 1350 EPI643071 Submitter information Submitter: Pawestri, Hana Apsari Submission Date: 2015-09-09 Last modifier: Pawestri, Hana Apsari Last modified: 2015-09-09 Address: NIHRD-MOH percetakan negara 29 Jakarta, 10560 Indonesia Link to comment Share on other sites More sharing options...
niman Posted September 9, 2015 Author Report Share Posted September 9, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI643072A/Indonesia/NIHRD15028/2015 (A/H5N1) segment 4 (HA)3153.40.000000e+001707/1707 (100%)EPI643069A/Indonesia/NIHRD/15023/2015 (A/H5N1) segment 4 (HA)3153.40.000000e+001707/1707 (100%)EPI492524A/Indonesia/NIHRD13233/2013 (A/H5N1) segment 4 (HA)3053.60.000000e+001689/1707 (98%)EPI547699A/Indonesia/NIHRD14157/2014 (A/H5N1) segment 4 (HA)3037.00.000000e+001686/1707 (98%)EPI509937A/Indonesia/NIHRD13269/2013 (A/H5N1) segment 4 (HA)3025.90.000000e+001684/1707 (98%)EPI537677A/Environment/West Java/Bksi34/2013 (A/H5N1) segment 4 (HA)2953.90.000000e+001671/1707 (97%)EPI442757A/Indonesia/NIHRD12162/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001664/1707 (97%)EPI340810A/chicken/Lampung/BPPVRIII-10-161/2010 (A/H5N1) segment 4 (HA)2887.40.000000e+001659/1707 (97%)EPI324340A/chicken/Indonesia/D10014/2010 (A/H5N1) segment 4 (HA)2881.90.000000e+001658/1707 (97%)EPI487549A/Indonesia/NIHRD11046/2011 (A/H5N1) segment 4 (HA)2865.30.000000e+001655/1707 (96%)EPI356474A/Indonesia/NIHRD11949/2012 (A/H5N1) segment 4 (HA)2865.30.000000e+001655/1707 (96%)EPI356472A/Indonesia/NIHRD11931/2012 (A/H5N1) segment 4 (HA)2865.30.000000e+001655/1707 (96%)EPI340790A/bird/Gunung Kidul/BBVW-52-I/2010 (A/H5N1) segment 4 (HA)2865.30.000000e+001655/1707 (96%)EPI487467A/Indonesia/NIHRD10623/2010 (A/H5N1) segment 4 (HA)2854.20.000000e+001653/1707 (96%)EPI487454A/Indonesia/NIHRD10728/2010 (A/H5N1) segment 4 (HA)2854.20.000000e+001654/1708 (96%)EPI487461A/Indonesia/NIHRD10364/2010 (A/H5N1) segment 4 (HA)2843.10.000000e+001651/1707 (96%)EPI487525A/Indonesia/NIHRD10459/2010 (A/H5N1) segment 4 (HA)2837.60.000000e+001651/1708 (96%)EPI341332A/Indonesia/NIHRD11073/2011(H5N1) (A/H5N1) segment 4 (HA)2832.00.000000e+001650/1708 (96%)EPI340778A/chicken/Temanggung/BBVW-1203d-VIII/2009 (A/H5N1) segment 4 (HA)2815.40.000000e+001646/1707 (96%)EPI340776A/chicken/Temanggung/BBVW-1203b-VIII/2009 (A/H5N1) segment 4 (HA)2815.40.000000e+001646/1707 (96%)EPI164208A/Indonesia/8228/2008 (A/H5N1) segment 4 (HA)2809.90.000000e+001645/1707 (96%)EPI486487A/Indonesia/NIHRD9340/2009 (A/H5N1) segment 4 (HA)2782.20.000000e+001641/1708 (96%)EPI162940A/Indonesia/7261/2008 (A/H5N1) segment 4 (HA)2782.20.000000e+001640/1707 (96%)EPI340774A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 4 (HA)2760.00.000000e+001637/1708 (95%)EPI340768A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 4 (HA)2748.90.000000e+001635/1708 (95%)EPI307911A/chicken/Indonesia/SmiWN18/2009 (A/H5N1) segment 4 (HA)2747.10.000000e+001588/1638 (96%)EPI164763A/Indonesia/7272/2008 (A/H5N1) segment 4 (HA)2739.70.000000e+001627/1699 (95%)EPI55643A/Indonesia/CDC1031RE2/2007 (A/H5N1) segment 4 (HA)2737.90.000000e+001632/1707 (95%)EPI49264A/Indonesia/CDC887/2006 (A/H5N1) segment 4 (HA)2737.90.000000e+001632/1707 (95%)EPI356512A/chicken/Banten/Srg-Fadh/2008 (A/H5N1) segment 4 (HA)2732.30.000000e+001629/1704 (95%)EPI340766A/chicken/Kudus/BBVW-1186-IX/2009 (A/H5N1) segment 4 (HA)2732.30.000000e+001633/1709 (95%)EPI340782A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 4 (HA)2726.80.000000e+001632/1709 (95%)EPI49164A/Indonesia/CDC938E/2006 (A/H5N1) segment 4 (HA)2726.80.000000e+001630/1707 (95%)EPI49145A/Indonesia/CDC938/2006 (A/H5N1) segment 4 (HA)2726.80.000000e+001630/1707 (95%)EPI324615A/tree sparrow/Indonesia/D10013/2010 (A/H5N1) segment 4 (HA)2721.20.000000e+001630/1708 (95%)EPI489378A/Indonesia/NIHRD11454/2011 (A/H5N1) segment 4 (HA)2715.70.000000e+001629/1708 (95%)EPI120008A/Indonesia/TLL012/2006 (A/H5N1) segment 4 (HA)2715.70.000000e+001629/1708 (95%)EPI376537A/Indonesia/5/2005 (A/H5N1) segment 4 (HA)2710.20.000000e+001627/1707 (95%)EPI181390A/Indonesia/5/2005 (A/H5N1) segment 4 (HA)2710.20.000000e+001627/1707 (95%)EPI55776A/Indonesia/CDC1047S/2007 (A/H5N1) segment 4 (HA)2710.20.000000e+001628/1708 (95%)EPI55757A/Indonesia/CDC1047/2007 (A/H5N1) segment 4 (HA)2710.20.000000e+001628/1708 (95%)EPI55738A/Indonesia/CDC1046T/2007 (A/H5N1) segment 4 (HA)2710.20.000000e+001628/1708 (95%)EPI41399A/Indonesia/CDC523/2006 (A/H5N1) segment 4 (HA)2706.50.000000e+001626/1707 (95%)EPI119998A/Indonesia/TLL007/2006 (A/H5N1) segment 4 (HA)2704.60.000000e+001626/1707 (95%)EPI116487A/Indonesia/5/2005 (A/H5N1) segment 4 (HA)2704.60.000000e+001626/1707 (95%)EPI55719A/Indonesia/CDC1046/2007 (A/H5N1) segment 4 (HA)2704.60.000000e+001627/1708 (95%)EPI120002A/Indonesia/TLL009/2006 (A/H5N1) segment 4 (HA)2702.80.000000e+001625/1707 (95%)EPI124067A/Indonesia/5/2005 (A/H5N1) segment 4 (HA)2699.10.000000e+001623/1704 (95%)EPI120006A/Indonesia/TLL011/2006 (A/H5N1) segment 4 (HA)2699.10.000000e+001625/1707 (95%)EPI120004A/Indonesia/TLL010/2006 (A/H5N1) segment 4 (HA)2699.10.000000e+001625/1707 (95%)EPI119994A/Indonesia/TLL005/2006 (A/H5N1) segment 4 (HA)2699.10.000000e+001625/1707 (95%)EPI119990A/Indonesia/TLL003/2006 (A/H5N1) segment 4 (HA)2699.10.000000e+001625/1707 (95%)EPI533457A/chicken/Jambi/184/2011 (A/H5N1) segment 4 (HA)2697.20.000000e+001526/1559 (97%)EPI533452A/chicken/Lampung/153/2011 (A/H5N1) segment 4 (HA)2697.20.000000e+001526/1559 (97%)EPI356559A/Muscovy duck/West Java/Bks3/2007 (A/H5N1) segment 4 (HA)2693.50.000000e+001623/1705 (95%)EPI224608A/Chicken/West Java/TASIKSOL/2006 (A/H5N1) segment 4 (HA)2693.50.000000e+001624/1707 (95%)EPI124421A/Indonesia/542H/2006 (A/H5N1) segment 4 (HA)2693.50.000000e+001624/1707 (95%)EPI124217A/Indonesia/286H/2006 (A/H5N1) segment 4 (HA)2693.50.000000e+001624/1707 (95%)EPI123831A/Chicken/Indonesia/Rejang Lebong1631-22/2006 (A/H5N1) segment 4 (HA)2693.50.000000e+001622/1704 (95%)EPI533456A/chicken/South Sumatra/170/2011 (A/H5N1) segment 4 (HA)2691.70.000000e+001525/1559 (97%)EPI41801A/Indonesia/CDC669/2006 (A/H5N1) segment 4 (HA)2689.80.000000e+001623/1707 (95%)EPI620916A/chicken/WestJava/TASIKO B/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI321749A/peaceful dove/Badung/BBVD-493/2007 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI321408A/chicken/Tabanan/BBVD-339/2007 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI321339A/chicken/Klungkung/BBVD-417/2007 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI321293A/chicken/Bangli/BBVD-387ab/2007 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI224706A/Muscovy Duck/Jakarta/HABWIN/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI124201A/Indonesia/283H/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI123832A/Chicken/Indonesia/Lampung1631-23/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001622/1705 (95%)EPI119996A/Indonesia/TLL006/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI41820A/Indonesia/CDC669P/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI376585A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI376578A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI376571A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI376564A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI376557A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321750A/peaceful dove/Denpasar/BBVD-480/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321364A/chicken/Magelang/BBVW-662-762A/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321341A/chicken/Klungkung/BBVD-484/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321321A/chicken/Flores Timur/BBVD-256/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321318A/chicken/Denpasar/BBVD-494/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321313A/chicken/Denpasar/BBVD-291/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321280A/chicken/Badung/BBVD-175/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI226652A/Chicken/Pakun Baru/BPPV-II/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001620/1704 (95%)EPI226651A/Chicken/Murao Jambi/BBPV-II/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI225050A/chicken/West Java/TASIKSOB/2006 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI120000A/Indonesia/TLL008/2006 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI55624A/Indonesia/CDC1031T2/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001590/1659 (95%)EPI55605A/Indonesia/CDC1031T/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001590/1659 (95%)EPI55586A/Indonesia/CDC1031/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001590/1659 (95%)EPI49202A/Indonesia/CDC835/2006 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI119992A/Indonesia/TLL004/2006 (A/H5N1) segment 4 (HA)2678.80.000000e+001621/1707 (94%)EPI41948A/Indonesia/CDC759/2006 (A/H5N1) segment 4 (HA)2678.80.000000e+001621/1707 (94%)EPI356581A/muscovy duck/Jakarta/Sum106/2006 (A/H5N1) segment 4 (HA)2676.90.000000e+001619/1704 (95%)EPI356515A/chicken/West Java/Smi-Hay/2005 (A/H5N1) segment 4 (HA)2676.90.000000e+001619/1704 (95%)EPI341633A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 4 (HA)2676.90.000000e+001622/1708 (94%)EPI341632A/Indonesia/NIHRD11767/2011(H5N1) (A/H5N1) segment 4 (HA)2676.90.000000e+001622/1708 (94%)EPI321582A/duck/Sleman/BBVW-599-33289/2007 (A/H5N1) segment 4 (HA)2676.90.000000e+001612/1693 (95%)EPI321520A/duck/Bantul/BBVW-358-24381/2007 (A/H5N1) segment 4 (HA)2676.90.000000e+001622/1708 (94%)EPI321409A/chicken/Tabanan/BBVD-461/2007 (A/H5N1) segment 4 (HA)2676.90.000000e+001621/1707 (94%) Link to comment Share on other sites More sharing options...
niman Posted September 9, 2015 Author Report Share Posted September 9, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI643071A/Indonesia/NIHRD15028/2015 (A/H5N1) segment 6 (NA)2494.10.000000e+001350/1350 (100%)EPI643070A/Indonesia/NIHRD/15023/2015 (A/H5N1) segment 6 (NA)2422.10.000000e+001338/1351 (99%)EPI492525A/Indonesia/NIHRD13233/2013 (A/H5N1) segment 6 (NA)2416.50.000000e+001337/1351 (98%)EPI509938A/Indonesia/NIHRD13269/2013 (A/H5N1) segment 6 (NA)2405.50.000000e+001335/1351 (98%)EPI442758A/Indonesia/NIHRD12162/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001326/1351 (98%)EPI487551A/Indonesia/NIHRD11046/2011 (A/H5N1) segment 6 (NA)2255.90.000000e+001308/1351 (96%)EPI340809A/chicken/Lampung/BPPVRIII-10-161/2010 (A/H5N1) segment 6 (NA)2250.30.000000e+001305/1348 (96%)EPI340789A/bird/Gunung Kidul/BBVW-52-I/2010 (A/H5N1) segment 6 (NA)2250.30.000000e+001305/1348 (96%)EPI487527A/Indonesia/NIHRD10459/2010 (A/H5N1) segment 6 (NA)2239.30.000000e+001305/1351 (96%)EPI487456A/Indonesia/NIHRD10728/2010 (A/H5N1) segment 6 (NA)2233.70.000000e+001305/1352 (96%)EPI356475A/Indonesia/NIHRD11949/2012 (A/H5N1) segment 6 (NA)2217.10.000000e+001301/1351 (96%)EPI356473A/Indonesia/NIHRD11931/2012 (A/H5N1) segment 6 (NA)2217.10.000000e+001301/1351 (96%)EPI463649A/Indonesia/NIHRD13157/2013 (A/H5N1) segment 6 (NA)2161.70.000000e+001292/1352 (95%)EPI486489A/Indonesia/NIHRD9340/2009 (A/H5N1) segment 6 (NA)2156.20.000000e+001290/1351 (95%)EPI340777A/chicken/Temanggung/BBVW-1203d-VIII/2009 (A/H5N1) segment 6 (NA)2156.20.000000e+001288/1348 (95%)EPI340775A/chicken/Temanggung/BBVW-1203b-VIII/2009 (A/H5N1) segment 6 (NA)2156.20.000000e+001288/1348 (95%)EPI164210A/Indonesia/8228/2008 (A/H5N1) segment 6 (NA)2154.30.000000e+001279/1335 (95%)EPI340773A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 6 (NA)2150.60.000000e+001287/1348 (95%)EPI531960A/Indonesia/NIHRD14122/2014 (A/H5N1) segment 6 (NA)2145.10.000000e+001290/1353 (95%)EPI340767A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 6 (NA)2139.50.000000e+001285/1348 (95%)EPI55647A/Indonesia/CDC1031RE2/2007 (A/H5N1) segment 6 (NA)2128.50.000000e+001287/1353 (95%)EPI55628A/Indonesia/CDC1031T2/2007 (A/H5N1) segment 6 (NA)2128.50.000000e+001287/1353 (95%)EPI55609A/Indonesia/CDC1031T/2007 (A/H5N1) segment 6 (NA)2128.50.000000e+001287/1353 (95%)EPI55590A/Indonesia/CDC1031/2007 (A/H5N1) segment 6 (NA)2128.50.000000e+001287/1353 (95%)EPI49268A/Indonesia/CDC887/2006 (A/H5N1) segment 6 (NA)2128.50.000000e+001287/1353 (95%)EPI55704A/Indonesia/CDC1032T/2007 (A/H5N1) segment 6 (NA)2122.90.000000e+001286/1353 (95%)EPI55685A/Indonesia/CDC1032N/2007 (A/H5N1) segment 6 (NA)2122.90.000000e+001286/1353 (95%)EPI55666A/Indonesia/CDC1032/2007 (A/H5N1) segment 6 (NA)2122.90.000000e+001286/1353 (95%)EPI49168A/Indonesia/CDC938E/2006 (A/H5N1) segment 6 (NA)2122.90.000000e+001286/1353 (95%)EPI49149A/Indonesia/CDC938/2006 (A/H5N1) segment 6 (NA)2122.90.000000e+001286/1353 (95%)EPI164765A/Indonesia/7272/2008 (A/H5N1) segment 6 (NA)2121.10.000000e+001275/1337 (95%)EPI163112A/Indonesia/7261/2008 (A/H5N1) segment 6 (NA)2121.10.000000e+001275/1337 (95%)EPI443392A/chicken/West Java Tangerang/PTB6/2008 (A/H5N1) segment 6 (NA)2111.80.000000e+001282/1350 (94%)EPI443362A/chicken/Siantar/BPPVRI-231-2/2008 (A/H5N1) segment 6 (NA)2111.80.000000e+001282/1350 (94%)EPI443361A/chicken/Siantar/BPPVRI-231-1/2008 (A/H5N1) segment 6 (NA)2111.80.000000e+001282/1350 (94%)EPI443316A/chicken/Ponorogo/BBVW-197b/2007 (A/H5N1) segment 6 (NA)2111.80.000000e+001283/1351 (94%)EPI340765A/chicken/Kudus/BBVW-1186-IX/2009 (A/H5N1) segment 6 (NA)2111.80.000000e+001280/1348 (94%)EPI41557A/Indonesia/CDC523T/2006 (A/H5N1) segment 6 (NA)2111.80.000000e+001286/1355 (94%)EPI41538A/Indonesia/CDC523E/2006 (A/H5N1) segment 6 (NA)2111.80.000000e+001286/1355 (94%)EPI41403A/Indonesia/CDC523/2006 (A/H5N1) segment 6 (NA)2111.80.000000e+001286/1355 (94%)EPI443404A/pigeon/Bukittinggi/BPPVRII-178-B/2007 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1351 (94%)EPI443389A/chicken/Agam/BPPVRII-694/2007 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1351 (94%)EPI443382A/chicken/Pariaman/BPPVRII-370/2007 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1351 (94%)EPI443373A/chicken/Batam/BPPVRII-188/2007 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1351 (94%)EPI443372A/duck/Padang/BPPVRII-151/2007 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1351 (94%)EPI443371A/swan/Bukittinggi/BPPVRII-178-S/2007 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1351 (94%)EPI443370A/Muscovy duck/Bukittinggi/BPPVRII-178-M/2007 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1351 (94%)EPI443369A/chicken/Padang/BPPVRII-151/2007 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1351 (94%)EPI443368A/chicken/Bukittinggi/BPPVRII-178-C/2007 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1351 (94%)EPI443365A/chicken/Medan/BPPVRI-15/2008 (A/H5N1) segment 6 (NA)2106.30.000000e+001281/1350 (94%)EPI443357A/chicken/Taput/BPPVRI-235/2007 (A/H5N1) segment 6 (NA)2106.30.000000e+001281/1350 (94%)EPI443376A/duck/Kerinci/BPPVRII-262-D/2007 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1351 (94%)EPI443375A/chicken/Kerinci/BPPVRII-262-C/2007 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1351 (94%)EPI443374A/chicken/Solok Selatan/BPPVRII-217/2007 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1351 (94%)EPI443367A/chicken/Pesisir Selatan/BPPVRII-119/2007 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1351 (94%)EPI443352A/chicken/Tanjung Balai/BPPVRI-97/2007 (A/H5N1) segment 6 (NA)2100.80.000000e+001280/1350 (94%)EPI443351A/chicken/Simalungun/BPPVRI-391/2007 (A/H5N1) segment 6 (NA)2100.80.000000e+001280/1350 (94%)EPI340781A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1351 (94%)EPI41851A/Indonesia/CDC699/2006 (A/H5N1) segment 6 (NA)2100.80.000000e+001284/1355 (94%)EPI123850A/Pigeon/Indonesia/Rohkit1631-6/2006 (A/H5N1) segment 6 (NA)2097.10.000000e+001273/1340 (95%)EPI123848A/Chicken/Indonesia/Agam1631-3/2006 (A/H5N1) segment 6 (NA)2097.10.000000e+001273/1340 (95%)EPI123844A/Chicken/Indonesia/Padang1631-1/2006 (A/H5N1) segment 6 (NA)2097.10.000000e+001273/1340 (95%)EPI443378A/chicken/Sawahlunto/BPPVRII-273/2007 (A/H5N1) segment 6 (NA)2095.20.000000e+001280/1351 (94%)EPI443358A/chicken/Karo/BPPVRI-320/2007 (A/H5N1) segment 6 (NA)2095.20.000000e+001279/1350 (94%)EPI123846A/Chicken/Indonesia/Siak1631-2/2006 (A/H5N1) segment 6 (NA)2095.20.000000e+001272/1339 (94%)EPI49244A/Indonesia/CDC836T/2006 (A/H5N1) segment 6 (NA)2095.20.000000e+001283/1355 (94%)EPI49225A/Indonesia/CDC836/2006 (A/H5N1) segment 6 (NA)2095.20.000000e+001283/1355 (94%)EPI41576A/Indonesia/CDC582/2006 (A/H5N1) segment 6 (NA)2095.20.000000e+001283/1355 (94%)EPI123852A/Chicken/Indonesia/Pekenbaru1631-11/2006 (A/H5N1) segment 6 (NA)2091.50.000000e+001272/1340 (94%)EPI443384A/chicken/Bengkalis/BPPVRII-532/2007 (A/H5N1) segment 6 (NA)2089.70.000000e+001279/1351 (94%)EPI443379A/chicken/Payakumbuh/BPPVRII-307/2007 (A/H5N1) segment 6 (NA)2089.70.000000e+001279/1351 (94%)EPI443306A/chicken/West Java/Drd-20/2007 (A/H5N1) segment 6 (NA)2089.70.000000e+001280/1352 (94%)EPI342499A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 6 (NA)2089.70.000000e+001280/1353 (94%)EPI124480A/Indonesia/567H/2006 (A/H5N1) segment 6 (NA)2089.70.000000e+001283/1356 (94%)EPI124276A/Indonesia/292H/2006 (A/H5N1) segment 6 (NA)2089.70.000000e+001282/1355 (94%)EPI55780A/Indonesia/CDC1047S/2007 (A/H5N1) segment 6 (NA)2089.70.000000e+001282/1355 (94%)EPI55761A/Indonesia/CDC1047/2007 (A/H5N1) segment 6 (NA)2089.70.000000e+001282/1355 (94%)EPI55742A/Indonesia/CDC1046T/2007 (A/H5N1) segment 6 (NA)2089.70.000000e+001282/1355 (94%)EPI55723A/Indonesia/CDC1046/2007 (A/H5N1) segment 6 (NA)2089.70.000000e+001282/1355 (94%)EPI41919A/Indonesia/CDC739/2006 (A/H5N1) segment 6 (NA)2089.70.000000e+001282/1355 (94%)EPI41883A/Indonesia/CDC644/2006 (A/H5N1) segment 6 (NA)2089.70.000000e+001283/1356 (94%)EPI41864A/Indonesia/CDC644T/2006 (A/H5N1) segment 6 (NA)2089.70.000000e+001283/1356 (94%)EPI41832A/Indonesia/CDC669P/2006 (A/H5N1) segment 6 (NA)2089.70.000000e+001282/1355 (94%)EPI41813A/Indonesia/CDC669/2006 (A/H5N1) segment 6 (NA)2089.70.000000e+001282/1355 (94%)EPI356567A/Muscovy duck/West Java/Bks3/2007 (A/H5N1) segment 6 (NA)2087.80.000000e+001261/1325 (95%)EPI342500A/Indonesia/NIHRD11767/2011(H5N1) (A/H5N1) segment 6 (NA)2086.00.000000e+001279/1353 (94%)EPI443387A/chicken/Siak/BPPVRII-635/2007 (A/H5N1) segment 6 (NA)2084.10.000000e+001277/1350 (94%)EPI443385A/chicken/Kuantan Singingi/BPPVRII-620/2007 (A/H5N1) segment 6 (NA)2084.10.000000e+001277/1350 (94%)EPI443381A/chicken/Tanah Datar/BPPVRII-365/2007 (A/H5N1) segment 6 (NA)2084.10.000000e+001278/1351 (94%)EPI443377A/chicken/Padang Panjang/BPPVRII-272/2007 (A/H5N1) segment 6 (NA)2084.10.000000e+001277/1350 (94%)EPI443359A/chicken/Aceh Barat/BPPVRI-327/2007 (A/H5N1) segment 6 (NA)2084.10.000000e+001277/1350 (94%)EPI124426A/Indonesia/542H/2006 (A/H5N1) segment 6 (NA)2084.10.000000e+001281/1355 (94%)EPI124219A/Indonesia/286H/2006 (A/H5N1) segment 6 (NA)2084.10.000000e+001281/1355 (94%)EPI41952A/Indonesia/CDC759/2006 (A/H5N1) segment 6 (NA)2084.10.000000e+001282/1356 (94%)EPI41756A/Indonesia/CDC634T/2006 (A/H5N1) segment 6 (NA)2084.10.000000e+001283/1357 (94%)EPI41737A/Indonesia/CDC634P/2006 (A/H5N1) segment 6 (NA)2084.10.000000e+001283/1357 (94%)EPI41718A/Indonesia/CDC634/2006 (A/H5N1) segment 6 (NA)2084.10.000000e+001283/1357 (94%)EPI620902A/chicken/WestJava/SMI-PAT/2006 (A/H5N1) segment 6 (NA)2078.60.000000e+001280/1355 (94%)EPI443364A/chicken/Deli Serdang/BPPVRI-238-2/2008 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%)EPI443363A/chicken/Deli Serdang/BPPVRI-238-1/2008 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%) Link to comment Share on other sites More sharing options...
niman Posted September 9, 2015 Author Report Share Posted September 9, 2015 Isolate detailIsolate name: A/Indonesia/NIHRD/15023/2015 Isolate ID: EPI_ISL_195731 Passage details/history: e1 Type: A / H5N1 Lineage: Sample information Collection date: 2015-03-24 Host Human Additional host information: Zip code: Patient status: Deceased Last vaccinated: In-vivo pathogenicity test: Location: Indonesia / Banten Additional location information: Patient age: 40 Year(s) Gender: Male Outbreak: Treatment: unknown Specimen source: Oropharyngeal Institute information Originating lab: National Institute of Health Research and Development Sample ID given by the sample provider: 15023 Address: National Institute of Health Research and Development Jl. Percetakan Negara Jakarta, 10560 Indonesia Submitting lab: National Institute of Health Research and Development Sample ID given by the submitting laboratory: 15023 Authors: HA,Pawestri; AA,Nugraha; KD,Puspa; HD,Ikawati; V,Setiawaty Address: National Institute of Health Research and Development Jl. Percetakan Negara 29 Jakarta, 10560 Indonesia PublicationPublication In vivo antiviral resistance PhenotypeGenotypeUnspecifiedAntiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional informationAntigenic characterization: Note: Sequence segmentidentifierlengthaccession #INSDCSequence HA A/Indonesia/NIHRD/15023 1707 EPI643069 NA A/Indonesia/NIHRD/15023 1350 EPI643070 Submitter information Submitter: Pawestri, Hana Apsari Submission Date: 2015-09-09 Last modifier: Pawestri, Hana Apsari Last modified: 2015-09-09 Address: NIHRD-MOH percetakan negara 29 Jakarta, 10560 Indonesia Link to comment Share on other sites More sharing options...
niman Posted September 9, 2015 Author Report Share Posted September 9, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI643072A/Indonesia/NIHRD15028/2015 (A/H5N1) segment 4 (HA)3153.40.000000e+001707/1707 (100%)EPI643069A/Indonesia/NIHRD/15023/2015 (A/H5N1) segment 4 (HA)3153.40.000000e+001707/1707 (100%)EPI492524A/Indonesia/NIHRD13233/2013 (A/H5N1) segment 4 (HA)3053.60.000000e+001689/1707 (98%)EPI547699A/Indonesia/NIHRD14157/2014 (A/H5N1) segment 4 (HA)3037.00.000000e+001686/1707 (98%)EPI509937A/Indonesia/NIHRD13269/2013 (A/H5N1) segment 4 (HA)3025.90.000000e+001684/1707 (98%)EPI537677A/Environment/West Java/Bksi34/2013 (A/H5N1) segment 4 (HA)2953.90.000000e+001671/1707 (97%)EPI442757A/Indonesia/NIHRD12162/2012 (A/H5N1) segment 4 (HA)2915.10.000000e+001664/1707 (97%)EPI340810A/chicken/Lampung/BPPVRIII-10-161/2010 (A/H5N1) segment 4 (HA)2887.40.000000e+001659/1707 (97%)EPI324340A/chicken/Indonesia/D10014/2010 (A/H5N1) segment 4 (HA)2881.90.000000e+001658/1707 (97%)EPI487549A/Indonesia/NIHRD11046/2011 (A/H5N1) segment 4 (HA)2865.30.000000e+001655/1707 (96%)EPI356474A/Indonesia/NIHRD11949/2012 (A/H5N1) segment 4 (HA)2865.30.000000e+001655/1707 (96%)EPI356472A/Indonesia/NIHRD11931/2012 (A/H5N1) segment 4 (HA)2865.30.000000e+001655/1707 (96%)EPI340790A/bird/Gunung Kidul/BBVW-52-I/2010 (A/H5N1) segment 4 (HA)2865.30.000000e+001655/1707 (96%)EPI487467A/Indonesia/NIHRD10623/2010 (A/H5N1) segment 4 (HA)2854.20.000000e+001653/1707 (96%)EPI487454A/Indonesia/NIHRD10728/2010 (A/H5N1) segment 4 (HA)2854.20.000000e+001654/1708 (96%)EPI487461A/Indonesia/NIHRD10364/2010 (A/H5N1) segment 4 (HA)2843.10.000000e+001651/1707 (96%)EPI487525A/Indonesia/NIHRD10459/2010 (A/H5N1) segment 4 (HA)2837.60.000000e+001651/1708 (96%)EPI341332A/Indonesia/NIHRD11073/2011(H5N1) (A/H5N1) segment 4 (HA)2832.00.000000e+001650/1708 (96%)EPI340778A/chicken/Temanggung/BBVW-1203d-VIII/2009 (A/H5N1) segment 4 (HA)2815.40.000000e+001646/1707 (96%)EPI340776A/chicken/Temanggung/BBVW-1203b-VIII/2009 (A/H5N1) segment 4 (HA)2815.40.000000e+001646/1707 (96%)EPI164208A/Indonesia/8228/2008 (A/H5N1) segment 4 (HA)2809.90.000000e+001645/1707 (96%)EPI486487A/Indonesia/NIHRD9340/2009 (A/H5N1) segment 4 (HA)2782.20.000000e+001641/1708 (96%)EPI162940A/Indonesia/7261/2008 (A/H5N1) segment 4 (HA)2782.20.000000e+001640/1707 (96%)EPI340774A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 4 (HA)2760.00.000000e+001637/1708 (95%)EPI340768A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 4 (HA)2748.90.000000e+001635/1708 (95%)EPI307911A/chicken/Indonesia/SmiWN18/2009 (A/H5N1) segment 4 (HA)2747.10.000000e+001588/1638 (96%)EPI164763A/Indonesia/7272/2008 (A/H5N1) segment 4 (HA)2739.70.000000e+001627/1699 (95%)EPI55643A/Indonesia/CDC1031RE2/2007 (A/H5N1) segment 4 (HA)2737.90.000000e+001632/1707 (95%)EPI49264A/Indonesia/CDC887/2006 (A/H5N1) segment 4 (HA)2737.90.000000e+001632/1707 (95%)EPI356512A/chicken/Banten/Srg-Fadh/2008 (A/H5N1) segment 4 (HA)2732.30.000000e+001629/1704 (95%)EPI340766A/chicken/Kudus/BBVW-1186-IX/2009 (A/H5N1) segment 4 (HA)2732.30.000000e+001633/1709 (95%)EPI340782A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 4 (HA)2726.80.000000e+001632/1709 (95%)EPI49164A/Indonesia/CDC938E/2006 (A/H5N1) segment 4 (HA)2726.80.000000e+001630/1707 (95%)EPI49145A/Indonesia/CDC938/2006 (A/H5N1) segment 4 (HA)2726.80.000000e+001630/1707 (95%)EPI324615A/tree sparrow/Indonesia/D10013/2010 (A/H5N1) segment 4 (HA)2721.20.000000e+001630/1708 (95%)EPI489378A/Indonesia/NIHRD11454/2011 (A/H5N1) segment 4 (HA)2715.70.000000e+001629/1708 (95%)EPI120008A/Indonesia/TLL012/2006 (A/H5N1) segment 4 (HA)2715.70.000000e+001629/1708 (95%)EPI376537A/Indonesia/5/2005 (A/H5N1) segment 4 (HA)2710.20.000000e+001627/1707 (95%)EPI181390A/Indonesia/5/2005 (A/H5N1) segment 4 (HA)2710.20.000000e+001627/1707 (95%)EPI55776A/Indonesia/CDC1047S/2007 (A/H5N1) segment 4 (HA)2710.20.000000e+001628/1708 (95%)EPI55757A/Indonesia/CDC1047/2007 (A/H5N1) segment 4 (HA)2710.20.000000e+001628/1708 (95%)EPI55738A/Indonesia/CDC1046T/2007 (A/H5N1) segment 4 (HA)2710.20.000000e+001628/1708 (95%)EPI41399A/Indonesia/CDC523/2006 (A/H5N1) segment 4 (HA)2706.50.000000e+001626/1707 (95%)EPI119998A/Indonesia/TLL007/2006 (A/H5N1) segment 4 (HA)2704.60.000000e+001626/1707 (95%)EPI116487A/Indonesia/5/2005 (A/H5N1) segment 4 (HA)2704.60.000000e+001626/1707 (95%)EPI55719A/Indonesia/CDC1046/2007 (A/H5N1) segment 4 (HA)2704.60.000000e+001627/1708 (95%)EPI120002A/Indonesia/TLL009/2006 (A/H5N1) segment 4 (HA)2702.80.000000e+001625/1707 (95%)EPI124067A/Indonesia/5/2005 (A/H5N1) segment 4 (HA)2699.10.000000e+001623/1704 (95%)EPI120006A/Indonesia/TLL011/2006 (A/H5N1) segment 4 (HA)2699.10.000000e+001625/1707 (95%)EPI120004A/Indonesia/TLL010/2006 (A/H5N1) segment 4 (HA)2699.10.000000e+001625/1707 (95%)EPI119994A/Indonesia/TLL005/2006 (A/H5N1) segment 4 (HA)2699.10.000000e+001625/1707 (95%)EPI119990A/Indonesia/TLL003/2006 (A/H5N1) segment 4 (HA)2699.10.000000e+001625/1707 (95%)EPI533457A/chicken/Jambi/184/2011 (A/H5N1) segment 4 (HA)2697.20.000000e+001526/1559 (97%)EPI533452A/chicken/Lampung/153/2011 (A/H5N1) segment 4 (HA)2697.20.000000e+001526/1559 (97%)EPI356559A/Muscovy duck/West Java/Bks3/2007 (A/H5N1) segment 4 (HA)2693.50.000000e+001623/1705 (95%)EPI224608A/Chicken/West Java/TASIKSOL/2006 (A/H5N1) segment 4 (HA)2693.50.000000e+001624/1707 (95%)EPI124421A/Indonesia/542H/2006 (A/H5N1) segment 4 (HA)2693.50.000000e+001624/1707 (95%)EPI124217A/Indonesia/286H/2006 (A/H5N1) segment 4 (HA)2693.50.000000e+001624/1707 (95%)EPI123831A/Chicken/Indonesia/Rejang Lebong1631-22/2006 (A/H5N1) segment 4 (HA)2693.50.000000e+001622/1704 (95%)EPI533456A/chicken/South Sumatra/170/2011 (A/H5N1) segment 4 (HA)2691.70.000000e+001525/1559 (97%)EPI41801A/Indonesia/CDC669/2006 (A/H5N1) segment 4 (HA)2689.80.000000e+001623/1707 (95%)EPI620916A/chicken/WestJava/TASIKO B/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI321749A/peaceful dove/Badung/BBVD-493/2007 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI321408A/chicken/Tabanan/BBVD-339/2007 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI321339A/chicken/Klungkung/BBVD-417/2007 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI321293A/chicken/Bangli/BBVD-387ab/2007 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI224706A/Muscovy Duck/Jakarta/HABWIN/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI124201A/Indonesia/283H/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI123832A/Chicken/Indonesia/Lampung1631-23/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001622/1705 (95%)EPI119996A/Indonesia/TLL006/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI41820A/Indonesia/CDC669P/2006 (A/H5N1) segment 4 (HA)2688.00.000000e+001623/1707 (95%)EPI376585A/ferret/Indonesia/5-F7/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI376578A/ferret/Indonesia/5-F6/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI376571A/ferret/Indonesia/5-F5/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI376564A/ferret/Indonesia/5-F3/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI376557A/ferret/Indonesia/5-F2/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321750A/peaceful dove/Denpasar/BBVD-480/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321364A/chicken/Magelang/BBVW-662-762A/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321341A/chicken/Klungkung/BBVD-484/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321321A/chicken/Flores Timur/BBVD-256/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321318A/chicken/Denpasar/BBVD-494/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321313A/chicken/Denpasar/BBVD-291/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI321280A/chicken/Badung/BBVD-175/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI226652A/Chicken/Pakun Baru/BPPV-II/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001620/1704 (95%)EPI226651A/Chicken/Murao Jambi/BBPV-II/2005 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI225050A/chicken/West Java/TASIKSOB/2006 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI120000A/Indonesia/TLL008/2006 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI55624A/Indonesia/CDC1031T2/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001590/1659 (95%)EPI55605A/Indonesia/CDC1031T/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001590/1659 (95%)EPI55586A/Indonesia/CDC1031/2007 (A/H5N1) segment 4 (HA)2682.50.000000e+001590/1659 (95%)EPI49202A/Indonesia/CDC835/2006 (A/H5N1) segment 4 (HA)2682.50.000000e+001622/1707 (95%)EPI119992A/Indonesia/TLL004/2006 (A/H5N1) segment 4 (HA)2678.80.000000e+001621/1707 (94%)EPI41948A/Indonesia/CDC759/2006 (A/H5N1) segment 4 (HA)2678.80.000000e+001621/1707 (94%)EPI356581A/muscovy duck/Jakarta/Sum106/2006 (A/H5N1) segment 4 (HA)2676.90.000000e+001619/1704 (95%)EPI356515A/chicken/West Java/Smi-Hay/2005 (A/H5N1) segment 4 (HA)2676.90.000000e+001619/1704 (95%)EPI341633A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 4 (HA)2676.90.000000e+001622/1708 (94%)EPI341632A/Indonesia/NIHRD11767/2011(H5N1) (A/H5N1) segment 4 (HA)2676.90.000000e+001622/1708 (94%)EPI321582A/duck/Sleman/BBVW-599-33289/2007 (A/H5N1) segment 4 (HA)2676.90.000000e+001612/1693 (95%)EPI321520A/duck/Bantul/BBVW-358-24381/2007 (A/H5N1) segment 4 (HA)2676.90.000000e+001622/1708 (94%)EPI321409A/chicken/Tabanan/BBVD-461/2007 (A/H5N1) segment 4 (HA)2676.90.000000e+001621/1707 (94%) Link to comment Share on other sites More sharing options...
niman Posted September 9, 2015 Author Report Share Posted September 9, 2015 DescriptionsAlignSegment-IDNameScoreE-ValueIdentityEPI643070A/Indonesia/NIHRD/15023/2015 (A/H5N1) segment 6 (NA)2494.10.000000e+001350/1350 (100%)EPI643071A/Indonesia/NIHRD15028/2015 (A/H5N1) segment 6 (NA)2422.10.000000e+001338/1351 (99%)EPI492525A/Indonesia/NIHRD13233/2013 (A/H5N1) segment 6 (NA)2388.80.000000e+001331/1350 (98%)EPI509938A/Indonesia/NIHRD13269/2013 (A/H5N1) segment 6 (NA)2377.80.000000e+001329/1350 (98%)EPI442758A/Indonesia/NIHRD12162/2012 (A/H5N1) segment 6 (NA)2327.90.000000e+001320/1350 (97%)EPI487551A/Indonesia/NIHRD11046/2011 (A/H5N1) segment 6 (NA)2228.20.000000e+001303/1351 (96%)EPI340809A/chicken/Lampung/BPPVRIII-10-161/2010 (A/H5N1) segment 6 (NA)2222.60.000000e+001300/1348 (96%)EPI340789A/bird/Gunung Kidul/BBVW-52-I/2010 (A/H5N1) segment 6 (NA)2222.60.000000e+001299/1347 (96%)EPI487456A/Indonesia/NIHRD10728/2010 (A/H5N1) segment 6 (NA)2217.10.000000e+001301/1351 (96%)EPI487527A/Indonesia/NIHRD10459/2010 (A/H5N1) segment 6 (NA)2211.60.000000e+001300/1351 (96%)EPI356475A/Indonesia/NIHRD11949/2012 (A/H5N1) segment 6 (NA)2189.40.000000e+001295/1350 (95%)EPI356473A/Indonesia/NIHRD11931/2012 (A/H5N1) segment 6 (NA)2189.40.000000e+001295/1350 (95%)EPI486489A/Indonesia/NIHRD9340/2009 (A/H5N1) segment 6 (NA)2128.50.000000e+001284/1350 (95%)EPI463649A/Indonesia/NIHRD13157/2013 (A/H5N1) segment 6 (NA)2128.50.000000e+001285/1351 (95%)EPI340777A/chicken/Temanggung/BBVW-1203d-VIII/2009 (A/H5N1) segment 6 (NA)2128.50.000000e+001282/1347 (95%)EPI340775A/chicken/Temanggung/BBVW-1203b-VIII/2009 (A/H5N1) segment 6 (NA)2128.50.000000e+001282/1347 (95%)EPI164210A/Indonesia/8228/2008 (A/H5N1) segment 6 (NA)2126.60.000000e+001273/1334 (95%)EPI340773A/chicken/Tasikmalaya/BBVW-991-VI/2009 (A/H5N1) segment 6 (NA)2122.90.000000e+001281/1347 (95%)EPI340767A/chicken/Kuningan/BBVW-1004-VI/2009 (A/H5N1) segment 6 (NA)2111.80.000000e+001279/1347 (94%)EPI49168A/Indonesia/CDC938E/2006 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1352 (94%)EPI49149A/Indonesia/CDC938/2006 (A/H5N1) segment 6 (NA)2106.30.000000e+001282/1352 (94%)EPI531960A/Indonesia/NIHRD14122/2014 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1352 (94%)EPI55647A/Indonesia/CDC1031RE2/2007 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1352 (94%)EPI55628A/Indonesia/CDC1031T2/2007 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1352 (94%)EPI55609A/Indonesia/CDC1031T/2007 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1352 (94%)EPI55590A/Indonesia/CDC1031/2007 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1352 (94%)EPI49268A/Indonesia/CDC887/2006 (A/H5N1) segment 6 (NA)2100.80.000000e+001281/1352 (94%)EPI55704A/Indonesia/CDC1032T/2007 (A/H5N1) segment 6 (NA)2095.20.000000e+001280/1352 (94%)EPI55685A/Indonesia/CDC1032N/2007 (A/H5N1) segment 6 (NA)2095.20.000000e+001280/1352 (94%)EPI55666A/Indonesia/CDC1032/2007 (A/H5N1) segment 6 (NA)2095.20.000000e+001280/1352 (94%)EPI164765A/Indonesia/7272/2008 (A/H5N1) segment 6 (NA)2093.40.000000e+001269/1336 (94%)EPI163112A/Indonesia/7261/2008 (A/H5N1) segment 6 (NA)2087.80.000000e+001268/1336 (94%)EPI443392A/chicken/West Java Tangerang/PTB6/2008 (A/H5N1) segment 6 (NA)2084.10.000000e+001276/1349 (94%)EPI443362A/chicken/Siantar/BPPVRI-231-2/2008 (A/H5N1) segment 6 (NA)2084.10.000000e+001276/1349 (94%)EPI443361A/chicken/Siantar/BPPVRI-231-1/2008 (A/H5N1) segment 6 (NA)2084.10.000000e+001276/1349 (94%)EPI443316A/chicken/Ponorogo/BBVW-197b/2007 (A/H5N1) segment 6 (NA)2084.10.000000e+001277/1350 (94%)EPI340765A/chicken/Kudus/BBVW-1186-IX/2009 (A/H5N1) segment 6 (NA)2084.10.000000e+001274/1347 (94%)EPI41557A/Indonesia/CDC523T/2006 (A/H5N1) segment 6 (NA)2084.10.000000e+001280/1354 (94%)EPI41538A/Indonesia/CDC523E/2006 (A/H5N1) segment 6 (NA)2084.10.000000e+001280/1354 (94%)EPI41403A/Indonesia/CDC523/2006 (A/H5N1) segment 6 (NA)2084.10.000000e+001280/1354 (94%)EPI443404A/pigeon/Bukittinggi/BPPVRII-178-B/2007 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%)EPI443389A/chicken/Agam/BPPVRII-694/2007 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%)EPI443382A/chicken/Pariaman/BPPVRII-370/2007 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%)EPI443373A/chicken/Batam/BPPVRII-188/2007 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%)EPI443372A/duck/Padang/BPPVRII-151/2007 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%)EPI443371A/swan/Bukittinggi/BPPVRII-178-S/2007 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%)EPI443370A/Muscovy duck/Bukittinggi/BPPVRII-178-M/2007 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%)EPI443369A/chicken/Padang/BPPVRII-151/2007 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%)EPI443368A/chicken/Bukittinggi/BPPVRII-178-C/2007 (A/H5N1) segment 6 (NA)2078.60.000000e+001276/1350 (94%)EPI443365A/chicken/Medan/BPPVRI-15/2008 (A/H5N1) segment 6 (NA)2078.60.000000e+001275/1349 (94%)EPI443357A/chicken/Taput/BPPVRI-235/2007 (A/H5N1) segment 6 (NA)2078.60.000000e+001275/1349 (94%)EPI443376A/duck/Kerinci/BPPVRII-262-D/2007 (A/H5N1) segment 6 (NA)2073.10.000000e+001275/1350 (94%)EPI443375A/chicken/Kerinci/BPPVRII-262-C/2007 (A/H5N1) segment 6 (NA)2073.10.000000e+001275/1350 (94%)EPI443374A/chicken/Solok Selatan/BPPVRII-217/2007 (A/H5N1) segment 6 (NA)2073.10.000000e+001275/1350 (94%)EPI443367A/chicken/Pesisir Selatan/BPPVRII-119/2007 (A/H5N1) segment 6 (NA)2073.10.000000e+001275/1350 (94%)EPI443352A/chicken/Tanjung Balai/BPPVRI-97/2007 (A/H5N1) segment 6 (NA)2073.10.000000e+001274/1349 (94%)EPI443351A/chicken/Simalungun/BPPVRI-391/2007 (A/H5N1) segment 6 (NA)2073.10.000000e+001274/1349 (94%)EPI340781A/chicken/Sleman/BBVW-180-III/2010 (A/H5N1) segment 6 (NA)2073.10.000000e+001275/1350 (94%)EPI41851A/Indonesia/CDC699/2006 (A/H5N1) segment 6 (NA)2073.10.000000e+001278/1354 (94%)EPI123850A/Pigeon/Indonesia/Rohkit1631-6/2006 (A/H5N1) segment 6 (NA)2069.40.000000e+001267/1339 (94%)EPI123848A/Chicken/Indonesia/Agam1631-3/2006 (A/H5N1) segment 6 (NA)2069.40.000000e+001267/1339 (94%)EPI123844A/Chicken/Indonesia/Padang1631-1/2006 (A/H5N1) segment 6 (NA)2069.40.000000e+001267/1339 (94%)EPI443378A/chicken/Sawahlunto/BPPVRII-273/2007 (A/H5N1) segment 6 (NA)2067.50.000000e+001274/1350 (94%)EPI443358A/chicken/Karo/BPPVRI-320/2007 (A/H5N1) segment 6 (NA)2067.50.000000e+001273/1349 (94%)EPI342499A/Indonesia/NIHRD11771/2011(H5N1) (A/H5N1) segment 6 (NA)2067.50.000000e+001275/1352 (94%)EPI123846A/Chicken/Indonesia/Siak1631-2/2006 (A/H5N1) segment 6 (NA)2067.50.000000e+001266/1338 (94%)EPI49244A/Indonesia/CDC836T/2006 (A/H5N1) segment 6 (NA)2067.50.000000e+001277/1354 (94%)EPI49225A/Indonesia/CDC836/2006 (A/H5N1) segment 6 (NA)2067.50.000000e+001277/1354 (94%)EPI41576A/Indonesia/CDC582/2006 (A/H5N1) segment 6 (NA)2067.50.000000e+001277/1354 (94%)EPI342500A/Indonesia/NIHRD11767/2011(H5N1) (A/H5N1) segment 6 (NA)2063.80.000000e+001274/1352 (94%)EPI123852A/Chicken/Indonesia/Pekenbaru1631-11/2006 (A/H5N1) segment 6 (NA)2063.80.000000e+001266/1339 (94%)EPI443384A/chicken/Bengkalis/BPPVRII-532/2007 (A/H5N1) segment 6 (NA)2062.00.000000e+001273/1350 (94%)EPI443379A/chicken/Payakumbuh/BPPVRII-307/2007 (A/H5N1) segment 6 (NA)2062.00.000000e+001273/1350 (94%)EPI443306A/chicken/West Java/Drd-20/2007 (A/H5N1) segment 6 (NA)2062.00.000000e+001274/1351 (94%)EPI124480A/Indonesia/567H/2006 (A/H5N1) segment 6 (NA)2062.00.000000e+001277/1355 (94%)EPI124276A/Indonesia/292H/2006 (A/H5N1) segment 6 (NA)2062.00.000000e+001276/1354 (94%)EPI55780A/Indonesia/CDC1047S/2007 (A/H5N1) segment 6 (NA)2062.00.000000e+001276/1354 (94%)EPI55761A/Indonesia/CDC1047/2007 (A/H5N1) segment 6 (NA)2062.00.000000e+001276/1354 (94%)EPI55742A/Indonesia/CDC1046T/2007 (A/H5N1) segment 6 (NA)2062.00.000000e+001276/1354 (94%)EPI55723A/Indonesia/CDC1046/2007 (A/H5N1) segment 6 (NA)2062.00.000000e+001276/1354 (94%)EPI41919A/Indonesia/CDC739/2006 (A/H5N1) segment 6 (NA)2062.00.000000e+001276/1354 (94%)EPI41883A/Indonesia/CDC644/2006 (A/H5N1) segment 6 (NA)2062.00.000000e+001277/1355 (94%)EPI41864A/Indonesia/CDC644T/2006 (A/H5N1) segment 6 (NA)2062.00.000000e+001277/1355 (94%)EPI41832A/Indonesia/CDC669P/2006 (A/H5N1) segment 6 (NA)2062.00.000000e+001276/1354 (94%)EPI41813A/Indonesia/CDC669/2006 (A/H5N1) segment 6 (NA)2062.00.000000e+001276/1354 (94%)EPI356567A/Muscovy duck/West Java/Bks3/2007 (A/H5N1) segment 6 (NA)2060.10.000000e+001255/1324 (94%)EPI443387A/chicken/Siak/BPPVRII-635/2007 (A/H5N1) segment 6 (NA)2056.40.000000e+001271/1349 (94%)EPI443385A/chicken/Kuantan Singingi/BPPVRII-620/2007 (A/H5N1) segment 6 (NA)2056.40.000000e+001271/1349 (94%)EPI443381A/chicken/Tanah Datar/BPPVRII-365/2007 (A/H5N1) segment 6 (NA)2056.40.000000e+001272/1350 (94%)EPI443377A/chicken/Padang Panjang/BPPVRII-272/2007 (A/H5N1) segment 6 (NA)2056.40.000000e+001271/1349 (94%)EPI443359A/chicken/Aceh Barat/BPPVRI-327/2007 (A/H5N1) segment 6 (NA)2056.40.000000e+001271/1349 (94%)EPI124426A/Indonesia/542H/2006 (A/H5N1) segment 6 (NA)2056.40.000000e+001275/1354 (94%)EPI124219A/Indonesia/286H/2006 (A/H5N1) segment 6 (NA)2056.40.000000e+001275/1354 (94%)EPI41952A/Indonesia/CDC759/2006 (A/H5N1) segment 6 (NA)2056.40.000000e+001276/1355 (94%)EPI41756A/Indonesia/CDC634T/2006 (A/H5N1) segment 6 (NA)2056.40.000000e+001277/1356 (94%)EPI41737A/Indonesia/CDC634P/2006 (A/H5N1) segment 6 (NA)2056.40.000000e+001277/1356 (94%)EPI41718A/Indonesia/CDC634/2006 (A/H5N1) segment 6 (NA)2056.40.000000e+001277/1356 (94%)EPI620902A/chicken/WestJava/SMI-PAT/2006 (A/H5N1) segment 6 (NA)2050.90.000000e+001274/1354 (94%)EPI443364A/chicken/Deli Serdang/BPPVRI-238-2/2008 (A/H5N1) segment 6 (NA)2050.90.000000e+001270/1349 (94%)EPI443363A/chicken/Deli Serdang/BPPVRI-238-1/2008 (A/H5N1) segment 6 (NA)2050.90.000000e+001270/1349 (94%) Link to comment Share on other sites More sharing options...
Recommended Posts
Please sign in to comment
You will be able to leave a comment after signing in
Sign In Now