niman Posted September 9, 2015 Report Share Posted September 9, 2015 Mill Hill has released 2015 Fujian clade 2.3.2 sequences from a chicken in Ghana. Link to comment Share on other sites More sharing options...
niman Posted September 9, 2015 Author Report Share Posted September 9, 2015 Isolate detailIsolate name: A/chicken/Ghana/FJ152511/2015 Isolate ID: EPI_ISL_195791 Passage details/history: E1 Type: A / H5N1 Lineage: Sample information Collection date: 2015 (Month and day unknown) Host Chicken Additional host information: Domestic status: Is vaccinated: Location: Ghana Additional location information: Health status: Specimen source: Strain or commercial product name used for vaccination: Institute information Originating lab: University of Ghana Sample ID given by the sample provider: Address: University of Ghana Noguchi Memorial Institute for Medical Research Off Noguchi Circle - South Legon Accra Ghana Submitting lab: National Institute for Medical Research Sample ID given by the submitting laboratory: Authors: Address: National Institute for Medical Research The Ridgeway, Mill Hill London, NW7 1AA United Kingdom PublicationPublication In vivo antiviral resistance PhenotypeGenotypeUnspecifiedAntiviral resistance tested by experimental procedures Adamantanes: Unknown Oseltamivir: Unknown Zanamivir: Unknown Peramivir: Unknown Other: Unknown Additional informationAntigenic characterization: Note: Sequence segmentidentifierlengthaccession #INSDCSequence HA A/chicken/Ghana/FJ152511/2015 1704 EPI643194 NA A/chicken/Ghana/FJ152511/2015 1350 EPI643195 MP A/chicken/Ghana/FJ152511/2015 982 EPI643196 Submitter information Submitter: Ermetal, Burcu Submission Date: 2015-09-09 Last modifier: Ermetal, Burcu Last modified: 2015-09-09 Address: National Institute for Medical Research The Ridgeway, Mill Hill London, NW7 1AA United Kingdom Link to comment Share on other sites More sharing options...
niman Posted September 9, 2015 Author Report Share Posted September 9, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI632942A/chicken/Ghana/15VIR2588-9/2015 (A/H5N1) segment 4 (HA)3081.30.000000e+001692/1704 (99%)EPI603577A/Quail/Dubai/AR3445-25043/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI603569A/Stone curlew/Dubai/AR3444-25042/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI603561A/Sea Gull/Dubai/AR3443-25041/2014 (A/H5N1) segment 4 (HA)3059.20.000000e+001689/1705 (99%)EPI603553A/Falcon/Dubai/AR3430-2293/2014 (A/H5N1) segment 4 (HA)3053.60.000000e+001688/1705 (99%)EPI632943A/duck/Ivory Coast/15VIR-2742-1/2015 (A/H5N1) segment 4 (HA)3051.80.000000e+001678/1691 (99%)EPI621173A/chicken/Jiangsu/2477/2014 (A/H5N1) segment 4 (HA)3048.10.000000e+001686/1704 (98%)EPI584232A/chicken/Burkina Faso/15VIR1774-35/2015 (A/H5N1) segment 4 (HA)3042.60.000000e+001675/1690 (99%)EPI500771A/Alberta/01/2014 (A/H5N1) segment 4 (HA)3042.60.000000e+001685/1704 (98%)EPI594560A/pelican/Romania/12449/2015 (A/H5N1) segment 4 (HA)3037.00.000000e+001686/1706 (98%)EPI592605A/dalmatian pelican/Bulgaria/4/2015 (A/H5N1) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI592416A/dalmatian pelican/Bulgaria/3/2015 (A/H5N1) segment 4 (HA)3025.90.000000e+001684/1706 (98%)EPI594492A/chicken/Bulgaria/5409/15 (A/H5N1) segment 4 (HA)3022.20.000000e+001682/1704 (98%)EPI594491A/chicken/Bulgaria/5408/15 (A/H5N1) segment 4 (HA)3022.20.000000e+001682/1704 (98%)EPI594490A/chicken/Bulgaria/5407/15 (A/H5N1) segment 4 (HA)3022.20.000000e+001682/1704 (98%)EPI631928A/rook/Sartlan/42/2015 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI631920A/rook/Dovolnoe/50/2015 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI631912A/rook/Chany/32/2015 (A/H5N1) segment 4 (HA)3014.90.000000e+001681/1705 (98%)EPI641671A/chicken/Niger/15VIR2060-6/2015 (A/H5N1) segment 4 (HA)3013.00.000000e+001670/1690 (98%)EPI489677A/tiger/Jiangsu/01/2013 (A/H5N1) segment 4 (HA)3009.30.000000e+001679/1704 (98%)EPI461022A/duck/Vietnam/QB1207/2012 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI425680A/duck/Vietnam/NCVD-1593/2012 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI425624A/duck/Vietnam/NCVD-1930/2012 (A/H5N1) segment 4 (HA)3003.80.000000e+001678/1704 (98%)EPI425160A/duck/Vietnam/NCVD-1937/2012 (A/H5N1) segment 4 (HA)3003.80.000000e+001679/1705 (98%)EPI425176A/chicken/Vietnam/NCVD-1942/2012 (A/H5N1) segment 4 (HA)3000.10.000000e+001676/1702 (98%)EPI559089A/duck/Vietnam/NCVD-KA324/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI559087A/duck/Vietnam/NCVD-KA311/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI559084A/duck/Vietnam/NCVD-KA300/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI545446A/duck/Khanhhoa/CVVI-21/2013 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI545429A/duck/Khanhhoa/CVVI-04/2013 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI545426A/duck/Khanhhoa/CVVI-01/2013 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI425923A/duck/Vietnam/NCVD-1547/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI425312A/duck/Vietnam/NCVD-1904/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI425304A/duck/Vietnam/NCVD-1902/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI425272A/duck/Vietnam/NCVD-1901/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI425152A/duck/Vietnam/NCVD-1935/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI425136A/duck/Vietnam/NCVD-1899/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI425128A/duck/Vietnam/NCVD-1872/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI425112A/duck/Vietnam/NCVD-1943/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI424992A/duck/Vietnam/NCVD-1607/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI424720A/duck/Vietnam/NCVD-1897/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI424712A/duck/Vietnam/NCVD-1896/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI424704A/duck/Vietnam/NCVD-1869/2012 (A/H5N1) segment 4 (HA)2998.20.000000e+001677/1704 (98%)EPI425640A/duck/Vietnam/NCVD-1931/2012 (A/H5N1) segment 4 (HA)2994.50.000000e+001676/1704 (98%)EPI621165A/chicken/Jiangsu/927/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI621163A/chicken/Jiangsu/2540/2014 (A/H0) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI559108A/muscovy duck/Vietnam/NCVD-KA395/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI559081A/duck/Vietnam/NCVD-KA262/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI545448A/duck/Khanhhoa/CVVI-23/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI545445A/duck/Khanhhoa/CVVI-20/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI545440A/duck/Khanhhoa/CVVI-15/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI545437A/chicken/Khanhhoa/CVVI-12/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI545435A/duck/Khanhhoa/CVVI-10/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI545430A/duck/Khanhhoa/CVVI-05/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI545427A/chicken/Khanhhoa/CVVI-02/2013 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI425931A/duck/Vietnam/NCVD-1544/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI425688A/duck/Vietnam/NCVD-1602/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI425672A/duck/Vietnam/NCVD-1905/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI425648A/duck/Vietnam/NCVD-1936/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI425632A/duck/Vietnam/NCVD-1928/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI425024A/duck/Vietnam/NCVD-1884/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001677/1705 (98%)EPI425016A/duck/Vietnam/NCVD-1878/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI424984A/duck/Vietnam/NCVD-1584/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI424728A/duck/Vietnam/NCVD-1898/2012 (A/H5N1) segment 4 (HA)2992.70.000000e+001676/1704 (98%)EPI424736A/chicken/Vietnam/NCVD-1927/2012 (A/H5N1) segment 4 (HA)2989.00.000000e+001675/1704 (98%)EPI567037A/muscovy duck/Quang Ninh/48c1-4-1/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI559090A/duck/Vietnam/NCVD-KA345/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI559088A/muscovy duck/Vietnam/NCVD-KA286/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI559082A/chicken/Vietnam/NCVD-KA275/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI545444A/duck/Khanhhoa/CVVI-19/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI545439A/duck/Khanhhoa/CVVI-14/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI545434A/chicken/Khanhhoa/CVVI-09/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI545433A/duck/Khanhhoa/CVVI-08/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI545432A/duck/Khanhhoa/CVVI-07/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI531373A/hill myna/Heilongjiang/0704/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI461488A/duck/Quanh Ninh/53/2013 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI425939A/duck/Vietnam/NCVD-1875/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI425656A/duck/Vietnam/NCVD-1968/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI425144A/duck/Vietnam/NCVD-1933/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI424744A/duck/Vietnam/NCVD-1932/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI408415A/duck/Vietnam/OIE-2202/2012 (A/H5N1) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI405753A/chicken/Vietnam/OIE-2215/2012 (A/H5N2) segment 4 (HA)2987.20.000000e+001675/1704 (98%)EPI559095A/chicken/Vietnam/NCVD-KA432/2013 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI545442A/duck/Khanhhoa/CVVI-17/2013 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI545441A/duck/Khanhhoa/CVVI-16/2013 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI545428A/duck/Khanhhoa/CVVI-03/2013 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI503718A/Japanese white-eye/Taoyuan/Q454/2012 (A/H5N1) segment 4 (HA)2981.60.000000e+001675/1705 (98%)EPI460948A/muscovy duck/Vietnam/LBM399/2013 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI460940A/muscovy duck/Vietnam/LBM398/2013 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI460932A/muscovy duck/Quanh Ninh/49/2013 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI417807A/duck/Vietnam/OIE-2212/2012 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI417778A/duck/Vietnam/OIE-2211/2012 (A/H5N1) segment 4 (HA)2981.60.000000e+001674/1704 (98%)EPI559091A/chicken/Vietnam/NCVD-KA365/2012 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI545438A/chicken/Khanhhoa/CVVI-13/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI545431A/duck/Khanhhoa/CVVI-06/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI471173A/muscovy duck/Vietnam/LBM436/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI459257A/duck/Quanh Ninh/21/2013 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI438150A/muscovy duck/Vietnam/LBM295/2012 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI438142A/muscovy duck/Vietnam/LBM315/2012 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%)EPI425184A/duck/Vietnam/NCVD-1944/2012 (A/H5N1) segment 4 (HA)2976.10.000000e+001673/1704 (98%) Link to comment Share on other sites More sharing options...
niman Posted September 9, 2015 Author Report Share Posted September 9, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI567305A/chicken/Nigeria/15VIR339-2/2015 (A/H5N1) segment 6 (NA)2466.40.000000e+001345/1350 (99%)EPI623570A/Falcon/Dubai/2506/2014 (A/H5N1) segment 6 (NA)2422.10.000000e+001337/1350 (99%)EPI623562A/Duck/Dubai/2459/2014 (A/H5N1) segment 6 (NA)2422.10.000000e+001337/1350 (99%)EPI603576A/Quail/Dubai/AR3445-25043/2014 (A/H5N1) segment 6 (NA)2422.10.000000e+001337/1350 (99%)EPI603568A/Stone curlew/Dubai/AR3444-25042/2014 (A/H5N1) segment 6 (NA)2422.10.000000e+001337/1350 (99%)EPI603560A/Sea Gull/Dubai/AR3443-25041/2014 (A/H5N1) segment 6 (NA)2422.10.000000e+001337/1350 (99%)EPI603552A/Falcon/Dubai/AR3430-2293/2014 (A/H5N1) segment 6 (NA)2422.10.000000e+001337/1350 (99%)EPI623554A/Hoabara/Dubai/2455.5/2014 (A/H5N1) segment 6 (NA)2416.50.000000e+001336/1350 (98%)EPI621174A/chicken/Jiangsu/2477/2014 (A/H5N1) segment 6 (NA)2411.00.000000e+001335/1350 (98%)EPI500773A/Alberta/01/2014 (A/H5N1) segment 6 (NA)2396.20.000000e+001332/1350 (98%)EPI631929A/rook/Sartlan/42/2015 (A/H5N1) segment 6 (NA)2388.80.000000e+001331/1350 (98%)EPI631921A/rook/Dovolnoe/50/2015 (A/H5N1) segment 6 (NA)2388.80.000000e+001331/1350 (98%)EPI631913A/rook/Chany/32/2015 (A/H5N1) segment 6 (NA)2383.30.000000e+001330/1350 (98%)EPI559149A/muscovy duck/Vietnam/NCVD-KA395/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI425930A/duck/Vietnam/NCVD-1544/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI425687A/duck/Vietnam/NCVD-1602/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI425655A/duck/Vietnam/NCVD-1968/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI425631A/duck/Vietnam/NCVD-1928/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI425623A/duck/Vietnam/NCVD-1930/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI425159A/duck/Vietnam/NCVD-1937/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI424983A/duck/Vietnam/NCVD-1584/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI417809A/duck/Vietnam/OIE-2212/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI417798A/duck/Vietnam/OIE-2236/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI417780A/duck/Vietnam/OIE-2211/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI408417A/duck/Vietnam/OIE-2202/2012 (A/H5N1) segment 6 (NA)2355.60.000000e+001325/1350 (98%)EPI531374A/hill myna/Heilongjiang/0704/2012 (A/H5N1) segment 6 (NA)2350.10.000000e+001324/1350 (98%)EPI503722A/Japanese white-eye/Taoyuan/Q454/2012 (A/H5N1) segment 6 (NA)2350.10.000000e+001324/1350 (98%)EPI461024A/duck/Vietnam/QB1207/2012 (A/H5N1) segment 6 (NA)2350.10.000000e+001324/1350 (98%)EPI460950A/muscovy duck/Vietnam/LBM399/2013 (A/H5N1) segment 6 (NA)2350.10.000000e+001324/1350 (98%)EPI460942A/muscovy duck/Vietnam/LBM398/2013 (A/H5N1) segment 6 (NA)2350.10.000000e+001324/1350 (98%)EPI425922A/duck/Vietnam/NCVD-1547/2012 (A/H5N1) segment 6 (NA)2350.10.000000e+001324/1350 (98%)EPI425311A/duck/Vietnam/NCVD-1904/2012 (A/H5N1) segment 6 (NA)2350.10.000000e+001324/1350 (98%)EPI424991A/duck/Vietnam/NCVD-1607/2012 (A/H5N1) segment 6 (NA)2350.10.000000e+001324/1350 (98%)EPI424743A/duck/Vietnam/NCVD-1932/2012 (A/H5N1) segment 6 (NA)2350.10.000000e+001324/1350 (98%)EPI424735A/chicken/Vietnam/NCVD-1927/2012 (A/H5N1) segment 6 (NA)2346.40.000000e+001323/1350 (98%)EPI425679A/duck/Vietnam/NCVD-1593/2012 (A/H5N1) segment 6 (NA)2344.50.000000e+001323/1350 (98%)EPI425639A/duck/Vietnam/NCVD-1931/2012 (A/H5N1) segment 6 (NA)2344.50.000000e+001323/1350 (98%)EPI425143A/duck/Vietnam/NCVD-1933/2012 (A/H5N1) segment 6 (NA)2344.50.000000e+001323/1350 (98%)EPI424687A/duck/Vietnam/NCVD-1974/2012 (A/H5N1) segment 6 (NA)2344.50.000000e+001323/1350 (98%)EPI424198A/muscovy duck/Vietnam/LBM230/2012 (A/H5N1) segment 6 (NA)2344.50.000000e+001323/1350 (98%)EPI424190A/muscovy duck/Vietnam/LBM229/2012 (A/H5N1) segment 6 (NA)2344.50.000000e+001323/1350 (98%)EPI424182A/muscovy duck/Vietnam/LBM228/2012 (A/H5N1) segment 6 (NA)2344.50.000000e+001323/1350 (98%)EPI424174A/muscovy duck/Vietnam/LBM227/2012 (A/H5N1) segment 6 (NA)2344.50.000000e+001323/1350 (98%)EPI545514A/chicken/Khanhhoa/CVVI-42/2014 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI545512A/chicken/Khanhhoa/CVVI-40/2014 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI545511A/chicken/Khanhhoa/CVVI-39/2014 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI462794A/mynah/Austria-quarantine/13064792-010/13 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI461538A/muscovy duck/Vietnam/LBM344/2013 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI425938A/duck/Vietnam/NCVD-1875/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI425671A/duck/Vietnam/NCVD-1905/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI425647A/duck/Vietnam/NCVD-1936/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI425303A/duck/Vietnam/NCVD-1902/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI425271A/duck/Vietnam/NCVD-1901/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI425135A/duck/Vietnam/NCVD-1899/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI425111A/duck/Vietnam/NCVD-1943/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI425023A/duck/Vietnam/NCVD-1884/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI425015A/duck/Vietnam/NCVD-1878/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI424719A/duck/Vietnam/NCVD-1897/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI424711A/duck/Vietnam/NCVD-1896/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI424703A/duck/Vietnam/NCVD-1869/2012 (A/H5N1) segment 6 (NA)2339.00.000000e+001322/1350 (97%)EPI559153A/chicken/Vietnam/NCVD-KA432/2013 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI545517A/duck/Khanhhoa/CVVI-45/2014 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI545516A/chicken/Khanhhoa/CVVI-44/2014 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI545513A/chicken/Khanhhoa/CVVI-41/2014 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI545506A/duck/Khanhhoa/CVVI-34/2014 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI545501A/duck/Khanhhoa/CVVI-29/2014 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI545498A/duck/Khanhhoa/CVVI-26/2014 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI489679A/tiger/Jiangsu/01/2013 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI462790A/mynah/Austria-quarantine/13063485-025/13 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI425175A/chicken/Vietnam/NCVD-1942/2012 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI424727A/duck/Vietnam/NCVD-1898/2012 (A/H5N1) segment 6 (NA)2333.40.000000e+001321/1350 (97%)EPI462792A/mynah/Austria-quarantine/13063485-026/13 (A/H5N1) segment 6 (NA)2329.70.000000e+001320/1350 (97%)EPI567039A/muscovy duck/Quang Ninh/48c1-4-1/2013 (A/H5N1) segment 6 (NA)2327.90.000000e+001320/1350 (97%)EPI545515A/chicken/Khanhhoa/CVVI-43/2014 (A/H5N1) segment 6 (NA)2327.90.000000e+001320/1350 (97%)EPI545509A/duck/Khanhhoa/CVVI-37/2014 (A/H5N1) segment 6 (NA)2327.90.000000e+001320/1350 (97%)EPI545507A/duck/Khanhhoa/CVVI-35/2014 (A/H5N1) segment 6 (NA)2327.90.000000e+001320/1350 (97%)EPI461490A/duck/Quanh Ninh/53/2013 (A/H5N1) segment 6 (NA)2327.90.000000e+001320/1350 (97%)EPI460934A/muscovy duck/Quanh Ninh/49/2013 (A/H5N1) segment 6 (NA)2327.90.000000e+001320/1350 (97%)EPI438152A/muscovy duck/Vietnam/LBM295/2012 (A/H5N1) segment 6 (NA)2327.90.000000e+001320/1350 (97%)EPI438144A/muscovy duck/Vietnam/LBM315/2012 (A/H5N1) segment 6 (NA)2327.90.000000e+001320/1350 (97%)EPI425183A/duck/Vietnam/NCVD-1944/2012 (A/H5N1) segment 6 (NA)2327.90.000000e+001320/1350 (97%)EPI589837A/duck/Quang Ninh/15c111/2013 (A/H5N1) segment 6 (NA)2322.40.000000e+001319/1350 (97%)EPI589831A/muscovy duck/Quang Ninh/7c121/2013 (A/H5N1) segment 6 (NA)2322.40.000000e+001319/1350 (97%)EPI545502A/duck/Khanhhoa/CVVI-30/2014 (A/H5N1) segment 6 (NA)2322.40.000000e+001319/1350 (97%)EPI545495A/duck/Khanhhoa/CVVI-23/2013 (A/H5N1) segment 6 (NA)2322.40.000000e+001319/1350 (97%)EPI471175A/muscovy duck/Vietnam/LBM436/2013 (A/H5N1) segment 6 (NA)2322.40.000000e+001319/1350 (97%)EPI471133A/muscovy duck/Vietnam/LBM438/2013 (A/H5N1) segment 6 (NA)2322.40.000000e+001319/1350 (97%)EPI459249A/muscovy duck/Quanh Ninh/9/2013 (A/H5N1) segment 6 (NA)2322.40.000000e+001319/1350 (97%)EPI459241A/muscovy duck/Quanh Ninh/6/2013 (A/H5N1) segment 6 (NA)2322.40.000000e+001319/1350 (97%)EPI425151A/duck/Vietnam/NCVD-1935/2012 (A/H5N1) segment 6 (NA)2322.40.000000e+001319/1350 (97%)EPI425127A/duck/Vietnam/NCVD-1872/2012 (A/H5N1) segment 6 (NA)2322.40.000000e+001319/1350 (97%)EPI559141A/duck/Vietnam/NCVD-KA300/2012 (A/H5N1) segment 6 (NA)2316.80.000000e+001302/1326 (98%)EPI545510A/duck/Khanhhoa/CVVI-38/2014 (A/H5N1) segment 6 (NA)2316.80.000000e+001318/1350 (97%)EPI545503A/chicken/Khanhhoa/CVVI-31/2014 (A/H5N1) segment 6 (NA)2316.80.000000e+001318/1350 (97%)EPI545493A/duck/Khanhhoa/CVVI-21/2013 (A/H5N1) segment 6 (NA)2316.80.000000e+001318/1350 (97%)EPI545492A/duck/Khanhhoa/CVVI-20/2013 (A/H5N1) segment 6 (NA)2316.80.000000e+001318/1350 (97%)EPI545475A/duck/Khanhhoa/CVVI-03/2013 (A/H5N1) segment 6 (NA)2316.80.000000e+001318/1350 (97%)EPI515016A/duck/Hunan/749/2011 (A/H0) segment 6 (NA)2316.80.000000e+001318/1350 (97%)EPI515006A/duck/Hunan/747/2011 (A/H0) segment 6 (NA)2316.80.000000e+001318/1350 (97%)EPI545519A/duck/Phuyen/CVVI-47/2014 (A/H5N1) segment 6 (NA)2311.30.000000e+001317/1350 (97%) Link to comment Share on other sites More sharing options...
niman Posted September 9, 2015 Author Report Share Posted September 9, 2015 AlignSegment-IDNameScoreE-ValueIdentityEPI567299A/chicken/Nigeria/15VIR339-2/2015 (A/H5N1) segment 7 (MP)1797.90.000000e+00979/982 (99%)EPI603548A/Falcon/Dubai/AR3430-2293/2014 (A/H5N1) segment 7 (MP)1786.80.000000e+00977/982 (99%)EPI621179A/chicken/Jiangsu/2477/2014 (A/H5N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI500772A/Alberta/01/2014 (A/H5N1) segment 7 (MP)1781.30.000000e+00976/982 (99%)EPI623558A/Duck/Dubai/2459/2014 (A/H5N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI623550A/Hoabara/Dubai/2455.5/2014 (A/H5N1) segment 7 (MP)1775.80.000000e+00975/982 (99%)EPI623566A/Falcon/Dubai/2506/2014 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI603572A/Quail/Dubai/AR3445-25043/2014 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI603564A/Stone curlew/Dubai/AR3444-25042/2014 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI603556A/Sea Gull/Dubai/AR3443-25041/2014 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI461539A/muscovy duck/Vietnam/LBM344/2013 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI461025A/duck/Vietnam/QB1207/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI425926A/duck/Vietnam/NCVD-1544/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI425918A/duck/Vietnam/NCVD-1547/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI425683A/duck/Vietnam/NCVD-1602/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI425675A/duck/Vietnam/NCVD-1593/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI425635A/duck/Vietnam/NCVD-1931/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI425179A/duck/Vietnam/NCVD-1944/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI425171A/chicken/Vietnam/NCVD-1942/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI425147A/duck/Vietnam/NCVD-1935/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI425139A/duck/Vietnam/NCVD-1933/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI425107A/duck/Vietnam/NCVD-1943/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI424987A/duck/Vietnam/NCVD-1607/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI424979A/duck/Vietnam/NCVD-1584/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI424731A/chicken/Vietnam/NCVD-1927/2012 (A/H5N1) segment 7 (MP)1770.20.000000e+00974/982 (99%)EPI631922A/rook/Dovolnoe/50/2015 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI631914A/rook/Chany/32/2015 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI589596A/muscovy duck/Quang Ninh/7c121/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI559174A/chicken/Vietnam/NCVD-KA432/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI559171A/duck/Vietnam/NCVD-KA311/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI559168A/duck/Vietnam/NCVD-KA262/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI559165A/duck/Vietnam/NCVD-KA250/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545542A/duck/Khanhhoa/CVVI-23/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545541A/duck/Khanhhoa/CVVI-22/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545536A/duck/Khanhhoa/CVVI-17/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545532A/chicken/Khanhhoa/CVVI-13/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545527A/duck/Khanhhoa/CVVI-08/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545525A/duck/Khanhhoa/CVVI-06/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545524A/duck/Khanhhoa/CVVI-05/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545523A/duck/Khanhhoa/CVVI-04/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545522A/duck/Khanhhoa/CVVI-03/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545521A/chicken/Khanhhoa/CVVI-02/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI545520A/duck/Khanhhoa/CVVI-01/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI471176A/muscovy duck/Vietnam/LBM436/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI471134A/muscovy duck/Vietnam/LBM438/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459250A/muscovy duck/Quanh Ninh/9/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI459242A/muscovy duck/Quanh Ninh/6/2013 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI438234A/large billed crow/Hong Kong/497/2011 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI425651A/duck/Vietnam/NCVD-1968/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI425643A/duck/Vietnam/NCVD-1936/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI425627A/duck/Vietnam/NCVD-1928/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI425619A/duck/Vietnam/NCVD-1930/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI425307A/duck/Vietnam/NCVD-1904/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI425267A/duck/Vietnam/NCVD-1901/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI425155A/duck/Vietnam/NCVD-1937/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI425011A/duck/Vietnam/NCVD-1878/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI424739A/duck/Vietnam/NCVD-1932/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI424723A/duck/Vietnam/NCVD-1898/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI424699A/duck/Vietnam/NCVD-1869/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI424683A/duck/Vietnam/NCVD-1974/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI424191A/muscovy duck/Vietnam/LBM229/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI424183A/muscovy duck/Vietnam/LBM228/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI424175A/muscovy duck/Vietnam/LBM227/2012 (A/H5N1) segment 7 (MP)1764.70.000000e+00973/982 (99%)EPI631930A/rook/Sartlan/42/2015 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI589812A/duck/Quang Ninh/15c111/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI567014A/duck/Quang Ninh/13c1-2-1/2013 (A/H5N2) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI567006A/duck/Vietnam/LBM360c1-4-1/2013 (A/H5N6) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI559175A/chicken/Vietnam/NCVD-KA435/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI545551A/duck/Khanhhoa/CVVI-32/2014 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI545540A/duck/Khanhhoa/CVVI-21/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI545539A/duck/Khanhhoa/CVVI-20/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI545538A/duck/Khanhhoa/CVVI-19/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI545534A/duck/Khanhhoa/CVVI-15/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI545533A/duck/Khanhhoa/CVVI-14/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI515018A/duck/Hunan/749/2011 (A/H0) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI503719A/Japanese white-eye/Taoyuan/Q454/2012 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI489680A/tiger/Jiangsu/01/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI460951A/muscovy duck/Vietnam/LBM399/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI460943A/muscovy duck/Vietnam/LBM398/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI460733A/muscovy duck/Vietnam/LBM335/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI459867A/muscovy duck/Vietnam/LBM330/2013 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI425667A/duck/Vietnam/NCVD-1905/2012 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI425299A/duck/Vietnam/NCVD-1902/2012 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI425131A/duck/Vietnam/NCVD-1899/2012 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI425123A/duck/Vietnam/NCVD-1872/2012 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI425019A/duck/Vietnam/NCVD-1884/2012 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI424715A/duck/Vietnam/NCVD-1897/2012 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI424707A/duck/Vietnam/NCVD-1896/2012 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI424199A/muscovy duck/Vietnam/LBM230/2012 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI337023A/duck/Zhejiang/2248/2011 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI337021A/duck/Zhejiang/2244/2011 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI337020A/duck/Zhejiang/2243/2011 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI337019A/duck/Zhejiang/2242/2011 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI337018A/duck/Zhejiang/224/2011 (A/H5N1) segment 7 (MP)1759.10.000000e+00972/982 (98%)EPI622554A/duck/Vietnam/NCVD-672/2011 (A/H5N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI545555A/duck/Khanhhoa/CVVI-36/2014 (A/H5N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI545531A/chicken/Khanhhoa/CVVI-12/2013 (A/H5N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI545530A/chicken/Khanhhoa/CVVI-11/2013 (A/H5N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI545529A/duck/Khanhhoa/CVVI-10/2013 (A/H5N1) segment 7 (MP)1753.60.000000e+00971/982 (98%)EPI545528A/chicken/Khanhhoa/CVVI-09/2013 (A/H5N1) segment 7 (MP)1753.60.000000e+00971/982 (98%) Link to comment Share on other sites More sharing options...
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