University Hospital of Vigo has released a partial Zika sequence from the amniotic fluid from a pregnant case in Spain, ex-Venezuela.

LOCUS       KX358623                 191 bp    RNA     linear   VRL 12-JUN-2016
DEFINITION  Zika virus isolate AF01 nonstructural protein 5 gene, partial cds.
ACCESSION   KX358623
VERSION     KX358623.1  GI:1035155861
KEYWORDS    .
SOURCE      Zika virus
  ORGANISM  Zika virus
            Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA
            stage; Flaviviridae; Flavivirus.
REFERENCE   1  (bases 1 to 191)
  AUTHORS   Perez,S.
  TITLE     Confirmed case of Zika virus congenital infection in Spain
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 191)
  AUTHORS   Perez,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2016) Department of Microbiology, University
            Hospital of Vigo, Hospital Meixoeiro, Apartado Oficial s/n, Vigo,
            Pontevedra 36200, Spain
COMMENT     ##Assembly-Data-START##
            Sequencing Technology :: Sanger dideoxy sequencing
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..191
                     /organism="Zika virus"
                     /mol_type="genomic RNA"
                     /isolate="AF01"
                     /isolation_source="amniotic fluid"
                     /host="Homo sapiens; female"
                     /db_xref="taxon:64320"
                     /country="Venezuela"
                     /collection_date="29-Mar-2016"
                     /note="subtype: Asian Clade"
     CDS             <1..>191
                     /note="NS5"
                     /codon_start=2
                     /product="nonstructural protein 5"
                     /protein_id="ANI87834.1"
                     /db_xref="GI:1035155862"
                     /translation="LGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYA
                     DDTAGWDTRISRFDLENEA"
ORIGIN      
        1 ccttggattc ttgaacgagg atcactggat ggggagagag aactcaggag gtggtgttga
       61 agggctggga ttacaaagac tcggatatgt cctagaagag atgagtcgca taccaggagg
      121 aaggatgtat gcagatgaca ctgctggctg ggacacccgc atcagcaggt ttgatctgga
      181 gaatgaagct c

Edited June 15, 201610 yr by niman

Sequences producing significant alignments:

Select:AllNone Selected:0

AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignments

Sequences producing significant alignments:

Select for downloading or viewing reports	Description	Max score	Total score	Query cover	E value	Ident	Accession
Select seq gb|KU866423.2|	Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds	345	345	100%	2e-91	100%	KU866423.2
Select seq gb|KX358623.1|	Zika virus isolate AF01 nonstructural protein 5 gene, partial cds	345	345	100%	2e-91	100%	KX358623.1
Select seq gb|KX280026.1|	Zika virus isolate Paraiba_01, complete genome	345	345	100%	2e-91	100%	KX280026.1
Select seq gb|KX253996.1|	Zika virus isolate ZKC2/2016, complete genome	345	345	100%	2e-91	100%	KX253996.1
Select seq gb|KX197192.1|	Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome	345	345	100%	2e-91	100%	KX197192.1
Select seq gb|KX185891.1|	Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds	345	345	100%	2e-91	100%	KX185891.1
Select seq gb|KX101067.1|	Zika virus isolate Bahia12, partial genome	345	345	100%	2e-91	100%	KX101067.1
Select seq gb|KX101064.1|	Zika virus isolate Bahia11, partial genome	345	345	100%	2e-91	100%	KX101064.1
Select seq gb|KX101060.1|	Zika virus isolate Bahia02, partial genome	345	345	100%	2e-91	100%	KX101060.1
Select seq gb|KX117076.1|	Zika virus isolate Zhejiang04, complete genome	345	345	100%	2e-91	100%	KX117076.1
Select seq gb|KX059014.1|	Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds	345	345	100%	2e-91	100%	KX059014.1
Select seq gb|KX059013.1|	Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds	345	345	100%	2e-91	100%	KX059013.1
Select seq gb|KX051563.1|	Zika virus isolate Haiti/1/2016, complete genome	345	345	100%	2e-91	100%	KX051563.1
Select seq gb|KU509998.3|	Zika virus strain Haiti/1225/2014, complete genome	345	345	100%	2e-91	100%	KU509998.3
Select seq gb|KU963796.1|	Zika virus isolate SZ-WIV01 polyprotein gene, complete cds	345	345	100%	2e-91	100%	KU963796.1
Select seq gb|KU940228.1|	Zika virus isolate Bahia07, partial genome	345	345	100%	2e-91	100%	KU940228.1
Select seq gb|KU940224.1|	Zika virus isolate Bahia09, partial genome	345	345	100%	2e-91	100%	KU940224.1
Select seq gb|KU955589.1|	Zika virus isolate Z16006 polyprotein gene, complete cds	345	345	100%	2e-91	100%	KU955589.1
Select seq gb|KU926310.1|	Zika virus isolate Rio-S1, complete genome	345	345	100%	2e-91	100%	KU926310.1
Select seq gb|KU926309.1|	Zika virus isolate Rio-U1, complete genome	345	345	100%	2e-91	100%	KU926309.1
Select seq gb|KU820899.2|	Zika virus isolate ZJ03, complete genome	345	345	100%	2e-91	100%	KU820899.2
Select seq gb|KU729217.2|	Zika virus isolate BeH823339 polyprotein gene, complete cds	345	345	100%	2e-91	100%	KU729217.2
Select seq gb|KU729218.1|	Zika virus isolate BeH828305 polyprotein gene, complete cds	345	345	100%	2e-91	100%	KU729218.1
Select seq gb|KU744693.1|	Zika virus isolate VE_Ganxian, complete genome	345	345	100%	2e-91	100%	KU744693.1
Select seq gb|KU497555.1|	Zika virus isolate Brazil-ZKV2015, complete genome	345	345	100%	2e-91	100%	KU497555.1
Select seq gb|KU232300.1|	Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KU232300.1
Select seq gb|KU232298.1|	Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KU232298.1
Select seq gb|KU232297.1|	Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KU232297.1
Select seq gb|KU232294.1|	Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KU232294.1
Select seq gb|KU232292.1|	Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KU232292.1
Select seq gb|KU232290.1|	Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KU232290.1
Select seq gb|KU556802.1|	Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KU556802.1
Select seq gb|KU647676.1|	Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds	345	345	100%	2e-91	100%	KU647676.1
Select seq gb|KU321639.1|	Zika virus strain ZikaSPH2015, complete genome	345	345	100%	2e-91	100%	KU321639.1
Select seq gb|KM078970.1|	Zika virus strain CHI2490414 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KM078970.1
Select seq gb|KM078961.1|	Zika virus strain CHI2612114 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KM078961.1
Select seq gb|KM078936.1|	Zika virus strain CHI1410214 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KM078936.1
Select seq gb|KM078933.1|	Zika virus strain CHI1058514 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KM078933.1
Select seq gb|KM078930.1|	Zika virus strain CHI2283714 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KM078930.1
Select seq gb|KM078929.1|	Zika virus strain CHI1805214 NS5 protein gene, partial cds	345	345	100%	2e-91	100%	KM078929.1
Select seq gb|KF993678.1|	Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds	345	345	100%	2e-91	100%	KF993678.1
Select seq gb|KJ776791.1|	Zika virus strain H/PF/2013 polyprotein gene, complete cds	345	345	100%	2e-91	100%	KJ776791.1
Select seq gb|KU232296.1|	Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds	342	342	98%	2e-90	100%	KU232296.1
Select seq gb|KU232293.1|	Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds	342	342	98%	2e-90	100%	KU232293.1
Select seq gb|KM078971.1|	Zika virus strain CHI2613014 NS5 protein gene, partial cds	342	342	100%	2e-90	99%	KM078971.1
Select seq gb|KU820897.3|	Zika virus isolate FLR polyprotein gene, complete cds	340	340	100%	7e-90	99%	KU820897.3
Select seq gb|KX262887.1|	Zika virus isolate 103451, complete genome	340	340	100%	7e-90	99%	KX262887.1
Select seq gb|KX247646.1|	Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome	340	340	100%	7e-90	99%	KX247646.1
Select seq gb|KX198135.1|	Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome	340	340	100%	7e-90	99%	KX198135.1
Select seq gb|KX156776.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome	340	340	100%	7e-90	99%	KX156776.1
Select seq gb|KX156775.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome	340	340	100%	7e-90	99%	KX156775.1
Select seq gb|KX156774.1|	Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome	340	340	100%	7e-90	99%	KX156774.1
Select seq gb|KX087102.1|	Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome	340	340	100%	7e-90	99%	KX087102.1
Select seq gb|KU991811.1|	Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds	340	340	100%	7e-90	99%	KU991811.1
Select seq gb|KU985087.1|	Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds	340	340	100%	7e-90	99%	KU985087.1
Select seq gb|KU870645.1|	Zika virus isolate FB-GWUH-2016, complete genome	340	340	100%	7e-90	99%	KU870645.1
Select seq gb|KU179098.1|	Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds	340	340	100%	7e-90	99%	KU179098.1
Select seq gb|KU707826.1|	Zika virus isolate SSABR1, complete genome	340	340	100%	7e-90	99%	KU707826.1
Select seq gb|KU527068.1|	Zika virus strain Natal RGN, complete genome	340	340	100%	7e-90	99%	KU527068.1
Select seq gb|KU501217.1|	Zika virus strain 8375 polyprotein gene, complete cds	340	340	100%	7e-90	99%	KU501217.1
Select seq gb|KU501216.1|	Zika virus strain 103344 polyprotein gene, complete cds	340	340	100%	7e-90	99%	KU501216.1
Select seq gb|KU365780.1|	Zika virus strain BeH815744 polyprotein gene, complete cds	340	340	100%	7e-90	99%	KU365780.1
Select seq gb|KU365779.1|	Zika virus strain BeH819966 polyprotein gene, complete cds	340	340	100%	7e-90	99%	KU365779.1
Select seq gb|KU365777.1|	Zika virus strain BeH818995 polyprotein gene, complete cds	340	340	100%	7e-90	99%	KU365777.1
Select seq gb|KU232295.1|	Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds	338	338	97%	2e-89	100%	KU232295.1
Select seq gb|KU758877.1|	Zika virus isolate 17271 polyprotein gene, complete cds	336	336	100%	8e-89	99%	KU758877.1
Select seq gb|KX247632.1|	Zika virus isolate MEX_I_7 polyprotein gene, complete cds	336	336	100%	8e-89	99%	KX247632.1
Select seq gb|KX087101.2|	Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome	336	336	100%	8e-89	99%	KX087101.2
Select seq gb|KX056898.1|	Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds	336	336	100%	8e-89	99%	KX056898.1
Select seq gb|KU955590.1|	Zika virus isolate Z16019 polyprotein gene, complete cds	336	336	100%	8e-89	99%	KU955590.1
Select seq gb|KU922960.1|	Zika virus isolate MEX/InDRE/Sm/2016, complete genome	336	336	100%	8e-89	99%	KU922960.1
Select seq gb|KU922923.1|	Zika virus isolate MEX/InDRE/Lm/2016, complete genome	336	336	100%	8e-89	99%	KU922923.1
Select seq gb|KU820898.1|	Zika virus isolate GZ01 polyprotein gene, complete cds	336	336	100%	8e-89	99%	KU820898.1
Select seq gb|KU740184.2|	Zika virus isolate GD01 polyprotein gene, complete cds	336	336	100%	8e-89	99%	KU740184.2
Select seq gb|KU853013.1|	Zika virus isolate Dominican Republic/2016/PD2, complete genome	336	336	100%	8e-89	99%	KU853013.1
Select seq gb|KU853012.1|	Zika virus isolate Dominican Republic/2016/PD1, complete genome	336	336	100%	8e-89	99%	KU853012.1
Select seq gb|KU761564.1|	Zika virus isolate GDZ16001 polyprotein gene, complete cds	336	336	100%	8e-89	99%	KU761564.1
Select seq gb|KU501215.1|	Zika virus strain PRVABC59, complete genome	336	336	100%	8e-89	99%	KU501215.1
Select seq gb|KU365778.1|	Zika virus strain BeH819015 polyprotein gene, complete cds	336	336	100%	8e-89	99%	KU365778.1
Select seq gb|KU312312.1|	Zika virus isolate Z1106033 polyprotein gene, complete cds	336	336	100%	8e-89	99%	KU312312.1
Select seq gb|KU681081.3|	Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome	334	334	99%	3e-88	99%	KU681081.3
Select seq gb|KU232289.1|	Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds	331	331	95%	3e-87	100%	KU232289.1
Select seq gb|KU232288.1|	Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds	331	331	95%	3e-87	100%	KU232288.1
Select seq gb|EU545988.1|	Zika virus polyprotein gene, complete cds	331	331	100%	3e-87	98%	EU545988.1
Select seq gb|KU232299.1|	Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds	329	329	95%	1e-86	100%	KU232299.1
Select seq gb|KJ873160.1|	Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds	329	329	95%	1e-86	100%	KJ873160.1
Select seq gb|KU937936.1|	Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds	327	327	100%	4e-86	98%	KU937936.1
Select seq gb|KU940227.1|	Zika virus isolate Bahia08, partial genome	327	327	94%	4e-86	100%	KU940227.1
Select seq gb|KU955593.1|	Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome	327	327	100%	4e-86	98%	KU955593.1
Select seq gb|JN860885.1|	Zika virus isolate FSS13025 polyprotein gene, partial cds	327	327	100%	4e-86	98%	JN860885.1
Select seq gb|KU232291.1|	Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds	324	324	96%	5e-85	99%	KU232291.1
Select seq gb|KU681082.3|	Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome	322	322	100%	2e-84	97%	KU681082.3
Select seq gb|KU752544.1|	Zika virus isolate PoHuZV469196 nonstructural protein 5 gene, partial cds	313	313	90%	9e-82	100%	KU752544.1
Select seq gb|KU752545.1|	Zika virus isolate PoHuZV472846 nonstructural protein 5 gene, partial cds	307	307	90%	4e-80	99%	KU752545.1
Select seq gb|HQ234499.1|	Zika virus isolate P6-740 polyprotein gene, partial cds	300	300	100%	6e-78	95%	HQ234499.1
Select seq gb|KF258813.1|	Zika virus isolate Java non-structural protein 5 mRNA, partial cds	291	291	88%	3e-75	98%	KF258813.1
Select seq gb|KX198134.1|	Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome	250	250	98%	9e-63	89%	KX198134.1
Select seq gb|KU955595.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome	250	250	98%	9e-63	89%	KU955595.1
Select seq gb|KU955592.1|	Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome	250	250	98%	9e-63	89%	KU955592.1
Select seq gb|KU955591.1|	Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome	250	250	98%	9e-63	89%	KU955591.1
Select seq gb|KJ873161.1|	Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds	250	250	72%	9e-63	100%	KJ873161.1
Select seq gb|KF383107.1|	Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds	250	250	98%	9e-63	89%	KF383107.1
Select seq gb|KF383106.1|	Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds	250	250	98%	9e-63	89%	KF383106.1
Select seq gb|HQ234501.1|	Zika virus isolate ArD_41519 polyprotein gene, partial cds	250	250	98%	9e-63	89%	HQ234501.1
Select seq gb|DQ859059.1|	Zika virus strain MR 766 polyprotein gene, complete cds	246	246	98%	1e-61	89%	DQ859059.1
Select seq gb|KF383117.1|	Zika virus strain ArD128000 polyprotein gene, complete cds	244	244	98%	4e-61	89%	KF383117.1
Select seq gb|KF383116.1|	Zika virus strain ArD7117 polyprotein gene, complete cds	244	244	98%	4e-61	89%	KF383116.1
Select seq gb|KF383114.1|	Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds	244	244	98%	4e-61	89%	KF383114.1
Select seq gb|KF383101.1|	Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds	244	244	98%	4e-61	89%	KF383101.1
Select seq gb|KF383099.1|	Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds	244	244	98%	4e-61	89%	KF383099.1
Select seq gb|KF383098.1|	Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds	244	244	98%	4e-61	89%	KF383098.1
Select seq gb|KF383097.1|	Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds	244	244	98%	4e-61	89%	KF383097.1
Select seq gb|KF383089.1|	Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds	244	244	98%	4e-61	89%	KF383089.1
Select seq gb|KF383085.1|	Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds	244	244	98%	4e-61	89%	KF383085.1
Select seq gb|KU963573.1|	Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds	241	241	100%	5e-60	88%	KU963573.1
Select seq gb|KU955594.1|	Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome	241	241	100%	5e-60	88%	KU955594.1
Select seq gb|KU720415.1|	Zika virus strain MR 766 polyprotein gene, complete cds	241	241	100%	5e-60	88%	KU720415.1
Select seq dbj|LC002520.1|	Zika virus genomic RNA, complete genome, strain: MR766-NIID	241	241	100%	5e-60	88%	LC002520.1
Select seq gb|KF383088.1|	Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds	241	241	98%	5e-60	88%	KF383088.1
Select seq gb|KF383087.1|	Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds	241	241	98%	5e-60	88%	KF383087.1
Select seq gb|HQ234498.1|	Zika virus isolate MR_766 polyprotein gene, partial cds	241	241	100%	5e-60	88%	HQ234498.1
Select seq gb|AY632535.2|	Zika virus strain MR 766, complete genome	241	241	100%	5e-60	88%	AY632535.2
Select seq gb|AF013415.1|	Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds	241	241	100%	5e-60	88%	AF013415.1
Select seq gb|KF383104.1|	Zika virus strain ArA982 nonstructural protein 5 gene, partial cds	239	239	99%	2e-59	88%	KF383104.1
Select seq gb|KF383103.1|	Zika virus strain ArA986 nonstructural protein 5 gene, partial cds	239	239	99%	2e-59	88%	KF383103.1
Select seq gb|KF383086.1|	Zika virus strain ArA975 nonstructural protein 5 gene, partial cds	239	239	99%	2e-59	88%	KF383086.1
Select seq gb|KF268950.1|	Zika virus isolate ARB7701 polyprotein gene, complete cds	237	237	98%	6e-59	88%	KF268950.1
Select seq gb|KF268948.1|	Zika virus isolate ARB13565 polyprotein gene, complete cds	237	237	98%	6e-59	88%	KF268948.1
Select seq gb|KF383121.1|	Zika virus strain ArD158095 polyprotein gene, partial cds	230	230	99%	9e-57	87%	KF383121.1
Select seq gb|KF383119.1|	Zika virus strain ArD158084 polyprotein gene, complete cds	230	230	99%	9e-57	87%	KF383119.1
Select seq gb|KF268949.1|	Zika virus isolate ARB15076 polyprotein gene, complete cds	228	228	98%	3e-56	87%	KF268949.1
Select seq gb|KU963574.1|	Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds	223	223	98%	1e-54	86%	KU963574.1
Select seq gb|KF383115.1|	Zika virus strain ArB1362 polyprotein gene, complete cds	223	223	93%	1e-54	88%	KF383115.1
Select seq gb|KF383084.1|	Zika virus strain HD78788 nonstructural protein 5 gene, partial cds	223	223	93%	1e-54	88%	KF383084.1
Select seq gb|HQ234500.1|	Zika virus isolate IbH_30656 polyprotein gene, partial cds	223	223	98%	1e-54	86%	HQ234500.1
Select seq gb|KF383118.1|	Zika virus strain ArD157995 polyprotein gene, complete cds	210	210	93%	8e-51	86%	KF383118.1
Select seq gb|KX101065.1|	Zika virus isolate Bahia15, partial genome	203	203	58%	1e-48	100%	KX101065.1
Select seq gb|KF383113.1|	Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds	199	199	93%	1e-47	85%	KF383113.1
Select seq gb|KF383120.1|	Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence	187	187	93%	9e-44	83%	KF383120.1
Select seq gb|KF383095.1|	Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds	178	178	93%	5e-41	82%	KF383095.1
Select seq gb|KF383093.1|	Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds	178	178	93%	5e-41	82%	KF383093.1
Select seq gb|KF383092.1|	Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds	178	178	93%	5e-41	82%	KF383092.1
Select seq gb|KF383091.1|	Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds	178	178	93%	5e-41	82%	KF383091.1
Select seq gb|EU074027.1|	Zika virus strain MR 766 NS5 gene, partial cds	168	168	71%	2e-38	88%	EU074027.1
Select seq gb|HM147822.1|	West Nile virus from South Africa, complete genome	140	140	98%	1e-29	77%	HM147822.1
Select seq gb|KX101061.1|	Zika virus isolate Bahia03, partial genome	138	215	61%	4e-29	100%	KX101061.1

Sequence Map Update

https://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU

 

Eurosurveillance, Volume 21, Issue 24, 16 June 2016

Rapid communication

 

CONFIRMED CASE OF ZIKA VIRUS CONGENITAL INFECTION, SPAIN, MARCH 2016

 

S Perez ¹ , R Tato ² , JJ Cabrera ¹ , A Lopez ³ , O Robles ⁴ , E Paz ³ , A Coira ⁵ , MP Sanchez-Seco ⁶ , A Vazquez ⁶ , R Carballo ¹ , C Quintas ⁷ , A Pousa ⁸

+ Author affiliations

1. Microbiology Department, University Hospital of Vigo, Spain

2. Microbiology Department, University Hospital of Pontevedra, Spain

3. Gynecology Department, Lucus Augusti Hospital, Lugo, Spain

4. Pathology Department, Lucus Augusti Hospital, Lugo, Spain

5. Microbiology Department, Lucus Augusti Hospital, Lugo, Spain

6. Arbovirus and Imported Viral Diseases, Virology Area, National Center of Microbiology (CNM), Carlos III Health Institute (ISCIII), Majadahonda, Madrid, Spain

7. Preventive Medicine Department, Lucus Augusti Hospital, Lugo, Spain

8. General Subdirection for Epidemiology and Information Systems, General Direction of Public Health, Consellería de Sanidade, Santiago de Compostela, Spain

 

Correspondence: Sonia Perez ([email protected])

http://www.eurosurveillance.org/ViewArticle.aspx?ArticleId=22506

 

 

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Citation style for this article: Perez S, Tato R, Cabrera JJ, Lopez A, Robles O, Paz E, Coira A, Sanchez-Seco MP, Vazquez A, Carballo R, Quintas C, Pousa A. Confirmed case of Zika virus congenital infection, Spain, March 2016. Euro Surveill. 2016;21(24):pii=30261. DOI: http://dx.doi.org/10.2807/1560-7917.ES.2016.21.24.30261

Received:07 June 2016; Accepted:16 June 2016

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We describe Zika virus (ZIKV) vertical transmission in an imported case in Spain, in a 17-week pregnant woman. ZIKV IgG, IgM and RNA were detected in serum in week 17. At 19 weeks, ultrasound scan revealed fetal malformations and ZIKV was detected in the amniotic fluid. Pregnancy was terminated at week 21; autopsy of the fetus revealed bilateral hydrocephalus, brain microcalcifications and arthrogryposis multiplex congenita. ZIKV was detected in the umbilical cord and brain tissue.