niman Posted June 25, 2016 Report Share Posted June 25, 2016 LOCUS KU921608 10823 bp RNA linear VRL 20-JUN-2016 DEFINITION Yellow fever virus isolate CNYF01/2016, complete genome. ACCESSION KU921608 VERSION KU921608.1 GI:1036436399 KEYWORDS . SOURCE Yellow fever virus (YFV) ORGANISM Yellow fever virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Yellow fever virus group. REFERENCE 1 (bases 1 to 10823) AUTHORS Liu,L. TITLE Complete Genome Sequence of Yellow Fever virus isolate CNYF01/2016 from First Imported Case in China mainland, March 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10823) AUTHORS Liu,L. TITLE Direct Submission JOURNAL Submitted (13-MAR-2016) Department of Viral Hemorrhagic Fever, National Institute for Viral Diseases Control and Prevention, Changbai Road 155, Beijing 102206, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC genomic Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10823 /organism="Yellow fever virus" /mol_type="genomic RNA" /isolate="CNYF01/2016" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:11089" /country="China" /collection_date="10-Mar-2016" Link to comment Share on other sites More sharing options...
niman Posted June 25, 2016 Author Report Share Posted June 25, 2016 LOCUS KU921608 10823 bp RNA linear VRL 20-JUN-2016 DEFINITION Yellow fever virus isolate CNYF01/2016, complete genome. ACCESSION KU921608 VERSION KU921608.1 GI:1036436399 KEYWORDS . SOURCE Yellow fever virus (YFV) ORGANISM Yellow fever virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; Yellow fever virus group. REFERENCE 1 (bases 1 to 10823) AUTHORS Liu,L. TITLE Complete Genome Sequence of Yellow Fever virus isolate CNYF01/2016 from First Imported Case in China mainland, March 2016 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10823) AUTHORS Liu,L. TITLE Direct Submission JOURNAL Submitted (13-MAR-2016) Department of Viral Hemorrhagic Fever, National Institute for Viral Diseases Control and Prevention, Changbai Road 155, Beijing 102206, China COMMENT ##Assembly-Data-START## Assembly Method :: CLC genomic Workbench v. 8.5.1 Sequencing Technology :: IonTorrent ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10823 /organism="Yellow fever virus" /mol_type="genomic RNA" /isolate="CNYF01/2016" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:11089" /country="China" /collection_date="10-Mar-2016" CDS 121..10359 /note="contains structural and nonstructural proteins" /codon_start=1 /product="polyprotein" /protein_id="ANK35880.1" /db_xref="GI:1036436400" /translation="MSGRKAQGRTLGVNMVRRGVRSLSNKIKQKTKQIGNRPGPSRGV QALIFFFLFNILTGKKLTAHLKKLWRMLDPRQGLAVLRKVKRVVASLMRGLASRKRRS NEMALFPLLLLGLLALSGGVTLVRKNRWLLLNVTAEDLGKTFSVGTGNCTTNILEAKY WCPDSMEYNCPNLSPREEPDDIDCWCYGVENVRVAYGRCDAVGRSKRSRRAIDLPTHE NHGLKTRQEKWMTGRMGERQLQKIERWLVRNPFFAVTALAIAYLVGNNTTQRVVIALL VLAVGPAYSAHCIGITDRDFIEGVHGGTWVSATLEQDKCVTVMAPDKPSLDISLQTVA IDGPAEARKVCYSAVLTHVKINDKCPSTGEAHLAEENDGDNACKRTYSDRGWGNGCGL FGKGSIVACAKFTCAKSMSLFEVDQTKIQYVIRAQLHVGAKQENWNTDIKTLKFDALS GSQEAEFTGYGKATLECQVQTAVDFGNSYIAEMEKDSWIVDRQWAQDLTLPWQSGSGG IWREMHHLVEFEPPHAATIRVLALGNQEGSLKTALTGAMRVTKDENDNNLYKLHGGHV SCRVKLSALTLKGTSYKMCTDKMSFVKNPTDTGHGTVVMQVKVPKGAPCKIPVIVADD LTAAVNKGILVTVNPIASTNDDEVLIEVNPPFGDSYIIVGTGDSRLTYQWHKEGSSIG KLFTQTMKGAERLAVMGDAAWDFSSAGGFFTSVGKGIHTVFGSAFQGLFGGLSWITKV IMGAVLIWVGINTRNMTMSMSMILVGVIMMFLSLGVGADQGCAVNFGKRELKCGDGIF VFRDSDDWLTKYSYYPEDPVKLASIIKASHEEGKCGLNSVDSLEHEMWRSRADEINAI FEENEVDISVVVQDPKNIYQRGTHPFSRIRDGLQYGWKTWGKNLVFSPGRKNGSFIID GKSRKECPFSNRVWNSFQIEEFGMGVFTTRVFMDATFDYSVDCDGAILGAAVNGKKSA HGSPTFWMGSHEVNGTWMIHTLETLDYKECEWPLTHTIGTSVEESDMFMPRSIGGPVS SHNRIPGYKVQTNGPWMQVPLEVKREVCPGTSVVVDSNCDGRGKSTRSTTDSGKIIPE WCCRSCTMPPVSFHGSDGCWYPMEIRPMKTSDSHLVRSWVTAGEVHAVPFGLVSMMIA MEVVLRRRQGPKQMLVGGVVLLGAMLVGQVTVLDLVKFVVAVGLHFHEINNGGDAMYM ALIASFSIRPGLLMGFGLRTLWSPRERLVMAFGAAMVEIALGGMMGGLWQYLNAVSLC VLTINAISSRKASNMILPLMALMTPMTMHEVRMATMLFCTVVIIGVLHQNSKDTSMQK TIPIVALTLTSYMGLTQPFLGLCAYMSTQVFGRRSIPVNEALAAAGLVGVLAGLAFQD MENFLGPIAVGGILMMLVSVAGRVDGLELRKLGEISWEEEAEISGSSSRYDVALSEQG EFKLLSEDKVPWDQIVMTSLALVGAAIHPFALLLVLGGWILHIKGARRSGDVLWDIPT PKVIEECEHLEDGIYGIFQSTFLGASQRGVGVAQGGVFHTMWHVTRGAFLLRNGKKLV PSWASVKEDLVAYGGSWKLDGRWDGEEEVQLIAAVPGKSVVNVQTKPSLFKVKNGGEI GAVALDYPSGTSGSPIVNRNGEVVGLYGNGILVGDNSFVSAISQTELKEESKEELQEI PTMLKKGMTTILDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFQG LDVKFHTQAFSAHGSGKEVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIA ARGWAAHRARANESATILMTATPPGTSDEFPHSNGEIEDVQTDIPSEPWTTGHEWILA DKRPTAWFLPSIRAANVMAASLRKAGKNVVVLNRKTFEKEYPTIKQKKPDFILATDIA EMGANLCVERVLDCRTAYKPVLVDEGKKVAIKGPLRISASSAAQRRGRIGRNPNRDGD SYYYSEPTSEDNAHHVCWLEASMLLDNMEVRGGMVAPLYGIEGTKTPVSPGEMRLRDD QRRVFRELVRGCDLPVWLAWQVAKAGLKTNDRKWCFEGPEEHEILNDNGETVKCRSPG GAKRALRPRWCDERVSSDQSALADFIKFAEGRRGAAEMLVILTELPDFLAKKGGEAMD TISVFLHSEEGSRAYRNALSMMPEAMTIVMLFLLAGLLTSGAVIFFMSPKGMSRMSMA MGTMAGSGYLMFLGGVKPTHISYVMLIFFVLMVVIIPEPGQQRSIQDNQVAYLIIGIL TLLSVVAANELGMLEKTKEDFFGKRDITTPSGAIPWSWPDLDLKPGAAWTVYVGIVTM LSPMLHHWIKVEYGNLSLSGIAQSASVLSFMDKGIPFMKMNISVVILLVSGWNSITVI PLLCGIGGAMLHWTLILPGIKAQQSKLAQKRVFHGVAKNPVVDGNPTADIEEAPEMPA LYEKKLALYLLLALSLMSVAMCRTPFSLAEGIVLSSAALGPLIEGNTSLLWNGPMAVS MTGVMRGNYYAFVGVMYNLWKMKTGRRGRASGKTLGEVWKRELNLLDKQQFEMYKRTD IIEVDRDMARRHLAEGKVDTGVAVSRGTAKLRWFHERGYVKLEGRVTDLGCGRGGWCY YAAAQKEVSGVKGYTLGRDGHEKPMNVQSLGWNIVTFKDKTDIHRLEPLKCETLLCDI GESSPSSATEGERTLRVLDTVEKWLACGVDNFCIKVLAPYMPDVIEKLELLQRRFGGT VIRNPLSRNSTHEMYYVSGARSNITFTVNQTSRLLMRRMRRPTGKVTLEADVILPIGT RSVETDKGPLDKDAIEERVERIKNEYATTWFYDNDNPYRTWHYCGSYVTKTSGSAASM INGVIKILTFPWDRIEEVTRMAMTDTTPFGQQRVFKEKVDTRAKDPPAGTRKIMKVVN RWLFRHLSREKNPRLCTKEEFIAKVRSHAAVGAFLEEQEQWKTANEAVLDPKFWEMVD AERKLHQQGRCQSCVYNMMGKREKKLSEFGKAKGSRAIWYMWLGARFLEFEALGFLNE DHWASRENSGGGVEGIGLQYLGYVIRDLSTKEGGGFYADDTAGWDTRITEADLDDEQE IMSYMSPEQRKLAWAIMEMTYKNKVVKVLRPAPGGKAFMDIISRRDQRGSGQVVTYAL NTITNLKVQLIRMAEAEMVINHQHVQECGENVLERLETWLAENGCDRLSRMAVSGDDC VVRPVDDRFGLALSHLNAMSKVRKDISEWQPSKGWTDWENVPFCSHHFHELVLKDGRK IVVPCRDQDELIGRGRVSPGNGWMIKETACLSKAYANMWSLMYFHKRDMRLLSFAVSS AVPTAWVPSGRTTWSVHGRGEWMTTEDMLDVWNRVWVLNNPHMTDKTTIKEWRDVPYL TKRQDKLCGSLIGMTNRATWASHIHLVIHRIRTLIGQEKFTDYLTVMDRYSVDADLQP GELI" ORIGIN 1 agtaaatccc tgtgtgctaa ttgaggtgca ttggtctgca aatcgagttg ctaggcaata 61 aacacatttg gattaatttt aatcgctcaa tgagcgatta gcagagaact gaccagagaa 121 atgtctggtc gaaaagctca gggtagaacc ctgggcgtca atatggtaag acgaggggtt 181 cgctccttgt caaacaaaat aaaacaaaaa acaaaacaga ttggaaacag acctggccct 241 tcaagaggtg ttcaagcatt aattttcttc tttttgttta acattctgac tgggaaaaag 301 ttgactgctc atctaaaaaa actctggagg atgcttgatc caaggcaggg acttgctgta 361 ctgcgaaagg tcaaaagagt tgtagctagc ttaatgagag gactggcttc caggaaacgt 421 agatccaatg aaatggcctt gtttccactc ttgttactgg gtttgttggc tctatcagga 481 ggagtgaccc tcgtcagaaa gaacagatgg ttgctcctga atgtaactgc tgaagacctg 541 gggaaaacgt tttcagtggg aactgggaat tgcaccacga atattctgga agcaaaatac 601 tggtgccccg actcaatgga atacaattgc cccaatctca gtccaagaga agagccagat 661 gacatagatt gctggtgtta tggagtggaa aatgtcagag tggcctatgg aagatgtgat 721 gcggtagggc gatcaaaacg ctccaggaga gcgattgatc tacccacaca tgagaaccat 781 ggactaaaga ctcggcagga gaagtggatg acaggcagaa tgggtgagag gcagctccag 841 aagattgaaa gatggctggt taggaatcca ttttttgcgg tcacagcatt ggcaatagcc 901 tatctggtgg gtaacaacac gacacaacga gtggtcatag cactactggt tctagcggtt 961 ggtccagcgt actctgccca ttgcataggg ataaccgaca gagatttcat tgaaggtgtc 1021 catgggggca cttgggtgtc agccactctg gagcaggaca aatgcgtgac tgtaatggcc 1081 cctgacaaac cttctctgga catctcacta caaacagtgg caatcgatgg accggctgaa 1141 gcgaggaagg tttgctacag tgcagtccta acccatgtga agatcaatga caaatgcccg 1201 agcactggtg aggcccacct tgcagaggaa aatgatggtg acaatgcttg taaacggaca 1261 tattctgaca gaggctgggg caatggctgt ggtctttttg ggaaaggaag catcgtggct 1321 tgtgccaagt ttacatgtgc caaatctatg agtctctttg aggtggatca gaccaaaatc 1381 caatatgtca tcagggccca gctccatgtg ggtgccaaac aggaaaactg gaacacagac 1441 ataaaaacgc tgaaatttga tgctctttct ggctcacagg aggctgaatt cactggttat 1501 ggaaaggcaa cactagagtg tcaggtccag actgccgtgg actttgggaa cagctacatc 1561 gcagagatgg aaaaagatag ctggatcgtt gaccgccaat gggcacagga cttgacactg 1621 ccatggcaga gtgggagtgg tggcatatgg agagaaatgc accaccttgt tgagtttgag 1681 cccccacatg ctgccacaat tagggtgctg gccttgggca atcaagaagg ctccttgaag 1741 accgctctca caggcgctat gcgcgtcacc aaggatgaga atgacaacaa cttgtacaaa 1801 ctgcacggtg gtcacgtctc ctgtagagtg aaactgtcag ccctcactct caaaggaaca 1861 tcctacaaga tgtgcacaga caaaatgtca tttgtcaaga atccaacgga tacagggcat 1921 ggcacagttg tcatgcaagt aaaggtcccc aaaggggccc catgcaagat tcctgtgatt 1981 gtggcagatg acctaacggc agcagtgaac aaaggcatct tggtcactgt caatcctatt 2041 gcatccacaa atgatgatga agttctgatt gaggtcaatc ccccttttgg ggatagctac 2101 atcatagttg ggactggaga ctcacgactg acctatcagt ggcacaaaga agggagttca 2161 ataggaaaat tgttcacaca gacaatgaaa ggagctgaac gtcttgcagt gatgggtgat 2221 gctgcttggg attttagttc tgctgggggg ttcttcacat ctgtgggaaa aggaatccat 2281 accgtgtttg gctcggcctt ccaggggctg tttggtggct tgagttggat cacgaaagtc 2341 atcatgggag ccgtgctcat ctgggtggga ataaacaccc gcaacatgac catgtccatg 2401 tccatgatct tggtaggtgt gatcatgatg tttctttcac taggagttgg ggctgaccaa 2461 ggatgtgctg ttaactttgg gaaacgcgag ctcaaatgcg gagatggcat ctttgtgttt 2521 agagactctg atgactggct cacaaagtac tcatactatc ctgaagaccc tgtcaaattg 2581 gcatccatca ttaaagcctc ccacgaggag ggcaaatgtg gattgaattc agttgattcc 2641 ctcgaacacg agatgtggag gagtagggcg gatgagatca acgccatttt tgaagaaaat 2701 gaagtagaca tctcggtcgt cgtccaagac ccaaagaaca tctaccaaag agggacccac 2761 ccgttctcaa ggatccgtga cggattgcag tatggatgga agacctgggg aaaaaacctt 2821 gttttctcac cagggaggaa gaacggcagc ttcatcattg acgggaagtc acgaaaggag 2881 tgccccttct ctaacagagt gtggaactca ttccagattg aggagtttgg catgggggtc 2941 ttcacaacac gagtgtttat ggacgcgacc tttgactatt cagtggactg tgatggagcc 3001 atcctgggtg cagcggtaaa tggaaagaag agtgcccatg gatcacccac attttggatg 3061 ggaagtcatg aagtcaatgg aacgtggatg atacacactt tggaaactct tgattacaag 3121 gagtgtgaat ggccactgac acacactatt ggaacctcag tagaagaaag tgacatgttc 3181 atgccccggt ccattggagg tccggtgagt tctcacaacc gcatcccggg ttacaaggtg 3241 caaaccaatg ggccatggat gcaagtcccc ctggaagtaa aaagggaagt ctgtccaggg 3301 acaagcgtgg tggtggactc caactgtgat ggacgtggaa aatcaacgag atcaaccact 3361 gacagtggga aaataatccc ggaatggtgt tgcagatctt gtactatgcc tccagtcagc 3421 ttccatggaa gcgatggttg ttggtatcct atggagatca gacccatgaa aacatccgac 3481 agccacctag tgagatcctg ggtgactgca ggagaagttc atgcagtacc ctttggactg 3541 gtgagcatga tgattgccat ggaggtggtg ttgcgcagaa ggcaaggacc aaaacaaatg 3601 ctggtaggag gagttgtgct gcttggagcg atgttagtgg gacaagtcac agtcttagac 3661 cttgtgaagt ttgttgtggc agtgggattg cacttccatg aaattaataa cggaggagat 3721 gccatgtaca tggcattgat tgccagcttt tccatccggc caggcctgct catgggcttt 3781 gggctgcgca cactgtggag tcctcgcgag cgacttgtaa tggcatttgg agcagccatg 3841 gttgagattg ccttaggtgg aatgatgggt gggctttggc agtacttgaa cgccgtttca 3901 ctgtgtgtgc tcaccataaa tgcaatctca tcaaggaagg cctcaaatat gatcctcccc 3961 ctgatggcac tcatgactcc catgacaatg catgaggtga ggatggcgac gatgctgttc 4021 tgcactgttg tcataatagg ggtgcttcat cagaattcaa aagacacatc tatgcaaaag 4081 accattccca ttgtagccct gacactgacc tcatacatgg gcttgaccca gccctttcta 4141 gggctgtgtg catacatgtc cacgcaggtg tttggcagaa ggagtatacc tgtgaatgaa 4201 gccttggcag cggctggctt ggtgggagtg ctagcagggc tagccttcca agacatggaa 4261 aactttttgg gtccaatagc ggtggggggg atcctcatga tgttagttag tgtggcaggg 4321 agagttgatg gactagagct caggaaactt ggtgaaatct cctgggaaga agaagctgaa 4381 ataagtggaa gctctagccg ctatgatgtg gcactcagtg agcagggtga atttaaactc 4441 ctctcagagg acaaagtgcc ctgggaccag atagtaatga catccctagc cctcgtggga 4501 gcagccatac atccatttgc cctcttgctg gtcttgggag gatggatcct gcacattaaa 4561 ggtgctagga ggagtgggga tgttctttgg gacattccta cgccaaaggt gattgaggaa 4621 tgtgagcacc tggaggatgg gatctatggc atatttcagt caaccttcct tggagcctcg 4681 cagcgaggtg ttggagtggc gcagggaggg gtcttccaca caatgtggca tgtcactagg 4741 ggggcattcc tcttgaggaa tggaaagaaa ctggttccgt cttgggcttc tgtgaaggag 4801 gatctggtgg cttatggtgg ttcctggaaa ctagacggga gatgggatgg tgaggaggaa 4861 gtccaactca tcgctgctgt gcctggaaaa tctgttgtca acgttcaaac aaaaccaagc 4921 ttgttcaaag tgaaaaatgg tggtgagatt ggagcagttg ctctagacta ccccagtgga 4981 acctcaggct cccccattgt gaaccgaaat ggtgaagtgg ttgggctcta tggcaatgga 5041 attctggtgg gtgataactc ctttgtgtct gccatctcac aaactgaatt gaaggaagaa 5101 tccaaagaag aactgcaaga aataccaact atgctgaaaa aaggaatgac caccatcctt 5161 gacttccacc ctggggcggg gaaaacccgt aggttcctgc ctcaaatatt ggcggagtgt 5221 gccagaaggc gtttgcgcac tctggtatta gcacccacca gggttgtttt gtcagagatg 5281 aaagaagctt ttcaggggtt ggatgtgaaa ttccacacac aagctttctc agcccatggg 5341 agtgggaagg aggtcattga cgcaatgtgc catgcaaccc ttacatatag aatgctggaa 5401 ccaacaaggg tagtcaactg ggaggtcatt attatggatg aggcgcactt tctggatcct 5461 gctagcatag cagcgagagg ctgggcggct catagagcaa gagcaaatga gagcgccacc 5521 atacttatga ccgccacccc accaggcacc agtgacgaat tccctcactc caatggtgag 5581 attgaggacg tccagactga catccccagc gagccatgga ccacaggaca tgaatggatc 5641 ttggcggaca agcgcccaac tgcatggttc cttccatcga tcagagcagc aaatgtcatg 5701 gcagcctcgc tgcggaaagc gggaaaaaat gtggtggtac tgaataggaa aacctttgaa 5761 aaggagtacc ccaccattaa gcagaagaaa ccggatttca tccttgccac cgatatcgct 5821 gagatgggag caaacttgtg tgtggagaga gtcttggact gcagaactgc ctacaagcct 5881 gtcctggttg atgaagggaa gaaggtggct atcaaagggc cgctacgaat ctcagcgtca 5941 tcggccgctc agaggagagg acgcattgga cgcaatccca acagagatgg tgactcttac 6001 tactactcag aacctaccag tgaggacaat gcacaccatg tgtgctggct ggaggcttcc 6061 atgctcctgg ataacatgga ggttagaggg gggatggttg ctccacttta tggcattgag 6121 ggaacaaaga ctcccgtctc tccaggagaa atgaggctaa gagatgatca gagaagggtc 6181 tttagagagt tggtgcgagg gtgtgatttg ccagtgtggt tggcatggca agtggcaaaa 6241 gccggcctga agaccaatga ccgcaaatgg tgttttgagg gtcccgaaga gcatgaaata 6301 ctcaatgaca atggtgaaac agtaaagtgt agatctccgg gcggagcaaa aagagcattg 6361 agacctagat ggtgtgacga gagagtttcc tcagaccaga gtgccttggc tgacttcatt 6421 aagtttgcag aaggtagaag aggggctgct gagatgcttg tgatcctcac ggagttgccc 6481 gacttcctgg caaagaaggg tggggaagcc atggatacca tcagtgtgtt cctacattct 6541 gaagagggtt caagagcgta cagaaatgcc ctgtcaatga tgccagaagc catgaccatt 6601 gtcatgctct tcctgcttgc cggactcttg acctcaggag cggtgatttt cttcatgtcg 6661 ccaaaaggca tgagtagaat gtcaatggca atgggtacca tggctggcag tggatatctc 6721 atgtttctgg ggggagtaaa accaacccac atctcttacg tcatgttaat attctttgtc 6781 ctcatggtcg tcataattcc cgaaccagga cagcagagat caatccagga taaccaagtt 6841 gcctacctca taattgggat cttgacattg ttatcagttg tggcagctaa tgaactaggg 6901 atgctggaga agaccaagga agattttttt ggaaagagag acatcacaac accaagtggg 6961 gcaatcccat ggagttggcc tgacctggat ctgaaacctg gggcggcctg gacagtctat 7021 gtgggaatcg tgacgatgtt gtctcccatg ttacaccatt ggataaaagt tgagtatggc 7081 aatttgtcac tatcgggaat agcccaatct gcctcagttc tttcatttat ggacaaagga 7141 attcccttca tgaaaatgaa tatatctgtg gtcatacttt tggtcagtgg ctggaattca 7201 atcacagtga tccctctttt gtgcggcatt ggtggagcca tgctgcactg gacgctcata 7261 cttcctggga ttaaagccca gcaatcaaag ctggctcaaa aaagagtttt tcatggagtg 7321 gcaaaaaatc cagttgttga tggcaatcca actgctgaca ttgaggaagc cccagaaatg 7381 ccagctttat atgaaaagaa gctggctctt tacctccttc tggccctaag cctcatgtca 7441 gttgccatgt gcagaacccc tttttcctta gcggaaggaa tagtactgtc atctgccgcc 7501 cttggacctc tcattgaggg gaacactagt ctgttgtgga atggcccaat ggccgtttcc 7561 atgactggag tcatgcgtgg caactactac gcttttgtgg gagtcatgta caatctctgg 7621 aaaatgaaaa cagggcgtag agggagagca agtggaaaaa cattgggtga ggtctggaag 7681 cgtgaactta acttgctaga caaacaacaa tttgaaatgt acaaaagaac agacatcatt 7741 gaggtggacc gagacatggc acgacgacac ttggcagagg gaaaggtgga cacgggagtg 7801 gccgtgtcga gagggactgc aaagctgaga tggttccacg agcgtggcta tgtgaagcta 7861 gaaggaaggg tcaccgatct tgggtgtgga cgtggaggct ggtgctacta tgcagcagct 7921 caaaaagaag ttagtggtgt gaaggggtat acccttggca gagatggcca tgagaaacct 7981 atgaatgtcc aaagcttggg atggaatatt gtgactttta aggacaagac tgatattcac 8041 cgactggagc cactcaagtg tgaaactctc ctctgtgaca tcggagaatc gtccccatcc 8101 tccgcaactg agggtgagag gaccttaaga gttctggaca cagttgaaaa gtggttggct 8161 tgtggagtgg ataacttttg catcaaagtt ctggcaccat acatgcccga tgtgatagag 8221 aaactggagc ttcttcaaag aagattcggt ggaaccgtca tcaggaatcc tctgtccaga 8281 aattctactc atgaaatgta ctacgtttca ggagcaagaa gtaacatcac attcacagtt 8341 aaccagacat cacgcctgct gatgcgaagg atgaggcggc ccacaggcaa agttaccttg 8401 gaagctgatg tcattcttcc gataggcacg cgcagtgtgg aaactgataa aggcccattg 8461 gataaggatg ctattgagga aagagttgag agaatcaaga atgaatatgc cactacatgg 8521 ttctatgaca atgacaaccc gtatagaacg tggcattatt gtggctccta tgtgaccaaa 8581 acgtcaggaa gtgcagccag catgataaat ggagtcatca aaatcttgac ttttccatgg 8641 gacaggatag aagaagtcac aagaatggca atgactgaca ccacaccttt tggacaacaa 8701 agagttttca aggagaaagt agacacaaga gcaaaagacc ctcctgctgg aacaaggaag 8761 atcatgaagg tggtgaatag atggttgttt cggcatctgt ccagggagaa gaaccccagg 8821 ttgtgcacca aagaagaatt cattgccaaa gtacggagcc atgcagcagt gggggctttt 8881 ctagaggaac aagagcagtg gaaaacggcc aatgaggcag tccttgatcc aaagttttgg 8941 gaaatggtcg atgcagaacg caaacttcat cagcaggggc gatgccaatc ctgtgtgtac 9001 aacatgatgg gaaagaggga aaagaaactc tctgaatttg gaaaggccaa agggagccgt 9061 gctatctggt acatgtggct tggggcacgg ttccttgagt ttgaagctct tgggttttta 9121 aatgaagatc actgggcctc ccgggagaac tcggggggag gagttgaggg cataggactc 9181 cagtacttgg gctatgttat cagggacttg tcaaccaaag aaggtggagg gttttatgcg 9241 gatgacacgg cagggtggga cacacgcatc acagaagctg acctggatga cgagcaagag 9301 atcatgagtt acatgagccc tgaacaaagg aagctggcct gggctataat ggaaatgaca 9361 tacaagaaca aagtggttaa ggtgctgagg ccagccccag gaggcaaggc cttcatggac 9421 atcatcagcc ggagagacca aagggggtca ggacaagttg tgacatacgc cctcaacacc 9481 ataaccaatc taaaagtcca gctcataaga atggctgaag ctgaaatggt gatcaaccat 9541 cagcatgtgc aggagtgtgg tgaaaatgtc ttagagcggc ttgaaacttg gcttgctgaa 9601 aacggatgtg acagattgag ccgaatggct gtgagtgggg atgattgtgt tgtgagaccg 9661 gtggatgaca gatttggcct ggccctttcc catcttaatg caatgtccaa agttaggaag 9721 gacatttcag aatggcaacc ctccaaagga tggacagatt gggaaaatgt tcctttctgc 9781 tcccaccact tccatgaact ggtgttgaaa gatgggagga agatagtggt gccttgcaga 9841 gatcaagatg aactgatagg gagagggaga gtgtccccag gaaatggctg gatgatcaag 9901 gaaacagcct gcctcagcaa agcttacgca aacatgtggt cactgatgta ctttcacaag 9961 agggacatga ggctactttc attcgctgtc tcctccgctg ttccaacggc ctgggtgccc 10021 agtggaagga caacgtggtc tgtccacgga agaggggagt ggatgacaac tgaggacatg 10081 ctagatgtct ggaacagggt gtgggtgttg aataacccgc acatgacgga caaaacaacc 10141 atcaaggagt ggagagatgt tccctacctc acaaagagac aggataagct ttgcgggtca 10201 ctgataggaa tgacaaacag ggccacatgg gcatctcaca tccaccttgt gatccaccgg 10261 atcagaactc taataggtca agagaagttc acagactacc tcaccgtcat ggacaggtat 10321 tctgttgatg ccgaccttca gccaggagag cttatctgag acattacaac atggaaaacc 10381 gggataaaaa ctacgggtgg agaaccggac tccccacttg agaaatgtaa ataaaaaacc 10441 gggataaaaa caacggatgg agaaccggac tccacactga ataggctata aacgtcagcc 10501 caggatccaa aatttgaatg ggtcttgcca ccgctaagct gtgaggcggt gcgggctggg 10561 acagccgttt cccgggcaac gacatgcctg gtttctggga cttcccaacc cggagtaaaa 10621 cgaaggagcc tccgccacca ccctcccacg gggtgttgga aagatggggt ctagaggtta 10681 gaggagaccc tccagggaaa ttagtgggac catattgacg ccagggaaag accggagtgg 10741 ttctctgctt ttcctccagg ggtctgcgag cacagtttgc tctagaagaa gcagaccttt 10801 ggatgacaaa acacaaaacc act Link to comment Share on other sites More sharing options...
niman Posted June 25, 2016 Author Report Share Posted June 25, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KU921608.1|Yellow fever virus isolate CNYF01/2016, complete genome1846518465100%0.0100%KU921608.1Select seq gb|KX027336.1|Yellow fever virus isolate CIC4, complete genome1834818348100%0.099%KX027336.1Select seq gb|KX010995.1|Yellow fever virus isolate CIC2, complete genome1833918339100%0.099%KX010995.1Select seq gb|KX010996.1|Yellow fever virus isolate CIC3, complete genome1832318323100%0.099%KX010996.1Select seq gb|KX010994.1|Yellow fever virus isolate CIC1, complete genome1804218042100%0.099%KX010994.1Select seq gb|AY968064.1|Yellow fever virus strain Angola71, complete genome1770317703100%0.098%AY968064.1Select seq gb|DQ235229.1|Yellow fever virus strain Couma, complete genome1132411324100%0.085%DQ235229.1Select seq gb|AY968065.1|Yellow fever virus strain Uganda48a, complete genome1130111301100%0.084%AY968065.1Select seq gb|JN620362.1|Yellow fever virus strain Uganda 2010, complete genome1129011290100%0.084%JN620362.1Select seq gb|JF912179.1|Yellow fever virus strain BeAR378600, complete genome87818781100%0.079%JF912179.1Select seq gb|JF912185.1|Yellow fever virus strain BeAR513008, complete genome87638763100%0.079%JF912185.1Select seq gb|AY603338.1|Yellow fever virus strain Ivory Coast 1999, complete genome87608760100%0.079%AY603338.1Select seq gb|JF912186.1|Yellow fever virus strain BeH526722, complete genome87498749100%0.079%JF912186.1Select seq gb|JF912184.1|Yellow fever virus strain BeH463676, complete genome87428742100%0.079%JF912184.1Select seq gb|AY572535.1|Yellow fever virus strain Gambia 2001, complete genome87298729100%0.079%AY572535.1Select seq gb|JX898868.1|Yellow fever virus isolate HD117294 from Senegal, complete genome87278727100%0.079%JX898868.1Select seq gb|JF912183.1|Yellow fever virus strain BeH423602, complete genome87278727100%0.079%JF912183.1Select seq gb|JX898873.1|Yellow fever virus isolate ArD149214 from Senegal, complete genome87228722100%0.079%JX898873.1Select seq gb|JX898874.1|Yellow fever virus isolate ArD149194 from Senegal, complete genome87168716100%0.079%JX898874.1Select seq gb|KM388817.1|Yellow fever virus strain 2A polyprotein gene, complete cds87138713100%0.079%KM388817.1Select seq gb|JX898875.1|Yellow fever virus isolate ArD149815 from Senegal, complete genome87138713100%0.079%JX898875.1Select seq gb|JX898870.1|Yellow fever virus isolate ArD121040 from Senegal, complete genome86978697100%0.079%JX898870.1Select seq gb|KM388816.1|Yellow fever virus strain 10A polyprotein gene, complete cds86958695100%0.079%KM388816.1Select seq gb|JX898880.1|Yellow fever virus isolate ArD181564 from Senegal, complete genome86938693100%0.079%JX898880.1Select seq gb|JX898877.1|Yellow fever virus isolate ArD181464 from Senegal, complete genome86918691100%0.079%JX898877.1Select seq gb|JF912187.1|Yellow fever virus strain BeH622205, complete genome86918691100%0.079%JF912187.1Select seq gb|JX898878.1|Yellow fever virus isolate ArD181250 from Senegal, complete genome86898689100%0.079%JX898878.1Select seq gb|JF912188.1|Yellow fever virus strain BeH622493, complete genome86888688100%0.079%JF912188.1Select seq gb|JF912180.1|Yellow fever virus strain BeH394880, complete genome86808680100%0.079%JF912180.1Select seq gb|JX898876.1|Yellow fever virus isolate ArD156468 from Senegal, complete genome86688668100%0.079%JX898876.1Select seq gb|JF912189.1|Yellow fever virus strain BeAR646536, complete genome86528652100%0.079%JF912189.1Select seq gb|JF912182.1|Yellow fever virus strain BeH422973, complete genome86528652100%0.079%JF912182.1Select seq gb|JF912190.1|Yellow fever virus strain BeH655417, complete genome86508650100%0.079%JF912190.1Select seq gb|HM582851.1|Yellow fever virus strain TVP11767 polyprotein gene, complete cds86468646100%0.079%HM582851.1Select seq gb|JX898869.1|Yellow fever virus isolate DakArAmt7 from Cote d'Ivoire, complete genome86418641100%0.079%JX898869.1Select seq gb|KM388815.1|Yellow fever virus strain 9A polyprotein gene, complete cds86328632100%0.079%KM388815.1Select seq gb|KM388814.1|Yellow fever virus strain 6A polyprotein gene, complete cds86328632100%0.079%KM388814.1Select seq gb|AY640589.1|Yellow fever virus strain ASIBI, complete genome86308630100%0.079%AY640589.1Select seq gb|KF769016.1|Yellow fever virus strain Asibi, complete genome86268626100%0.079%KF769016.1Select seq gb|KM388818.1|Yellow fever virus strain 8A polyprotein gene, complete cds85968596100%0.079%KM388818.1Select seq gb|KF907504.1|Yellow fever virus strain 88/1999, complete genome85798579100%0.079%KF907504.1Select seq gb|U21056.1|YFU21056Yellow fever virus French viscerotropic strain, complete genome85678567100%0.079%U21056.1Select seq gb|JX898872.1|Yellow fever virus isolate ArD114972 from Senegal, complete genome85438543100%0.079%JX898872.1Select seq gb|JX898871.1|Yellow fever virus isolate ArD114896 from Senegal, complete genome85348534100%0.079%JX898871.1Select seq gb|DQ100292.1|Yellow fever virus strain 17DD-Brazil, complete genome85278527100%0.079%DQ100292.1Select seq gb|U21055.1|YFU21055Yellow fever virus French neurotropic strain, complete genome85228522100%0.079%U21055.1Select seq gb|U17066.1|YFU17066Yellow fever virus vaccine strain 17DD, complete genome85098509100%0.078%U17066.1Select seq gb|GQ379162.1|Yellow fever virus strain case #1, complete genome85078507100%0.078%GQ379162.1Select seq emb|X03700.1|Yellow fever virus complete genome, 17D vaccine strain85048504100%0.078%X03700.1Select seq gb|KF769015.1|Yellow fever virus strain 17D-204, complete genome85008500100%0.078%KF769015.1Select seq gb|JN811143.1|Yellow fever virus 17D YF-VAX Vero adapted Series C P11, complete genome85008500100%0.078%JN811143.1Select seq gb|JX503529.1|Yellow fever virus strain YF/Vaccine/USA/Sanofi-Pasteur-17D-204/UF795AA/YFVax, complete genome85008500100%0.078%JX503529.1Select seq gb|JN628279.1|Yellow fever virus strain 17D RKI, complete genome85008500100%0.078%JN628279.1Select seq gb|AF052444.1|AF052444Yellow fever virus clone HONG8 polyprotein gene, complete cds85008500100%0.078%AF052444.1Select seq gb|JX949181.1|Yellow fever virus strain 17D polyprotein gene, complete cds84958495100%0.078%JX949181.1Select seq gb|GQ379163.1|Yellow fever virus strain case #2, complete genome84958495100%0.078%GQ379163.1Select seq gb|FJ654700.1|Yellow fever virus 17D/Tiantan, complete genome84958495100%0.078%FJ654700.1Select seq gb|DQ118157.1|Yellow fever virus isolate YF-AVD2791-93F/04 from Spain, complete genome84958495100%0.078%DQ118157.1Select seq emb|X15062.1|Yellow fever virus genomic RNA84958495100%0.078%X15062.1Select seq gb|AF052446.1|AF052446Yellow fever virus clone HONG10 polyprotein gene, complete cds84958495100%0.078%AF052446.1Select seq gb|AF052439.1|AF052439Yellow fever virus clone HONG3 polyprotein gene, complete cds84958495100%0.078%AF052439.1Select seq gb|AF052437.1|AF052437Yellow fever virus clone HONG1 polyprotein gene, complete cds84958495100%0.078%AF052437.1Select seq gb|U17067.1|YFU17067Yellow fever virus vaccine strain 17D-213, complete genome84958495100%0.078%U17067.1Select seq gb|JN811141.1|Yellow fever virus 17D YF-VAX Vero adapted Series A P11, complete genome84918491100%0.078%JN811141.1Select seq gb|AF052445.1|AF052445Yellow fever virus clone HONG9 polyprotein gene, complete cds84918491100%0.078%AF052445.1Select seq gb|AF052438.1|AF052438Yellow fever virus clone HONG2 polyprotein gene, complete cds84918491100%0.078%AF052438.1Select seq gb|JN811142.1|Yellow fever virus 17D YF-VAX Vero adapted Series B P11, complete genome84868486100%0.078%JN811142.1Select seq gb|U54798.1|YFU54798Yellow fever virus strain 85-82H Ivory Coast, complete genome84848484100%0.078%U54798.1Select seq gb|AF094612.1|AF094612Yellow fever virus strain Trinidad 79A isolate 788379, complete genome84248424100%0.078%AF094612.1Select seq gb|JF912181.1|Yellow fever virus strain BeH413820, complete genome84158415100%0.078%JF912181.1Select seq gb|DQ322634.1|YFV replicon vector FMDV-2A-def, complete sequence8215833097%0.078%DQ322634.1Select seq gb|DQ322633.1|YFV replicon vector capsid-def, complete sequence8215833097%0.078%DQ322633.1Select seq gb|DQ322635.1|YFV replicon vector prME-def, complete sequence6538686681%0.078%DQ322635.1Select seq dbj|D14458.1|YFVCMENSYellow fever virus prM gene for precursor polyprotein, partial cds3155315534%0.080%D14458.1Select seq gb|AF052443.1|AF052443Yellow fever virus clone HONG7 polyprotein gene, partial cds2237223726%0.078%AF052443.1Select seq gb|AF052441.1|AF052441Yellow fever virus clone HONG5 polyprotein gene, partial cds2232223226%0.078%AF052441.1Select seq gb|GU951804.1|Yellow fever virus strain BeAn 131 polyprotein gene, partial cds2228222826%0.078%GU951804.1Select seq gb|AH005112.2|Yellow fever virus strain Y5 polyprotein and nonstructural protein NS2A mRNAs, partial cds2127249327%0.080%AH005112.2Select seq gb|AY960140.1|Yellow fever virus strain ArB28153 polyprotein gene, partial cds2125212517%0.086%AY960140.1Select seq gb|DQ322638.1|VEEV replicon vector YFV-C2, complete sequence2118211822%0.080%DQ322638.1Select seq gb|AF052440.1|AF052440Yellow fever virus clone HONG4 polyprotein gene, partial cds2113211322%0.080%AF052440.1Select seq gb|L06480.1|YFVCAPSIDMYellow fever virus capsid protein, M protein, and envelope protein mRNAs2113211322%0.080%L06480.1Select seq gb|DQ322642.1|VEEV replicon vector YFV-C3opt, complete sequence1916191622%0.078%DQ322642.1Select seq gb|DQ322640.1|VEEV replicon vector YFV-C3opt-NS2mut, complete sequence1916191622%0.078%DQ322640.1Select seq gb|U23578.1|YFU23578Yellow fever virus isolate SE7445/Uganda/1964/Human envelope protein (E) mRNA, partial cds1810181014%0.087%U23578.1Select seq gb|U23577.1|YFU23577Yellow fever virus isolate M-112/Sudan/1940/Human envelope protein (E) mRNA, partial cds1801180114%0.087%U23577.1Select seq gb|DQ068260.1|Yellow fever virus strain SSUD03-01 envelope protein gene, partial cds1792179214%0.087%DQ068260.1Select seq gb|DQ068264.1|Yellow fever virus strain SSUD03-05 envelope protein gene, partial cds1786178614%0.087%DQ068264.1Select seq gb|DQ068263.1|Yellow fever virus strain SSUD03-04 envelope protein gene, partial cds1786178614%0.087%DQ068263.1Select seq gb|DQ068262.1|Yellow fever virus strain SSUD03-03 envelope protein gene, partial cds1786178614%0.087%DQ068262.1Select seq gb|AY839636.1|Yellow fever virus strain ETH2777/Ethiopia61 envelope protein gene, partial cds1786178614%0.087%AY839636.1Select seq gb|AY839634.1|Yellow fever virus strain HB1782/CAR86 envelope protein gene, partial cds1777177714%0.087%AY839634.1Select seq gb|U23573.1|YFU23573Yellow fever virus isolate DaHB1504/C. African Republic/1985/Human envelope protein (E) mRNA, partial cds1773177314%0.087%U23573.1Select seq gb|U23569.1|YFU23569Yellow fever virus isolate 7914/Kenya/1993/Human envelope protein (E) mRNA, partial cds1773177314%0.087%U23569.1Select seq gb|U23575.1|YFU23575Yellow fever virus isolate KE93-477/Kenya/1993/Mosquito envelope protein (E) mRNA, partial cds1768176814%0.087%U23575.1Select seq gb|U23571.1|YFU23571Yellow fever virus isolate ArB8883/C. African Republic/1977/Human envelope protein (E) mRNA, partial cds1759175914%0.086%U23571.1Select seq gb|AY960138.1|Yellow fever virus strain ArA 20628 polyprotein gene, partial cds1746174617%0.081%AY960138.1Select seq gb|U23576.1|YFU23576Yellow fever virus isolate Kouma/Ethiopia/1961/Human envelope protein (E) mRNA, partial cds1745174514%0.086%U23576.1Select seq gb|AY960137.1|Yellow fever virus strain Ara29436 polyprotein gene, partial cds1707170717%0.081%AY960137.1Select seq gb|AY960139.1|Yellow fever virus strain Ara6734 polyprotein gene, partial cds1674167417%0.081%AY960139.1 Link to comment Share on other sites More sharing options...
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