niman Posted June 27, 2016 Report Posted June 27, 2016 Utah State has released a full Zika PRVABC-59 sequence. http://www.ncbi.nlm.nih.gov/nuccore/KX377337.1
niman Posted June 27, 2016 Author Report Posted June 27, 2016 LOCUS KX377337 10807 bp RNA linear VRL 22-JUN-2016 DEFINITION Zika virus strain PRVABC-59, complete genome. ACCESSION KX377337 VERSION KX377337.1 GI:1036637434 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10807) AUTHORS Yun,S.-I., Song,B.-H., Frank,J.C., Julander,J.G., Polejaeva,I.A., Davies,C.J., White,K.L. and Lee,Y.-M. TITLE Complete Genome Sequences of Three Historically Important, Spatiotemporally Distinct, and Genetically Divergent Strains of Zika Virus: MR-766, P6-740, and PRVABC-59 JOURNAL Unpublished REFERENCE 2 (bases 1 to 10807) AUTHORS Yun,S.-I., Song,B.-H., Frank,J.C., Julander,J.G., Polejaeva,I.A., Davies,C.J., White,K.L. and Lee,Y.-M. TITLE Direct Submission JOURNAL Submitted (12-JUN-2016) Department of Animal, Dairy, and Veterinary Sciences (ADVS), College of Agriculture and Applied Sciences, Utah State University, UMC 9830 Old Main Hill, Logan, UT 84322, USA COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10807 /organism="Zika virus" /mol_type="genomic RNA" /strain="PRVABC-59" /host="Homo sapiens" /db_xref="taxon:64320" /country="Puerto Rico" /collection_date="Dec-2015" /note="genotype: Asian lineage" CDS 108..10379 /codon_start=1 /product="polyprotein" /protein_id="ANK57897.1" /db_xref="GI:1036637435" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMETIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMGRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYVATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" ORIGIN 1 agttgttgat ctgtgtgaat cagactgcga cagttcgagt ttgaagcgaa agctagcaac 61 agtatcaaca ggttttattt tggatttgga aacgagagtt tctggtcatg aaaaacccaa 121 aaaagaaatc cggaggattc cggattgtca atatgctaaa acgcggagta gcccgtgtga 181 gcccctttgg gggcttgaag aggctgccag ccggacttct gctgggtcat gggcccatca 241 ggatggtctt ggcgattcta gcctttttga gattcacggc aatcaagcca tcactgggtc 301 tcatcaatag atggggttca gtggggaaaa aagaggctat ggaaacaata aagaagttca 361 agaaagatct ggctgccatg ctgagaataa tcaatgctag gaaggagaag aagagacgag 421 gcgcagatac tagtgtcgga attgttggcc tcctgctgac cacagctatg gcagcggagg 481 tcactagacg tgggagtgca tactatatgt acttggacag aaacgatgct ggggaggcca 541 tatcttttcc aaccacattg gggatgaata agtgttatat acagatcatg gatcttggac 601 acatgtgtga tgccaccatg agctatgaat gccctatgct ggatgagggg gtggaaccag 661 atgacgtcga ttgttggtgc aacacgacgt caacttgggt tgtgtacgga acctgccatc 721 acaaaaaagg tgaagcacgg agatctagaa gagctgtgac gctcccctcc cattccacca 781 ggaagctgca aacgcggtcg caaacctggt tggaatcaag agaatacaca aagcacttga 841 ttagagtcga aaattggata ttcaggaacc ctggcttcgc gttagcagca gctgccatcg 901 cttggctttt gggaagctca acgagccaaa aagtcatata cttggtcatg atactgctga 961 ttgccccggc atacagcatc aggtgcatag gagtcagcaa tagggacttt gtggaaggta 1021 tgtcaggtgg gacttgggtt gatgttgtct tggaacatgg aggttgtgtc accgtaatgg 1081 cacaggacaa accgactgtc gacatagagc tggttacaac aacagtcagc aacatggcgg 1141 aggtaagatc ctactgctat gaggcatcaa tatcagacat ggcttctgac agccgctgcc 1201 caacacaagg tgaagcctac cttgacaagc aatcagacac tcaatatgtc tgcaaaagaa 1261 cgttagtgga cagaggctgg ggaaatggat gtggactttt tggcaaaggg agcctggtga 1321 catgcgctaa gtttgcatgc tccaagaaaa tgaccgggaa gagcatccag ccagagaatc 1381 tggagtaccg gataatgctg tcagttcatg gctcccagca cagtgggatg atcgttaatg 1441 acacaggaca tgaaactgat gagaatagag cgaaagttga gataacgccc aattcaccga 1501 gagccgaagc caccctgggg ggttttggaa gcctaggact tgattgtgaa ccgaggacag 1561 gccttgactt ttcagatttg tattacttga ctatgaataa caagcactgg ttggttcaca 1621 aggagtggtt ccacgacatt ccattacctt ggcacgctgg ggcagacacc ggaactccac 1681 actggaacaa caaagaagca ctggtagagt tcaaggacgc acatgccaaa aggcaaactg 1741 tcgtggttct agggagtcaa gaaggagcag ttcacacggc ccttgctgga gctctggagg 1801 ctgagatgga tggtgcaaag ggaaggctgt cctctggcca cttgaaatgt cgcctgaaaa 1861 tggataaact tagattgaag ggcgtgtcat actccttgtg tactgcagcg ttcacattca 1921 ccaagatccc ggctgaaaca ctgcacggga cagtcacagt ggaggtacag tacgcaggga 1981 cagatggacc ttgcaaggtt ccagctcaga tggcggtgga catgcaaact ctgaccccag 2041 ttgggaggtt gataaccgct aaccccgtaa tcactgaaag cactgagaac tctaagatga 2101 tgctggaact tgatccacca tttggggact cttacattgt cataggagtc ggggagaaga 2161 agatcaccca ccactggcac aggagtggca gcaccattgg aaaagcattt gaagccactg 2221 tgagaggtgc caagagaatg gcagtcttgg gagacacagc ctgggacttt ggatcagttg 2281 gaggcgctct caactcattg ggcaagggca tccatcaaat ttttggagca gctttcaaat 2341 cattgtttgg aggaatgtcc tggttctcac aaattctcat tggaacgttg ctgatgtggt 2401 tgggtctgaa cacaaagaat ggatctattt cccttatgtg cttggcctta gggggagtgt 2461 tgatcttctt atccacagcc gtctctgctg atgtggggtg ctcggtggac ttctcaaaga 2521 aggagacgag atgcggtaca ggggtgttcg tctataacga cgttgaagcc tggagggaca 2581 ggtacaagta ccatcctgac tccccccgta gattggcagc agcagtcaag caagcctggg 2641 aagatggtat ctgcgggatc tcctctgttt caagaatgga aaacatcatg tggagatcag 2701 tagaagggga gctcaacgca atcctggaag agaatggagt tcaactgacg gtcgttgtgg 2761 gatctgtaaa aaaccccatg gggagaggtc cacagagatt gcccgtgcct gtgaacgagc 2821 tgccccacgg ctggaaggct tgggggaaat cgtatttcgt cagagcagca aagacaaata 2881 acagctttgt cgtggatggt gacacactga aggaatgccc actcaaacat agagcatgga 2941 acagctttct tgtggaggat catgggttcg gggtatttca cactagtgtc tggctcaagg 3001 ttagagaaga ttattcatta gagtgtgatc cagccgttat tggaacagct gttaagggaa 3061 aggaggctgt acacagtgat ctaggctact ggattgagag tgagaagaat gacacatgga 3121 ggctgaagag ggcccatctg atcgagatga aaacatgtga atggccaaag tcccacacat 3181 tgtggacaga tggaatagaa gagagtgatc tgatcatacc caagtcttta gctgggccac 3241 tcagccatca caataccaga gagggctaca ggacccaaat gaaagggcca tggcacagtg 3301 aagagcttga aattcggttt gaggaatgcc caggcactaa ggtccacgtg gaggaaacat 3361 gtggaacaag aggaccatct ctgagatcaa ccactgcaag cggaagggtg atcgaggaat 3421 ggtgctgcag ggagtgcaca atgcccccac tgtcgttccg ggctaaagat ggctgttggt 3481 atggaatgga gataaggccc aggaaagaac cagaaagcaa cttagtaagg tcaatggtga 3541 ctgcaggatc aactgatcac atggaccact tctcccttgg agtgcttgtg atcctgctca 3601 tggtgcagga agggctgaag aagagaatga ccacaaagat catcataagc acatcaatgg 3661 cagtgctggt agctatgatc ctgggaggat tttcaatgag tgacctggct aagcttgcaa 3721 ttttgatggg tgccaccttc gcggaaatga acactggagg agatgtagct catctggcgc 3781 tgatagcggc attcaaagtc agaccagcgt tgctggtatc tttcatcttc agagctaatt 3841 ggacaccccg tgaaagcatg ctgctggcct tggcctcgtg tcttttgcaa actgcgatct 3901 ccgccttgga aggcgacctg atggttctca tcaatggttt tgctttggcc tggttggcaa 3961 tacgagcgat ggttgttcca cgcactgata acatcacctt ggcaatcctg gctgctctga 4021 caccactggc ccggggcaca ctgcttgtgg cgtggagagc aggccttgct acttgcgggg 4081 ggtttatgct cctctctctg aagggaaaag gcagtgtgaa gaagaactta ccatttgtca 4141 tggccctggg actaaccgct gtgaggctgg tcgaccccat caacgtggtg ggactgctgt 4201 tgctcacaag gagtgggaag cggagctggc cccctagcga agtactcaca gctgttggcc 4261 tgatatgcgc attggctgga gggttcgcca aggcagatat agagatggct gggcccatgg 4321 ccgcggtcgg tctgctaatt gtcagttacg tggtctcagg aaagagtgtg gacatgtaca 4381 ttgaaagagc aggtgacatc acatgggaaa aagatgcgga agtcactgga aacagtcccc 4441 ggctcgatgt ggcgctagat gagagtggtg atttctccct ggtggaggat gacggtcccc 4501 ccatgagaga gatcatactc aaggtggtcc tgatgaccat ctgtggcatg aacccaatag 4561 ccataccctt tgcagctgga gcgtggtacg tatacgtgaa gactggaaaa aggagtggtg 4621 ctctatggga tgtgcctgct cccaaggaag taaaaaaggg ggagaccaca gatggagtgt 4681 acagagtaat gactcgtaga ctgctaggtt caacacaagt tggagtggga gttatgcaag 4741 agggggtctt tcacactatg tggcacgtca caaaaggatc cgcgctgaga agcggtgaag 4801 ggagacttga tccatactgg ggagatgtca agcaggatct ggtgtcatac tgtggtccat 4861 ggaagctaga tgccgcctgg gatgggcaca gcgaggtgca gctcttggcc gtgccccccg 4921 gagagagagc gaggaacatc cagactctgc ccggaatatt taagacaaag gatggggaca 4981 ttggagcggt tgcgctggat tacccagcag gaacttcagg atctccaatc ctagacaagt 5041 gtgggagagt gataggactt tatggcaatg gggtcgtgat caaaaacggg agttatgtta 5101 gtgccatcac ccaagggagg agggaggaag agactcctgt tgagtgcttc gagccctcga 5161 tgctgaagaa gaagcagcta actgtcttag acttgcatcc tggagctggg aaaaccagga 5221 gagttcttcc tgaaatagtc cgtgaagcca taaaaacaag actccgtact gtgatcttag 5281 ctccaaccag ggttgtcgct gctgaaatgg aggaggccct tagagggctt ccagtgcgtt 5341 atatgacaac agcagtcaat gtcacccact ctggaacaga aatcgtcgac ttaatgtgcc 5401 atgccacctt cacttcacgt ctactacagc caatcagagt ccccaactat aatctgtata 5461 ttatggatga ggcccacttc acagatccct caagtatagc agcaagagga tacatttcaa 5521 caagggttga gatgggcgag gcggctgcca tcttcatgac cgccacgcca ccaggaaccc 5581 gtgacgcatt tccggactcc aactcaccaa ttatggacac cgaagtggaa gtcccagaga 5641 gagcctggag ctcaggcttt gattgggtga cggatcattc tggaaaaaca gtttggtttg 5701 ttccaagcgt gaggaacggc aatgagatcg cagcttgtct gacaaaggct ggaaaacggg 5761 tcatacagct cagcagaaag acttttgaga cagagttcca gaaaacaaaa catcaagagt 5821 gggactttgt cgtgacaact gacatttcag agatgggcgc caactttaaa gctgaccgtg 5881 tcatagattc caggagatgc ctaaagccgg tcatacttga tggcgagaga gtcattctgg 5941 ctggacccat gcctgtcaca catgccagcg ctgcccagag gagggggcgc ataggcagga 6001 atcccaacaa acctggagat gagtatctgt atggaggtgg gtgcgcagag actgacgaag 6061 accatgcaca ctggcttgaa gcaagaatgc tccttgacaa tatttacctc caagatggcc 6121 tcatagcctc gctctatcga cctgaggccg acaaagtagc agccattgag ggagagttca 6181 agcttaggac ggagcaaagg aagacctttg tggaactcat gaaaagagga gatcttcctg 6241 tttggctggc ctatcaggtt gcatctgccg gaataaccta cacagataga agatggtgct 6301 ttgatggcac gaccaacaac accataatgg aagacagtgt gccggcagag gtgtggacca 6361 gacacggaga gaaaagagtg ctcaaaccga ggtggatgga cgccagagtt tgttcagatc 6421 atgcggccct gaagtcattc aaggagtttg ccgctgggaa aagaggagcg gcttttggag 6481 tgatggaagc cctgggaaca ctgccaggac acatgacaga gagattccag gaagccattg 6541 acaacctcgc tgtgctcatg cgggcagaga ctggaagcag gccttacaaa gccgcggcgg 6601 cccaattgcc ggagacccta gagaccataa tgcttttggg gttgctggga acagtctcgc 6661 tgggaatctt cttcgtcttg atgaggaaca agggcatagg gaagatgggc tttggaatgg 6721 tgactcttgg ggccagcgca tggctcatgt ggctctcgga aattgagcca gccagaattg 6781 catgtgtcct cattgttgtg ttcctattgc tggtggtgct catacctgag ccagaaaagc 6841 aaagatctcc ccaggacaac caaatggcaa tcatcatcat ggtagcagta ggtcttctgg 6901 gcttgattac cgccaatgaa ctcggatggt tggagagaac aaagagtgac ctaagccatc 6961 taatgggaag gagagaggag ggggcaacca taggattctc aatggacatt gacctgcggc 7021 cagcctcagc ttgggccatc tatgctgcct tgacaacttt cattacccca gccgtccaac 7081 atgcagtgac cacctcatac aacaactact ccttaatggc gatggccacg caagctggag 7141 tgttgtttgg catgggcaaa gggatgccat tctacgcatg ggactttgga gtcccgctgc 7201 taatgatagg ttgctactca caattaacac ccctgaccct aatagtggcc atcattttgc 7261 tcgtggcgca ctacatgtac ttgatcccag ggctgcaggc agcagctgcg cgtgctgccc 7321 agaagagaac ggcagctggc atcatgaaga accctgttgt ggatggaata gtggtgactg 7381 acattgacac aatgacaatt gacccccaag tggagaaaaa gatgggacag gtgctactca 7441 tagcagtagc cgtctccagc gccatactgt cgcggaccgc ctgggggtgg ggggaggctg 7501 gggctctgat cacagccgca acttccactt tgtgggaagg ctctccgaac aagtactgga 7561 actcctctac agccacttca ctgtgtaaca tttttagggg aagttacttg gctggagctt 7621 ctctaatcta cacagtaaca agaaacgctg gcttggtcaa gagacgtggg ggtggaacag 7681 gagagaccct gggagagaaa tggaaggccc gcttgaacca gatgtcggcc ctggagttct 7741 actcctacaa aaagtcaggc atcaccgagg tgtgcagaga agaggcccgc cgcgccctca 7801 aggacggtgt ggcaacggga ggccatgctg tgtcccgagg aagtgcaaag ctgagatggt 7861 tggtggagcg gggatacctg cagccctatg gaaaggtcat tgatcttgga tgtggcagag 7921 ggggctggag ttactacgtc gccaccatcc gcaaagttca agaagtgaaa ggatacacaa 7981 aaggaggccc tggtcatgaa gaacccgtgt tggtgcaaag ctatgggtgg aacatagtcc 8041 gtcttaagag tggggtggac gtctttcata tggcggctga gccgtgtgac acgttgctgt 8101 gtgacatagg tgagtcatca tctagtcctg aagtggaaga agcacggacg ctcagagtcc 8161 tctccatggt gggggattgg cttgaaaaaa gaccaggagc cttttgtata aaagtgttgt 8221 gcccatacac cagcactatg atggaaaccc tggagcgact gcagcgtagg tatgggggag 8281 gattggtcag agtgccactc tcccgcaact ctacacatga gatgtactgg gtctctggag 8341 cgaaaagcaa caccataaaa agtgtgtcca ccacgagcca gctcctcttg gggcgcatgg 8401 acgggcctag gaggccagtg aaatatgagg aggatgtgaa tctcggctct ggcacgcggg 8461 ctgtggtaag ctgcgctgaa gctcccaaca tgaagatcat tggtaaccgc attgaaagga 8521 tccgcagtga gcacgcggaa acgtggttct ttgacgagaa ccacccatat aggacatggg 8581 cttaccatgg aagctatgag gcccccacac aagggtcagc gtcctctcta ataaacgggg 8641 ttgtcaggct cctgtcaaaa ccctgggatg tggtgactgg agtcacagga atagccatga 8701 ccgacaccac accgtatggt cagcaaagag ttttcaagga aaaagtggac actagggtgc 8761 cagaccccca agaaggcact cgtcaggtta tgagcatggt ctcttcctgg ttgtggaaag 8821 agctaggcaa acacaaacgg ccacgagtct gcaccaaaga agagttcatc aacaaggttc 8881 gtagcaatgc agcattaggg gcaatatttg aagaggaaaa agagtggaag actgcagtgg 8941 aagctgtgaa cgatccaagg ttctgggctc tagtggacaa ggaaagagag caccacctga 9001 gaggagagtg ccagagctgt gtgtacaaca tgatgggaaa aagagaaaag aaacaagggg 9061 aatttggaaa ggccaagggc agccgcgcca tctggtatat gtggctaggg gctagatttc 9121 tagagttcga agcccttgga ttcttgaacg aggatcactg gatggggaga gagaactcag 9181 gaggtggtgt tgaagggctg ggattacaaa gactcggata tgtcctagaa gagatgagtc 9241 gtataccagg aggaaggatg tatgcagatg acactgctgg ctgggacacc cgcattagca 9301 ggtttgatct ggagaatgaa gctctaatca ccaaccaaat ggagaaaggg cacagggcct 9361 tggcattggc cataatcaag tacacatacc aaaacaaagt ggtaaaggtc cttagaccag 9421 ctgaaaaagg gaaaacagtt atggacatta tttcgagaca agaccaaagg gggagcggac 9481 aagttgtcac ttacgctctt aacacattta ccaacctagt ggtgcaactc attcggaata 9541 tggaggctga ggaagttcta gagatgcaag acttgtggct gctgcggagg tcagagaaag 9601 tgaccaactg gttgcagagc aacggatggg ataggctcaa acgaatggca gtcagtggag 9661 atgattgcgt tgtgaagcca attgatgata ggtttgcaca tgccctcagg ttcttgaatg 9721 atatgggaaa agttaggaag gacacacaag agtggaaacc ctcaactgga tgggacaact 9781 gggaagaagt tccgttttgc tcccaccact tcaacaagct ccatctcaag gacgggaggt 9841 ccattgtggt tccctgccgc caccaagatg aactgattgg ccgggcccgc gtctctccag 9901 gggcgggatg gagcatccgg gagactgctt gcctagcaaa atcatatgcg caaatgtggc 9961 agctccttta tttccacaga agggacctcc gactgatggc caatgccatt tgttcatctg 10021 tgccagttga ctgggttcca actgggagaa ctacctggtc aatccatgga aagggagaat 10081 ggatgaccac tgaagacatg cttgtggtgt ggaacagagt gtggattgag gagaacgacc 10141 acatggaaga caagacccca gttacgaaat ggacagacat tccctatttg ggaaaaaggg 10201 aagacttgtg gtgtggatct ctcatagggc acagaccgcg caccacctgg gctgagaaca 10261 ttaaaaacac agtcaacatg gtgcgcagga tcataggtga tgaagaaaag tacatggact 10321 acctatccac ccaagttcgc tacttgggtg aagaagggtc tacacctgga gtgctgtaag 10381 caccaatctt aatgttgtca ggcctgctag tcagccacag cttggggaaa gctgtgcagc 10441 ctgtgacccc cccaggagaa gctgggaaac caagcctata gtcaggccga gaacgccatg 10501 gcacggaaga agccatgctg cctgtgagcc cctcagagga cactgagtca aaaaacccca 10561 cgcgcttgga ggcgcaggat gggaaaagaa ggtggcgacc ttccccaccc ttcaatctgg 10621 ggcctgaact ggagatcagc tgtggatctc cagaagaggg actagtggtt agaggagacc 10681 ccccggaaaa cgcaaaacag catattgacg ctgggaaaga ccagagactc catgagtttc 10741 caccacgctg gccgccaggc acagatcgcc gaatagcggc ggccggtgtg gggaaatcca 10801 tgggtct
niman Posted June 27, 2016 Author Report Posted June 27, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX377337.1|Zika virus strain PRVABC-59, complete genome1865118651100%0.0100%KX377337.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1864218642100%0.099%KU501215.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1863718637100%0.099%KX087101.2Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1854318543100%0.099%KU365778.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1853418534100%0.099%KU937936.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1852918529100%0.099%KU365779.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1852118521100%0.099%KU707826.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1851618516100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1851118511100%0.099%KU365777.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds184981849899%0.099%KU758877.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1848918489100%0.099%KU509998.3Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome1848418484100%0.099%KX280026.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1848418484100%0.099%KU991811.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome1848018480100%0.099%KX262887.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1848018480100%0.099%KX051563.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1847618476100%0.099%KU321639.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds184741847499%0.099%KU740184.2Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1847418474100%0.099%KU729218.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1847118471100%0.099%KX198135.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1847118471100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1847118471100%0.099%KU926309.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome1846218462100%0.099%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds1846218462100%0.099%KX247632.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds184621846299%0.099%KU312312.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1845818458100%0.099%KU940228.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1845318453100%0.099%KX087102.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds184511845199%0.099%KJ776791.1Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds184491844999%0.099%KU761564.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome184491844999%0.099%KU497555.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1844718447100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1844718447100%0.099%KU527068.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds1844418444100%0.099%KU820897.3Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome184441844499%0.099%KX156774.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1843818438100%0.099%KU870645.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds184371843799%0.099%KU955590.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1843518435100%0.099%KU926310.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome184311843199%0.099%KX156776.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1842618426100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1842418424100%0.099%KU853012.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome184221842299%0.099%KX156775.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds184151841599%0.099%KU647676.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1840218402100%0.099%KX117076.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome183971839799%0.099%KU922960.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome183931839399%0.099%KU922923.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome1839018390100%0.099%KX253996.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1839018390100%0.099%KU820899.2Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds183721837299%0.099%KU963796.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds183721837299%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds183661836699%0.099%KX056898.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds183361833699%0.099%KU955589.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds183361833699%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds183301833099%0.099%KU501216.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds182671826799%0.099%KX185891.1Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds182581825899%0.099%KU866423.2Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1825118251100%0.099%KU744693.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182451824598%0.099%KU940224.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1815918159100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1785817858100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177301773099%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176791767998%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds175761757699%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1755117551100%0.098%KU681082.3Select seq gb|KX377336.1|Zika virus strain P6-740, complete genome1653616536100%0.095%KX377336.1Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164151641599%0.095%HQ234499.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1343613436100%0.089%KU720415.1Select seq gb|KX377335.1|Zika virus strain MR-766, complete genome1342113421100%0.089%KX377335.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1342013420100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1341613416100%0.089%KF268948.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1341213412100%0.089%LC002520.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1340913409100%0.089%KU955595.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1340913409100%0.089%KF268950.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1340013400100%0.089%KU955592.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1339613396100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1339613396100%0.089%KU955594.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1338213382100%0.089%KU955591.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome133661385499%0.089%KX198134.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1335513355100%0.089%AY632535.2Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133291332999%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds133201332099%0.089%KF383115.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds133081330899%0.089%KF383119.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds132611326199%0.089%KF383116.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds132561336399%0.088%KU963574.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds132521325299%0.089%DQ859059.1Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132361323699%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds132001320099%0.088%KF383117.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131711317199%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds129941306299%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129061290696%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108711087196%0.084%KF383120.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds5115511527%0.099%KU758871.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds5113511327%0.099%KU758875.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds5108510827%0.099%KU758870.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds5106510627%0.099%KU758873.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds5093509327%0.099%KU758872.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds5083508327%0.099%KU758876.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds5063506327%0.099%KU312314.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds5054505427%0.099%KU758869.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds5038503827%0.099%KU312313.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds5029502927%0.099%KU758868.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds5023502327%0.099%KU758874.1
niman Posted June 27, 2016 Author Report Posted June 27, 2016 Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU
niman Posted June 27, 2016 Author Report Posted June 27, 2016 LOCUS KX087101 10771 bp ss-RNA linear VRL 12-MAY-2016 DEFINITION Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome. ACCESSION KX087101 VERSION KX087101.2 GI:1027485270 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10771) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Stockwell,T., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (18-APR-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA REFERENCE 2 (bases 1 to 10771) AUTHORS Shabman,R., Shilts,M., Puri,V., Dilley,K., Fedorova,N., Shrivastava,S., Amedeo,P., Williams,M., Hu,L., Das,S.R. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (12-MAY-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA REMARK Sequence update by submitter COMMENT On May 12, 2016 this sequence version replaced gi:1020267435. This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 245.4x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10771 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Homo sapiens/PRI/PRVABC59/2015" /isolate="V3/V2" /host="Homo sapiens" /db_xref="BEI:NR-50240" /db_xref="taxon:64320" /lab_host="Cercopithecus aethiops kidney epithelial cells" /country="Puerto Rico" /collection_date="Dec-2015" /note="passage details: V3/V2 (CDC/BEI); V# = number of passages in Vero cells" misc_feature 1..10771 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00005.MAIN" gene 80..10351 /gene="GP1" /locus_tag="A2G93_63481gpGP1" CDS 80..10351 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /codon_start=1 /product="genome polyprotein" /protein_id="AMZ03556.1" /db_xref="GI:1020267436" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMETIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVELQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYVATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 80..391 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 446..724 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="protein pr" mat_peptide 725..949 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 950..2461 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="envelope protein E" mat_peptide 2462..3517 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS1" mat_peptide 3518..4195 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS2A" mat_peptide 4196..4585 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS2B" mat_peptide 4586..6436 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS3" mat_peptide 6437..6817 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS4A" mat_peptide 6818..6886 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="protein 2K" mat_peptide 6887..7639 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="nonstructural protein NS4B" mat_peptide 7640..10348 /gene="GP1" /locus_tag="A2G93_63481gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 gacagttcga gtttgaagcg aaagctagca acagtatcaa caggttttat tttggatttg 61 gaaacgagag tttctggtca tgaaaaaccc aaaaaagaaa tccggaggat tccggattgt 121 caatatgcta aaacgcggag tagcccgtgt gagccccttt gggggcttga agaggctgcc 181 agccggactt ctgctgggtc atgggcccat caggatggtc ttggcgattc tagccttttt 241 gagattcacg gcaatcaagc catcactggg tctcatcaat agatggggtt cagtggggaa 301 aaaagaggct atggaaacaa taaagaagtt caagaaagat ctggctgcca tgctgagaat 361 aatcaatgct aggaaggaga agaagagacg aggcgcagat actagtgtcg gaattgttgg 421 cctcctgctg accacagcta tggcagcgga ggtcactaga cgtgggagtg catactatat 481 gtacttggac agaaacgatg ctggggaggc catatctttt ccaaccacat tggggatgaa 541 taagtgttat atacagatca tggatcttgg acacatgtgt gatgccacca tgagctatga 601 atgccctatg ctggatgagg gggtggaacc agatgacgtc gattgttggt gcaacacgac 661 gtcaacttgg gttgtgtacg gaacctgcca tcacaaaaaa ggtgaagcac ggagatctag 721 aagagctgtg acgctcccct cccattccac caggaagctg caaacgcggt cgcaaacctg 781 gttggaatca agagaataca caaagcactt gattagagtc gaaaattgga tattcaggaa 841 ccctggcttc gcgttagcag cagctgccat cgcttggctt ttgggaagct caacgagcca 901 aaaagtcata tacttggtca tgatactgct gattgccccg gcatacagca tcaggtgcat 961 aggagtcagc aatagggact ttgtggaagg tatgtcaggt gggacttggg ttgatgttgt 1021 cttggaacat ggaggttgtg tcaccgtaat ggcacaggac aaaccgactg tcgacataga 1081 gctggttaca acaacagtca gcaacatggc ggaggtaaga tcctactgct atgaggcatc 1141 aatatcagac atggcttctg acagccgctg cccaacacaa ggtgaagcct accttgacaa 1201 gcaatcagac actcaatatg tctgcaaaag aacgttagtg gacagaggct ggggaaatgg 1261 atgtggactt tttggcaaag ggagcctggt gacatgcgct aagtttgcat gctccaagaa 1321 aatgaccggg aagagcatcc agccagagaa tctggagtac cggataatgc tgtcagttca 1381 tggctcccag cacagtggga tgatcgttaa tgacacagga catgaaactg atgagaatag 1441 agcgaaagtt gagataacgc ccaattcacc gagagccgaa gccaccctgg ggggttttgg 1501 aagcctagga cttgattgtg aaccgaggac aggccttgac ttttcagatt tgtattactt 1561 gactatgaat aacaagcact ggttggttca caaggagtgg ttccacgaca ttccattacc 1621 ttggcacgct ggggcagaca ccggaactcc acactggaac aacaaagaag cactggtaga 1681 gttcaaggac gcacatgcca aaaggcaaac tgtcgtggtt ctagggagtc aagaaggagc 1741 agttcacacg gcccttgctg gagctctgga ggctgagatg gatggtgcaa agggaaggct 1801 gtcctctggc cacttgaaat gtcgcctgaa aatggataaa cttagattga agggcgtgtc 1861 atactccttg tgtactgcag cgttcacatt caccaagatc ccggctgaaa cactgcacgg 1921 gacagtcaca gtggagttac agtacgcagg gacagatgga ccttgcaagg ttccagctca 1981 gatggcggtg gacatgcaaa ctctgacccc agttgggagg ttgataaccg ctaaccccgt 2041 aatcactgaa agcactgaga actctaagat gatgctggaa cttgatccac catttgggga 2101 ctcttacatt gtcataggag tcggggagaa gaagatcacc caccactggc acaggagtgg 2161 cagcaccatt ggaaaagcat ttgaagccac tgtgagaggt gccaagagaa tggcagtctt 2221 gggagacaca gcctgggact ttggatcagt tggaggcgct ctcaactcat tgggcaaggg 2281 catccatcaa atttttggag cagctttcaa atcattgttt ggaggaatgt cctggttctc 2341 acaaattctc attggaacgt tgctgatgtg gttgggtctg aacacaaaga atggatctat 2401 ttcccttatg tgcttggcct tagggggagt gttgatcttc ttatccacag ccgtctctgc 2461 tgatgtgggg tgctcggtgg acttctcaaa gaaggagacg agatgcggta caggggtgtt 2521 cgtctataac gacgttgaag cctggaggga caggtacaag taccatcctg actccccccg 2581 tagattggca gcagcagtca agcaagcctg ggaagatggt atctgcggga tctcctctgt 2641 ttcaagaatg gaaaacatca tgtggagatc agtagaaggg gagctcaacg caatcctgga 2701 agagaatgga gttcaactga cggtcgttgt gggatctgta aaaaacccca tgtggagagg 2761 tccacagaga ttgcccgtgc ctgtgaacga gctgccccac ggctggaagg cttgggggaa 2821 atcgtatttc gtcagagcag caaagacaaa taacagcttt gtcgtggatg gtgacacact 2881 gaaggaatgc ccactcaaac atagagcatg gaacagcttt cttgtggagg atcatgggtt 2941 cggggtattt cacactagtg tctggctcaa ggttagagaa gattattcat tagagtgtga 3001 tccagccgtt attggaacag ctgttaaggg aaaggaggct gtacacagtg atctaggcta 3061 ctggattgag agtgagaaga atgacacatg gaggctgaag agggcccatc tgatcgagat 3121 gaaaacatgt gaatggccaa agtcccacac attgtggaca gatggaatag aagagagtga 3181 tctgatcata cccaagtctt tagctgggcc actcagccat cacaatacca gagagggcta 3241 caggacccaa atgaaagggc catggcacag tgaagagctt gaaattcggt ttgaggaatg 3301 cccaggcact aaggtccacg tggaggaaac atgtggaaca agaggaccat ctctgagatc 3361 aaccactgca agcggaaggg tgatcgagga atggtgctgc agggagtgca caatgccccc 3421 actgtcgttc cgggctaaag atggctgttg gtatggaatg gagataaggc ccaggaaaga 3481 accagaaagc aacttagtaa ggtcaatggt gactgcagga tcaactgatc acatggacca 3541 cttctccctt ggagtgcttg tgatcctgct catggtgcag gaagggctga agaagagaat 3601 gaccacaaag atcatcataa gcacatcaat ggcagtgctg gtagctatga tcctgggagg 3661 attttcaatg agtgacctgg ctaagcttgc aattttgatg ggtgccacct tcgcggaaat 3721 gaacactgga ggagatgtag ctcatctggc gctgatagcg gcattcaaag tcagaccagc 3781 gttgctggta tctttcatct tcagagctaa ttggacaccc cgtgaaagca tgctgctggc 3841 cttggcctcg tgtcttttgc aaactgcgat ctccgccttg gaaggcgacc tgatggttct 3901 catcaatggt tttgctttgg cctggttggc aatacgagcg atggttgttc cacgcactga 3961 taacatcacc ttggcaatcc tggctgctct gacaccactg gcccggggca cactgcttgt 4021 ggcgtggaga gcaggccttg ctacttgcgg ggggtttatg ctcctctctc tgaagggaaa 4081 aggcagtgtg aagaagaact taccatttgt catggccctg ggactaaccg ctgtgaggct 4141 ggtcgacccc atcaacgtgg tgggactgct gttgctcaca aggagtggga agcggagctg 4201 gccccctagc gaagtactca cagctgttgg cctgatatgc gcattggctg gagggttcgc 4261 caaggcagat atagagatgg ctgggcccat ggccgcggtc ggtctgctaa ttgtcagtta 4321 cgtggtctca ggaaagagtg tggacatgta cattgaaaga gcaggtgaca tcacatggga 4381 aaaagatgcg gaagtcactg gaaacagtcc ccggctcgat gtggcgctag atgagagtgg 4441 tgatttctcc ctggtggagg atgacggtcc ccccatgaga gagatcatac tcaaggtggt 4501 cctgatgacc atctgtggca tgaacccaat agccataccc tttgcagctg gagcgtggta 4561 cgtatacgtg aagactggaa aaaggagtgg tgctctatgg gatgtgcctg ctcccaagga 4621 agtaaaaaag ggggagacca cagatggagt gtacagagta atgactcgta gactgctagg 4681 ttcaacacaa gttggagtgg gagttatgca agagggggtc tttcacacta tgtggcacgt 4741 cacaaaagga tccgcgctga gaagcggtga agggagactt gatccatact ggggagatgt 4801 caagcaggat ctggtgtcat actgtggtcc atggaagcta gatgccgcct gggatgggca 4861 cagcgaggtg cagctcttgg ccgtgccccc cggagagaga gcgaggaaca tccagactct 4921 gcccggaata tttaagacaa aggatgggga cattggagcg gttgcgctgg attacccagc 4981 aggaacttca ggatctccaa tcctagacaa gtgtgggaga gtgataggac tttatggcaa 5041 tggggtcgtg atcaaaaacg ggagttatgt tagtgccatc acccaaggga ggagggagga 5101 agagactcct gttgagtgct tcgagccctc gatgctgaag aagaagcagc taactgtctt 5161 agacttgcat cctggagctg ggaaaaccag gagagttctt cctgaaatag tccgtgaagc 5221 cataaaaaca agactccgta ctgtgatctt agctccaacc agggttgtcg ctgctgaaat 5281 ggaggaggcc cttagagggc ttccagtgcg ttatatgaca acagcagtca atgtcaccca 5341 ctctggaaca gaaatcgtcg acttaatgtg ccatgccacc ttcacttcac gtctactaca 5401 gccaatcaga gtccccaact ataatctgta tattatggat gaggcccact tcacagatcc 5461 ctcaagtata gcagcaagag gatacatttc aacaagggtt gagatgggcg aggcggctgc 5521 catcttcatg accgccacgc caccaggaac ccgtgacgca tttccggact ccaactcacc 5581 aattatggac accgaagtgg aagtcccaga gagagcctgg agctcaggct ttgattgggt 5641 gacggatcat tctggaaaaa cagtttggtt tgttccaagc gtgaggaacg gcaatgagat 5701 cgcagcttgt ctgacaaagg ctggaaaacg ggtcatacag ctcagcagaa agacttttga 5761 gacagagttc cagaaaacaa aacatcaaga gtgggacttt gtcgtgacaa ctgacatttc 5821 agagatgggc gccaacttta aagctgaccg tgtcatagat tccaggagat gcctaaagcc 5881 ggtcatactt gatggcgaga gagtcattct ggctggaccc atgcctgtca cacatgccag 5941 cgctgcccag aggagggggc gcataggcag gaatcccaac aaacctggag atgagtatct 6001 gtatggaggt gggtgcgcag agactgacga agaccatgca cactggcttg aagcaagaat 6061 gctccttgac aatatttacc tccaagatgg cctcatagcc tcgctctatc gacctgaggc 6121 cgacaaagta gcagccattg agggagagtt caagcttagg acggagcaaa ggaagacctt 6181 tgtggaactc atgaaaagag gagatcttcc tgtttggctg gcctatcagg ttgcatctgc 6241 cggaataacc tacacagata gaagatggtg ctttgatggc acgaccaaca acaccataat 6301 ggaagacagt gtgccggcag aggtgtggac cagacacgga gagaaaagag tgctcaaacc 6361 gaggtggatg gacgccagag tttgttcaga tcatgcggcc ctgaagtcat tcaaggagtt 6421 tgccgctggg aaaagaggag cggcttttgg agtgatggaa gccctgggaa cactgccagg 6481 acacatgaca gagagattcc aggaagccat tgacaacctc gctgtgctca tgcgggcaga 6541 gactggaagc aggccttaca aagccgcggc ggcccaattg ccggagaccc tagagaccat 6601 aatgcttttg gggttgctgg gaacagtctc gctgggaatc ttcttcgtct tgatgaggaa 6661 caagggcata gggaagatgg gctttggaat ggtgactctt ggggccagcg catggctcat 6721 gtggctctcg gaaattgagc cagccagaat tgcatgtgtc ctcattgttg tgttcctatt 6781 gctggtggtg ctcatacctg agccagaaaa gcaaagatct ccccaggaca accaaatggc 6841 aatcatcatc atggtagcag taggtcttct gggcttgatt accgccaatg aactcggatg 6901 gttggagaga acaaagagtg acctaagcca tctaatggga aggagagagg agggggcaac 6961 cataggattc tcaatggaca ttgacctgcg gccagcctca gcttgggcca tctatgctgc 7021 cttgacaact ttcattaccc cagccgtcca acatgcagtg accacctcat acaacaacta 7081 ctccttaatg gcgatggcca cgcaagctgg agtgttgttt ggcatgggca aagggatgcc 7141 attctacgca tgggactttg gagtcccgct gctaatgata ggttgctact cacaattaac 7201 acccctgacc ctaatagtgg ccatcatttt gctcgtggcg cactacatgt acttgatccc 7261 agggctgcag gcagcagctg cgcgtgctgc ccagaagaga acggcagctg gcatcatgaa 7321 gaaccctgtt gtggatggaa tagtggtgac tgacattgac acaatgacaa ttgaccccca 7381 agtggagaaa aagatgggac aggtgctact catagcagta gccgtctcca gcgccatact 7441 gtcgcggacc gcctgggggt ggggggaggc tggggctctg atcacagccg caacttccac 7501 tttgtgggaa ggctctccga acaagtactg gaactcctct acagccactt cactgtgtaa 7561 catttttagg ggaagttact tggctggagc ttctctaatc tacacagtaa caagaaacgc 7621 tggcttggtc aagagacgtg ggggtggaac aggagagacc ctgggagaga aatggaaggc 7681 ccgcttgaac cagatgtcgg ccctggagtt ctactcctac aaaaagtcag gcatcaccga 7741 ggtgtgcaga gaagaggccc gccgcgccct caaggacggt gtggcaacgg gaggccatgc 7801 tgtgtcccga ggaagtgcaa agctgagatg gttggtggag cggggatacc tgcagcccta 7861 tggaaaggtc attgatcttg gatgtggcag agggggctgg agttactacg tcgccaccat 7921 ccgcaaagtt caagaagtga aaggatacac aaaaggaggc cctggtcatg aagaacccgt 7981 gttggtgcaa agctatgggt ggaacatagt ccgtcttaag agtggggtgg acgtctttca 8041 tatggcggct gagccgtgtg acacgttgct gtgtgacata ggtgagtcat catctagtcc 8101 tgaagtggaa gaagcacgga cgctcagagt cctctccatg gtgggggatt ggcttgaaaa 8161 aagaccagga gccttttgta taaaagtgtt gtgcccatac accagcacta tgatggaaac 8221 cctggagcga ctgcagcgta ggtatggggg aggactggtc agagtgccac tctcccgcaa 8281 ctctacacat gagatgtact gggtctctgg agcgaaaagc aacaccataa aaagtgtgtc 8341 caccacgagc cagctcctct tggggcgcat ggacgggcct aggaggccag tgaaatatga 8401 ggaggatgtg aatctcggct ctggcacgcg ggctgtggta agctgcgctg aagctcccaa 8461 catgaagatc attggtaacc gcattgaaag gatccgcagt gagcacgcgg aaacgtggtt 8521 ctttgacgag aaccacccat ataggacatg ggcttaccat ggaagctatg aggcccccac 8581 acaagggtca gcgtcctctc taataaacgg ggttgtcagg ctcctgtcaa aaccctggga 8641 tgtggtgact ggagtcacag gaatagccat gaccgacacc acaccgtatg gtcagcaaag 8701 agttttcaag gaaaaagtgg acactagggt gccagacccc caagaaggca ctcgtcaggt 8761 tatgagcatg gtctcttcct ggttgtggaa agagctaggc aaacacaaac ggccacgagt 8821 ctgcaccaaa gaagagttca tcaacaaggt tcgtagcaat gcagcattag gggcaatatt 8881 tgaagaggaa aaagagtgga agactgcagt ggaagctgtg aacgatccaa ggttctgggc 8941 tctagtggac aaggaaagag agcaccacct gagaggagag tgccagagct gtgtgtacaa 9001 catgatggga aaaagagaaa agaaacaagg ggaatttgga aaggccaagg gcagccgcgc 9061 catctggtat atgtggctag gggctagatt tctagagttc gaagcccttg gattcttgaa 9121 cgaggatcac tggatgggga gagagaactc aggaggtggt gttgaagggc tgggattaca 9181 aagactcgga tatgtcctag aagagatgag tcgtatacca ggaggaagga tgtatgcaga 9241 tgacactgct ggctgggaca cccgcattag caggtttgat ctggagaatg aagctctaat 9301 caccaaccaa atggagaaag ggcacagggc cttggcattg gccataatca agtacacata 9361 ccaaaacaaa gtggtaaagg tccttagacc agctgaaaaa gggaaaacag ttatggacat 9421 tatttcgaga caagaccaaa gggggagcgg acaagttgtc acttacgctc ttaacacatt 9481 taccaaccta gtggtgcaac tcattcggaa tatggaggct gaggaagttc tagagatgca 9541 agacttgtgg ctgctgcgga ggtcagagaa agtgaccaac tggttgcaga gcaacggatg 9601 ggataggctc aaacgaatgg cagtcagtgg agatgattgc gttgtgaagc caattgatga 9661 taggtttgca catgccctca ggttcttgaa tgatatggga aaagttagga aggacacaca 9721 agagtggaaa ccctcaactg gatgggacaa ctgggaagaa gttccgtttt gctcccacca 9781 cttcaacaag ctccatctca aggacgggag gtccattgtg gttccctgcc gccaccaaga 9841 tgaactgatt ggccgggccc gcgtctctcc aggggcggga tggagcatcc gggagactgc 9901 ttgcctagca aaatcatatg cgcaaatgtg gcagctcctt tatttccaca gaagggacct 9961 ccgactgatg gccaatgcca tttgttcatc tgtgccagtt gactgggttc caactgggag 10021 aactacctgg tcaatccatg gaaagggaga atggatgacc actgaagaca tgcttgtggt 10081 gtggaacaga gtgtggattg aggagaacga ccacatggaa gacaagaccc cagttacgaa 10141 atggacagac attccctatt tgggaaaaag ggaagacttg tggtgtggat ctctcatagg 10201 gcacagaccg cgcaccacct gggctgagaa cattaaaaac acagtcaaca tggtgcgcag 10261 gatcataggt gatgaagaaa agtacatgga ctacctatcc acccaagttc gctacttggg 10321 tgaagaaggg tctacacctg gagtgctgta agcaccaatc ttaatgttgt caggcctgct 10381 agtcagccac agcttgggga aagctgtgca gcctgtgacc cccccaggag aagctgggaa 10441 accaagccta tagtcaggcc gagaacgcca tggcacggaa gaagccatgc tgcctgtgag 10501 cccctcagag gacactgagt caaaaaaccc cacgcgcttg gaggcgcagg atgggaaaag 10561 aaggtggcga ccttccccac ccttcaatct ggggcctgaa ctggagatca gctgtggatc 10621 tccagaagag ggactagtgg ttagaggaga ccccccggaa aacgcaaaac agcatattga 10681 cgctgggaaa gaccagagac tccatgagtt tccaccacgc tggccgccag gcacagatcg 10741 ccgaatagcg gcggccggtg tggggaaatc c
niman Posted June 27, 2016 Author Report Posted June 27, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1852518525100%0.0100%KX087101.2Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1852018520100%0.099%KU501215.1Select seq gb|KX377337.1|Zika virus strain PRVABC-59, complete genome1851118511100%0.099%KX377337.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds1842918429100%0.099%KU758877.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1842018420100%0.099%KU365778.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1841118411100%0.099%KU937936.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1840818408100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1840818408100%0.099%KU365779.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1839318393100%0.099%KU365780.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1839318393100%0.099%KU312312.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1839018390100%0.099%KU365777.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1837518375100%0.099%KU509998.3Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1837518375100%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1837218372100%0.099%KX056898.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1837218372100%0.099%KJ776791.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1836618366100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1836618366100%0.099%KU761564.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome1836318363100%0.099%KX280026.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1836318363100%0.099%KU991811.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1836318363100%0.099%KU955590.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1836318363100%0.099%KU321639.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome1835718357100%0.099%KX262887.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1835718357100%0.099%KX051563.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1835418354100%0.099%KU729218.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1834818348100%0.099%KX198135.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1834818348100%0.099%KX197192.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1834818348100%0.099%KU926309.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1834518345100%0.099%KU940228.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome1833918339100%0.099%KX247646.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds1833918339100%0.099%KX247632.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1833918339100%0.099%KX156776.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1833918339100%0.099%KU501217.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1833618336100%0.099%KX156774.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1833618336100%0.099%KU647676.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1833618336100%0.099%KU501216.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds1833018330100%0.099%KU820897.3Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1833018330100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1833018330100%0.099%KX087102.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1832718327100%0.099%KU729217.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183271832799%0.099%KU497555.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1832718327100%0.099%KU527068.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1831818318100%0.099%KU870645.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1831818318100%0.099%KU922960.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1831218312100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1831218312100%0.099%KU922923.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1830318303100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1830318303100%0.099%KU853012.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1828218282100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1827318273100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1827318273100%0.099%KU963796.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome1826718267100%0.099%KX253996.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1826718267100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1826718267100%0.099%KU820899.2Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds1826418264100%0.099%KU866423.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182491824999%0.099%KU940224.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1813718137100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1803818038100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1773517735100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177351773599%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176851768598%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1758017580100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1742917429100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164201642099%0.095%HQ234499.1Select seq gb|KX377336.1|Zika virus strain P6-740, complete genome1641516415100%0.095%KX377336.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1333113331100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133261332699%0.089%HQ234498.1Select seq gb|KX377335.1|Zika virus strain MR-766, complete genome1331713317100%0.089%KX377335.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1331513315100%0.089%KF383115.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1331113311100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1331113311100%0.089%KF268948.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1330813308100%0.089%LC002520.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1330413304100%0.089%KF383119.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1330413304100%0.089%KF268950.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1329913299100%0.089%KU955595.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1329213292100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1329213292100%0.089%KU955594.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1329013290100%0.089%KU955592.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1327713765100%0.089%KX198134.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1327213272100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1325713257100%0.089%KF383116.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1325713257100%0.089%DQ859059.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1325013250100%0.089%AY632535.2Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132321323299%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1319613196100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1316713275100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131651316599%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1299013058100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds129001290097%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108771087797%0.084%KF383120.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds5025502527%0.099%KX212103.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds4991499127%0.099%KU758875.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds4989498927%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds4982498227%0.099%KU758870.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds4980498027%0.099%KU758873.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4980498027%0.099%KU312314.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds4967496727%0.099%KU758872.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds4956495627%0.099%KU758876.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4953495327%0.099%KU312313.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds4928492826%0.099%KU758869.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds4902490226%0.099%KU758868.1
niman Posted June 27, 2016 Author Report Posted June 27, 2016 PRI/PRVABC59/2015 seq map updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeU
Recommended Posts
Please sign in to comment
You will be able to leave a comment after signing in
Sign In Now