niman Posted June 29, 2016 Report Share Posted June 29, 2016 (edited) JCVI has released a full 2016 Zika sequences from mosquitoes in Chiapas, Mexico. Edited June 29, 2016 by niman Link to comment Share on other sites More sharing options...
niman Posted June 29, 2016 Author Report Share Posted June 29, 2016 LOCUS KX446951 10744 bp ss-RNA linear VRL 27-JUN-2016 DEFINITION Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome. ACCESSION KX446951 VERSION KX446951.1 GI:1040790181 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10744) AUTHORS Shabman,R., Puri,V., Dilley,K., Fedorova,N., Shrivastava,S., Amedeo,P., Williams,M., Hu,L. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (27-JUN-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 235.8x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10744 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Aedes.sp/MEX/MEX_I-7/2016" /host="Aedes sp." /db_xref="BEI:NR-50281" /db_xref="taxon:64320" /lab_host="Ceropithicus aethiops kidney epithelial cells Vero E6" /country="Mexico: Chiapas" /collection_date="01-Jan-2016" /note="passage history: V4/V4 (prior to deposit at BEI/BEI); V# = Number of passages in Vero cells" misc_feature 1..10744 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00012.MAIN" gene 91..10362 /gene="GP1" /locus_tag="A2G93_63843gpGP1" CDS 91..10362 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /codon_start=1 /product="polyprotein" /protein_id="ANN83273.1" /db_xref="GI:1040790182" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRAPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT VISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGIMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIL EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWRELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSCISGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 91..402 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 457..735 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="protein pr" mat_peptide 736..960 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 961..2472 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="envelope protein E" mat_peptide 2473..3528 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="nonstructural protein NS1" mat_peptide 3529..4206 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="nonstructural protein NS2A" mat_peptide 4207..4596 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="nonstructural protein NS2B" mat_peptide 4597..6447 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="nonstructural protein NS3" mat_peptide 6448..6828 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="nonstructural protein NS4A" mat_peptide 6829..6897 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="protein 2K" mat_peptide 6898..7650 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="nonstructural protein NS4B" mat_peptide 7651..10359 /gene="GP1" /locus_tag="A2G93_63843gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 aatcagactg cgacagttcg agtttgaagc gaaagctagc aacagtatca acaggtttta 61 ttttggattt ggaaacgaga gtttctggtc atgaaaaacc caaaaaagaa atccggagga 121 ttccggattg tcaatatgct aaaacgcgga gtagcccgtg tgagcccctt tgggggcttg 181 aagaggctgc cagccggact tctgctgggt catgggccca tcaggatggt cttggcgatt 241 ctagcctttt tgagattcac ggcaatcaag ccatcactgg gtctcatcaa tagatggggt 301 tcagtgggga aaaaagaggc tatggaaata ataaagaagt tcaagaaaga tctggctgcc 361 atgctgagaa taatcaatgc taggaaggag aagaagagac gaggcgcaga tactagtgtc 421 ggaattgttg gcctcctgct gaccacagct atggcagcgg aggtcactag acgtgggagt 481 gcatactata tgtacttgga cagaaacgat gctggggagg ccatatcttt tccaaccaca 541 ttggggatga ataagtgtta tatacagatc atggatcttg gacacatgtg tgatgccacc 601 atgagctatg aatgccctat gctggatgag ggggtggaac cagatgacgt cgattgttgg 661 tgcaacacga cgtcaacttg ggttgtgtac ggaacctgcc atcacaaaaa aggtgaagca 721 cggagatcta gaagagctgt gacgctcccc tcccattcca ctaggaagct gcaaacgcgg 781 tcgcaaacct ggttggaatc aagagaatac acaaagcact tgattagagt cgaaaattgg 841 atattcagga accctggctt cgcgttagca gcagctgcca tcgcttggct tttgggaagc 901 tcaacgagcc aaaaagtcat atacttggtt atgatactgc tgattgcccc ggcatacagc 961 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 1021 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 1081 gtcgacatag agctggtcac aacaacagtc agcaacatgg cggaggtaag atcctactgc 1141 tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc 1201 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 1261 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 1321 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 1381 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 1441 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 1501 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 1561 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 1621 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 1681 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 1741 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 1801 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 1861 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 1921 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1981 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 2041 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 2101 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 2161 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 2221 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 2281 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 2341 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 2401 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 2461 gccgtctctg ctgatgtggg gtgctcggtg gacttctcaa agaaggagac gagatgcggt 2521 acaggggtgt tcgtctataa cgacgttgaa gcctggaggg acaggtacaa gtaccatcct 2581 gactcccccc gtagattggc agcagcagtc aagcaagcct gggaagatgg tatctgcggg 2641 atctcctctg tttcaagaat ggaaaacatc atgtggagat cagtagaagg ggagctcaac 2701 gcaatcctgg aagagaatgg agttcaactg acggtcgttg tgggatctgt aaaaaacccc 2761 atgtggagag ctccacagag attgcccgtg cctgtgaacg agctgcccca cggctggaag 2821 gcttggggga aatcgtactt cgtcagagca gcaaagacaa ataacagctt tgtcgtggat 2881 ggtgacacac tgaaggaatg cccactcaaa catagagcat ggaacagctt tcttgtggag 2941 gatcatgggt tcggggtatt ccacactagt gtctggctca aggttagaga agattattca 3001 ttagagtgtg atccagccgt tattggaaca gctgttaagg gaaaggaggc tgtacacagt 3061 gatctaggct actggattga gagtgagaag aatgacacat ggaggctgaa gagggcccat 3121 ctgatcgaga tgaaaacatg tgaatggcca aagtcccaca cattgtggac agatggaata 3181 gaagagagtg atctgatcat acccaagtct ttagctgggc cactcagcca tcacaatacc 3241 agagagggct acaggaccca aatgaaaggg ccatggcaca gtgaagagct tgaaattcgg 3301 tttgaggaat gcccaggcac taaggtccac gtggaggaaa catgtggaac aagaggacca 3361 tctctgagat caaccactgc aagcggaagg gtgatcgagg aatggtgctg cagggagtgc 3421 acaatgcccc cactgtcgtt ccgggctaaa gatggctgtt ggtatggaat ggagataagg 3481 cccaggaaag aaccagaaag caacttagta aggtcaatgg tgactgcagg atcaactgat 3541 cacatggatc acttctccct tggagtgctt gtgattctgc tcatggtgca ggaagggcta 3601 aagaagagaa tgaccacaaa gatcatcata agcacatcaa tggcagtgct ggtagctatg 3661 atcctgggag gattttcaat gagtgacctg gctaagcttg caattttgat gggtgccacc 3721 ttcgcggaaa tgaacactgg aggagatgta gctcatctgg cgctgatagc ggcattcaaa 3781 gtcagaccag cgttgctggt atctttcatc ttcagagcta attggacacc ccgtgaaagc 3841 atgctactgg ccttggcctc gtgtcttttg caaactgtga tctccgcctt ggaaggcgac 3901 ctgatggttc tcatcaatgg ttttgctttg gcctggttgg caatacgagc gatggttgtt 3961 ccacgcactg ataacatcac cttggcaatc ctggctgctc tgacaccact ggcccggggc 4021 acactgcttg tggcgtggag agcaggcctt gctacttgcg gggggtttat gctcctctct 4081 ctgaagggaa aaggcagtgt gaagaagaac ttaccatttg tcatggccct gggactaacc 4141 gctgtgaggc tggtcgaccc catcaacgtg gtgggactgc tgttgctcac aaggagtggg 4201 aagcggagct ggccccctag cgaagtactc acagctgttg gcctgatatg cgcattggct 4261 ggagggttcg ccaaggcaga tatagagatg gctgggccca tggccgcggt cggtctgcta 4321 attgtcagtt acgtggtctc aggaaagagt gtggacatgt acattgaaag agcaggtgac 4381 atcacatggg aaaaagatgc ggaagtcact ggaaacagtc cccggctcga tgtggcgcta 4441 gatgagagtg gtgatttctc cctggtggag gatgacggtc cccccatgag agagatcata 4501 ctcaaggtgg tcctgatgac catctgtggc atgaacccaa tagccatacc ctttgcagct 4561 ggagcgtggt acgtatacgt gaagactggg aaaaggagtg gtgctctatg ggatgtgcct 4621 gctcccaagg aagtaaaaaa gggggagacc acagatggag tgtacagagt aatgactcgt 4681 agactgctag gttcaacaca agttggagtg ggaattatgc aagagggggt ctttcacact 4741 atgtggcacg tcacaaaagg atccgcactg agaagcggtg aagggagact tgatccatac 4801 tggggagatg tcaagcagga tctggtgtca tactgtggtc catggaagct agatgccgcc 4861 tgggacgggc acagcgaggt gcagctcttg gccgtgcccc ccggagagag agcgaggaac 4921 atccagactc tgcccggaat atttaagaca aaggatgggg acattggagc ggttgcgctg 4981 gattacccag caggaacttc aggatctcca atcctagaca agtgtgggag agtgatagga 5041 ctttatggca atggggtcgt gatcaaaaac gggagttatg ttagtgccat cacccaaggg 5101 aggagggagg aagagactcc tgttgagtgc ttcgagcctt cgatgctgaa gaagaagcag 5161 ctaactgtct tagacttaca tcctggagct gggaaaacca ggagagttct tcctgaaata 5221 gtccgtgaag ccataaaaac aagactccgt actgtgatct tagctccaac cagggttgtc 5281 gctgctgaaa tggaggaggc ccttagaggg cttccagtgc gttatatgac aacagcagtc 5341 aatgtcaccc actctggaac agaaatcgtc gacttaatgt gccatgccac cttcacttca 5401 cgtctactac agccaatcag agtccccaac tataatctgt atattatgga tgaggcccac 5461 ttcacagatc cctcaagtat agcagcaagg ggatacattt caacaagggt tgagatgggc 5521 gaggcggctg ccatcttcat gaccgccacg ccaccaggaa cccgtgacgc atttccggac 5581 tccaactcac caattatgga caccgaagtg gaagtcccag agagagcctg gagctcaggc 5641 tttgattggg tgacggatca ttctggaaaa acagtttggt ttgttccaag cgtgaggaac 5701 ggcaatgaga tcgcagcttg tctgacaaag gctggaaaac gggtcataca gctcagcaga 5761 aagacttttg agacagagtt ccagaaaaca aaacatcaag agtgggactt tgtcgtgaca 5821 actgacattt cagagatggg cgccaacttt aaagctgacc gtgtcataga ttccaggaga 5881 tgcctaaagc cggtcatact tgatggcgag agagtcattc tggctggacc catgcctgtc 5941 acacatgcca gcgctgccca gaggaggggg cgcataggca ggaatcccaa caaacctgga 6001 gatgagtatc tgtatggagg tgggtgcgca gagactgacg aagaccatgc acactggctt 6061 gaagcaagaa tgctccttga caatatttac ctccaagatg gcctcatagc ctcgctctat 6121 cgacctgagg ccgacaaagt agcagccatt gagggagagt tcaagcttag gacggagcaa 6181 aggaagacct ttgtggaact catgaaaaga ggagatcttc ctgtttggct ggcctatcag 6241 gttgcatctg ccggaataac ctacacagat agaagatggt gctttgatgg cacgaccaac 6301 aacaccatac tggaagacag tgtgccggca gaggtgtgga ccagacacgg agagaaaaga 6361 gtgctcaaac cgaggtggat ggacgccaga gtttgttcag atcatgcggc cctgaagtca 6421 ttcaaggagt ttgccgctgg gaaaagagga gcggcttttg gagtgatgga agccctggga 6481 acactgccag gacacatgac agagagattc caggaagcca ttgacaacct cgctgtgctc 6541 atgcgggcag agactggaag caggccttac aaagccgcgg cggcccaatt gccggagacc 6601 ctagagacca ttatgctttt ggggttgctg ggaacagtct cgctgggaat ctttttcgtc 6661 ttgatgagga acaagggcat agggaagatg ggctttggaa tggtgaccct tggggccagt 6721 gcatggctca tgtggctctc ggaaattgag ccagccagaa ttgcatgtgt cctcattgtt 6781 gtgttcctat tgctggtggt gctcatacct gagccagaaa agcaaagatc tccccaggac 6841 aaccaaatgg caatcatcat catggtagca gtaggtcttc tgggcttgat taccgccaat 6901 gaactcggat ggttggagag aacaaagagt gacctaagcc atctaatggg aaggagagag 6961 gagggggcaa ccataggatt ctcaatggac attgacctgc ggccagcctc agcttgggcc 7021 atctatgctg ccttgacaac tttcattacc ccagccgtcc aacatgcagt gaccacttca 7081 tacaacaact actccttaat ggcgatggcc acgcaagctg gagtgttgtt tggtatgggc 7141 aaagggatgc cattctacgc atgggacttt ggagtcccgc tgctaatgat aggttgctac 7201 tcacaattaa cacccctgac cctaatagtg gccatcattt tgctcgtggc gcactacatg 7261 tacttgatcc cagggctgca ggcagcagcc gcgcgtgctg cccagaagag aacggcagct 7321 ggcatcatga agaaccctgt tgtggatgga atagtggtga ctgacattga cacaatgaca 7381 attgaccccc aagtggagaa aaagatggga caggtgctac tcatagcagt agccgtctcc 7441 agcgccatac tgtcgcggac cgcctggggg tggggggagg ctggggccct gatcacagcc 7501 gcaacttcca ctttgtggga aggctctccg aacaagtact ggaactcctc tacagccact 7561 tcactgtgta acatttttag gggaagttac ttggctggag cttctctaat ctacacagta 7621 acaagaaacg ctggcttggt caagagacgt gggggtggaa caggagagac cctgggagag 7681 aaatggaagg cccgcttgaa ccagatgtcg gccctggagt tctactccta caaaaagtca 7741 ggcatcaccg aggtgtgcag agaagaggcc cgccgcgccc tcaaggacgg tgtggcaacg 7801 ggaggccatg ctgtgtcccg aggaagtgca aagctgagat ggttggtgga gcggggatac 7861 ctgcagccct atggaaaggt cattgatctt ggatgtggca gagggggctg gagttactac 7921 gccgccacca tccgcaaagt tcaagaagtg aaaggataca caaaaggagg ccctggtcat 7981 gaagaacccg tgttggtgca aagctatggg tggaacatag tccgtcttaa gagtggggtg 8041 gacgtctttc atatggcggc tgagccgtgt gacacgttgc tgtgtgacat aggtgagtca 8101 tcatctagtc ctgaagtgga agaagcacgg acgctcagag tcctctccat ggtgggggat 8161 tggcttgaaa aaagaccagg agccttttgt ataaaagtgt tgtgcccata caccagcact 8221 atgatggaaa ccctggagcg actgcagcgt aggtatgggg gaggactggt cagagtgcca 8281 ctctcccgca actctacaca tgagatgtac tgggtctctg gagcgaaaag caacaccata 8341 aaaagtgtgt ccaccacgag ccagctcctc ttggggcgca tggacgggcc taggaggcca 8401 gtgaaatatg aggaggatgt gaatctcggc tctggcacgc gggctgtggt aagctgcgct 8461 gaggctccca acatgaagat cattggtaac cgcattgaaa ggatccgcag tgagcacgcg 8521 gaaacgtggt tctttgacga gaaccaccca tataggacat gggcttacca tggaagctat 8581 gaggccccca cacaagggtc agcgtcctct ctaataaacg gggttgtcag gctcctgtca 8641 aaaccctggg atgtggtgac tggagtcaca ggaatagcca tgaccgacac cacaccgtat 8701 ggtcagcaaa gagttttcaa ggaaaaagtg gacactaggg tgccagaccc ccaagaaggc 8761 actcgtcagg ttatgagcat ggtctcctcc tggttgtgga gagagctagg caaacacaaa 8821 cggccacgag tctgtaccaa agaagagttc atcaacaagg ttcgtagcaa tgcagcatta 8881 ggggcaatat ttgaagagga aaaagagtgg aagactgcag tggaagctgt gaacgatcca 8941 aggttctggg ctctagtgga caaggaaaga gagcaccacc tgagaggaga gtgccagagt 9001 tgtgtgtaca acatgatggg aaaaagagaa aagaaacaag gggaatttgg aaaggccaag 9061 ggcagccgcg ccatctggta tatgtggcta ggggctagat ttctagagtt cgaagccctt 9121 ggattcttga acgaggatca ctggatgggg agagagaact caggaggtgg tgttgaaggg 9181 ctgggattac aaagactcgg atatgtccta gaagagatga gttgcatatc aggaggaagg 9241 atgtatgcag atgacactgc tggctgggac acccgcatca gcaggtttga tctggagaat 9301 gaagctctaa tcaccaacca aatggagaaa gggcacaggg ccttggcatt ggccataatc 9361 aagtacacat accaaaacaa agtggtaaag gtccttagac cagctgaaaa agggaaaaca 9421 gttatggaca ttatttcgag acaagaccaa agggggagcg gacaagttgt cacttacgct 9481 cttaacacat ttaccaacct agtggtgcaa ctcattcgga atatggaggc tgaggaagtt 9541 ctagagatgc aagacttgtg gctgctgcgg aggtcagaga aagtgaccaa ctggttgcag 9601 agcaacggat gggataggct caaacgaatg gcagtcagtg gagatgattg cgttgtgaag 9661 ccaattgatg ataggtttgc acatgccctc aggttcttga atgatatggg aaaagttagg 9721 aaggacacac aagagtggaa accctcaact ggatgggaca actgggaaga agttccgttt 9781 tgctcccacc acttcaacaa gctccatctc aaggacggga ggtccattgt ggttccctgc 9841 cgccaccaag atgaactgat tggccgggcc cgcgtctctc caggggcggg atggagcatc 9901 cgggagactg cttgcctagc aaaatcatat gcgcaaatgt ggcagctcct ttatttccac 9961 agaagggacc tccgactgat ggccaatgcc atttgttcat ctgtgccagt tgactgggtt 10021 ccaactggga gaactacctg gtcaatccat ggaaagggag aatggatgac cactgaagac 10081 atgcttgtgg tgtggaacag agtgtggatt gaggagaacg accacatgga agacaagacc 10141 ccagttacga aatggacaga cattccctat ttgggaaaaa gggaagactt gtggtgtgga 10201 tctctcatag ggcacagacc gcgcaccacc tgggctgaga acattaaaaa cacagtcaac 10261 atggtgcgca ggatcatagg tgatgaagaa aagtacatgg actacctatc cacccaagtt 10321 cgctacttgg gtgaagaagg gtctacacct ggagtgctgt aagcaccaat cttaatgttg 10381 tcaggcctgc tagtcagcca cagcttgggg aaagctgtgc agcctgtgac ccccccagga 10441 gaagctggga aaccaagcct atagtcaggc cgagaacgcc atggcacgga agaagccatg 10501 ctgcctgtga gcccctcaga ggacactgag tcaaaaaacc ccacgcgctt ggaggcgcag 10561 gatgggaaaa gaaggtggcg accttcccca cccttcaatc tggggcctga actggagatc 10621 agctgtggat ctccagaaga gggactagtg gttagaggag accccccgga aaacgcaaaa 10681 cagcatattg acgctgggaa agaccagaga ctccatgagt ttccaccacg ctggccgcca 10741 ggca Link to comment Share on other sites More sharing options...
niman Posted June 29, 2016 Author Report Share Posted June 29, 2016 Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX446951.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome1852518525100%0.0100%KX446951.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds1851618516100%0.099%KX247632.1Select seq gb|KX446950.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome1847418474100%0.099%KX446950.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome1844418444100%0.099%KX262887.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1842618426100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1842018420100%0.099%KU501216.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1840218402100%0.099%KU870645.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1838118381100%0.099%KU509998.3Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1837518375100%0.099%KJ776791.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome1836618366100%0.099%KX280026.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1836618366100%0.099%KU991811.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1836618366100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1836618366100%0.099%KU365779.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1836618366100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1836318363100%0.099%KX051563.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1836318363100%0.099%KU926309.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1835718357100%0.099%KU729218.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds1835418354100%0.099%KU758877.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1835418354100%0.099%KX197192.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1835418354100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1834818348100%0.099%KU365777.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1834518345100%0.099%KX198135.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1833918339100%0.099%KU940228.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1833918339100%0.099%KU647676.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome1833618336100%0.099%KX247646.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1833618336100%0.099%KX156776.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1833618336100%0.099%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1833618336100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1833618336100%0.099%KU312312.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183321833299%0.099%KU497555.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1833018330100%0.099%KX087101.2Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1833018330100%0.099%KX156774.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1833018330100%0.099%KU729217.2Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1833018330100%0.099%KU527068.1Select seq gb|KX377337.1|Zika virus strain PRVABC-59, complete genome1832718327100%0.099%KX377337.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds1832718327100%0.099%KU820897.3Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1832718327100%0.099%KU937936.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1832718327100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1832718327100%0.099%KX087102.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1832118321100%0.099%KU922960.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1831818318100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1831818318100%0.099%KU922923.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1830918309100%0.099%KU820898.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1830918309100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1830718307100%0.099%KU853012.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1830318303100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1830318303100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1830018300100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1830018300100%0.099%KU761564.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1828518285100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1827618276100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1827618276100%0.099%KU963796.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome1827318273100%0.099%KX253996.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1827318273100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1827318273100%0.099%KU820899.2Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds1826718267100%0.099%KU866423.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182451824599%0.099%KU940224.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1814118141100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1803318033100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1773517735100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177351773599%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176791767998%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1757117571100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1741617416100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164201642099%0.095%HQ234499.1Select seq gb|KX377336.1|Zika virus strain P6-740, complete genome1641916419100%0.095%KX377336.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1328613286100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132811328199%0.089%HQ234498.1Select seq gb|KX377335.1|Zika virus strain MR-766, complete genome1327213272100%0.089%KX377335.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1327013270100%0.089%KF383115.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1326313263100%0.089%LC002520.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1325913259100%0.089%KF383119.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1325413254100%0.089%KU955595.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1325213252100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1325213252100%0.089%KF268948.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1325213252100%0.089%DQ859059.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1324713247100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1324713247100%0.089%KU955594.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1324513245100%0.089%KU955592.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1324513245100%0.089%KF268950.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1323213720100%0.089%KX198134.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1322713227100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1321613216100%0.089%KF383116.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1320513205100%0.089%AY632535.2Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds131961319699%0.088%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1315113151100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1313513242100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131351313599%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1294513013100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128551285597%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108441084497%0.084%KF383120.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds5007500727%0.099%KX212103.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds4996499627%0.099%KU758875.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds4993499327%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds4985498527%0.099%KU758870.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4985498527%0.099%KU312314.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds4983498327%0.099%KU758873.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds4971497127%0.099%KU758872.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds4960496027%0.099%KU758876.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4958495827%0.099%KU312313.1 Link to comment Share on other sites More sharing options...
niman Posted June 29, 2016 Author Report Share Posted June 29, 2016 Seq Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeUÂ Link to comment Share on other sites More sharing options...
niman Posted June 29, 2016 Author Report Share Posted June 29, 2016 LOCUS KX446950 10787 bp ss-RNA linear VRL 27-JUN-2016 DEFINITION Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome. ACCESSION KX446950 VERSION KX446950.1 GI:1040790179 DBLINK BioProject: PRJNA314889 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10787) AUTHORS Shabman,R., Puri,V., Dilley,K., Fedorova,N., Shrivastava,S., Amedeo,P., Williams,M., Hu,L. and Rashid,S. TITLE Direct Submission JOURNAL Submitted (27-JUN-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA COMMENT This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Center for Infectious Diseases (GCID) program. ##Genome-Assembly-Data-START## Current Finishing Status :: Finished Assembly Method :: clc_ref_assemble_long v. 3.22.55705 Genome Coverage :: 233.4x Sequencing Technology :: Illumina ##Genome-Assembly-Data-END## FEATURES Location/Qualifiers source 1..10787 /organism="Zika virus" /mol_type="genomic RNA" /strain="ZIKV/Aedes.sp/MEX/MEX_2-81/2016" /host="Aedes sp." /db_xref="BEI:NR-50280" /db_xref="taxon:64320" /lab_host="Ceropithicus aethiops kidney epithelial cells Vero E6" /country="Mexico: Chiapas" /collection_date="01-Jan-2016" /note="passage history: V4/V3 (prior to deposit at BEI/BEI); V# = number of passages in Vero cells" misc_feature 1..10787 /db_xref="ViPR:ZIKVBE_ZIKVBEI_00011.MAIN" gene 97..10368 /gene="GP1" /locus_tag="A2G93_63842gpGP1" CDS 97..10368 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /codon_start=1 /product="polyprotein" /protein_id="ANN83272.1" /db_xref="GI:1040790180" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPTLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRAPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLKHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMEGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGIMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIL EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPVLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSCISGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 97..408 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="capsid protein C" /note="core protein" mat_peptide 463..741 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="protein pr" mat_peptide 742..966 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="small envelope protein M" /note="membrane glycoprotein M" mat_peptide 967..2478 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="envelope protein E" mat_peptide 2479..3534 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="nonstructural protein NS1" mat_peptide 3535..4212 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="nonstructural protein NS2A" mat_peptide 4213..4602 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="nonstructural protein NS2B" mat_peptide 4603..6453 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="nonstructural protein NS3" mat_peptide 6454..6834 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="nonstructural protein NS4A" mat_peptide 6835..6903 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="protein 2K" mat_peptide 6904..7656 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="nonstructural protein NS4B" mat_peptide 7657..10365 /gene="GP1" /locus_tag="A2G93_63842gpGP1" /product="RNA-dependent RNA polymerase NS5" /note="nonstructural protein 5" ORIGIN 1 tgtgtgaatc agactgcgac agttcgagtt tgaagcgaaa gctagcaaca gtatcaacag 61 gttttatttt ggatttggaa acgagagttt ctggtcatga aaaacccaaa aaagaaatcc 121 ggaggattcc ggattgtcaa tatgctaaaa cgcggagtag cccgtgtgag cccctttggg 181 ggcttgaaga ggctgccagc cggacttctg ctgggtcatg ggcccatcag gatggtcttg 241 gcgattctag cctttttgag attcacggca atcaagccat cactgggtct catcaataga 301 tggggttcag tggggaaaaa agaggctatg gaaataataa agaagttcaa gaaagatctg 361 gctgccatgc tgagaataat caatgctagg aaggagaaga agagacgagg cgcagatact 421 agtgtcggaa ttgttggcct cctgctgacc acagctatgg cagcggaggt cactagacgt 481 gggagtgcat actatatgta cttggacaga aacgatgctg gggaggccat atcttttcca 541 accacattgg ggatgaataa gtgttatata cagatcatgg atcttggaca catgtgtgat 601 gccaccatga gctatgaatg ccctacgctg gatgaggggg tggaaccaga tgacgtcgat 661 tgttggtgca acacgacgtc aacttgggtt gtgtacggaa cctgccatca caaaaaaggt 721 gaagcacgga gatctagaag agctgtgacg ctcccctccc attccactag gaagctgcaa 781 acgcggtcgc aaacctggtt ggaatcaaga gaatacacaa agcacttgat tagagtcgaa 841 aattggatat tcaggaaccc tggcttcgcg ttagcagcag ctgccatcgc ttggcttttg 901 ggaagctcaa cgagccaaaa agtcatatac ttggtcatga tactgctgat tgccccagca 961 tacagcatca ggtgcatagg agtcagcaat agggactttg tggaaggtat gtcaggtggg 1021 acttgggttg atgttgtctt ggaacatgga ggttgtgtca ccgtaatggc acaggacaaa 1081 ccgactgtcg acatagagct ggtcacaaca acagtcagca acatggcgga ggtaagatcc 1141 tactgctatg aggcatcaat atcagacatg gcttcggaca gccgctgccc aacacaaggt 1201 gaagcctacc ttgacaagca atcagacact caatatgtct gcaaaagaac gttagtggac 1261 agaggctggg gaaatggatg tggacttttt ggcaaaggga gcctggtgac atgcgctaag 1321 tttgcatgct ccaagaaaat gaccgggaag agcatccagc cagagaatct ggagtaccgg 1381 ataatgctgt cagttcatgg ctcccagcac agtgggatga tcgttaatga cacaggacat 1441 gaaactgatg agaatagagc gaaggttgag ataacgccca attcaccaag agccgaagcc 1501 accctggggg gttttggaag cctaggactt gattgtgaac cgaggacagg ccttgacttt 1561 tcagatttgt attacttgac tatgaataac aagcactggt tggttcacaa ggagtggttc 1621 cacgacattc cattaccttg gcacgctggg gcagacaccg gaactccaca ctggaacaac 1681 aaagaagcac tggtagagtt caaggacgca catgccaaaa ggcaaactgt cgtggttcta 1741 gggagtcaag aaggagcagt tcacacggcc cttgctggag ctctggaggc tgagatggat 1801 ggtgcaaagg gaaggctgtc ctctggccac ttgaaatgtc gcctgaaaat ggataaactt 1861 agattgaagg gcgtgtcata ctccttgtgt accgcagcgt tcacattcac caagatcccg 1921 gctgaaacac tgcacgggac agtcacagtg gaggtacagt acgcagggac agatggacct 1981 tgcaaggttc cagctcagat ggcggtggac atgcaaactc tgaccccagt tgggaggttg 2041 ataaccgcta accccgtaat cactgaaagc actgagaact ctaagatgat gctggaactt 2101 gatccaccat ttggggactc ttacattgtc ataggagtcg gggagaagaa gatcacccac 2161 cactggcaca ggagtggcag taccattgga aaagcatttg aagccactgt gagaggtgcc 2221 aagagaatgg cagtcttggg agacacagcc tgggactttg gatcagttgg aggcgctctc 2281 aactcattgg gcaagggcat ccatcaaatt tttggagcag ctttcaaatc attgtttgga 2341 ggaatgtcct ggttctcaca aattctcatt ggaacgttgc tgatgtggtt gggtctgaac 2401 acaaagaatg gatctatttc ccttatgtgc ttggccttag ggggagtgtt gatcttctta 2461 tccacagccg tctctgctga tgtggggtgc tcggtggact tctcaaagaa ggagacgaga 2521 tgcggtacag gggtgttcgt ctataacgac gttgaagcct ggagggacag gtacaagtac 2581 catcctgact ccccccgtag attggcagca gcagtcaagc aagcctggga agatggtatc 2641 tgcgggatct cctctgtttc aagaatggaa aacatcatgt ggagatcagt agaaggggag 2701 ctcaacgcaa tcctggaaga gaatggagtt caactgacgg tcgttgtggg atctgtaaaa 2761 aaccccatgt ggagagctcc acagagattg cccgtgcctg tgaacgagct gccccacggc 2821 tggaaggctt gggggaaatc gtacttcgtc agagcagcaa agacaaataa cagctttgtc 2881 gtggatggtg acacactgaa ggaatgccca ctcaaacata gagcatggaa cagctttctt 2941 gtggaggatc atgggttcgg ggtattccac actagtgtct ggctcaaggt tagagaagat 3001 tattcattag agtgtgatcc agccgttatt ggaacagctg ttaagggaaa ggaggctgta 3061 cacagtgatc taggctactg gattgagagt gagaagaatg acacatggag gctgaagagg 3121 gcccatctga tcgagatgaa aacatgtgaa tggccaaagt cccacacatt gtggacagat 3181 ggaatagaag agagtgatct gatcataccc aagtctttag ctgggccact cagccatcac 3241 aataccagag agggctacag gacccaaatg gaagggccat ggcacagtga agagcttgaa 3301 attcggtttg aggaatgccc aggcactaag gtccacgtgg aggaaacatg tggaacaaga 3361 ggaccatctc tgagatcaac cactgcaagc ggaagggtga tcgaggaatg gtgctgcagg 3421 gagtgcacaa tgcccccact gtcgttccgg gctaaagatg gctgttggta tggaatggag 3481 ataaggccca ggaaagaacc agaaagcaac ttagtaaggt caatggtgac tgcaggatca 3541 actgatcaca tggatcactt ctcccttgga gtgcttgtga ttctgctcat ggtgcaggaa 3601 gggctaaaga agagaatgac cacaaagatc atcataagca catcaatggc agtgctggta 3661 gctatgatcc tgggaggatt ttcaatgagt gacctggcta agcttgcaat tttgatgggt 3721 gccaccttcg cggaaatgaa cactggagga gatgtagctc atctggcgct gatagcggca 3781 ttcaaagtca gaccagcgtt gctggtatct ttcatcttca gagctaattg gacaccccgt 3841 gaaagcatgc tactggcctt ggcctcgtgt cttttgcaaa ctgcgatctc cgccttggaa 3901 ggcgacctga tggttctcat caatggtttt gctttggcct ggttggcaat acgagcgatg 3961 gttgttccac gcactgataa catcaccttg gcaatcctgg ctgctctgac accactggcc 4021 cggggcacac tgcttgtggc gtggagagca ggccttgcta cttgcggggg gtttatgctc 4081 ctctctctga agggaaaagg cagtgtgaag aagaacttac catttgtcat ggccctggga 4141 ctaaccgctg tgaggctggt cgaccccatc aacgtggtgg gactgctgtt gctcacaagg 4201 agtgggaagc ggagctggcc ccctagcgaa gtactcacag ctgttggcct gatatgcgca 4261 ttggctggag ggttcgccaa ggcagatata gagatggctg ggcccatggc cgcggtcggt 4321 ctgctaattg tcagttacgt ggtctcagga aagagtgtgg acatgtacat tgaaagagca 4381 ggtgacatca catgggaaaa agatgcggaa gtcactggaa acagtccccg gctcgatgtg 4441 gcgctagatg agagtggtga tttctccctg gtggaggatg acggtccccc catgagagag 4501 atcatactca aggtggtcct gatgaccatc tgtggcatga acccaatagc catacccttt 4561 gcagctggag cgtggtacgt atacgtgaag actgggaaaa ggagtggtgc tctatgggat 4621 gtgcctgctc ccaaggaagt aaaaaagggg gagaccacag atggagtgta cagagtaatg 4681 actcgtagac tgctaggttc aacacaagtt ggagtgggaa ttatgcaaga gggggtcttt 4741 cacactatgt ggcacgtcac aaaaggatcc gcactgagaa gcggtgaagg gagacttgat 4801 ccatactggg gagatgtcaa gcaggatctg gtgtcatact gtggtccatg gaagctagat 4861 gccgcctggg acgggcacag cgaggtgcag ctcttggccg tgccccccgg agagagagcg 4921 aggaacatcc agactctgcc cggaatattt aagacaaagg atggggacat tggagcggtt 4981 gcgctggatt acccagcagg aacttcagga tctccaatcc tagacaagtg tgggagagtg 5041 ataggacttt atggcaatgg ggtcgtgatc aaaaacggga gttatgttag tgccatcacc 5101 caagggagga gggaggaaga gactcctgtt gagtgcttcg agccttcgat gctgaagaag 5161 aagcagctaa ctgtcttaga cttacatcct ggagctggga aaaccaggag agttcttcct 5221 gaaatagtcc gtgaagccat aaaaacaaga ctccgtactg tgatcttagc tccaaccagg 5281 gttgtcgctg ctgaaatgga ggaggccctt agagggcttc cagtgcgtta tatgacaaca 5341 gcagtcaatg tcacccactc tggaacagaa atcgtcgact taatgtgcca tgccaccttc 5401 acttcacgtc tactacagcc aatcagagtc cccaactata atctgtatat tatggatgag 5461 gcccacttca cagatccctc aagtatagca gcaagaggat acatttcaac aagggttgag 5521 atgggcgagg cggctgccat cttcatgacc gccacgccac caggaacccg tgacgcattt 5581 ccggactcca actcaccaat tatggacacc gaagtggaag tcccagagag agcctggagc 5641 tcaggctttg attgggtgac ggatcattct ggaaaaacag tttggtttgt tccaagcgtg 5701 aggaacggca atgagatcgc agcttgtctg acaaaggctg gaaaacgggt catacagctc 5761 agcagaaaga cttttgagac agagttccag aaaacaaaac atcaagagtg ggactttgtc 5821 gtgacaactg acatttcaga gatgggcgcc aactttaaag ctgaccgtgt catagattcc 5881 aggagatgcc taaagccggt catacttgat ggcgagagag tcattctggc tggacccatg 5941 cctgtcacac atgccagcgc tgcccagagg agggggcgca taggcaggaa tcccaacaaa 6001 cctggagatg agtatctgta tggaggtggg tgcgcagaga ctgacgaaga ccatgcacac 6061 tggcttgaag caagaatgct ccttgacaat atttacctcc aagatggcct catagcctcg 6121 ctctatcgac ctgaggccga caaagtagca gccattgagg gagagttcaa gcttaggacg 6181 gagcaaagga agacctttgt ggaactcatg aaaagaggag atcttcctgt ttggctggcc 6241 tatcaggttg catctgccgg aataacctac acagatagaa gatggtgctt tgatggcacg 6301 accaacaaca ccatactgga agacagtgtg ccggcagagg tgtggaccag acacggagag 6361 aaaagagtgc tcaaaccgag gtggatggac gccagagttt gttcagatca tgcggccctg 6421 aagtcattca aggagtttgc cgctgggaaa agaggagcgg cttttggagt gatggaagcc 6481 ctgggaacac tgccaggaca catgacagag agattccagg aagccattga caacctcgct 6541 gtgctcatgc gggcagagac tggaagcagg ccttacaaag ccgcggcggc ccaattgccg 6601 gagaccctag agaccattat gcttttgggg ttgctgggaa cagtctcgct gggaatcttt 6661 ttcgtcttga tgaggaacaa gggcataggg aagatgggct ttggaatggt gacccttggg 6721 gccagtgcat ggctcatgtg gctctcggaa attgagccag ccagaattgc atgtgtcctc 6781 attgttgtgt tcctattgct ggtggtgctc atacctgagc cagaaaagca aagatctccc 6841 caggacaacc aaatggcaat catcatcatg gtagcagtag gtcttctggg cttgattacc 6901 gccaatgaac tcggatggtt ggagagaaca aagagtgacc taagccatct aatgggaagg 6961 agagaggagg gggcaaccat aggattctca atggacattg acctgcggcc agcctcagct 7021 tgggccatct atgctgcctt gacaactttc attaccccag ccgtccaaca tgcagtgacc 7081 acttcataca acaactactc cttaatggcg atggccacgc aagctggagt gttgtttggt 7141 atgggcaaag ggatgccatt ctacgcatgg gactttggag tcccgctgct aatgataggt 7201 tgctactcac agttaacacc cctgacccta atagtggcca tcattttgct cgtggcgcac 7261 tacatgtact tgatcccagg gctgcaggca gcagccgcgc gtgctgccca gaagagaacg 7321 gcagctggca tcatgaagaa ccctgttgtg gatggaatag tggtgactga cattgacaca 7381 atgacaattg acccccaagt ggagaaaaag atgggacagg tgctactcat agcagtagcc 7441 gtctccagcg ccatactgtc gcggaccgcc tgggggtggg gggaggctgg ggccctgatc 7501 acagccgcaa cttccacttt gtgggaaggc tctccgaaca agtactggaa ctcctctaca 7561 gccacttcac tgtgtaacat ttttagggga agttacttgg ctggagcttc tctaatctac 7621 acagtaacaa gaaacgctgg cttggtcaag agacgcgggg gtggaacagg agagaccctg 7681 ggagagaaat ggaaggcccg cttgaaccag atgtcggccc tggagttcta ctcctacaaa 7741 aagtcaggca tcaccgaggt gtgcagagaa gaggcccgcc gcgccctcaa ggacggtgtg 7801 gcaacgggag gccatgctgt gtcccgagga agtgcaaagc tgagatggtt ggtggagcgg 7861 ggatacctgc agccctatgg aaaggtcatt gatcttggat gtggcagagg gggctggagt 7921 tactacgccg ccaccatccg caaagttcaa gaagtgaaag gatacacaaa aggaggccct 7981 ggtcatgaag aacccgtgtt ggtgcaaagc tatgggtgga acatagtccg tcttaagagt 8041 ggggtggacg tctttcatat ggcggctgag ccgtgtgaca cgttgctgtg tgacataggt 8101 gagtcatcat ctagtcctga agtggaagaa gcacggacgc tcagagtcct ctccatggtg 8161 ggggattggc ttgaaaaaag accaggagcc ttttgtataa aagtgttgtg cccatacacc 8221 agcactatga tggaaaccct ggagcgactg cagcgtaggt atgggggagg actggtcaga 8281 gtgccactct cccgcaactc tacacatgag atgtactggg tctctggagc gaaaagcaac 8341 accataaaaa gtgtgtccac cacgagccag ctcctcttgg ggcgcatgga cgggcctagg 8401 aggccagtga aatatgagga ggatgtgaat ctcggctctg gcacgcgggc tgtggtaagc 8461 tgcgctgagg ctcccaacat gaagatcatt ggtaaccgca ttgaaaggat ccgcagtgag 8521 cacgcggaaa cgtggttctt tgacgagaac cacccatata ggacatgggc ttaccatgga 8581 agctatgagg cccccacaca agggtcagcg tcctctctaa taaacggggt tgtcaggctc 8641 ctgtcaaaac cctgggatgt ggtgactgga gtcacaggaa tagccatgac cgacaccaca 8701 ccgtatggtc agcaaagagt tttcaaggaa aaagtggaca ctagggtgcc agacccccaa 8761 gaaggcactc gtcaggttat gagcatggtc tcttcctggt tgtggaaaga gctaggcaaa 8821 cacaaacggc cacgagtctg taccaaagaa gagttcatca acaaggttcg tagcaatgca 8881 gcattagggg caatatttga agaggaaaaa gagtggaaga ctgcagtgga agctgtgaac 8941 gatccaaggt tctgggctct agtggacaag gaaagagagc accacctgag aggagagtgc 9001 cagagttgtg tgtacaacat gatgggaaaa agagaaaaga aacaagggga atttggaaag 9061 gccaagggca gccgcgccat ctggtatatg tggctagggg ctagatttct agagttcgaa 9121 gcccttggat tcttgaacga ggatcactgg atggggagag agaactcagg aggtggtgtt 9181 gaagggctgg gattacaaag actcggatat gtcctagaag agatgagttg catatcagga 9241 ggaaggatgt atgcagatga cactgctggc tgggacaccc gcatcagcag gtttgatctg 9301 gagaatgaag ctctaatcac caaccaaatg gagaaagggc acagggcctt ggcattggcc 9361 ataatcaagt acacatacca aaacaaagtg gtaaaggtcc ttagaccagc tgaaaaaggg 9421 aaaacagtta tggacattat ttcgagacaa gaccaaaggg ggagcggaca agttgtcact 9481 tacgctctta acacatttac caacctagtg gtgcaactca ttcggaatat ggaggctgag 9541 gaagttctag agatgcaaga cttgtggctg ctgcggaggt cagagaaagt gaccaactgg 9601 ttgcagagca acggatggga taggctcaaa cgaatggcag tcagtggaga tgattgcgtt 9661 gtgaagccaa ttgatgatag gtttgcacat gccctcaggt tcttgaatga tatgggaaaa 9721 gttaggaagg acacacaaga gtggaaaccc tcaactggat gggacaactg ggaagaagtt 9781 ccgttttgct cccaccactt caacaagctc catctcaagg acgggaggtc cattgtggtt 9841 ccctgccgcc accaagatga actgattggc cgggcccgcg tctctccagg ggcgggatgg 9901 agcatccggg agactgcttg cctagcaaaa tcatatgcgc aaatgtggca gctcctttat 9961 ttccacagaa gggacctccg actgatggcc aatgccattt gttcatctgt gccagttgac 10021 tgggttccaa ctgggagaac tacctggtca atccatggaa agggagaatg gatgaccact 10081 gaagacatgc ttgtggtgtg gaacagagtg tggattgagg agaacgacca catggaagac 10141 aagaccccag ttacgaaatg gacagacatt ccctatttgg gaaaaaggga agacttgtgg 10201 tgtggatctc tcatagggca cagaccgcgc accacctggg ctgagaacat taaaaacaca 10261 gtcaacatgg tgcgcaggat cataggtgat gaagaaaagt acatggacta cctatccacc 10321 caagttcgct acttgggtga agaagggtct acacctggag tgctgtaagc accaatctta 10381 atgttgtcag gcctgctagt cagccacagc ttggggaaag ctgtgcagcc tgtgaccccc 10441 ccaggagaag ctgggaaacc aagcctatag tcaggccgag aacgccatgg cacggaagaa 10501 gccatgctgc ctgtgagccc ctcagaggac actgagtcaa aaaaccccac gcgcttggag 10561 gcgcaggatg ggaaaagaag gtggcgacct tccccaccct tcaatctggg gcctgaactg 10621 gagatcagct gtggatctcc agaagaggga ctagtggtta gaggagaccc cccggaaaac 10681 gcaaaacagc atattgacgc tgggaaagac cagagactcc atgagtttcc accacgctgg 10741 ccgccaggca cagatcgccg aatagcggcg gccggtgtgg ggaaatc Link to comment Share on other sites More sharing options...
niman Posted June 29, 2016 Author Report Share Posted June 29, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX446950.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome1852518525100%0.0100%KX446950.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds1848418484100%0.099%KX247632.1Select seq gb|KX446951.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome1847418474100%0.099%KX446951.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome1843818438100%0.099%KX262887.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1842018420100%0.099%KU501217.1Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1841718417100%0.099%KU501216.1Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1839918399100%0.099%KU870645.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1837518375100%0.099%KU509998.3Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1837218372100%0.099%KU991811.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1837218372100%0.099%KJ776791.1Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome1836318363100%0.099%KX280026.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1836318363100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1836318363100%0.099%KU365779.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1836318363100%0.099%KU321639.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1835718357100%0.099%KX051563.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1835718357100%0.099%KU926309.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1835418354100%0.099%KU729218.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds1834818348100%0.099%KU758877.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1834818348100%0.099%KX197192.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1834818348100%0.099%KU365780.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1834518345100%0.099%KU365777.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1833918339100%0.099%KX198135.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1833618336100%0.099%KU940228.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1833618336100%0.099%KU647676.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome1833018330100%0.099%KX247646.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1833018330100%0.099%KX156776.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1833018330100%0.099%KU501215.1Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1833018330100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1833018330100%0.099%KU312312.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1832718327100%0.099%KX087101.2Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1832718327100%0.099%KX156774.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1832718327100%0.099%KU729217.2Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183271832799%0.099%KU497555.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1832718327100%0.099%KU527068.1Select seq gb|KX377337.1|Zika virus strain PRVABC-59, complete genome1832118321100%0.099%KX377337.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds1832118321100%0.099%KU820897.3Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1832118321100%0.099%KU937936.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1832118321100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1832118321100%0.099%KX087102.1Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1831818318100%0.099%KU922960.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1831218312100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1831218312100%0.099%KU922923.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1830318303100%0.099%KU820898.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1830318303100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1830318303100%0.099%KU853012.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1830018300100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1830018300100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1829418294100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1829418294100%0.099%KU761564.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1828218282100%0.099%KX117076.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1827318273100%0.099%KX185891.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1827318273100%0.099%KU963796.1Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome1826718267100%0.099%KX253996.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1826718267100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1826718267100%0.099%KU820899.2Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds1826418264100%0.099%KU866423.2Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome182401824099%0.099%KU940224.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1813718137100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1802918029100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1773217732100%0.098%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds177301773099%0.098%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds176761767698%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1756717567100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1741117411100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164111641199%0.095%HQ234499.1Select seq gb|KX377336.1|Zika virus strain P6-740, complete genome1640616406100%0.095%KX377336.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1328113281100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds132751327599%0.089%HQ234498.1Select seq gb|KX377335.1|Zika virus strain MR-766, complete genome1326813268100%0.089%KX377335.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1326113261100%0.089%KF383115.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1325913259100%0.089%LC002520.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1325413254100%0.089%KF383119.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1324813248100%0.089%KF268949.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1324813248100%0.089%DQ859059.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1324513245100%0.089%KU955595.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1324313243100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1324313243100%0.089%KU955594.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1323913239100%0.089%KF268948.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1323613236100%0.089%KU955592.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1323213232100%0.089%KF268950.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1322313706100%0.089%KX198134.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1321813218100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1320313203100%0.089%KF383116.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1320013200100%0.089%AY632535.2Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds131871318799%0.088%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1315113151100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1312613233100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131261312699%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1294013008100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128521285297%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108411084197%0.084%KF383120.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds5003500327%0.099%KX212103.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds4987498727%0.099%KU758875.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds4983498327%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds4976497627%0.099%KU758870.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4976497627%0.099%KU312314.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds4974497427%0.099%KU758873.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds4962496227%0.099%KU758872.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds4951495127%0.099%KU758876.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4949494927%0.099%KU312313.1 Link to comment Share on other sites More sharing options...
niman Posted June 29, 2016 Author Report Share Posted June 29, 2016 Sequence Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeUÂ Link to comment Share on other sites More sharing options...
niman Posted June 30, 2016 Author Report Share Posted June 30, 2016  1.Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome10,787 bp linear RNAAccession: KX446950.1 GI: 1040790179GenBankFASTAGraphicsSelect item 10407901812.Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome10,744 bp linear RNAAccession: KX446951.1 GI: 1040790181GenBankFASTAGraphics Link to comment Share on other sites More sharing options...
niman Posted July 23, 2016 Author Report Share Posted July 23, 2016 Outbreak of Zika virus infection, Chiapas State, Mexico, 2015, and first confirmed transmission by Aedes aegypti mosquitoes in the AmericasMathilde Guerbois1,*, Ildefonso Fernandez-Salas2,*, Sasha R. Azar1,Rogelio Danis-Lozano2, Celia M. Alpuche-Aranda3, Grace Leal1, Iliana R. Garcia-Malo2,Esteban E. Diaz-Gonzalez4,5, Mauricio Casas-Martinez2, Shannan L. Rossi1,Samanta L. Del RÃo-Galván5, Rosa M. Sanchez-Casas4,6, Christopher M. Roundy1,Thomas G. Wood7, Steven G. Widen7, Nikos Vasilakis1 and Scott C. Weaver1,#+Author Affiliations1Institute for Human Infections and Immunity and Departments of Microbiology & Immunology and Pathology, University of Texas Medical Branch, Galveston, Texas2Instituto Nacional de Salud Pública, Centro Regional de Salud Pública, Tapachula, Chiapas, México3Instituto Nacional de Salud Pública, Centro de Investigación sobre Enfermedades Infecciosas, Cuernavaca, Morelos, México4Universidad Autónoma de Nuevo León, Centro de Investigación y Desarrollo en Ciencias de la Salud, Monterrey, Nuevo León5Universidad Autónoma de Nuevo León, Facultad de Ciencias Biológicas, San Nicolás de los Garza, Nuevo León6Universidad Autónoma de Nuevo León, Facultad de Medicina Veterinaria y Zootecnia, Escobedo, Nuevo León7Department of Biochemistry and Molecular Biology, University of Texas Medical, Branch, Galveston, Texas↵#Corresponding author: Dr. Scott Weaver, Dept. of Microbiology and Immunology, University of Texas Medical Branch, 301 University Blvd., Galveston, TX 77555-0610 ([email protected]).↵* These authors contributed equallyAbstractBackground. After decades of obscurity, Zika virus (ZIKV) has spread through the Americas since 2015 accompanied by congenital microcephaly and Guillain Barré syndrome. Although these epidemics presumably involve transmission by Aedes aegypti, no direct evidence of vector involvement has been reported, prompting speculation that other mosquitoes such as Culex quinquefasciatus could be involved.Methods. We detected an outbreak of ZIKV infection in southern Mexico in late 2015. Sera from suspected ZIKV-infected patients were analyzed for viral RNA and antibodies. Mosquitoes were collected in and around patient homes and tested for ZIKV.Results. Of 119 suspected ZIKV-infected patients, 25 (21%) were confirmed by RT-PCR of serum collected 1-8 days after the onset of signs and symptoms including rash, arthralgia, headache, pruritus, myalgia, and fever. Of 796 mosquitoes collected, A. aegypti yielded ZIKV detection by RT-PCR in 15 of 55 pools (27.3%). No ZIKV was detected in C. quinquefasciatus. ZIKV sequences derived from sera and mosquitoes showed a monophyletic relationship suggestive of a point source introduction from Guatemala.Conclusions. These results demonstrate the continued, rapid northward progression of ZIKV into North America with typically mild disease manifestations, and implicate A. aegypti for the first time as a principal vector in North America.http://jid.oxfordjournals.org/content/early/2016/07/18/infdis.jiw302.full.pdf+html?sid=20edfafe-b0cc-4352-b63e-55692d73138f Link to comment Share on other sites More sharing options...
niman Posted July 23, 2016 Author Report Share Posted July 23, 2016 UTMB researchers find first direct evidence that A. aegypti mosquito transmits Zika virusBy admin -July 21, 2016130 0Share on Facebook Tweet on Twitter  GALVESTON, Texas – In collaboration with colleagues from Mexico, University of Texas Medical Branch at Galveston researchers were the first to directly connect the Aedes aegypti mosquito with Zika transmission in the Americas, during an outbreak in southern Mexico. The findings are available in the Journal of Infectious Diseases.The findings will help scientists to better target efforts for controlling the population of mosquitoes carrying the Zika virus.In early 2015 the first Zika infections were described in Brazil, harbingers of an explosive hemispheric epidemic. As of July 2016, local Zika infections have been reported in 39 countries and territories in the Americas, with the epidemic spreading throughout most of northern South America and nearly all of Central America and the Caribbean. Many countries in North America and Europe have also reported hundreds of imported cases."Because several experimental studies have suggested that A. aegypti is not highly susceptible to Zika virus infection and there has been a lack of direct evidence of A. aegypti infection during outbreaks, some scientists have speculated that other common tropical urban mosquitoes such as Culex quinquefasciatus could be involved," said UTMB professor Scott Weaver, senior author of this paper. "We sought to more directly investigate which mosquito is responsible for spreading Zika virus so that we can selectively tailor our mosquito control efforts to a specific mosquito species' habits."The signs and symptoms of Zika infection are similar to the mosquito-borne diseases chikungunya and dengue. However, near the beginning of the outbreak in November of 2015 physicians in communities on the Mexico-Guatemala border reported to the Centro Regional de Investigacion Salud Publica an increase in the number of patents showing signs and symptoms thought to be different from those of chikungunya or dengue.To investigate this outbreak further, during November and December last year, researchers from the Mexican National Institute of Public Health completed a house-to-house survey to identify patients who met the World Health Organization case definition of Zika virus infection in several locations in the state of Chiapas.The researchers collected 119 blood samples with permission from people suspected of Zika virus infection. Zika virus was confirmed in 21 percent of the blood samples using a PCR-based test. No pregnant females were studied.The researchers also gathered adult mosquitoes in and around 69 homes of suspected Zika patients using backpack aspirators, and identified Zika virus in several samples of A. aegypti but not in other mosquito species."Our study indicates that A. aegypti was the principal carrier of Zika virus in the Tapachula area of Chiapas State, based on the detection of virus in several mosquito pools and the prior demonstrated transmission competence of this species of mosquito," said Weaver. "It's important to note that Zika was not found in C. quinquefasciatus, another common urban tropical mosquito discussed as a potential Zika vector."###Other authors of this paper include UTMB's Mathilde Guerbois, Sasha Azar, Grace Leal, Shannan Rossi, Christopher Roundy, Thomas Wood, Steven Widenn and Nikos Vasilakis; Ildefonso Fernandez-Salas, Rogelio Danis-Lozano, Iliana Garcia-Malo and Mauricio Casas-Martinez from Instituto Nacional de Salud Pública, Centro Regional de Salud Pública, Tapachula, Chiapas, México; Celia Alpuche-Aranda from the Instituto Nacional de Salud Pública, Centro de Investigación sobre Enfermedades Infecciosas, Cuernavaca, Morelos, México; Esteban Diaz-Gonzalez from the Universidad Autónoma de Nuevo León, Centro de Investigación y Desarrollo en Ciencias de la Salud, Monterrey, Nuevo León; Samanta Del RÃo-Galván from the Universidad Autónoma de Nuevo León, Facultad de Ciencias Biológicas, San Nicolás de los Garza, Nuevo León and Rosa Sanchez-Casas from the Universidad Autónoma de Nuevo León, Facultad de Medicina Veterinaria y Zootecnia, Escobedo, Nuevo León.This research was supported by the National Institutes of Health.Media ContactDonna Ramirez[email protected]409-772-8791@utmb_newshttp://www.utmb.eduhttp://scienmag.com/utmb-researchers-find-first-direct-evidence-that-a-aegypti-mosquito-transmits-zika-virus/ Link to comment Share on other sites More sharing options...
niman Posted July 25, 2016 Author Report Share Posted July 25, 2016 Direct Evidence Identifies Aedes Aegypti Mosquito Transmits ZikaHealth | Press Trust of India | Updated: July 25, 2016 14:00 IST EMAILPRINTCOMMENTS The symptoms of Zika infection are similar to the mosquito-borne diseases. (Representational)Scientists have for the first time directly connected the Aedes aegypti mosquito with transmission of the Zika virus in the Americas.The findings may help researchers to better target efforts for controlling the population of mosquitoes carrying the Zika virus, which has been linked to serious birth defects.Last year, the first Zika infections were described in Brazil, harbingers of an explosive hemispheric epidemic.  As of this month, local Zika infections have been reported in 39 countries and territories in the Americas, with the epidemic spreading throughout most of northern South America and nearly all of Central America and the Caribbean.Many countries in North America and Europe have also reported hundreds of imported cases."Because several experimental studies have suggested that A aegypti is not highly susceptible to Zika virus infection and there has been a lack of direct evidence of A aegypti infection during outbreaks, some scientists have speculated that other common tropical urban mosquitoes such as Culex quinquefasciatus could be involved," said Scott Weaver, professor at the University of Texas Medical Branch at Galveston (UTMB)."We sought to more directly investigate which mosquito is responsible for spreading Zika virus so that we can selectively tailor our mosquito control efforts to a specific mosquito species' habits," said Weaver.The signs and symptoms of Zika infection are similar to the mosquito-borne diseases chikungunya and dengue.However, near the beginning of the outbreak last year physicians in communities on the Mexico-Guatemala border reported an increase in the number of patents showing signs and symptoms thought to be different from those of chikungunya or dengue.To study this outbreak further, researchers from the Mexican National Institute of Public Health conducted a house-to-house survey to identify patients who met the World Health Organisation (WHO) case definition of Zika virus infection in several locations in the state of Chiapas.The researchers collected 119 blood samples from people suspected of Zika virus infection. Zika virus was confirmed in 21 per cent of the blood samples using a PCR-based test.No pregnant females were studied.They also gathered adult mosquitoes in and around 69 homes of suspected Zika patients using backpack aspirators, and identified Zika virus in several samples of A aegypti but not in other mosquito species."Our study indicates that A aegypti was the principal carrier of Zika virus in the Tapachula area of Chiapas State, based on the detection of virus in several mosquito pools and the prior demonstrated transmission competence of this species of mosquito," said Weaver."It's important to note that Zika was not found in C quinquefasciatus, another common urban tropical mosquito discussed as a potential Zika vector," he said.The findings were published in the Journal of Infectious Diseases.(This story has not been edited by NDTV staff and is auto-generated from a syndicated feed.)http://www.ndtv.com/health/direct-evidence-identifies-aedes-aegypti-mosquito-transmits-zika-1435811 Link to comment Share on other sites More sharing options...
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