niman Posted October 9, 2015 Report Share Posted October 9, 2015 Seoul National University College of Medicine has released 13 partial (615 BP) S gene sequences from June collections from South Korea MERS cases which match the index case. Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717696 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/016_05_2015 spike protein (S) gene, partial cds. ACCESSION KT717696 VERSION KT717696.1 GI:930625819 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/016_05_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="11-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00414.1" /db_xref="GI:930625820" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717697 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/023_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717697 VERSION KT717697.1 GI:930625821 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/023_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="11-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00415.1" /db_xref="GI:930625822" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717698 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/024_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717698 VERSION KT717698.1 GI:930625823 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/024_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="08-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00416.1" /db_xref="GI:930625824" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717699 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/030_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717699 VERSION KT717699.1 GI:930625825 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/030_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="08-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00417.1" /db_xref="GI:930625826" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717700 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/031_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717700 VERSION KT717700.1 GI:930625827 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/031_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="08-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00418.1" /db_xref="GI:930625828" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717701 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/038_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717701 VERSION KT717701.1 GI:930625829 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/038_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="10-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00419.1" /db_xref="GI:930625830" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717702 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/054_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717702 VERSION KT717702.1 GI:930625831 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/054_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="09-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00420.1" /db_xref="GI:930625832" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717703 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/082_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717703 VERSION KT717703.1 GI:930625833 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/082_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="10-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00421.1" /db_xref="GI:930625834" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717704 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/085_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717704 VERSION KT717704.1 GI:930625835 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/085_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="10-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00422.1" /db_xref="GI:930625836" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717705 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/110_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717705 VERSION KT717705.1 GI:930625837 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/110_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="11-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00423.1" /db_xref="GI:930625838" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717706 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/122_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717706 VERSION KT717706.1 GI:930625839 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/122_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="10-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00424.1" /db_xref="GI:930625840" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717707 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/148_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717707 VERSION KT717707.1 GI:930625841 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/148_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="15-Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00425.1" /db_xref="GI:930625842" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 LOCUS KT717708 615 bp RNA linear VRL 03-OCT-2015 DEFINITION Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/172_06_2015 spike protein (S) gene, partial cds. ACCESSION KT717708 VERSION KT717708.1 GI:930625843 KEYWORDS . SOURCE Middle East respiratory syndrome coronavirus (MERS-CoV) ORGANISM Middle East respiratory syndrome coronavirus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Nidovirales; Coronaviridae; Coronavirinae; Betacoronavirus; unclassified Betacoronavirus. REFERENCE 1 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Outbreak of Middle East Respiratory Syndrome in Two Hospitals in South Korea JOURNAL Unpublished REFERENCE 2 (bases 1 to 615) AUTHORS Kim,Y.-S. and Cho,N.-H. TITLE Direct Submission JOURNAL Submitted (07-SEP-2015) Department of Microbiology and Immunology, Seoul Naitonal University College of Medicine, 103 Daehak-ro, Jongno-gu, Seoul, Seoul 110-799, South Korea COMMENT ##Assembly-Data-START## Sequencing Technology :: Sanger dideoxy sequencing ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..615 /organism="Middle East respiratory syndrome coronavirus" /mol_type="genomic RNA" /isolate="MERS-CoV/KOR/CNUH_SNU/172_06_2015" /isolation_source="sputum" /host="Homo sapiens" /db_xref="taxon:1335626" /country="South Korea" /collection_date="Jun-2015" /PCR_primers="fwd_name: vs804, fwd_seq: tcaggttgatcaacttaatagt, rev_name: vs805, rev_seq: ttgagtaatgccaacaccgtt" gene <1..>615 /gene="S" CDS <1..>615 /gene="S" /note="MERS-CoV spike protein" /codon_start=1 /product="spike protein" /protein_id="ALG00426.1" /db_xref="GI:930625844" /translation="SYFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQ LLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDFNLTLLEPV SISTGSRSARSAIEDLLFDKVTIADPGYMQGYDDCMQQGPASARDLICAQYVAGYKVL PPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRL" ORIGIN 1 agttatttta aattaagtat acctactaat ttttcctttg gtgtgactca ggagtacatt 61 cagacaacca ttcagaaagt tactgttgat tgtaaacagt acgtttgcaa tggtttccag 121 aagtgtgagc aattactgcg cgagtatggc cagttttgtt ccaaaataaa ccaggctctc 181 catggtgcca atttacgcca ggatgattct gtacgtaatt tgtttgcgag cgtgaaaagc 241 tctcaatcat ctcctatcat accaggtttt ggaggtgact ttaatttgac acttctagaa 301 cctgtttcta tatctactgg cagtcgtagt gcacgtagtg ctattgagga tttgctattt 361 gacaaagtca ctatagctga tcctggttat atgcaaggtt acgatgattg tatgcagcaa 421 ggtccagcat cagctcgtga tcttatttgt gctcaatatg tggctggtta taaagtatta 481 cctcctctta tggatgttaa tatggaagcc gcgtacactt catctttgct tggcagcata 541 gcaggtgttg gctggactgc tggcttatcc tcctttgctg ctattccatt tgcacagagt 601 attttttata ggtta Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 KT717708.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/172_06_2015 spike protein (S) gene, partial cdsKT717707.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/148_06_2015 spike protein (S) gene, partial cdsKT717706.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/122_06_2015 spike protein (S) gene, partial cdsKT717705.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/110_06_2015 spike protein (S) gene, partial cdsKT717704.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/085_06_2015 spike protein (S) gene, partial cdsKT717703.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/082_06_2015 spike protein (S) gene, partial cdsKT717702.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/054_06_2015 spike protein (S) gene, partial cdsKT717701.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/038_06_2015 spike protein (S) gene, partial cdsKT717700.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/031_06_2015 spike protein (S) gene, partial cdsKT717699.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/030_06_2015 spike protein (S) gene, partial cdsKT717698.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/024_06_2015 spike protein (S) gene, partial cdsKT717697.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/023_06_2015 spike protein (S) gene, partial cdsKT717696.1Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/CNUH_SNU/016_05_2015 spike protein (S) gene, partial cds Link to comment Share on other sites More sharing options...
niman Posted October 9, 2015 Author Report Share Posted October 9, 2015 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KT036374.1|Middle East respiratory syndrome coronavirus isolate ChinaGD01 variant 2, partial genome11101110100%0.0100%KT036374.1Select seq gb|KT036373.1|Middle East respiratory syndrome coronavirus isolate ChinaGD01 variant 1, partial genome11101110100%0.0100%KT036373.1Select seq gb|KT036372.1|Middle East respiratory syndrome coronavirus isolate ChinaGD01, partial genome11101110100%0.0100%KT036372.1Select seq gb|KT026456.1|Middle East respiratory syndrome coronavirus isolate Hu/Riyadh_KSA_4050_2015, complete genome11101110100%0.0100%KT026456.1Select seq gb|KT026454.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_4050_2015, complete genome11101110100%0.0100%KT026454.1Select seq gb|KT026453.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh_KSA_2959_2015, complete genome11101110100%0.0100%KT026453.1Select seq gb|KT006149.2|Middle East respiratory syndrome coronavirus strain ChinaGD01, complete genome11101110100%0.0100%KT006149.2Select seq gb|KT029139.1|Middle East respiratory syndrome coronavirus isolate MERS-CoV/KOR/KNIH/002_05_2015, complete genome11041104100%0.099%KT029139.1Select seq gb|KM027288.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_551/KSA/2014 spike protein (S) gene, complete cds11041104100%0.099%KM027288.1Select seq gb|KT225476.2|Middle East respiratory syndrome coronavirus isolate MERS-CoV/THA/CU/17_06_2015, complete genome11011101100%0.099%KT225476.2Select seq gb|KP405227.1|Middle East respiratory syndrome coronavirus isolate Al-Ahsa KSA_Camel_C9 spike protein gene, complete cds11011101100%0.099%KP405227.1Select seq gb|KP405226.1|Middle East respiratory syndrome coronavirus isolate Al-Ahsa KSA_Camel_C7 spike protein gene, complete cds11011101100%0.099%KP405226.1Select seq gb|KP405225.1|Middle East respiratory syndrome coronavirus isolate Al-Ahsa KSA_Camel_C8 spike protein gene, complete cds11011101100%0.099%KP405225.1Select seq gb|KM027286.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_351/KSA/2014 spike protein (S) gene, complete cds11011101100%0.099%KM027286.1Select seq gb|KM027285.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_349/KSA/2014 spike protein (S) gene, complete cds11011101100%0.099%KM027285.1Select seq gb|KM027284.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_345/KSA/2014 spike protein (S) gene, complete cds11011101100%0.099%KM027284.1Select seq gb|KM027279.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_059/KSA/2014 spike protein (S) gene, complete cds11011101100%0.099%KM027279.1Select seq gb|KM027277.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_042/KSA/2014 spike protein (S) gene, complete cds11011101100%0.099%KM027277.1Select seq gb|KJ156864.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_4c_2013 S protein gene, partial cds11011101100%0.099%KJ156864.1Select seq gb|KJ156920.1|Middle East respiratory syndrome coronavirus isolate Riyadh_17b_2013 ORF1ab gene, partial cds; and S protein gene, complete cds11011101100%0.099%KJ156920.1Select seq gb|KJ156908.1|Middle East respiratory syndrome coronavirus isolate Riyadh_6d_2013 ORF1ab and S protein genes, partial cds11011101100%0.099%KJ156908.1Select seq gb|KF961222.1|Middle East respiratory syndrome coronavirus isolate Qatar4, complete genome11011101100%0.099%KF961222.1Select seq gb|KF961221.1|Middle East respiratory syndrome coronavirus isolate Qatar3, complete genome11011101100%0.099%KF961221.1Select seq gb|KF600628.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_1_2013, complete genome11011101100%0.099%KF600628.1Select seq gb|KJ156936.1|Middle East respiratory syndrome coronavirus isolate Riyadh_10b_2013 ORF1ab gene, partial cds; and S protein gene, complete cds10971097100%0.099%KJ156936.1Select seq gb|KJ156934.1|Middle East respiratory syndrome coronavirus isolate Riyadh_14_2013, complete genome10971097100%0.099%KJ156934.1Select seq gb|KJ156910.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_2_2013, complete genome10971097100%0.099%KJ156910.1Select seq gb|KP719933.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1209/2014, complete genome10951095100%0.099%KP719933.1Select seq gb|KP719932.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1243.12/2014, complete genome10951095100%0.099%KP719932.1Select seq gb|KP719931.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1339.2/2014, complete genome10951095100%0.099%KP719931.1Select seq gb|KM210278.1|Middle East respiratory syndrome coronavirus isolate England/3/2013, complete genome10951095100%0.099%KM210278.1Select seq gb|KM210277.1|Middle East respiratory syndrome coronavirus isolate England/4/2013, complete genome10951095100%0.099%KM210277.1Select seq gb|KP209313.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_26_2014, complete genome10951095100%0.099%KP209313.1Select seq gb|KP209310.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi/Gayathi_UAE_2_2014, complete genome10951095100%0.099%KP209310.1Select seq gb|KP209309.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_30_2014, complete genome10951095100%0.099%KP209309.1Select seq gb|KP209308.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_16_2014, complete genome10951095100%0.099%KP209308.1Select seq gb|KP209307.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_18_2014, complete genome10951095100%0.099%KP209307.1Select seq gb|KP209306.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_8_2014, complete genome10951095100%0.099%KP209306.1Select seq gb|KM027262.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_683/KSA/2014, complete genome10951095100%0.099%KM027262.1Select seq gb|KM027278.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2014KSA_057/KSA/2014 spike protein (S) gene, complete cds10951095100%0.099%KM027278.1Select seq gb|KM015348.1|Middle East respiratory syndrome coronavirus isolate England/2/2013, complete genome10951095100%0.099%KM015348.1Select seq gb|KJ858499.1|Middle East respiratory syndrome coronavirus isolate Netherlands_1_2014 spike protein (S) gene, partial cds10951095100%0.099%KJ858499.1Select seq gb|KJ813439.1|Middle East respiratory syndrome coronavirus strain Indiana/USA-1_Saudi Arabia_2014, complete genome10951095100%0.099%KJ813439.1Select seq gb|KJ713299.1|Middle East respiratory syndrome coronavirus isolate KSA-CAMEL-376, complete genome10951095100%0.099%KJ713299.1Select seq gb|KJ156870.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_24e_2013 S protein gene, partial cds10951095100%0.099%KJ156870.1Select seq gb|KJ156954.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_5c_2013 ORF1ab and S protein genes, partial cds10951095100%0.099%KJ156954.1Select seq gb|KJ156930.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_28f_2013 ORF1ab and S protein genes, partial cds10951095100%0.099%KJ156930.1Select seq gb|KJ156939.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_27b_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds10951095100%0.099%KJ156939.1Select seq gb|KJ156911.1|Middle East respiratory syndrome coronavirus isolate Riyadh_11b_2013 ORF1ab gene, partial cds; S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, and M protein genes, complete cds; N protein gene, partial cds; and ORF8b-like gene, complete sequence10951095100%0.099%KJ156911.1Select seq gb|KJ156905.1|Middle East respiratory syndrome coronavirus isolate Riyadh_7b_2013 ORF1ab gene, partial cds; S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, and M protein genes, complete cds; N protein gene, partial cds; and ORF8b gene, complete cds10951095100%0.099%KJ156905.1Select seq gb|KJ156901.1|Middle East respiratory syndrome coronavirus isolate Riyadh_12b_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds10951095100%0.099%KJ156901.1Select seq gb|KJ156876.1|Middle East respiratory syndrome coronavirus isolate Taif_2b_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds10951095100%0.099%KJ156876.1Select seq gb|KJ156873.1|Middle East respiratory syndrome coronavirus isolate Riyadh_13b_2013 ORF1ab gene, partial cds; S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, and M protein genes, complete cds; N protein gene, partial cds; and ORF8b gene, complete cds10951095100%0.099%KJ156873.1Select seq gb|KJ156872.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_26c_2013 ORF1ab gene, partial cds; and S protein, ORF3, ORF4a, ORF4b, ORF5, E protein, M protein, N protein, and ORF8b genes, complete cds10951095100%0.099%KJ156872.1Select seq gb|KJ156942.1|Middle East respiratory syndrome coronavirus isolate Riyadh_8b_2013, partial genome10951095100%0.099%KJ156942.1Select seq gb|KJ156874.1|Middle East respiratory syndrome coronavirus isolate Hafr-Al-Batin_6_2013, complete genome10951095100%0.099%KJ156874.1Select seq gb|KJ156869.1|Middle East respiratory syndrome coronavirus isolate Riyadh_9_2013, complete genome10951095100%0.099%KJ156869.1Select seq gb|KJ156866.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_25_2013, complete genome10951095100%0.099%KJ156866.1Select seq gb|KF600652.1|Middle East respiratory syndrome coronavirus isolate Riyadh_2_2012, complete genome10951095100%0.099%KF600652.1Select seq gb|KF600651.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_18_2013, complete genome10951095100%0.099%KF600651.1Select seq gb|KF600647.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_17_2013, complete genome10951095100%0.099%KF600647.1Select seq gb|KF600645.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_15_2013, complete genome10951095100%0.099%KF600645.1Select seq gb|KF600644.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_16_2013, complete genome10951095100%0.099%KF600644.1Select seq gb|KF600643.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_14b_2013, partial genome10951095100%0.099%KF600643.1Select seq gb|KF600636.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_11c_2013, partial genome10951095100%0.099%KF600636.1Select seq gb|KF600634.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_21_2013, complete genome10951095100%0.099%KF600634.1Select seq gb|KF600632.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_19_2013, complete genome10951095100%0.099%KF600632.1Select seq gb|KF600631.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_22e_2013, partial genome10951095100%0.099%KF600631.1Select seq gb|KF600630.1|Middle East respiratory syndrome coronavirus isolate Buraidah_1_2013, complete genome10951095100%0.099%KF600630.1Select seq gb|KF600627.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_12_2013, complete genome10951095100%0.099%KF600627.1Select seq gb|KF600626.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_8c_2013, partial genome10951095100%0.099%KF600626.1Select seq gb|KF600623.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_7b_2013, partial genome10951095100%0.099%KF600623.1Select seq gb|KF600620.1|Middle East respiratory syndrome coronavirus isolate Bisha_1_2012, complete genome10951095100%0.099%KF600620.1Select seq gb|KF600612.1|Middle East respiratory syndrome coronavirus isolate Riyadh_1_2012, complete genome10951095100%0.099%KF600612.1Select seq gb|KF186565.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_3_2013, complete genome10951095100%0.099%KF186565.1Select seq gb|KF186567.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_1_2013, complete genome10951095100%0.099%KF186567.1Select seq gb|KF186566.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_2_2013, complete genome10951095100%0.099%KF186566.1Select seq gb|KF186564.1|Middle East respiratory syndrome coronavirus isolate Al-Hasa_4_2013, complete genome10951095100%0.099%KF186564.1Select seq gb|KJ156916.1|Middle East respiratory syndrome coronavirus isolate Madinah_3b_2013, partial genome10941094100%0.099%KJ156916.1Select seq gb|KT156561.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2874_2013, complete genome10921092100%0.099%KT156561.1Select seq gb|KT156560.1|Middle East respiratory syndrome coronavirus strain Hu/Oman_2285_2013, complete genome10921092100%0.099%KT156560.1Select seq gb|KJ361503.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_Isolate_Sanger, complete genome10921092100%0.099%KJ361503.1Select seq gb|KJ361502.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_InSpu_Sanger, complete genome10921092100%0.099%KJ361502.1Select seq gb|KJ361501.1|Middle East respiratory syndrome coronavirus isolate Hu-France - FRA2_130569-2013_IS_HTS, complete genome10921092100%0.099%KJ361501.1Select seq gb|KJ361500.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_Sanger, complete genome10921092100%0.099%KJ361500.1Select seq gb|KJ361499.1|Middle East respiratory syndrome coronavirus isolate Hu-France (UAE) - FRA1_1627-2013_BAL_HTS, partial genome10921092100%0.099%KJ361499.1Select seq gb|KP719930.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.14/2014, complete genome10921092100%0.099%KP719930.1Select seq gb|KP719929.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.11/2014, complete genome10921092100%0.099%KP719929.1Select seq gb|KP719928.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.10/2014, complete genome10921092100%0.099%KP719928.1Select seq gb|KP719927.1|Middle East respiratory syndrome coronavirus isolate Camel/UAE/D1164.9/2014, complete genome10921092100%0.099%KP719927.1Select seq gb|KP236092.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi/Oman_UAE_7_2013 S protein (S) gene, complete cds10921092100%0.099%KP236092.1Select seq gb|KP209312.1|Middle East respiratory syndrome coronavirus strain Abu Dhabi_UAE_9_2013, complete genome10921092100%0.099%KP209312.1Select seq gb|KF811036.1|Middle East respiratory syndrome coronavirus strain Tunisia-Qatar_2013 spike protein gene, complete cds10921092100%0.099%KF811036.1Select seq gb|KJ650297.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 1, complete genome10921092100%0.099%KJ650297.1Select seq gb|KJ650296.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 19Dam, complete genome10921092100%0.099%KJ650296.1Select seq gb|KJ650295.1|Middle East respiratory syndrome coronavirus isolate KFU-HKU 13, complete genome10921092100%0.099%KJ650295.1Select seq gb|KF745068.1|Middle East respiratory syndrome coronavirus isolate FRA/UAE, complete genome10921092100%0.099%KF745068.1Select seq gb|KJ156945.1|Middle East respiratory syndrome coronavirus isolate Asir_2f_2013 ORF1ab and S protein genes, partial cds10901090100%0.099%KJ156945.1Select seq gb|KR011266.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2049/2015, complete genome10861086100%0.099%KR011266.1Select seq gb|KR011265.1|Middle East respiratory syndrome coronavirus strain Hu/Riyadh-KSA-2466/2015, complete genome10851085100%0.099%KR011265.1 Link to comment Share on other sites More sharing options...
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