niman Posted July 8, 2016 Report Share Posted July 8, 2016 Paul-Ehrlich-Institute has released a full 2013 Zika sequence collected Oct 25, 2013, PF13/251013-18. This isolate is distinct from the only prior full Zika sequence (collected Nov 28, 2013, H/PF/2013). Link to comment Share on other sites More sharing options...
niman Posted July 8, 2016 Author Report Share Posted July 8, 2016 LOCUS KX369547 10769 bp RNA linear VRL 05-JUL-2016 DEFINITION Zika virus strain PF13/251013-18, complete genome. ACCESSION KX369547 VERSION KX369547.1 GI:1040461413 KEYWORDS . SOURCE Zika virus ORGANISM Zika virus Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus. REFERENCE 1 (bases 1 to 10769) AUTHORS Troesemeier,J.-H., Musso,D., Bluemel,J. and Baylis,S.A. TITLE Genome sequence of a candidate World Health Organization reference strain for Zika virus for nucleic acid testing JOURNAL Unpublished REFERENCE 2 (bases 1 to 10769) AUTHORS Troesemeier,J.-H., Musso,D., Bluemel,J. and Baylis,S.A. TITLE Direct Submission JOURNAL Submitted (08-JUN-2016) Microbiology, Paul-Ehrlich-Institute, Paul-Ehrlich-Str. 51-59, Langen, Hessen 63225, Germany COMMENT ##Assembly-Data-START## Assembly Method :: MIRA v. 4.0.2; BWA v. 0.7.13 Coverage :: 120 Sequencing Technology :: Illumina ##Assembly-Data-END## FEATURES Location/Qualifiers source 1..10769 /organism="Zika virus" /mol_type="genomic RNA" /strain="PF13/251013-18" /isolation_source="serum" /host="Homo sapiens" /db_xref="taxon:64320" /country="French Polynesia" /collection_date="25-Oct-2013" 5'UTR 1..90 CDS 91..10362 /codon_start=1 /product="polyprotein" /protein_id="ANN44857.1" /db_xref="GI:1040461414" /translation="MKNPKKKSGGFRIVNMLKRGVARVSPFGGLKRLPAGLLLGHGPI RMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKEKK RRGADTSVGIVGLLLTTAMAAEVTRRGSAYYMYLDRNDAGEAISFPTTLGMNKCYIQI MDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRRAVT LPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGLALAAAAIAWLLGSSTSQKV IYLVMILLIAPAYSIRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIE LVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWG NGCGLFGKGSLVTCAKFACSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHET DENRAKVEITPNSPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWF HDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAE MDGAKGRLSSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAG TDGPCKVPAQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVG EKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGALNSLGKGIHQIFG AAFKSLFGGMSWFSQILIGTLLMWLGLNTKNGSISLMCLALGGVLIFLSTAVSADVGC SVDFSKKETRCGTGVFVYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEDGICGISSVSR MENIMWRSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGK SYFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLE CDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGI EESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETCGTR GPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA GSTDHMDHFSLGVLVILLMVQEGLKKRMTTKIIISTSMAVLVAMILGGFSMSDLAKLA ILMGATFAEMNTGGDVAHLALIAAFKVRPALLVSFIFRANWTPRESMLLALASCLLQT AISALEGDLMVLINGFALAWLAIRAMVVPRTDNITLAILAALTPLARGTLLVAWRAGL ATCGGFMLLSLKGKGSVKKNLPFVMALGLTAVRLVDPINVVGLLLLTRSGKRSWPPSE VLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKD AEVTGNSPRLDVALDESGDFSLVEDDGPPMREIILKVVLMTICGMNPIAIPFAAGAWY VYVKTGKRSGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMW HVTKGSALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGHSEVQLLAVPPGERARN IQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAIT QGRREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAP TRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLY IMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEV PERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKT KHQEWDFVVTTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQR RGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADK VAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIM EDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKRGAAFGVMEALGTL PGHMTERFQEAIDNLAVLMRAETGSRPYKAAAAQLPETLETIMLLGLLGTVSLGIFFV LMRNKGIGKMGFGMVTLGASAWLMWLSEIEPARIACVLIVVFLLLVVLIPEPEKQRSP QDNQMAIIIMVAVGLLGLITANELGWLERTKSDLSHLMGRREEGATIGFSMDIDLRPA SAWAIYAALTTFITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFYAWDFGVPL LMIGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIV VTDIDTMTIDPQVEKKMGQVLLIAVAVSSAILSRTAWGWGEAGALITAATSTLWEGSP NKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQ MSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKLRWLVERGYLQPYGK VIDLGCGRGGWSYYAATIRKVQEVKGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFH MAAEPCDTLLCDIGESSSSPEVEEARTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMM ETLERLQRRYGGGLVRVPLSRNSTHEMYWVSGAKSNTIKSVSTTSQLLLGRMDGPRRP VKYEEDVNLGSGTRAVVSCAEAPNMKIIGNRIERIRSEHAETWFFDENHPYRTWAYHG SYEAPTQGSASSLINGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPD PQEGTRQVMSMVSSWLWKELGKHKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAV EAVNDPRFWALVDKEREHHLRGECQSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGA RFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYVLEEMSRIPGGRMYADDTAGWD TRISRFDLENEALITNQMEKGHRALALAIIKYTYQNKVVKVLRPAEKGKTVMDIISRQ DQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRRSEKVTNWLQSNGWDR LKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWDNWEEVPFCSHH FNKLHLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRR DLRLMANAICSSVPVDWVPTGRTTWSIHGKGEWMTTEDMLVVWNRVWIEENDHMEDKT PVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKNTVNMVRRIIGDEEKYMDYLST QVRYLGEEGSTPGVL" mat_peptide 91..465 /product="capsid protein" mat_peptide 466..735 /product="propeptide" mat_peptide 736..960 /product="membrane protein" mat_peptide 961..2475 /product="envelope protein" mat_peptide 2476..3561 /product="NS1" mat_peptide 3562..4215 /product="NS2A" mat_peptide 4216..4647 /product="NS2B" mat_peptide 4648..6456 /product="NS3" mat_peptide 6457..6897 /product="NS4A" mat_peptide 6898..8403 /product="NS4B" mat_peptide 8404..10359 /product="NS5" 3'UTR 10363..10661 ORIGIN 1 gaatcagact gcgacagttc gagtttgaag cgaaagctag caacagtatc aacaggtttt 61 atttggattt ggaaacgaga gtttctggtc atgaaaaacc caaaaaagaa atccggagga 121 ttccggattg tcaatatgct aaaacgcgga gtagcccgtg tgagcccctt tgggggcttg 181 aagaggctgc cagccggact tctgctgggt catgggccca tcaggatggt cttggcgatt 241 ctagcctttt tgagattcac ggcaatcaag ccatcactgg gtctcatcaa tagatggggt 301 tcagtgggga aaaaagaggc tatggaaata ataaagaagt tcaagaaaga tctggctgcc 361 atgctgagaa taatcaatgc taggaaggag aagaagagac gaggcgcaga tactagtgtc 421 ggaattgttg gcctcctgct gaccacagct atggcagcgg aggtcactag acgtgggagt 481 gcatactata tgtacttgga cagaaacgat gctggggagg ccatatcttt tccaaccaca 541 ttggggatga ataagtgtta tatacagatc atggatcttg gacacatgtg tgatgccacc 601 atgagctatg aatgccctat gctggatgag ggggtggaac cagatgacgt cgattgttgg 661 tgcaacacga cgtcaacttg ggttgtgtac ggaacctgcc atcacaaaaa aggtgaagca 721 cggagatcta gaagagctgt gacgctcccc tcccattcca ctagaaagct gcaaacgcgg 781 tcgcaaacct ggttggaatc aagagaatac acaaagcact tgattagagt cgaaaattgg 841 atattcagga accctggcct cgcgttagca gcagctgcca tcgcttggct tttgggaagc 901 tcaacgagcc aaaaagtcat atacttggtc atgatactgc tgattgcccc ggcatacagc 961 atcaggtgca taggagtcag caatagggac tttgtggaag gtatgtcagg tgggacttgg 1021 gttgatgttg tcttggaaca tggaggttgt gtcaccgtaa tggcacagga caaaccgact 1081 gtcgacatag agctggttac aacaacagtc agcaacatgg cggaggtaag atcctactgc 1141 tatgaggcat caatatcaga catggcttcg gacagccgct gcccaacaca aggtgaagcc 1201 taccttgaca agcaatcaga cactcaatat gtctgcaaaa gaacgttagt ggacagaggc 1261 tggggaaatg gatgtggact ttttggcaaa gggagcctgg tgacatgcgc taagtttgca 1321 tgctccaaga aaatgaccgg gaagagcatc cagccagaga atctggagta ccggataatg 1381 ctgtcagttc atggctccca gcacagtggg atgatcgtta atgacacagg acatgaaact 1441 gatgagaata gagcgaaggt tgagataacg cccaattcac caagagccga agccaccctg 1501 gggggttttg gaagcctagg acttgattgt gaaccgagga caggccttga cttttcagat 1561 ttgtattact tgactatgaa taacaagcac tggttggttc acaaggagtg gttccacgac 1621 attccattac cttggcacgc tggggcagac accggaactc cacactggaa caacaaagaa 1681 gcactggtag agttcaagga cgcacatgcc aaaaggcaaa ctgtcgtggt tctagggagt 1741 caagaaggag cagttcacac ggcccttgct ggagctctgg aggctgagat ggatggtgca 1801 aagggaaggc tgtcctctgg ccacttgaaa tgtcgcctga aaatggataa acttagattg 1861 aagggcgtgt catactcctt gtgtaccgca gcgttcacat tcaccaagat cccggctgaa 1921 acactgcacg ggacagtcac agtggaggta cagtacgcag ggacagatgg accttgcaag 1981 gttccagctc agatggcggt ggacatgcaa actctgaccc cagttgggag gttgataacc 2041 gctaaccccg taatcactga aagcactgag aactctaaga tgatgctgga acttgatcca 2101 ccatttgggg actcttacat tgtcatagga gtcggggaga agaagatcac ccaccactgg 2161 cacaggagtg gcagcaccat tggaaaagca tttgaagcca ctgtgagagg tgccaagaga 2221 atggcagtct tgggagacac agcctgggac tttggatcag ttggaggcgc tctcaactca 2281 ttgggcaagg gcatccatca aatttttgga gcagctttca aatcattgtt tggaggaatg 2341 tcctggttct cacaaattct cattggaacg ttgctgatgt ggttgggtct gaacacaaag 2401 aatggatcta tttcccttat gtgcttggcc ttagggggag tgttgatctt cttatccaca 2461 gccgtctctg ctgatgtggg gtgctcggtg gacttctcaa agaaggagac gagatgcggt 2521 acaggggtgt tcgtctataa cgacgttgaa gcctggaggg acaggtacaa gtaccatcct 2581 gactcccccc gtagattggc agcagcagtc aagcaagcct gggaagatgg tatctgtggg 2641 atctcctctg tttcaagaat ggaaaacatc atgtggagat cagtagaagg ggagctcaac 2701 gcaatcctgg aagagaatgg agttcaactg acggtcgttg tgggatctgt aaaaaacccc 2761 atgtggagag gtccacagag attgcccgtg cctgtgaacg agctgcccca cggctggaag 2821 gcttggggga aatcgtactt cgtcagagca gcaaagacaa ataacagctt tgtcgtggat 2881 ggtgacacac tgaaggaatg cccactcgaa catagagcat ggaacagctt tcttgtggag 2941 gatcatgggt tcggggtatt tcacactagt gtctggctca aggttagaga agattattca 3001 ttagagtgtg atccagccgt tattggaaca gctgttaagg gaaaggaggc tgtacacagt 3061 gatctaggct actggattga gagtgagaag aatgacacat ggaggctgaa gagggcccat 3121 ctgatcgaga tgaaaacatg tgaatggcca aagtcccaca cattgtggac agatggaata 3181 gaagagagtg atctgatcat acccaagtct ttagctgggc cactcagcca tcacaatacc 3241 agagagggct acaggaccca aatgaaaggg ccatggcaca gtgaagagct tgaaattcgg 3301 tttgaggaat gcccaggcac taaggtccac gtggaggaaa catgtggaac aagaggacca 3361 tctctgagat caaccactgc aagcggaagg gtgatcgagg aatggtgctg cagggagtgc 3421 acaatgcccc cactgtcgtt ccgggctaaa gatggctgtt ggtatggaat ggagataagg 3481 cccaggaaag aaccagaaag taacttagta aggtcaatgg tgactgcagg atcaactgat 3541 cacatggatc acttctccct tggagtgctt gtgattctgc tcatggtgca ggaagggctg 3601 aagaagagaa tgaccacaaa gatcatcata agcacatcaa tggcagtgct ggtagctatg 3661 atcctgggag gattttcaat gagtgacctg gctaagcttg caattttgat gggtgccacc 3721 ttcgcggaaa tgaacactgg aggagatgta gctcatctgg cgctgatagc ggcattcaaa 3781 gtcagaccag cgttgctggt atctttcatc ttcagagcta attggacacc ccgtgaaagc 3841 atgctgctgg ccttggcctc gtgtcttttg caaactgcga tctccgcctt ggaaggcgac 3901 ctgatggttc tcatcaatgg ttttgctttg gcctggttgg caatacgagc gatggttgtt 3961 ccacgcactg ataacatcac cttggcaatc ctggctgctc tgacaccact ggcccggggc 4021 acactgcttg tggcgtggag agcaggcctt gctacttgcg gggggtttat gctcctctct 4081 ctgaagggaa aaggcagtgt gaagaagaac ttaccatttg tcatggccct gggactaacc 4141 gctgtgaggc tggtcgaccc catcaacgtg gtgggactgc tgttgctcac aaggagtggg 4201 aagcggagct ggccccctag cgaagtactc acagctgttg gcctgatatg cgcattggct 4261 ggagggttcg ccaaggcaga tatagagatg gctgggccca tggccgcggt cggtctgcta 4321 attgtcagtt acgtggtctc aggaaagagt gtggacatgt acattgaaag agcaggtgac 4381 atcacatggg aaaaagatgc ggaagtcact ggaaacagtc cccggctcga tgtggcgcta 4441 gatgagagtg gtgatttctc cctggtggag gatgacggtc cccccatgag agagatcata 4501 ctcaaggtgg tcctgatgac catctgtggc atgaacccaa tagccatacc ctttgcagct 4561 ggagcgtggt acgtatacgt gaagactgga aaaaggagtg gtgctctatg ggatgtgcct 4621 gctcccaagg aagtaaaaaa gggggagacc acagatggag tgtacagagt aatgactcgt 4681 agactgctag gttcaacaca agttggagtg ggagttatgc aagagggggt ctttcacact 4741 atgtggcacg tcacaaaagg atccgcgctg agaagcggtg aagggagact tgatccatac 4801 tggggagatg tcaagcagga tctggtgtca tactgtggtc catggaagct agatgccgcc 4861 tgggacgggc acagcgaggt gcagctcttg gccgtgcccc ccggagagag agcgaggaac 4921 atccagactc tgcccggaat atttaagaca aaggatgggg acattggagc ggttgcgctg 4981 gattacccag caggaacttc aggatctcca atcctagaca agtgtgggag agtgatagga 5041 ctttatggca atggggtcgt gatcaaaaat gggagttatg ttagtgccat cacccaaggg 5101 aggagggagg aagagactcc tgttgagtgc ttcgagcctt cgatgctgaa gaagaagcag 5161 ctaactgtct tagacttgca tcctggagct gggaaaacca ggagagttct tcctgaaata 5221 gtccgtgaag ccataaaaac aagactccgt actgtgatct tagctccaac cagggttgtc 5281 gctgctgaaa tggaggaagc ccttagaggg cttccagtgc gttatatgac aacagcagtc 5341 aatgtcaccc actctggaac agaaatcgtc gacttaatgt gccatgccac cttcacttca 5401 cgtctactac agccaatcag agtccccaac tataatctgt atattatgga tgaggcccac 5461 ttcacagatc cctcaagtat agcagcaaga ggatacattt caacaagggt tgagatgggc 5521 gaggcggctg ccatcttcat gaccgccacg ccaccaggaa cccgtgacgc atttccggac 5581 tccaactcac caattatgga caccgaagtg gaagtcccag agagagcctg gagctcaggc 5641 tttgattggg tgacggatca ttctggaaaa acagtttggt ttgttccaag cgtgaggaac 5701 ggcaatgaga tcgcagcttg tctgacaaag gctggaaaac gggtcataca gctcagcaga 5761 aagacttttg agacagagtt ccagaaaaca aaacatcaag agtgggactt tgtcgtgaca 5821 actgacattt cagagatggg cgccaacttt aaagctgacc gtgtcataga ttccaggaga 5881 tgcctaaagc cggtcatact tgatggcgag agagtcattc tggctggacc catgcctgtc 5941 acacatgcca gcgctgccca gaggaggggg cgcataggca ggaatcccaa caaacctgga 6001 gatgagtatc tgtatggagg tgggtgcgca gagactgacg aagaccatgc acactggctt 6061 gaagcaagaa tgctccttga caatatttac ctccaagatg gcctcatagc ctcgctctat 6121 cgacctgagg ccgacaaagt agcagccatt gagggagagt tcaagcttag gacggagcaa 6181 aggaagacct ttgtggaact catgaaaaga ggagatcttc ctgtttggct ggcctatcag 6241 gttgcatctg ccggaataac ctacacagat agaagatggt gctttgatgg cacgaccaac 6301 aacaccataa tggaagacag tgtgccggca gaggtgtgga ccagacacgg agagaaaaga 6361 gtgctcaaac cgaggtggat ggacgccaga gtttgttcag atcatgcggc cctgaagtca 6421 ttcaaggagt ttgccgctgg gaaaagagga gcggcttttg gagtgatgga agccctggga 6481 acactgccag gacacatgac agagagattc caggaagcca ttgacaacct cgctgtgctc 6541 atgcgggcag agactggaag caggccttac aaagccgcgg cggcccaatt gccggagacc 6601 ctagagacca ttatgctttt ggggttgctg ggaacagtct cgctgggaat ctttttcgtc 6661 ttgatgagga acaagggcat agggaagatg ggctttggaa tggtgactct tggggccagc 6721 gcatggctca tgtggctctc ggaaattgag ccagccagaa ttgcatgtgt cctcattgtt 6781 gtgttcctat tgctggtggt gctcatacct gagccagaaa agcaaagatc tccccaggac 6841 aaccaaatgg caatcatcat catggtagca gtaggtcttc tgggcttgat taccgccaat 6901 gaactcggat ggttggagag aacaaagagt gacctaagcc atctaatggg aaggagagag 6961 gagggggcaa ccataggatt ctcaatggac attgacctgc ggccagcctc agcttgggcc 7021 atctatgctg ccttgacaac tttcattacc ccagccgtcc aacatgcagt gaccacttca 7081 tacaacaact actccttaat ggcgatggcc acgcaagctg gagtgttgtt tggtatgggc 7141 aaagggatgc cattctacgc atgggacttt ggagtcccgc tgctaatgat aggttgctac 7201 tcacaattaa cacccctgac cctaatagtg gccatcattt tgctcgtggc gcactacatg 7261 tacttgatcc cagggctgca ggcagcagct gcgcgtgctg cccagaagag aacggcagct 7321 ggcatcatga agaaccctgt tgtggatgga atagtggtga ctgacattga cacaatgaca 7381 attgaccccc aagtggagaa aaagatggga caggtgctac tcatagcagt agccgtctcc 7441 agcgccatac tgtcgcggac cgcctggggg tggggggagg ctggggccct gatcacagct 7501 gcaacttcca ctttgtggga aggctctccg aacaagtact ggaactcctc tacagccact 7561 tcactgtgta acatttttag gggaagttac ttggctggag cttctctaat ctacacagta 7621 acaagaaacg ctggcttggt caagagacgt gggggtggaa caggagagac cctgggagag 7681 aaatggaagg cccgcttgaa ccagatgtcg gccctggagt tctactccta caaaaagtca 7741 ggcatcaccg aggtgtgcag agaagaggcc cgccgcgccc tcaaggacgg tgtggcaacg 7801 ggaggccatg ctgtgtcccg aggaagtgca aagctgagat ggttggtgga gcggggatac 7861 ctgcagccct atggaaaggt cattgatctt ggatgtggca gagggggctg gagttactac 7921 gccgccacca tccgcaaagt tcaagaagtg aaaggataca caaaaggagg ccctggtcat 7981 gaagaaccca tgttggtgca aagctatggg tggaacatag tccgtcttaa gagtggggtg 8041 gacgtctttc atatggcggc tgagccgtgt gacacgttgc tgtgtgacat aggtgagtca 8101 tcatctagtc ctgaagtgga agaagcacgg acgctcagag tcctctccat ggtgggggat 8161 tggcttgaaa aaagaccagg agccttttgt ataaaagtgt tgtgcccata caccagcact 8221 atgatggaaa ccctggagcg actgcagcgt aggtatgggg gaggactggt cagagtgcca 8281 ctctcccgca actctacaca tgagatgtac tgggtctctg gagcgaaaag caacaccata 8341 aaaagtgtgt ccaccacgag ccagctcctc ttggggcgca tggacgggcc caggaggcca 8401 gtgaaatatg aggaggatgt gaatctcggc tctggcacgc gggctgtggt aagctgcgct 8461 gaagctccca acatgaagat cattggtaac cgcattgaaa ggatccgcag tgagcacgcg 8521 gaaacgtggt tctttgacga gaaccaccca tataggacat gggcttacca tggaagctat 8581 gaggccccca cacaagggtc agcgtcctct ctaataaacg gggttgtcag gctcctgtca 8641 aaaccctggg atgtggtgac tggagtcaca ggaatagcca tgaccgacac cacaccgtat 8701 ggtcagcaaa gagttttcaa ggaaaaagtg gacactaggg tgccagaccc ccaagaaggc 8761 actcgtcagg ttatgagcat ggtctcttcc tggttgtgga aagagctagg caaacacaaa 8821 cggccacgag tctgtaccaa agaagagttc atcaacaagg ttcgtagcaa tgcagcatta 8881 ggggcaatat ttgaagagga aaaagagtgg aagactgcag tggaagctgt gaacgatcca 8941 aggttctggg ctctagtgga caaggaaaga gagcaccacc tgagaggaga gtgccagagt 9001 tgtgtgtaca acatgatggg aaaaagagaa aagaaacaag gggaatttgg aaaggccaag 9061 ggcagccgcg ccatctggta tatgtggcta ggggctagat ttctagagtt cgaagccctt 9121 ggattcttga acgaggatca ctggatgggg agagagaact caggaggtgg tgttgaaggg 9181 ctgggattac aaagactcgg atatgtccta gaagagatga gtcgcatacc aggaggaagg 9241 atgtatgcag atgacactgc tggctgggac acccgcatca gcaggtttga tctggagaat 9301 gaagctctaa tcaccaacca aatggagaaa gggcacaggg ccttggcatt ggccataatc 9361 aagtacacat accaaaacaa agtggtaaag gtccttagac cagctgaaaa agggaagaca 9421 gttatggaca ttatttcgag acaagaccaa agggggagcg gacaagttgt cacttacgct 9481 cttaacacat ttaccaacct agtggtgcaa ctcattcgga atatggaggc tgaggaagtt 9541 ctagagatgc aagacttgtg gctgctgcgg aggtcagaga aagtgaccaa ctggttgcag 9601 agcaacggat gggataggct caaacgaatg gcagtcagtg gagatgattg cgttgtgaag 9661 ccaattgatg ataggtttgc acatgccctc aggttcttga atgatatggg aaaagttagg 9721 aaggacacac aagagtggaa accctcaact ggatgggaca actgggaaga agttccgttt 9781 tgctcccacc acttcaacaa gctccatctc aaggacggga ggtccattgt ggttccctgc 9841 cgccaccaag atgaactgat tggccgggcc cgcgtctctc caggggcggg atggagcatc 9901 cgggagactg cttgcctagc aaaatcatat gcgcaaatgt ggcagctcct ttatttccac 9961 agaagggacc tccgactgat ggccaatgcc atttgttcat ctgtgccagt tgactgggtt 10021 ccaactggga gaactacctg gtcaatccat ggaaagggag aatggatgac cactgaagac 10081 atgcttgtgg tgtggaacag agtgtggatt gaggagaacg accacatgga agacaagacc 10141 ccagttacga aatggacaga cattccctat ttgggaaaaa gggaagactt gtggtgtgga 10201 tctctcatag ggcacagacc gcgcaccacc tgggctgaga acattaaaaa cacagtcaac 10261 atggtgcgca ggatcatagg tgatgaagaa aagtacatgg actacctatc cacccaagtt 10321 cgctacttgg gtgaagaagg gtctacacct ggagtgctgt aagcaccaat cttagtgttg 10381 tcaggcctgc tagtcagcca cagcttgggg aaagctgtgc agcctgtgac ccccccagga 10441 gaagctggga aaccaagcct atagtcaggc cgagaacgcc atggcacgga agaagccatg 10501 ctgcctgtga gcccctcaga ggacactgag tcaaaaaacc ccacgcgctt ggaggcgcag 10561 gatgggaaaa gaaggtggcg accttcccca cccttcaatc tggggcctga actggagatc 10621 agctgtggat ctccagaaga gggactagtg gttagaggag accccccgga aaacgcaaaa 10681 cagcatattg acgctgggaa agaccagaga ctccatgagt ttccaccacg ctggccgcca 10741 ggcacagatc gccgaatagc ggcggccgg Link to comment Share on other sites More sharing options...
niman Posted July 8, 2016 Author Report Share Posted July 8, 2016 Sequences producing significant alignments:Select:AllNone Selected:0AlignmentsDownloadGenBankGraphicsDistance tree of resultsShow/hide columns of the table presenting sequences producing significant alignmentsSequences producing significant alignments:Select for downloading or viewing reportsDescriptionMax scoreTotal scoreQuery coverE valueIdentAccessionSelect seq gb|KX369547.1|Zika virus strain PF13/251013-18, complete genome1852518525100%0.0100%KX369547.1Select seq gb|KJ776791.1|Zika virus strain H/PF/2013 polyprotein gene, complete cds1848918489100%0.099%KJ776791.1Select seq gb|KU509998.3|Zika virus strain Haiti/1225/2014, complete genome1845318453100%0.099%KU509998.3Select seq gb|KX280026.1|Zika virus isolate Paraiba_01, complete genome1843518435100%0.099%KX280026.1Select seq gb|KX051563.1|Zika virus isolate Haiti/1/2016, complete genome1843518435100%0.099%KX051563.1Select seq gb|KU991811.1|Zika virus isolate Brazil/2016/INMI1 polyprotein gene, complete cds1842918429100%0.099%KU991811.1Select seq gb|KU321639.1|Zika virus strain ZikaSPH2015, complete genome1842918429100%0.099%KU321639.1Select seq gb|KU729218.1|Zika virus isolate BeH828305 polyprotein gene, complete cds1842018420100%0.099%KU729218.1Select seq gb|KU707826.1|Zika virus isolate SSABR1, complete genome1842018420100%0.099%KU707826.1Select seq gb|KU365779.1|Zika virus strain BeH819966 polyprotein gene, complete cds1842018420100%0.099%KU365779.1Select seq gb|KX262887.1|Zika virus isolate 103451, complete genome1841718417100%0.099%KX262887.1Select seq gb|KX197192.1|Zika virus isolate ZIKV/H.sapiens/Brazil/PE243/2015, complete genome1841718417100%0.099%KX197192.1Select seq gb|KX198135.1|Zika virus strain ZIKV/Homo sapiens/PAN/BEI-259634_V4/2016, complete genome1840818408100%0.099%KX198135.1Select seq gb|KX156776.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259364_V1-V2/2015, complete genome1840818408100%0.099%KX156776.1Select seq gb|KU926309.1|Zika virus isolate Rio-U1, complete genome1840818408100%0.099%KU926309.1Select seq gb|KU365780.1|Zika virus strain BeH815744 polyprotein gene, complete cds1840818408100%0.099%KU365780.1Select seq gb|KX117076.1|Zika virus isolate Zhejiang04, complete genome1840218402100%0.099%KX117076.1Select seq gb|KU940228.1|Zika virus isolate Bahia07, partial genome1840218402100%0.099%KU940228.1Select seq gb|KU527068.1|Zika virus strain Natal RGN, complete genome1840218402100%0.099%KU527068.1Select seq gb|KU647676.1|Zika virus strain MRS_OPY_Martinique_PaRi_2015 polyprotein gene, complete cds1840218402100%0.099%KU647676.1Select seq gb|KU365777.1|Zika virus strain BeH818995 polyprotein gene, complete cds1840218402100%0.099%KU365777.1Select seq gb|KU758877.1|Zika virus isolate 17271 polyprotein gene, complete cds1839918399100%0.099%KU758877.1Select seq gb|KX247646.1|Zika virus isolate Zika virus/Homo sapiens/COL/UF-1/2016, complete genome1839918399100%0.099%KX247646.1Select seq gb|KU501217.1|Zika virus strain 8375 polyprotein gene, complete cds1839918399100%0.099%KU501217.1Select seq gb|KU497555.1|Zika virus isolate Brazil-ZKV2015, complete genome183951839599%0.099%KU497555.1Select seq gb|KX185891.1|Zika virus isolate Zika virus/CN/SZ02/2016 polyprotein gene, complete cds1839318393100%0.099%KX185891.1Select seq gb|KX156774.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259359_V1-V3/2015, complete genome1839318393100%0.099%KX156774.1Select seq gb|KU963796.1|Zika virus isolate SZ-WIV01 polyprotein gene, complete cds1839318393100%0.099%KU963796.1Select seq gb|KU729217.2|Zika virus isolate BeH823339 polyprotein gene, complete cds1839318393100%0.099%KU729217.2Select seq gb|KU501216.1|Zika virus strain 103344 polyprotein gene, complete cds1839318393100%0.099%KU501216.1Select seq gb|KU820897.3|Zika virus isolate FLR polyprotein gene, complete cds1839018390100%0.099%KU820897.3Select seq gb|KX253996.1|Zika virus isolate ZKC2/2016, complete genome1839018390100%0.099%KX253996.1Select seq gb|KX247632.1|Zika virus isolate MEX_I_7 polyprotein gene, complete cds1839018390100%0.099%KX247632.1Select seq gb|KX156775.1|Zika virus strain ZIKV/Homo sapiens/PAN/CDC-259249_V1-V3/2015, complete genome1839018390100%0.099%KX156775.1Select seq gb|KX087102.1|Zika virus strain ZIKV/Homo sapiens/COL/FLR/2015, complete genome1839018390100%0.099%KX087102.1Select seq gb|KU955589.1|Zika virus isolate Z16006 polyprotein gene, complete cds1839018390100%0.099%KU955589.1Select seq gb|KU820899.2|Zika virus isolate ZJ03, complete genome1839018390100%0.099%KU820899.2Select seq gb|KU365778.1|Zika virus strain BeH819015 polyprotein gene, complete cds1839018390100%0.099%KU365778.1Select seq gb|KU312312.1|Zika virus isolate Z1106033 polyprotein gene, complete cds1839018390100%0.099%KU312312.1Select seq gb|KU866423.2|Zika virus isolate Zika virus/SZ01/2016/China polyprotein gene, complete cds1838418384100%0.099%KU866423.2Select seq gb|KU922960.1|Zika virus isolate MEX/InDRE/Sm/2016, complete genome1838418384100%0.099%KU922960.1Select seq gb|KX446951.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_I-7/2016, complete genome1838118381100%0.099%KX446951.1Select seq gb|KU937936.1|Zika virus isolate ZIKVNL00013 polyprotein gene, complete cds1838118381100%0.099%KU937936.1Select seq gb|KU926310.1|Zika virus isolate Rio-S1, complete genome1838118381100%0.099%KU926310.1Select seq gb|KU922923.1|Zika virus isolate MEX/InDRE/Lm/2016, complete genome1838118381100%0.099%KU922923.1Select seq gb|KU501215.1|Zika virus strain PRVABC59, complete genome1838118381100%0.099%KU501215.1Select seq gb|KX446950.1|Zika virus strain ZIKV/Aedes.sp/MEX/MEX_2-81/2016, complete genome1837518375100%0.099%KX446950.1Select seq gb|KX087101.2|Zika virus strain ZIKV/Homo sapiens/PRI/PRVABC59/2015, complete genome1837518375100%0.099%KX087101.2Select seq gb|KU870645.1|Zika virus isolate FB-GWUH-2016, complete genome1837518375100%0.099%KU870645.1Select seq gb|KX377337.1|Zika virus strain PRVABC-59, complete genome1837218372100%0.099%KX377337.1Select seq gb|KU853013.1|Zika virus isolate Dominican Republic/2016/PD2, complete genome1837218372100%0.099%KU853013.1Select seq gb|KU853012.1|Zika virus isolate Dominican Republic/2016/PD1, complete genome1837018370100%0.099%KU853012.1Select seq gb|KU820898.1|Zika virus isolate GZ01 polyprotein gene, complete cds1836318363100%0.099%KU820898.1Select seq gb|KX056898.1|Zika virus isolate Zika virus/GZ02/2016 polyprotein gene, complete cds1835718357100%0.099%KX056898.1Select seq gb|KU955590.1|Zika virus isolate Z16019 polyprotein gene, complete cds1835718357100%0.099%KU955590.1Select seq gb|KU740184.2|Zika virus isolate GD01 polyprotein gene, complete cds1835418354100%0.099%KU740184.2Select seq gb|KU761564.1|Zika virus isolate GDZ16001 polyprotein gene, complete cds1835418354100%0.099%KU761564.1Select seq gb|KU940224.1|Zika virus isolate Bahia09, partial genome183091830999%0.099%KU940224.1Select seq gb|KU744693.1|Zika virus isolate VE_Ganxian, complete genome1820418204100%0.099%KU744693.1Select seq gb|KU681081.3|Zika virus isolate Zika virus/H.sapiens-tc/THA/2014/SV0127- 14, complete genome1815018150100%0.099%KU681081.3Select seq gb|KU955593.1|Zika virus isolate Zika virus/H.sapiens-tc/KHM/2010/FSS13025, complete genome1784317843100%0.099%KU955593.1Select seq gb|JN860885.1|Zika virus isolate FSS13025 polyprotein gene, partial cds178431784399%0.099%JN860885.1Select seq gb|KF993678.1|Zika virus strain PLCal_ZV from Canada polyprotein gene, partial cds177781777898%0.099%KF993678.1Select seq gb|EU545988.1|Zika virus polyprotein gene, complete cds1768817688100%0.098%EU545988.1Select seq gb|KU681082.3|Zika virus isolate Zika virus/H.sapiens-tc/PHL/2012/CPC-0740, complete genome1753317533100%0.098%KU681082.3Select seq gb|HQ234499.1|Zika virus isolate P6-740 polyprotein gene, partial cds164931649399%0.096%HQ234499.1Select seq gb|KX377336.1|Zika virus strain P6-740, complete genome1648716487100%0.096%KX377336.1Select seq gb|KU720415.1|Zika virus strain MR 766 polyprotein gene, complete cds1331313313100%0.089%KU720415.1Select seq gb|HQ234498.1|Zika virus isolate MR_766 polyprotein gene, partial cds133081330899%0.089%HQ234498.1Select seq gb|KF383115.1|Zika virus strain ArB1362 polyprotein gene, complete cds1330213302100%0.089%KF383115.1Select seq gb|KX377335.1|Zika virus strain MR-766, complete genome1329913299100%0.089%KX377335.1Select seq gb|KF268949.1|Zika virus isolate ARB15076 polyprotein gene, complete cds1329713297100%0.089%KF268949.1Select seq gb|KF268948.1|Zika virus isolate ARB13565 polyprotein gene, complete cds1329713297100%0.089%KF268948.1Select seq dbj|LC002520.1|Zika virus genomic RNA, complete genome, strain: MR766-NIID1329013290100%0.089%LC002520.1Select seq gb|KF268950.1|Zika virus isolate ARB7701 polyprotein gene, complete cds1329013290100%0.089%KF268950.1Select seq gb|KU955595.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41671-DAK, complete genome1328613286100%0.089%KU955595.1Select seq gb|KF383119.1|Zika virus strain ArD158084 polyprotein gene, complete cds1328613286100%0.089%KF383119.1Select seq gb|DQ859059.1|Zika virus strain MR 766 polyprotein gene, complete cds1327913279100%0.089%DQ859059.1Select seq gb|KU955592.1|Zika virus isolate Zika virus/A.taylori-tc/SEN/1984/41662-DAK, complete genome1327713277100%0.089%KU955592.1Select seq gb|KU963573.1|Zika virus isolate ZIKV/Macaca mulatta/UGA/MR-766_SM150-V8/1947 polyprotein (GP1) gene, complete cds1327413274100%0.089%KU963573.1Select seq gb|KU955594.1|Zika virus isolate Zika virus/M.mulatta-tc/UGA/1947/MR-766, complete genome1327413274100%0.089%KU955594.1Select seq gb|KX198134.1|Zika virus strain ZIKV/Aedes africanus/SEN/DAK-AR-41524_A1C1-V2/1984, complete genome1326313746100%0.089%KX198134.1Select seq gb|KU955591.1|Zika virus isolate Zika virus/A.africanus-tc/SEN/1984/41525-DAK, complete genome1325913259100%0.089%KU955591.1Select seq gb|KF383116.1|Zika virus strain ArD7117 polyprotein gene, complete cds1324313243100%0.089%KF383116.1Select seq gb|AY632535.2|Zika virus strain MR 766, complete genome1323213232100%0.089%AY632535.2Select seq gb|HQ234501.1|Zika virus isolate ArD_41519 polyprotein gene, partial cds132271322799%0.089%HQ234501.1Select seq gb|KF383117.1|Zika virus strain ArD128000 polyprotein gene, complete cds1316413164100%0.088%KF383117.1Select seq gb|KU963574.1|Zika virus isolate ZIKV/Homo sapiens/NGA/IbH-30656_SM21V1-V3/1968 polyprotein (GP1) gene, complete cds1315813260100%0.088%KU963574.1Select seq gb|HQ234500.1|Zika virus isolate IbH_30656 polyprotein gene, partial cds131561315699%0.088%HQ234500.1Select seq gb|KF383118.1|Zika virus strain ArD157995 polyprotein gene, complete cds1296313031100%0.088%KF383118.1Select seq gb|KF383121.1|Zika virus strain ArD158095 polyprotein gene, partial cds128821288297%0.089%KF383121.1Select seq gb|KF383120.1|Zika virus strain ArD142623 nonfunctional polyprotein gene, partial sequence108591085997%0.084%KF383120.1Select seq gb|KU940227.1|Zika virus isolate Bahia08, partial genome50611448287%0.095%KU940227.1Select seq gb|KX212103.1|Zika virus isolate BRZIKV_AB_ES polyprotein gene, partial cds5030503027%0.099%KX212103.1Select seq gb|KU758875.1|Zika virus isolate 15042 polyprotein gene, partial cds4996499627%0.099%KU758875.1Select seq gb|KU758871.1|Zika virus isolate 17170 polyprotein gene, partial cds4993499327%0.099%KU758871.1Select seq gb|KU758870.1|Zika virus isolate 17160 polyprotein gene, partial cds4985498527%0.099%KU758870.1Select seq gb|KU312314.1|Zika virus isolate Z1106031 polyprotein gene, partial cds4985498527%0.099%KU312314.1Select seq gb|KU758873.1|Zika virus isolate 18246 polyprotein gene, partial cds4983498327%0.099%KU758873.1Select seq gb|KU758872.1|Zika virus isolate 01170 polyprotein gene, partial cds4971497127%0.099%KU758872.1Select seq gb|KU758876.1|Zika virus isolate 21068 polyprotein gene, partial cds4960496027%0.099%KU758876.1Select seq gb|KU312313.1|Zika virus isolate Z1106032 polyprotein gene, partial cds4958495827%0.099%KU312313.1Select seq gb|KU758869.1|Zika virus isolate 05211 polyprotein gene, partial cds4949494926%0.099%KU758869.1Select seq gb|KU758868.1|Zika virus isolate 27229 polyprotein gene, partial cds4924492426%0.099%KU758868.1Select seq gb|KU758874.1|Zika virus isolate 20114 polyprotein gene, partial cds4920492026%0.099%KU758874.1Select seq gb|KU646828.1|Zika virus isolate Si322 polyprotein gene, partial cds4659465925%0.099%KU646828.1Select seq gb|KU646827.1|Zika virus isolate Si323 polyprotein gene, partial cds4650465025%0.099%KU646827.1Select seq gb|KX101060.1|Zika virus isolate Bahia02, partial genome42261334475%0.095%KX101060.1Select seq gb|KU312315.1|Zika virus isolate Z1106027 polyprotein gene, partial cds3449344918%0.099%KU312315.1Select seq gb|KU740199.1|Zika virus isolate VE_Ganxian2016 polyprotein gene, partial cds3223322317%0.099%KU740199.1Select seq gb|KX101066.1|Zika virus isolate Bahia01, partial genome31221313374%0.099%KX101066.1Select seq gb|DQ859064.1|Spondweni virus strain SM-6 V-1 polyprotein gene, complete cds2883421395%0.071%DQ859064.1Select seq gb|KJ634273.1|Zika virus strain CK-ISL 2014 E protein (E) gene, partial cds2704270414%0.099%KJ634273.1Select seq gb|KX101064.1|Zika virus isolate Bahia11, partial genome22771082265%0.092%KX101064.1Select seq gb|KU686218.1|Zika virus isolate MEX/InDRE/14/2015 polyprotein gene, partial cds2051205111%0.099%KU686218.1Select seq gb|KU179098.1|Zika virus isolate JMB-185 nonstructural protein 5 gene, partial cds2030203011%0.099%KU179098.1Select seq gb|KX059014.1|Zika virus isolate Haiti/1230/2014 NS5 gene, partial cds184718479%0.0100%KX059014.1Select seq gb|KX059013.1|Zika virus isolate Haiti/1227/2014 NS5 gene, partial cds184718479%0.0100%KX059013.1Select seq gb|KX101061.1|Zika virus isolate Bahia03, partial genome18371393478%0.099%KX101061.1Select seq gb|KM078936.1|Zika virus strain CHI1410214 NS5 protein gene, partial cds176117619%0.0100%KM078936.1Select seq gb|KM078961.1|Zika virus strain CHI2612114 NS5 protein gene, partial cds175717579%0.099%KM078961.1Select seq gb|KM078930.1|Zika virus strain CHI2283714 NS5 protein gene, partial cds175517559%0.099%KM078930.1Select seq gb|KM078971.1|Zika virus strain CHI2613014 NS5 protein gene, partial cds175417549%0.099%KM078971.1Select seq gb|KM078970.1|Zika virus strain CHI2490414 NS5 protein gene, partial cds175417549%0.099%KM078970.1Select seq gb|KM078933.1|Zika virus strain CHI1058514 NS5 protein gene, partial cds175417549%0.099%KM078933.1Select seq gb|KM078929.1|Zika virus strain CHI1805214 NS5 protein gene, partial cds175217529%0.099%KM078929.1Select seq gb|KX173841.1|Zika virus isolate 16Z11 envelope protein gene, partial cds166316639%0.099%KX173841.1Select seq gb|KX173840.1|Zika virus isolate 16Z10 envelope protein gene, partial cds166316639%0.099%KX173840.1Select seq gb|KJ873160.1|Zika virus isolate NC14-03042014-3481 nonstructural protein 5 gene, partial cds161116118%0.0100%KJ873160.1Select seq gb|KX173843.1|Zika virus isolate 16Z62 envelope protein gene, partial cds153215328%0.0100%KX173843.1Select seq gb|KX173844.1|Zika virus isolate 16Z62 envelope protein gene, partial cds152115218%0.0100%KX173844.1Select seq gb|KJ873161.1|Zika virus isolate NC14-02042014-3220 nonstructural protein 5 gene, partial cds142914297%0.0100%KJ873161.1Select seq gb|KM851039.1|Zika virus strain SV0127/14 nonstructural protein 5 gene, partial cds139113917%0.099%KM851039.1Select seq gb|KM851038.1|Zika virus strain CPC-0740 nonstructural protein 5 gene, partial cds135513557%0.098%KM851038.1Select seq gb|KU985087.1|Zika virus isolate MEX/InDRE/Zika-2/2015 nonstructural protein 5 gene, partial cds135313537%0.099%KU985087.1Select seq gb|KU556802.1|Zika virus isolate MEX/InDRE/14/2015 NS5 protein gene, partial cds134613467%0.099%KU556802.1Select seq gb|AF013415.1|Zika virus strain MR-766 NS5 protein (NS5) gene, partial cds1306130610%0.088%AF013415.1Select seq gb|KU724096.1|Zika virus isolate 259249_2015_Panama NS5B gene, partial cds130113017%0.099%KU724096.1Select seq gb|KU232300.1|Zika virus isolate 067ZV_PEBR15 NS5 protein gene, partial cds124012406%0.099%KU232300.1Select seq gb|KT200609.1|Zika virus isolate BR/949/15 NS5 gene, partial cds124012406%0.099%KT200609.1Select seq gb|KU232290.1|Zika virus isolate 036ZV_PEBR15 NS5 protein gene, partial cds123112316%0.099%KU232290.1Select seq gb|KU232297.1|Zika virus isolate 049ZV_PEBR15 NS5 protein gene, partial cds122912296%0.099%KU232297.1Select seq gb|KU232294.1|Zika virus isolate 061ZV_PEBR15 NS5 protein gene, partial cds122012206%0.099%KU232294.1Select seq gb|KU232292.1|Zika virus isolate 054ZV_PEBR15 NS5 protein gene, partial cds121812186%0.099%KU232292.1Select seq gb|KU232298.1|Zika virus isolate 050ZV_PEBR15 NS5 protein gene, partial cds121412146%0.099%KU232298.1Select seq gb|KU232296.1|Zika virus isolate 045ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232296.1Select seq gb|KU232293.1|Zika virus isolate 057ZV_PEBR15 NS5 protein gene, partial cds121112116%0.099%KU232293.1Select seq gb|KU232295.1|Zika virus isolate 068ZV_PEBR15 NS5 protein gene, partial cds120512056%0.099%KU232295.1Select seq gb|KU232288.1|Zika virus isolate 001ZV_PEBR15 NS5 protein gene, partial cds119511956%0.099%KU232288.1Select seq gb|KU232289.1|Zika virus isolate 020ZV_PEBR15 NS5 protein gene, partial cds119111916%0.099%KU232289.1Select seq gb|KU232299.1|Zika virus isolate 015ZV_PEBR15 NS5 protein gene, partial cds118711876%0.099%KU232299.1Select seq gb|KX101063.1|Zika virus isolate Bahia05, partial genome1186746342%0.099%KX101063.1Select seq gb|KU232291.1|Zika virus isolate 051ZV_PEBR15 NS5 protein gene, partial cds118611866%0.099%KU232291.1Select seq gb|KX101065.1|Zika virus isolate Bahia15, partial genome1184781846%0.099%KX101065.1Select seq gb|KU724097.1|Zika virus isolate 259250_2015_Panama NS5B gene, partial cds117311736%0.099%KU724097.1Select seq gb|KU724098.1|Zika virus isolate 259060_2015_Panama NS5B gene, partial cds116211626%0.099%KU724098.1Select seq gb|KU758878.1|Zika virus polyprotein gene, partial cds113911396%0.099%KU758878.1Select seq gb|KU724099.1|Zika virus isolate 259032_2015_Panama NS5B gene, partial cds109710975%0.099%KU724099.1Select seq gb|KF270886.1|Zika virus strain CCB-870 envelope glycoprotein gene, partial cds107710778%0.089%KF270886.1Select seq gb|KX101062.1|Zika virus isolate Bahia04, partial genome1054736841%0.097%KX101062.1Select seq gb|AF372422.1|AF372422Zika virus envelope protein (E) gene, partial cds102010208%0.087%AF372422.1Select seq gb|KU867812.1|Zika virus isolate Jiangxi.CHN/01/2016 nonstructural protein 5 gene, partial cds101810185%0.0100%KU867812.1Select seq gb|KF270887.1|Zika virus strain CCB-870 NS3 protein gene, partial cds100010007%0.089%KF270887.1Select seq gb|KF383022.1|Zika virus strain ArD127988 envelope protein gene, partial cds9809807%0.089%KF383022.1Select seq gb|KF383026.1|Zika virus strain ArD127994 envelope protein gene, partial cds9759757%0.089%KF383026.1Select seq gb|EU303241.1|Zika virus note MR766 (p4 15/9/76) nonstructural protein 5 (NS5) gene, partial cds9719717%0.088%EU303241.1Select seq gb|KF383032.1|Zika virus strain ArD30101 envelope protein gene, partial cds9669667%0.088%KF383032.1Select seq gb|KF383034.1|Zika virus strain ArD30156 envelope protein gene, partial cds9629627%0.088%KF383034.1Select seq gb|KF383029.1|Zika virus strain ArD165522 envelope protein gene, partial cds9629627%0.088%KF383029.1Select seq gb|KF383037.1|Zika virus strain ArA506 envelope protein gene, partial cds9609607%0.088%KF383037.1Select seq gb|KF383036.1|Zika virus strain ArA975 envelope protein gene, partial cds9579577%0.088%KF383036.1Select seq gb|KF383033.1|Zika virus strain AnD30332 envelope protein gene, partial cds9579577%0.088%KF383033.1Select seq gb|KU724100.1|Zika virus isolate 259043_2015_Panama NS5B gene, partial cds9449445%0.099%KU724100.1Select seq gb|KF383039.1|Zika virus strain HD78788 envelope protein gene, partial cds9399397%0.088%KF383039.1Select seq gb|KF383028.1|Zika virus strain ArD165531 envelope protein gene, partial cds9399397%0.088%KF383028.1Select seq gb|KF383031.1|Zika virus strain ArD9957 envelope protein gene, partial cds9359357%0.088%KF383031.1Select seq gb|KF383038.1|Zika virus strain ArA986 envelope protein gene, partial cds9309307%0.087%KF383038.1Select seq gb|KF383046.1|Zika virus strain ArA982 envelope protein gene, partial cds9219217%0.087%KF383046.1Select seq gb|KF383045.1|Zika virus strain ArA27106 envelope protein gene, partial cds9069067%0.087%KF383045.1Select seq gb|KF383043.1|Zika virus strain ArA27443 envelope protein gene, partial cds9029027%0.087%KF383043.1Select seq gb|KF383035.1|Zika virus strain MR1429 envelope protein gene, partial cds9019017%0.086%KF383035.1Select seq gb|KF383103.1|Zika virus strain ArA986 nonstructural protein 5 gene, partial cds8978976%0.088%KF383103.1Select seq gb|KF383086.1|Zika virus strain ArA975 nonstructural protein 5 gene, partial cds8978976%0.088%KF383086.1Select seq gb|KF383041.1|Zika virus strain ArA27290 envelope protein gene, partial cds8978977%0.087%KF383041.1Select seq gb|KF383042.1|Zika virus strain ArA27096 envelope protein gene, partial cds8938937%0.086%KF383042.1Select seq gb|KX247638.1|Zika virus isolate Dominican_Rep-Rus-3-2016 polyprotein gene, partial cds8838834%0.0100%KX247638.1Select seq gb|KU978616.1|Zika virus isolate Dominican_Rep-Rus-2-2016 polyprotein gene, partial cds8778774%0.099%KU978616.1Select seq gb|KX101067.1|Zika virus isolate Bahia12, partial genome872854051%0.090%KX101067.1Select seq gb|KF383040.1|Zika virus strain ArA27101 envelope protein gene, partial cds8668667%0.086%KF383040.1Select seq gb|KF383104.1|Zika virus strain ArA982 nonstructural protein 5 gene, partial cds8658656%0.087%KF383104.1Select seq gb|KF383085.1|Zika virus strain ArD9957 nonstructural protein 5 gene, partial cds8658656%0.087%KF383085.1Select seq gb|KF383106.1|Zika virus strain ArA27443 nonstructural protein 5 gene, partial cds8618616%0.087%KF383106.1Select seq gb|KF383114.1|Zika virus strain AnD30332 nonstructural protein 5 gene, partial cds8568566%0.087%KF383114.1Select seq gb|KF383107.1|Zika virus strain ArA27407 nonstructural protein 5 gene, partial cds8568566%0.087%KF383107.1Select seq gb|KF383088.1|Zika virus strain ArD30101 nonstructural protein 5 gene, partial cds8568566%0.087%KF383088.1Select seq gb|KF383087.1|Zika virus strain ArD30156 nonstructural protein 5 gene, partial cds8528526%0.087%KF383087.1Select seq gb|KF383089.1|Zika virus strain ArD165531 nonstructural protein 5 gene, partial cds8388386%0.086%KF383089.1Select seq gb|KF383101.1|Zika virus strain ArD127710 nonstructural protein 5 gene, partial cds8348346%0.086%KF383101.1Select seq gb|KF383097.1|Zika virus strain ArD127994 nonstructural protein 5 gene, partial cds8348346%0.086%KF383097.1Select seq dbj|AB908162.1|Zika virus gene for polyprotein, partial cds, strain: ZIKV Hu/Tahiti/01u/2014NIID8348344%0.099%AB908162.1Select seq gb|KF383099.1|Zika virus strain ArD127987 nonstructural protein 5 gene, partial cds8298296%0.086%KF383099.1Select seq gb|KF383098.1|Zika virus strain ArD127988 nonstructural protein 5 gene, partial cds8258256%0.086%KF383098.1Select seq gb|KU872850.1|Zika virus isolate Dominican Rep-Rus-2016, NS2 partial cds8208204%0.099%KU872850.1Select seq gb|KX253994.1|Zika virus strain ZIKV/Homo sapiens/GER/GER-BNI-P2/2016 polyprotein gene, partial cds8018014%0.099%KX253994.1Select seq gb|KF383084.1|Zika virus strain HD78788 nonstructural protein 5 gene, partial cds7987986%0.085%KF383084.1Select seq gb|KF383113.1|Zika virus strain ArA1465 nonstructural protein 5 gene, partial cds7927926%0.085%KF383113.1Select seq gb|KC754958.1|Usutu virus isolate ArB1803, complete genome791187954%0.068%KC754958.1Select seq gb|HM147824.1|West Nile virus from Democratic Republic of the Congo, complete genome780171053%0.068%HM147824.1Select seq gb|EF429199.1|West Nile virus SA381/00, complete genome760163357%0.068%EF429199.1Select seq gb|KM203863.1|West Nile virus strain Cz 13-502, complete genome738167454%0.068%KM203863.1Select seq gb|KM203860.1|West Nile virus strain Cz 13-104, complete genome724164654%0.067%KM203860.1Select seq gb|KF383017.1|Zika virus strain ArD149938 envelope protein gene, partial cds7177177%0.081%KF383017.1Select seq gb|KF383016.1|Zika virus strain ArD147917 envelope protein gene, partial cds7137137%0.081%KF383016.1Select seq gb|KF383015.1|Zika virus strain ArD149810 envelope protein gene, partial cds7137137%0.081%KF383015.1Select seq gb|KF383020.1|Zika virus strain ArA1465 envelope protein gene, partial cds7087087%0.081%KF383020.1Select seq gb|KF383021.1|Zika virus strain ArD132912 envelope protein gene, partial cds7067067%0.081%KF383021.1Select seq gb|KF258813.1|Zika virus isolate Java non-structural protein 5 mRNA, partial cds6996993%0.099%KF258813.1Select seq gb|KF383019.1|Zika virus strain ArD132915 envelope protein gene, partial cds6906907%0.080%KF383019.1Select seq gb|KX253995.1|Zika virus strain ZIKV/Homo sapiens/PRI/PRI-BNI-P1/2016 polyprotein gene, partial cds6756753%0.099%KX253995.1Select seq gb|KF383092.1|Zika virus strain ArD147917 nonstructural protein 5 gene, partial cds6556556%0.081%KF383092.1Select seq gb|KF383093.1|Zika virus strain ArD149810 nonstructural protein 5 gene, partial cds6546546%0.080%KF383093.1Select seq gb|KU985088.1|Zika virus isolate MEX/InDRE/Zika-2/2015 envelope protein gene, partial cds6506503%0.0100%KU985088.1Select seq gb|KF383095.1|Zika virus strain ArD132915 nonstructural protein 5 gene, partial cds6486486%0.080%KF383095.1Select seq gb|KF383091.1|Zika virus strain ArD149938 nonstructural protein 5 gene, partial cds6456456%8e-18080%KF383091.1Select seq gb|KX062045.1|Zika virus isolate Haiti/1230/2014 envelope protein gene, partial cds6306303%2e-175100%KX062045.1Select seq gb|KX062044.1|Zika virus isolate Haiti/1227/2014 envelope protein gene, partial cds6256253%7e-17499%KX062044.1Select seq emb|FM210240.2|Dengue virus 2 isolate MD1273, complete genome616142259%4e-17169%FM210240.2Select seq gb|DQ181799.1|Dengue virus type 2 strain ThD2_0017_98, complete genome614164748%1e-17069%DQ181799.1Select seq gb|AF100462.1|AF100462Dengue virus type 2 strain C0390 polyprotein gene, complete cds609162052%6e-16969%AF100462.1Select seq gb|GQ868633.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3793/2008, complete genome600145442%3e-16669%GQ868633.1Select seq gb|KX173842.1|Zika virus isolate 16Z08 envelope protein gene, partial cds5895893%5e-16399%KX173842.1Select seq gb|KR815989.1|Zika virus isolate 15095 envelope protein gene, partial cds5875873%2e-16299%KR815989.1Select seq gb|EU529701.1|Dengue virus 2 isolate DENV-2/US/BID-V1087/1991, complete genome587167948%2e-16268%EU529701.1Select seq gb|JN819408.1|Dengue virus 2 isolate DENV-2/VE/BID-V2161/2001, complete genome583159948%2e-16169%JN819408.1Select seq gb|GU131887.1|Dengue virus 1 isolate DENV-1/IPC/BID-V3775/2006, complete genome581153942%8e-16168%GU131887.1Select seq gb|EU482580.1|Dengue virus 2 isolate DENV-2/US/BID-V1177/1989, complete genome578165948%1e-15968%EU482580.1Select seq gb|EU569702.1|Dengue virus 2 isolate DENV-2/NI/BID-V1228/2007, complete genome574163650%1e-15868%EU569702.1Select seq gb|EU596483.1|Dengue virus 2 isolate DENV-2/NI/BID-V608/2006, complete genome571164750%1e-15768%EU596483.1Select seq gb|JN819407.1|Dengue virus 2 isolate DENV-2/VE/BID-V2613/2007, complete genome569161445%5e-15768%JN819407.1Select seq gb|FJ898466.1|Dengue virus 2 isolate DENV-2/VE/BID-V2942/2000, complete genome565158448%6e-15668%FJ898466.1Select seq gb|KR816334.1|Zika virus isolate BR/UFBA/LabViro/Ex1 envelope protein gene, partial cds5455452%6e-15099%KR816334.1Select seq gb|KR816333.1|Zika virus isolate BR/UFBA/LabViro/23 envelope protein gene, partial cds5445442%2e-14999%KR816333.1Select seq gb|KR816335.1|Zika virus isolate BR/UFBA/LabViro/18 envelope protein gene, partial cds5405402%2e-14899%KR816335.1Select seq gb|KM212966.1|Zika virus isolate NC13(FP)-26112013-22072 glycoprotein gene, partial cds5355352%1e-146100%KM212966.1Select seq gb|KM212965.1|Zika virus isolate NC13(FP)-20112013-22015 glycoprotein gene, partial cds5295292%4e-14599%KM212965.1Select seq gb|KM212964.1|Zika virus isolate NC14-17042014-4554 glycoprotein gene, partial cds5295292%4e-14599%KM212964.1Select seq gb|KM212963.1|Zika virus isolate NC14-23012014-250 glycoprotein gene, partial cds5295292%4e-14599%KM212963.1Select seq gb|KJ579441.1|Zika virus isolate PF13-CP221013c polyprotein gene, partial cds5085082%1e-138100%KJ579441.1Select seq gb|KJ680134.1|Zika virus strain PF13-091213-121 polyprotein gene, partial cds5025022%6e-13799%KJ680134.1Select seq gb|KX261853.1|Zika virus isolate ZIKCOL10 polyprotein gene, partial cds4464462%4e-12099%KX261853.1 Link to comment Share on other sites More sharing options...
niman Posted July 8, 2016 Author Report Share Posted July 8, 2016 Map Updatehttps://www.google.com/maps/d/u/0/edit?hl=en&mid=1XSxKe6FIecV8f33cQwyc7uylxeUÂ Link to comment Share on other sites More sharing options...
niman Posted July 11, 2016 Author Report Share Posted July 11, 2016 Zika virus strain PF13/251013-18, complete genome10,769 bp linear RNAAccession: KX369547.1 GI: 1040461413GenBankFASTAGraphics Link to comment Share on other sites More sharing options...
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